Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277410 | sp|P40934|CYB5_BRAOB | 50.000 | 136 | 56 | 3 | 1 | 127 | 1 | 133 | 2.04e-45 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277410 | G7LAT7 | 88.732 | 142 | 7 | 1 | 1 | 133 | 1 | 142 | 1.52e-86 | 258 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa1277410 | 0.869423 | 3.130614e-66 | -8.615850e-47 |
| Msa0008200 | Msa1277410 | 0.817641 | 2.968343e-52 | -8.615850e-47 |
| Msa0010490 | Msa1277410 | 0.837925 | 3.897656e-57 | -8.615850e-47 |
| Msa0010500 | Msa1277410 | 0.833146 | 6.307404e-56 | -8.615850e-47 |
| Msa0023480 | Msa1277410 | 0.820624 | 6.216788e-53 | -8.615850e-47 |
| Msa0036540 | Msa1277410 | 0.809134 | 2.198235e-50 | -8.615850e-47 |
| Msa0059950 | Msa1277410 | 0.845913 | 3.018833e-59 | -8.615850e-47 |
| Msa0067590 | Msa1277410 | -0.800355 | 1.498646e-48 | -8.615850e-47 |
| Msa0082420 | Msa1277410 | 0.821403 | 4.113999e-53 | -8.615850e-47 |
| Msa0090510 | Msa1277410 | 0.824667 | 7.128350e-54 | -8.615850e-47 |
| Msa0100290 | Msa1277410 | 0.816753 | 4.700697e-52 | -8.615850e-47 |
| Msa0610250 | Msa1277410 | 0.819197 | 1.317647e-52 | -8.615850e-47 |
| Msa0631320 | Msa1277410 | 0.844697 | 6.439364e-59 | -8.615850e-47 |
| Msa0637930 | Msa1277410 | -0.827180 | 1.803940e-54 | -8.615850e-47 |
| Msa0689320 | Msa1277410 | 0.806298 | 8.804035e-50 | -8.615850e-47 |
| Msa0689440 | Msa1277410 | 0.800421 | 1.452462e-48 | -8.615850e-47 |
| Msa0693520 | Msa1277410 | 0.801640 | 8.184364e-49 | -8.615850e-47 |
| Msa0694140 | Msa1277410 | 0.801510 | 8.704904e-49 | -8.615850e-47 |
| Msa0719180 | Msa1277410 | 0.829489 | 5.001893e-55 | -8.615850e-47 |
| Msa0741440 | Msa1277410 | 0.825100 | 5.633386e-54 | -8.615850e-47 |
| Msa0796580 | Msa1277410 | -0.811348 | 7.321436e-51 | -8.615850e-47 |
| Msa0800370 | Msa1277410 | 0.803760 | 2.988705e-49 | -8.615850e-47 |
| Msa0802240 | Msa1277410 | 0.833051 | 6.658430e-56 | -8.615850e-47 |
| Msa0822500 | Msa1277410 | 0.815036 | 1.135484e-51 | -8.615850e-47 |
| Msa0138900 | Msa1277410 | 0.805138 | 1.542740e-49 | -8.615850e-47 |
| Msa0144430 | Msa1277410 | 0.817078 | 3.974154e-52 | -8.615850e-47 |
| Msa0144530 | Msa1277410 | 0.809859 | 1.536136e-50 | -8.615850e-47 |
| Msa0148080 | Msa1277410 | 0.814642 | 1.388570e-51 | -8.615850e-47 |
| Msa0170430 | Msa1277410 | 0.825263 | 5.156612e-54 | -8.615850e-47 |
| Msa0183910 | Msa1277410 | 0.825046 | 5.801795e-54 | -8.615850e-47 |
| Msa0196670 | Msa1277410 | 0.805149 | 1.534241e-49 | -8.615850e-47 |
| Msa0216850 | Msa1277410 | -0.809269 | 2.056796e-50 | -8.615850e-47 |
| Msa0232790 | Msa1277410 | 0.822121 | 2.806678e-53 | -8.615850e-47 |
| Msa0233370 | Msa1277410 | 0.800659 | 1.298929e-48 | -8.615850e-47 |
| Msa0234410 | Msa1277410 | -0.863026 | 3.337950e-64 | -8.615850e-47 |
| Msa1229480 | Msa1277410 | 0.837239 | 5.845509e-57 | -8.615850e-47 |
| Msa1272010 | Msa1277410 | 0.819233 | 1.292959e-52 | -8.615850e-47 |
| Msa1277410 | Msa1277780 | 0.816286 | 5.981892e-52 | -8.615850e-47 |
| Msa1277410 | Msa1307140 | 0.869226 | 3.629992e-66 | -8.615850e-47 |
| Msa1277410 | Msa1307160 | 0.971548 | 2.454500e-133 | -8.615850e-47 |
| Msa1277410 | Msa1307180 | 0.890047 | 1.402087e-73 | -8.615850e-47 |
| Msa1277410 | Msa1309760 | 0.830702 | 2.530926e-55 | -8.615850e-47 |
| Msa1277410 | Msa1315890 | 0.808453 | 3.074374e-50 | -8.615850e-47 |
| Msa1277410 | Msa1316360 | 0.894116 | 3.335827e-75 | -8.615850e-47 |
| Msa1277410 | Msa1336560 | 0.808807 | 2.583217e-50 | -8.615850e-47 |
| Msa1277410 | Msa1341060 | 0.841216 | 5.434273e-58 | -8.615850e-47 |
| Msa1277410 | Msa1346840 | 0.826998 | 1.993514e-54 | -8.615850e-47 |
| Msa1277410 | Msa1352890 | 0.811136 | 8.142739e-51 | -8.615850e-47 |
| Msa1277410 | Msa1359400 | 0.822318 | 2.526177e-53 | -8.615850e-47 |
| Msa1277410 | Msa1364350 | -0.822050 | 2.914349e-53 | -8.615850e-47 |
| Msa1277410 | Msa1382380 | -0.828260 | 9.921883e-55 | -8.615850e-47 |
| Msa1277410 | Msa1385730 | 0.811474 | 6.874586e-51 | -8.615850e-47 |
| Msa1277410 | Msa1395730 | 0.800472 | 1.418540e-48 | -8.615850e-47 |
| Msa1277410 | Msa1407190 | 0.802902 | 4.499867e-49 | -8.615850e-47 |
| Msa1277410 | Msa1407760 | 0.811560 | 6.585691e-51 | -8.615850e-47 |
| Msa1277410 | Msa1465250 | 0.813859 | 2.068271e-51 | -8.615850e-47 |
| Msa0367760 | Msa1277410 | 0.814015 | 1.910628e-51 | -8.615850e-47 |
| Msa0374340 | Msa1277410 | -0.800148 | 1.650940e-48 | -8.615850e-47 |
| Msa0380100 | Msa1277410 | 0.814618 | 1.405613e-51 | -8.615850e-47 |
| Msa0385500 | Msa1277410 | 0.821216 | 4.542162e-53 | -8.615850e-47 |
| Msa0386940 | Msa1277410 | 0.800688 | 1.281376e-48 | -8.615850e-47 |
| Msa0404050 | Msa1277410 | 0.804463 | 2.134316e-49 | -8.615850e-47 |
| Msa0427580 | Msa1277410 | 0.815835 | 7.542783e-52 | -8.615850e-47 |
| Msa0456770 | Msa1277410 | 0.805394 | 1.363354e-49 | -8.615850e-47 |
| Msa0460740 | Msa1277410 | 0.826568 | 2.526301e-54 | -8.615850e-47 |
| Msa0481030 | Msa1277410 | 0.817116 | 3.897202e-52 | -8.615850e-47 |
| Msa0982090 | Msa1277410 | -0.823511 | 1.331684e-53 | -8.615850e-47 |
| Msa1023310 | Msa1277410 | 0.833638 | 4.754820e-56 | -8.615850e-47 |
| Msa1059470 | Msa1277410 | 0.810618 | 1.053951e-50 | -8.615850e-47 |
| Msa1062040 | Msa1277410 | 0.859338 | 4.432919e-63 | -8.615850e-47 |
| Msa1070540 | Msa1277410 | 0.802284 | 6.035825e-49 | -8.615850e-47 |
| Msa1101240 | Msa1277410 | 0.801048 | 1.082111e-48 | -8.615850e-47 |
| Msa0276100 | Msa1277410 | 0.804405 | 2.194564e-49 | -8.615850e-47 |
| Msa0318680 | Msa1277410 | 0.809017 | 2.328945e-50 | -8.615850e-47 |
| Msa0333850 | Msa1277410 | -0.806759 | 7.037606e-50 | -8.615850e-47 |
| Msa0341480 | Msa1277410 | 0.801549 | 8.545959e-49 | -8.615850e-47 |
| Msa1107200 | Msa1277410 | 0.840526 | 8.246800e-58 | -8.615850e-47 |
| Msa1123780 | Msa1277410 | 0.807006 | 6.240714e-50 | -8.615850e-47 |
| Msa1150780 | Msa1277410 | 0.827472 | 1.534924e-54 | -8.615850e-47 |
| Msa1158390 | Msa1277410 | 0.826305 | 2.917563e-54 | -8.615850e-47 |
| Msa1169920 | Msa1277410 | 0.813087 | 3.057350e-51 | -8.615850e-47 |
| Msa1175200 | Msa1277410 | 0.811484 | 6.840025e-51 | -8.615850e-47 |
| Msa1176170 | Msa1277410 | 0.924600 | 5.671546e-90 | -8.615850e-47 |
| Msa1183140 | Msa1277410 | 0.845370 | 4.236003e-59 | -8.615850e-47 |
| Msa1206400 | Msa1277410 | -0.808238 | 3.417297e-50 | -8.615850e-47 |
| Msa1206450 | Msa1277410 | -0.812394 | 4.334802e-51 | -8.615850e-47 |
| Msa0485710 | Msa1277410 | 0.811922 | 5.495269e-51 | -8.615850e-47 |
| Msa0500470 | Msa1277410 | 0.822147 | 2.767324e-53 | -8.615850e-47 |
| Msa0518170 | Msa1277410 | 0.816277 | 6.009083e-52 | -8.615850e-47 |
| Msa0527540 | Msa1277410 | 0.806848 | 6.737951e-50 | -8.615850e-47 |
| Msa0534870 | Msa1277410 | 0.839562 | 1.470834e-57 | -8.615850e-47 |
| Msa0536350 | Msa1277410 | 0.804355 | 2.248027e-49 | -8.615850e-47 |
| Msa0574930 | Msa1277410 | 0.851905 | 6.542088e-61 | -8.615850e-47 |
| Msa0592330 | Msa1277410 | 0.800691 | 1.279745e-48 | -8.615850e-47 |
| Msa0865030 | Msa1277410 | 0.806789 | 6.934869e-50 | -8.615850e-47 |
| Msa0881530 | Msa1277410 | -0.840494 | 8.409068e-58 | -8.615850e-47 |
| Msa0930740 | Msa1277410 | 0.859992 | 2.816253e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277410 | MtrunA17_Chr8g0346311 | 88.732 | 142 | 7 | 1 | 1 | 133 | 1 | 142 | 3.53e-90 | 258 |
| Msa1277410 | MtrunA17_Chr3g0127451 | 51.471 | 136 | 54 | 2 | 1 | 127 | 1 | 133 | 6.64e-46 | 145 |
| Msa1277410 | MtrunA17_Chr7g0276081 | 55.714 | 140 | 52 | 2 | 3 | 133 | 4 | 142 | 1.78e-45 | 144 |
| Msa1277410 | MtrunA17_Chr4g0010061 | 44.928 | 138 | 64 | 3 | 1 | 129 | 14 | 148 | 4.79e-41 | 133 |
| Msa1277410 | MtrunA17_Chr5g0419651 | 54.444 | 90 | 31 | 2 | 1 | 81 | 1 | 89 | 5.26e-28 | 99.8 |
| Msa1277410 | MtrunA17_Chr3g0134591 | 30.000 | 140 | 78 | 3 | 3 | 127 | 2 | 136 | 6.81e-20 | 79.7 |
| Msa1277410 | MtrunA17_Chr3g0115151 | 31.852 | 135 | 62 | 3 | 1 | 106 | 457 | 590 | 4.55e-15 | 70.5 |
| Msa1277410 | MtrunA17_Chr3g0115131 | 46.053 | 76 | 31 | 2 | 5 | 71 | 516 | 590 | 2.13e-14 | 68.6 |
| Msa1277410 | MtrunA17_Chr5g0424491 | 41.463 | 82 | 38 | 2 | 1 | 73 | 513 | 593 | 2.61e-13 | 65.5 |
| Msa1277410 | MtrunA17_Chr6g0486891 | 37.681 | 69 | 35 | 1 | 12 | 72 | 50 | 118 | 4.02e-13 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277410 | AT5G53560.1 | 48.529 | 136 | 58 | 3 | 1 | 127 | 1 | 133 | 5.94e-45 | 143 |
| Msa1277410 | AT5G48810.1 | 48.889 | 135 | 59 | 2 | 1 | 126 | 1 | 134 | 1.37e-43 | 140 |
| Msa1277410 | AT2G32720.1 | 49.630 | 135 | 56 | 3 | 1 | 126 | 1 | 132 | 1.53e-42 | 137 |
| Msa1277410 | AT2G32720.2 | 50.000 | 114 | 45 | 3 | 22 | 126 | 22 | 132 | 1.63e-30 | 107 |
| Msa1277410 | AT2G46650.1 | 46.154 | 130 | 58 | 3 | 8 | 127 | 5 | 132 | 1.09e-28 | 102 |
| Msa1277410 | AT1G26340.1 | 46.512 | 86 | 37 | 1 | 1 | 77 | 1 | 86 | 2.88e-26 | 96.3 |
| Msa1277410 | AT1G37130.1 | 41.250 | 80 | 37 | 2 | 1 | 71 | 538 | 616 | 1.25e-14 | 69.7 |
| Msa1277410 | AT1G60660.1 | 41.176 | 68 | 32 | 1 | 12 | 71 | 53 | 120 | 1.54e-14 | 65.5 |
| Msa1277410 | AT1G77760.1 | 40.000 | 80 | 38 | 2 | 1 | 71 | 541 | 619 | 2.73e-13 | 65.9 |
Find 33 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTGCTCTTCAGTACTA+TGG | 0.296249 | 8_3:+12673767 | Msa1277410:CDS |
| CCTGGTGCCGTTGCTGATAT+TGG | 0.324237 | 8_3:+12673739 | Msa1277410:CDS |
| ATTCATTACTTAAGATTCAT+TGG | 0.334499 | 8_3:-12673804 | None:intergenic |
| AGAAGATTGATTGCTGCTTA+TGG | 0.334533 | 8_3:-12673690 | None:intergenic |
| ATCAGAGACTTTAACCTTTG+AGG | 0.335279 | 8_3:+12669457 | Msa1277410:CDS |
| GACTTTAACCTTTGAGGATG+TGG | 0.376866 | 8_3:+12669463 | Msa1277410:CDS |
| ATAAGCAGCAATCAATCTTC+TGG | 0.400727 | 8_3:+12673692 | Msa1277410:CDS |
| TGATGGAAAAGTACTATGTC+GGG | 0.401001 | 8_3:+12673600 | Msa1277410:CDS |
| CTGGTGCCGTTGCTGATATT+GGG | 0.414415 | 8_3:+12673740 | Msa1277410:CDS |
| CTTATGGTAGATGCTTGAAT+TGG | 0.417094 | 8_3:-12673674 | None:intergenic |
| GATGCTTGAATTGGTGCTGT+TGG | 0.425349 | 8_3:-12673665 | None:intergenic |
| CTGGATCATAGTCAACAAAA+AGG | 0.426357 | 8_3:+12669511 | Msa1277410:CDS |
| GGATTGTTCTTAGCTGCTGC+TGG | 0.435494 | 8_3:-12673644 | None:intergenic |
| AATCTTGCAGTTGAAGAAGA+TGG | 0.435798 | 8_3:+12669427 | Msa1277410:intron |
| TAAGTAATGAATTTGAACTT+TGG | 0.441457 | 8_3:+12673815 | Msa1277410:exon |
| GTGGCCAACATCTTCAAAAT+CGG | 0.455103 | 8_3:-12673558 | None:intergenic |
| CGCAATCTAGCATGAATAAG+AGG | 0.472461 | 8_3:-12673982 | None:intergenic |
| ACAATAACAAGAACGATTGC+TGG | 0.477730 | 8_3:+12669492 | Msa1277410:CDS |
| GTTGAAGTTCTTGCAGTACC+TGG | 0.488377 | 8_3:+12673721 | Msa1277410:CDS |
| TAATAATCTATATCAACATA+AGG | 0.507284 | 8_3:+12673879 | Msa1277410:three_prime_UTR |
| CCAATATCAGCAACGGCACC+AGG | 0.516481 | 8_3:-12673739 | None:intergenic |
| ATCTTGCAGTTGAAGAAGAT+GGG | 0.518015 | 8_3:+12669428 | Msa1277410:intron |
| TGACTCGGCAACAGAGATGA+TGG | 0.533371 | 8_3:+12673583 | Msa1277410:CDS |
| ATGATGGAAAAGTACTATGT+CGG | 0.538408 | 8_3:+12673599 | Msa1277410:CDS |
| AGCTGCTGCTGGAAGAGTGT+TGG | 0.552849 | 8_3:-12673633 | None:intergenic |
| GAGATATTATATCAGAGTCA+TGG | 0.553803 | 8_3:-12674006 | None:intergenic |
| GTGCTTAGCCACATCCTCAA+AGG | 0.580670 | 8_3:-12669471 | None:intergenic |
| AGATGTTGGCCACAGTGACT+CGG | 0.590642 | 8_3:+12673568 | Msa1277410:CDS |
| GCCAACATCTTCAAAATCGG+TGG | 0.624406 | 8_3:-12673555 | None:intergenic |
| GCAGATCCCAATATCAGCAA+CGG | 0.642745 | 8_3:-12673746 | None:intergenic |
| GATGGAAAAGTACTATGTCG+GGG | 0.689368 | 8_3:+12673601 | Msa1277410:CDS |
| TCTCTGTTGCCGAGTCACTG+TGG | 0.717695 | 8_3:-12673577 | None:intergenic |
| GGAAAAGTACTATGTCGGGG+AGG | 0.724893 | 8_3:+12673604 | Msa1277410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAAATATATTTTATTTT+GGG | - | chr8_3:12671954-12671973 | None:intergenic | 0.0% |
| !!! | ATATTAAATATATTTTATTT+TGG | - | chr8_3:12671955-12671974 | None:intergenic | 0.0% |
| !!! | AAAATCTGATTAATTTTTTT+TGG | + | chr8_3:12669322-12669341 | Msa1277410:intron | 10.0% |
| !!! | AAATCTGATTAATTTTTTTT+GGG | + | chr8_3:12669323-12669342 | Msa1277410:intron | 10.0% |
| !! | GAAAAAAAAAAAAACTAAAT+TGG | - | chr8_3:12670080-12670099 | None:intergenic | 10.0% |
| !! | TATTGTAGTTAAAAAAAAAT+TGG | + | chr8_3:12670702-12670721 | Msa1277410:intron | 10.0% |
| !! | ATTGTAGTTAAAAAAAAATT+GGG | + | chr8_3:12670703-12670722 | Msa1277410:intron | 10.0% |
| !!! | TACTGTTTTTTTTTTTTTTT+GGG | - | chr8_3:12671885-12671904 | None:intergenic | 10.0% |
| !! | AAGTAATGAAATTTATATTT+AGG | + | chr8_3:12672773-12672792 | Msa1277410:intron | 10.0% |
| !! | AAAAACTAAATTGGAATAAA+AGG | - | chr8_3:12670071-12670090 | None:intergenic | 15.0% |
| !!! | ATAAATTTATACTCTTTTTG+AGG | - | chr8_3:12670383-12670402 | None:intergenic | 15.0% |
| !! | TTGTAGTTAAAAAAAAATTG+GGG | + | chr8_3:12670704-12670723 | Msa1277410:intron | 15.0% |
| !!! | AATATGTTTTGATAATTAGA+CGG | - | chr8_3:12670910-12670929 | None:intergenic | 15.0% |
| !!! | TTTTTTAAACATAAGTATTG+TGG | + | chr8_3:12671269-12671288 | Msa1277410:intron | 15.0% |
| !! | TTTAAATTAGTAAACTCTTA+TGG | + | chr8_3:12671388-12671407 | Msa1277410:intron | 15.0% |
| !! | TTAAATTAGTAAACTCTTAT+GGG | + | chr8_3:12671389-12671408 | Msa1277410:intron | 15.0% |
| !!! | CTACTGTTTTTTTTTTTTTT+TGG | - | chr8_3:12671886-12671905 | None:intergenic | 15.0% |
| !!! | TTTCTGTTTTTTTTCTTTTT+CGG | + | chr8_3:12672047-12672066 | Msa1277410:intron | 15.0% |
| !!! | AGAGATTTTAAAAAGTAAAT+AGG | - | chr8_3:12672213-12672232 | None:intergenic | 15.0% |
| !! | TATAAATTTATGTTGTTAGA+TGG | + | chr8_3:12672714-12672733 | Msa1277410:intron | 15.0% |
| !! | TAATAATCTATATCAACATA+AGG | + | chr8_3:12673879-12673898 | Msa1277410:three_prime_UTR | 15.0% |
| !!! | ATATCTCAAATATTTTGAAA+TGG | + | chr8_3:12674022-12674041 | Msa1277410:three_prime_UTR | 15.0% |
| !!! | ATTTTAAGAACTGAAAATGA+AGG | - | chr8_3:12669307-12669326 | None:intergenic | 20.0% |
| !!! | TTATGTTATTGTCTAGTTTT+TGG | + | chr8_3:12669861-12669880 | Msa1277410:intron | 20.0% |
| !! | TAAATTGGAATAAAAGGTTA+TGG | - | chr8_3:12670065-12670084 | None:intergenic | 20.0% |
| !!! | TTTTTCAATTTTTTTTGGCT+TGG | + | chr8_3:12670094-12670113 | Msa1277410:intron | 20.0% |
| !!! | TTTTAAACTTTCTCGATTTT+GGG | - | chr8_3:12670230-12670249 | None:intergenic | 20.0% |
| !!! | TTTTTAAACTTTCTCGATTT+TGG | - | chr8_3:12670231-12670250 | None:intergenic | 20.0% |
| !! | TAAACATTCAATCTCTTATT+GGG | - | chr8_3:12670341-12670360 | None:intergenic | 20.0% |
| !! | TTAAACATTCAATCTCTTAT+TGG | - | chr8_3:12670342-12670361 | None:intergenic | 20.0% |
| !! | TGTAGTTAAAAAAAAATTGG+GGG | + | chr8_3:12670705-12670724 | Msa1277410:intron | 20.0% |
| !! | ACAATATTAAAGCAAAATGT+TGG | - | chr8_3:12670732-12670751 | None:intergenic | 20.0% |
| !!! | TTTTGCTTTAATATTGTATG+TGG | + | chr8_3:12670735-12670754 | Msa1277410:intron | 20.0% |
| !!! | GCATCTAATTTTATACTAAT+TGG | + | chr8_3:12670757-12670776 | Msa1277410:intron | 20.0% |
| !!! | TTTAACTTGTTTGCATTAAA+AGG | + | chr8_3:12670780-12670799 | Msa1277410:intron | 20.0% |
| !!! | TTTGAATTTGCTGTAAAAAT+TGG | + | chr8_3:12670829-12670848 | Msa1277410:intron | 20.0% |
| !! | AAAAATTGGATAAAGTTACA+TGG | + | chr8_3:12670843-12670862 | Msa1277410:intron | 20.0% |
| !! | AATGATGAGAGAAAAAAAAA+AGG | - | chr8_3:12670955-12670974 | None:intergenic | 20.0% |
| !! | AAAAAAAAAACAGAAAGACA+TGG | + | chr8_3:12671803-12671822 | Msa1277410:intron | 20.0% |
| !! | AAAAAAAAACAGTAGAATTG+TGG | + | chr8_3:12671891-12671910 | Msa1277410:intron | 20.0% |
| !! | AAAAAAAACAGTAGAATTGT+GGG | + | chr8_3:12671892-12671911 | Msa1277410:intron | 20.0% |
| !!! | TTCTGTTTTTTTTCTTTTTC+GGG | + | chr8_3:12672048-12672067 | Msa1277410:intron | 20.0% |
| !!! | TACTTTTTAAAATCTCTTAG+AGG | + | chr8_3:12672216-12672235 | Msa1277410:intron | 20.0% |
| !! | TATTTATTAGTAGCAATGTA+GGG | - | chr8_3:12672389-12672408 | None:intergenic | 20.0% |
| !! | TTATTTATTAGTAGCAATGT+AGG | - | chr8_3:12672390-12672409 | None:intergenic | 20.0% |
| !!! | ATTTCTCTCTAAGATTAAAA+TGG | - | chr8_3:12672639-12672658 | None:intergenic | 20.0% |
| !! | GTATTCCTATGTTTATTATA+GGG | - | chr8_3:12672864-12672883 | None:intergenic | 20.0% |
| !! | TGTATTCCTATGTTTATTAT+AGG | - | chr8_3:12672865-12672884 | None:intergenic | 20.0% |
| !!! | TTTGTACTTTTGTTATTAGT+AGG | + | chr8_3:12672946-12672965 | Msa1277410:intron | 20.0% |
| !!! | ATTTTTCACATGACTAAAAT+GGG | - | chr8_3:12673151-12673170 | None:intergenic | 20.0% |
| !!! | GTTGTTATTTATTATTCTCA+GGG | + | chr8_3:12673326-12673345 | Msa1277410:intron | 20.0% |
| !! | ATTCATTACTTAAGATTCAT+TGG | - | chr8_3:12673807-12673826 | None:intergenic | 20.0% |
| !! | TAAGTAATGAATTTGAACTT+TGG | + | chr8_3:12673815-12673834 | Msa1277410:exon | 20.0% |
| ! | AGGAATATGAATATGATTCA+TGG | + | chr8_3:12669721-12669740 | Msa1277410:intron | 25.0% |
| ! | TGAATATGATTCATGGTATT+AGG | + | chr8_3:12669728-12669747 | Msa1277410:intron | 25.0% |
| ! | GAATATGATTCATGGTATTA+GGG | + | chr8_3:12669729-12669748 | Msa1277410:intron | 25.0% |
| ! | TAGAATACACATTGAATTCA+GGG | - | chr8_3:12669907-12669926 | None:intergenic | 25.0% |
| ! | ATAGAATACACATTGAATTC+AGG | - | chr8_3:12669908-12669927 | None:intergenic | 25.0% |
| !! | TGATCTGTCAATAATTTGTA+TGG | + | chr8_3:12669964-12669983 | Msa1277410:intron | 25.0% |
| !! | ATGTAGTCATTCTAATTTGT+AGG | - | chr8_3:12670179-12670198 | None:intergenic | 25.0% |
| ! | TTAATACTCACTCTCTAATT+GGG | + | chr8_3:12670276-12670295 | Msa1277410:intron | 25.0% |
| !! | TTAAATCAATGTGAAGTGTT+GGG | + | chr8_3:12670299-12670318 | Msa1277410:intron | 25.0% |
| !!! | GAAATTAGATGGATTTTTGA+AGG | - | chr8_3:12670425-12670444 | None:intergenic | 25.0% |
| ! | ATGATGCAAAAAAACTGTAA+TGG | - | chr8_3:12670459-12670478 | None:intergenic | 25.0% |
| ! | TTAGACTCTATTTATATCAG+TGG | - | chr8_3:12670809-12670828 | None:intergenic | 25.0% |
| !!! | TAAAGTTACATGGTTTTAGA+AGG | + | chr8_3:12670853-12670872 | Msa1277410:intron | 25.0% |
| ! | CATATTCATACTGTGAAAAT+TGG | + | chr8_3:12670924-12670943 | Msa1277410:intron | 25.0% |
| ! | CACTAAAAGTTAAAAATCCA+TGG | - | chr8_3:12671173-12671192 | None:intergenic | 25.0% |
| ! | ATCAATGAAACTATAATGCT+AGG | + | chr8_3:12671225-12671244 | Msa1277410:intron | 25.0% |
| ! | AAATATCCAACATTCTAACT+TGG | - | chr8_3:12671307-12671326 | None:intergenic | 25.0% |
| ! | AATTTGCAAAGATTTAACCA+GGG | - | chr8_3:12671596-12671615 | None:intergenic | 25.0% |
| ! | AGAAAAAAAACAGAAAGACA+CGG | - | chr8_3:12672043-12672062 | None:intergenic | 25.0% |
| !!! | TTTTTAAAATCTCTTAGAGG+AGG | + | chr8_3:12672219-12672238 | Msa1277410:intron | 25.0% |
| ! | AGTATTTCATATTACTCAGT+GGG | + | chr8_3:12672335-12672354 | Msa1277410:intron | 25.0% |
| ! | TTCTTAAACGAAATAATCAG+TGG | - | chr8_3:12672432-12672451 | None:intergenic | 25.0% |
| ! | GTATTTATCATGTTACTGAT+GGG | - | chr8_3:12672559-12672578 | None:intergenic | 25.0% |
| ! | TACTTTAAACAAACGCATTT+CGG | - | chr8_3:12672758-12672777 | None:intergenic | 25.0% |
| ! | ATTACAATGGAATACAAGTT+AGG | - | chr8_3:12672997-12673016 | None:intergenic | 25.0% |
| ! | AACTTGTATTCCATTGTAAT+AGG | + | chr8_3:12672997-12673016 | Msa1277410:intron | 25.0% |
| ! | ACATCATATACCTATTACAA+TGG | - | chr8_3:12673010-12673029 | None:intergenic | 25.0% |
| !! | CATTTTTCACATGACTAAAA+TGG | - | chr8_3:12673152-12673171 | None:intergenic | 25.0% |
| !!! | CATTTTAGTCATGTGAAAAA+TGG | + | chr8_3:12673150-12673169 | Msa1277410:intron | 25.0% |
| !!! | CTGTCTCAAATTATTTTTCT+CGG | + | chr8_3:12673294-12673313 | Msa1277410:intron | 25.0% |
| !!! | CGTTGTTATTTATTATTCTC+AGG | + | chr8_3:12673325-12673344 | Msa1277410:intron | 25.0% |
| !!! | TGTGTTTTATTATCATGTAG+AGG | + | chr8_3:12673933-12673952 | Msa1277410:three_prime_UTR | 25.0% |
| !!! | GTGTTTTATTATCATGTAGA+GGG | + | chr8_3:12673934-12673953 | Msa1277410:three_prime_UTR | 25.0% |
| !! | TTTGTGTTCTTGATTTTCTA+TGG | + | chr8_3:12673959-12673978 | Msa1277410:three_prime_UTR | 25.0% |
| ACTGAGAATGATTGTGATAT+AGG | + | chr8_3:12669701-12669720 | Msa1277410:intron | 30.0% | |
| CATTAGATCATGTCATGATA+TGG | - | chr8_3:12670021-12670040 | None:intergenic | 30.0% | |
| ! | TCTAATTTGTAGGAAGATCA+AGG | - | chr8_3:12670169-12670188 | None:intergenic | 30.0% |
| GTTAATACTCACTCTCTAAT+TGG | + | chr8_3:12670275-12670294 | Msa1277410:intron | 30.0% | |
| GTTAAATCAATGTGAAGTGT+TGG | + | chr8_3:12670298-12670317 | Msa1277410:intron | 30.0% | |
| !! | ATGGATTTTTGAAGGAAATG+AGG | - | chr8_3:12670417-12670436 | None:intergenic | 30.0% |
| TTAACATCACGGAAATTAGA+TGG | - | chr8_3:12670436-12670455 | None:intergenic | 30.0% | |
| AACTGTAATGGTTAACATCA+CGG | - | chr8_3:12670447-12670466 | None:intergenic | 30.0% | |
| ! | TGCATACATATTAAGAGTGT+CGG | - | chr8_3:12670574-12670593 | None:intergenic | 30.0% |
| !! | TTTCTCTCATCATTTTGACA+TGG | + | chr8_3:12670961-12670980 | Msa1277410:intron | 30.0% |
| ! | TATATTTTGCACAGTTGCAA+AGG | - | chr8_3:12670990-12671009 | None:intergenic | 30.0% |
| AATTGCTAAAGAGTGAAGAA+CGG | - | chr8_3:12671124-12671143 | None:intergenic | 30.0% | |
| TCATTACCAAGTTAGAATGT+TGG | + | chr8_3:12671298-12671317 | Msa1277410:intron | 30.0% | |
| ! | AGTGTTGAAAACATCTACAA+TGG | - | chr8_3:12671359-12671378 | None:intergenic | 30.0% |
| ATGATTAATCTAGTAACAGC+TGG | - | chr8_3:12671506-12671525 | None:intergenic | 30.0% | |
| GAATTTGCAAAGATTTAACC+AGG | - | chr8_3:12671597-12671616 | None:intergenic | 30.0% | |
| GAGTATTTCATATTACTCAG+TGG | + | chr8_3:12672334-12672353 | Msa1277410:intron | 30.0% | |
| GTATTTCATATTACTCAGTG+GGG | + | chr8_3:12672336-12672355 | Msa1277410:intron | 30.0% | |
| TATTTCATATTACTCAGTGG+GGG | + | chr8_3:12672337-12672356 | Msa1277410:intron | 30.0% | |
| CGTATTTATCATGTTACTGA+TGG | - | chr8_3:12672560-12672579 | None:intergenic | 30.0% | |
| AATACGATCTTTCATATGAG+TGG | + | chr8_3:12672574-12672593 | Msa1277410:intron | 30.0% | |
| GAGAAATATGAACTCATCAT+TGG | + | chr8_3:12672652-12672671 | Msa1277410:intron | 30.0% | |
| TTAGATGGCATAAACTACAT+TGG | + | chr8_3:12672729-12672748 | Msa1277410:intron | 30.0% | |
| TAGCACCCTATAATAAACAT+AGG | + | chr8_3:12672856-12672875 | Msa1277410:intron | 30.0% | |
| ACACATTCACATGAATGAAT+GGG | - | chr8_3:12672897-12672916 | None:intergenic | 30.0% | |
| AACACATTCACATGAATGAA+TGG | - | chr8_3:12672898-12672917 | None:intergenic | 30.0% | |
| ! | ATATGATGTTACCCCATTTT+TGG | + | chr8_3:12673021-12673040 | Msa1277410:CDS | 30.0% |
| ! | TCATGTCTTTAAAGAAGGTA+GGG | + | chr8_3:12673265-12673284 | Msa1277410:intron | 30.0% |
| TGAGTTGCTGAAAAAAACTA+CGG | - | chr8_3:12673365-12673384 | None:intergenic | 30.0% | |
| ! | TTTTCTTGCTCTCTTCTTAT+AGG | - | chr8_3:12673457-12673476 | None:intergenic | 30.0% |
| ACATTCAACTAACAATCTTC+TGG | + | chr8_3:12673508-12673527 | Msa1277410:intron | 30.0% | |
| !! | ATGATGGAAAAGTACTATGT+CGG | + | chr8_3:12673599-12673618 | Msa1277410:CDS | 30.0% |
| GAGATATTATATCAGAGTCA+TGG | - | chr8_3:12674009-12674028 | None:intergenic | 30.0% | |
| !! | TACAAGATTTTGACAGAGGT+TGG | - | chr8_3:12669258-12669277 | None:intergenic | 35.0% |
| !! | TGCTTACAAGATTTTGACAG+AGG | - | chr8_3:12669262-12669281 | None:intergenic | 35.0% |
| AATCTTGCAGTTGAAGAAGA+TGG | + | chr8_3:12669427-12669446 | Msa1277410:intron | 35.0% | |
| ATCTTGCAGTTGAAGAAGAT+GGG | + | chr8_3:12669428-12669447 | Msa1277410:intron | 35.0% | |
| ATCAGAGACTTTAACCTTTG+AGG | + | chr8_3:12669457-12669476 | Msa1277410:CDS | 35.0% | |
| ACAATAACAAGAACGATTGC+TGG | + | chr8_3:12669492-12669511 | Msa1277410:CDS | 35.0% | |
| CTGGATCATAGTCAACAAAA+AGG | + | chr8_3:12669511-12669530 | Msa1277410:CDS | 35.0% | |
| !!! | GGTATTAGGGTTTTAAACTG+CGG | + | chr8_3:12669742-12669761 | Msa1277410:intron | 35.0% |
| GACAGATCAAAATACTCTTG+TGG | - | chr8_3:12669953-12669972 | None:intergenic | 35.0% | |
| CACTCTTAATATGTATGCAG+TGG | + | chr8_3:12670575-12670594 | Msa1277410:intron | 35.0% | |
| TAATATGTATGCAGTGGTGT+TGG | + | chr8_3:12670581-12670600 | Msa1277410:intron | 35.0% | |
| !! | ATCACATTCTCAGCTTGTTA+TGG | + | chr8_3:12671017-12671036 | Msa1277410:intron | 35.0% |
| !! | TCACATTCTCAGCTTGTTAT+GGG | + | chr8_3:12671018-12671037 | Msa1277410:intron | 35.0% |
| AGATTCAACTTGGTAGAGTT+AGG | - | chr8_3:12671074-12671093 | None:intergenic | 35.0% | |
| CAATGAAGCTAGATTCAACT+TGG | - | chr8_3:12671084-12671103 | None:intergenic | 35.0% | |
| GGACAAATTGACAAATCACA+AGG | - | chr8_3:12671152-12671171 | None:intergenic | 35.0% | |
| ! | GTGATTTGTCAATTTGTCCA+TGG | + | chr8_3:12671153-12671172 | Msa1277410:intron | 35.0% |
| ! | CTATAATGCTAGGTCTTTTC+TGG | + | chr8_3:12671235-12671254 | Msa1277410:intron | 35.0% |
| !! | TTGAGTTGATAACCTTGCTT+TGG | + | chr8_3:12671446-12671465 | Msa1277410:intron | 35.0% |
| AGATTAGATTCTCCAAAGCA+AGG | - | chr8_3:12671461-12671480 | None:intergenic | 35.0% | |
| GAAGACTTTGCTACTCTAAA+CGG | - | chr8_3:12671568-12671587 | None:intergenic | 35.0% | |
| ! | GCTGATTATGAAGATTGGTT+TGG | - | chr8_3:12671668-12671687 | None:intergenic | 35.0% |
| TTTCAAAACGACTGCTATGT+AGG | + | chr8_3:12671919-12671938 | Msa1277410:intron | 35.0% | |
| !!! | AGTTTTGAGATGAGAAAGCA+AGG | - | chr8_3:12672145-12672164 | None:intergenic | 35.0% |
| GAGTAATATGAAATACTCCG+TGG | - | chr8_3:12672332-12672351 | None:intergenic | 35.0% | |
| TTCGTTTAAGAACTAGCATC+AGG | + | chr8_3:12672440-12672459 | Msa1277410:intron | 35.0% | |
| ! | GAACTCATCATTGGTTACTT+CGG | + | chr8_3:12672661-12672680 | Msa1277410:intron | 35.0% |
| TATTTAGGAATAACTTCCCC+AGG | + | chr8_3:12672788-12672807 | Msa1277410:intron | 35.0% | |
| ATTTCCATCATTGCTTTCCT+GGG | - | chr8_3:12672808-12672827 | None:intergenic | 35.0% | |
| AATTTCCATCATTGCTTTCC+TGG | - | chr8_3:12672809-12672828 | None:intergenic | 35.0% | |
| !! | GTCTCGGTTTATTTTTCTCA+GGG | - | chr8_3:12673216-12673235 | None:intergenic | 35.0% |
| !! | TGTCTCGGTTTATTTTTCTC+AGG | - | chr8_3:12673217-12673236 | None:intergenic | 35.0% |
| ! | TTGCCTCATGTCTTTAAAGA+AGG | + | chr8_3:12673260-12673279 | Msa1277410:intron | 35.0% |
| ! | CTACCTTCTTTAAAGACATG+AGG | - | chr8_3:12673266-12673285 | None:intergenic | 35.0% |
| ! | CTCATGTCTTTAAAGAAGGT+AGG | + | chr8_3:12673264-12673283 | Msa1277410:intron | 35.0% |
| ! | CATGTCTTTAAAGAAGGTAG+GGG | + | chr8_3:12673266-12673285 | Msa1277410:intron | 35.0% |
| GAGTTGCTGAAAAAAACTAC+GGG | - | chr8_3:12673364-12673383 | None:intergenic | 35.0% | |
| ! | AATCTTCTGGTGTTTTACAC+AGG | + | chr8_3:12673521-12673540 | Msa1277410:intron | 35.0% |
| ! | ATCTTCTGGTGTTTTACACA+GGG | + | chr8_3:12673522-12673541 | Msa1277410:intron | 35.0% |
| !! | TGATGGAAAAGTACTATGTC+GGG | + | chr8_3:12673600-12673619 | Msa1277410:CDS | 35.0% |
| CTTATGGTAGATGCTTGAAT+TGG | - | chr8_3:12673677-12673696 | None:intergenic | 35.0% | |
| ! | AGAAGATTGATTGCTGCTTA+TGG | - | chr8_3:12673693-12673712 | None:intergenic | 35.0% |
| ATAAGCAGCAATCAATCTTC+TGG | + | chr8_3:12673692-12673711 | Msa1277410:CDS | 35.0% | |
| !!! | GGCTATAGTTTTAGACTCTT+TGG | + | chr8_3:12673836-12673855 | Msa1277410:three_prime_UTR | 35.0% |
| ! | ACATAAGGCAGTGTTCTTTT+TGG | + | chr8_3:12673894-12673913 | Msa1277410:three_prime_UTR | 35.0% |
| !!! | TTGGTGATGAGTTTTGAGAC+AGG | - | chr8_3:12669239-12669258 | None:intergenic | 40.0% |
| ! | GACTTTAACCTTTGAGGATG+TGG | + | chr8_3:12669463-12669482 | Msa1277410:CDS | 40.0% |
| ! | CAAAATACTCTTGTGGACTG+TGG | - | chr8_3:12669946-12669965 | None:intergenic | 40.0% |
| !! | AGTATTAACGAGAGTGTTGC+TGG | - | chr8_3:12670264-12670283 | None:intergenic | 40.0% |
| !! | TGAAGTGTTGGGACATACAT+TGG | + | chr8_3:12670310-12670329 | Msa1277410:intron | 40.0% |
| ACAGGGGGTTAATAGACATT+TGG | - | chr8_3:12670493-12670512 | None:intergenic | 40.0% | |
| TATTAACCCCCTGTTATGAG+AGG | + | chr8_3:12670499-12670518 | Msa1277410:intron | 40.0% | |
| TTCCTTACCTCTCATAACAG+GGG | - | chr8_3:12670509-12670528 | None:intergenic | 40.0% | |
| GTTCCTTACCTCTCATAACA+GGG | - | chr8_3:12670510-12670529 | None:intergenic | 40.0% | |
| AGTTCCTTACCTCTCATAAC+AGG | - | chr8_3:12670511-12670530 | None:intergenic | 40.0% | |
| AGGTAAGGAACTATGATGCA+CGG | + | chr8_3:12670519-12670538 | Msa1277410:intron | 40.0% | |
| !!! | GTGAGGATAATGGGAGTTTT+AGG | + | chr8_3:12670671-12670690 | Msa1277410:intron | 40.0% |
| !!! | TAATGGGAGTTTTAGGCACA+AGG | + | chr8_3:12670678-12670697 | Msa1277410:intron | 40.0% |
| GACTTTAGACGCTAGAATAC+TGG | - | chr8_3:12671536-12671555 | None:intergenic | 40.0% | |
| AGCCATGTTCACTGAAGTAA+CGG | + | chr8_3:12671640-12671659 | Msa1277410:intron | 40.0% | |
| TTCCGTTACTTCAGTGAACA+TGG | - | chr8_3:12671645-12671664 | None:intergenic | 40.0% | |
| GTGCAGCTGATTATGAAGAT+TGG | - | chr8_3:12671673-12671692 | None:intergenic | 40.0% | |
| GACTCTGCAAAGACACAATT+TGG | + | chr8_3:12671830-12671849 | Msa1277410:intron | 40.0% | |
| AAAGACACAATTTGGCGACA+CGG | + | chr8_3:12671838-12671857 | Msa1277410:intron | 40.0% | |
| AACGACTGCTATGTAGGATT+TGG | + | chr8_3:12671925-12671944 | Msa1277410:intron | 40.0% | |
| TGCAATTTACTCTGAGCACT+TGG | + | chr8_3:12672246-12672265 | Msa1277410:intron | 40.0% | |
| GCAATTTACTCTGAGCACTT+GGG | + | chr8_3:12672247-12672266 | Msa1277410:intron | 40.0% | |
| CAATTTACTCTGAGCACTTG+GGG | + | chr8_3:12672248-12672267 | Msa1277410:intron | 40.0% | |
| ! | AGACAGCAAACTTTAAGGGA+GGG | - | chr8_3:12672280-12672299 | None:intergenic | 40.0% |
| ! | TAGACAGCAAACTTTAAGGG+AGG | - | chr8_3:12672281-12672300 | None:intergenic | 40.0% |
| !! | TCCCTTAAAGTTTGCTGTCT+AGG | + | chr8_3:12672280-12672299 | Msa1277410:intron | 40.0% |
| CCCTAGACAGCAAACTTTAA+GGG | - | chr8_3:12672284-12672303 | None:intergenic | 40.0% | |
| !! | CCCTTAAAGTTTGCTGTCTA+GGG | + | chr8_3:12672281-12672300 | Msa1277410:intron | 40.0% |
| !! | CCTTAAAGTTTGCTGTCTAG+GGG | + | chr8_3:12672282-12672301 | Msa1277410:intron | 40.0% |
| !! | CTTAAAGTTTGCTGTCTAGG+GGG | + | chr8_3:12672283-12672302 | Msa1277410:intron | 40.0% |
| CAAGCCACTGAAATATTCCA+CGG | + | chr8_3:12672312-12672331 | Msa1277410:intron | 40.0% | |
| TACTCCGTGGAATATTTCAG+TGG | - | chr8_3:12672319-12672338 | None:intergenic | 40.0% | |
| TAGTAGCAATGTAGGGACTT+GGG | - | chr8_3:12672382-12672401 | None:intergenic | 40.0% | |
| TTAGTAGCAATGTAGGGACT+TGG | - | chr8_3:12672383-12672402 | None:intergenic | 40.0% | |
| !! | TTGGCTGGTTTATAGACCAA+CGG | + | chr8_3:12672518-12672537 | Msa1277410:intron | 40.0% |
| TTGGTTACTTCGGCAAACTT+CGG | + | chr8_3:12672671-12672690 | Msa1277410:intron | 40.0% | |
| TTTCCATCATTGCTTTCCTG+GGG | - | chr8_3:12672807-12672826 | None:intergenic | 40.0% | |
| GGGATGATCATCCAAAAATG+GGG | - | chr8_3:12673035-12673054 | None:intergenic | 40.0% | |
| CGGGATGATCATCCAAAAAT+GGG | - | chr8_3:12673036-12673055 | None:intergenic | 40.0% | |
| !! | CCATTTTTGGATGATCATCC+CGG | + | chr8_3:12673034-12673053 | Msa1277410:CDS | 40.0% |
| AGACATGAGGCAAAGTTGTT+CGG | - | chr8_3:12673253-12673272 | None:intergenic | 40.0% | |
| CTTCTTATAGGCTATGACAG+AGG | - | chr8_3:12673445-12673464 | None:intergenic | 40.0% | |
| !!! | ACCACCGATTTTGAAGATGT+TGG | + | chr8_3:12673554-12673573 | Msa1277410:CDS | 40.0% |
| GTGGCCAACATCTTCAAAAT+CGG | - | chr8_3:12673561-12673580 | None:intergenic | 40.0% | |
| !! | GATGGAAAAGTACTATGTCG+GGG | + | chr8_3:12673601-12673620 | Msa1277410:CDS | 40.0% |
| GCATTTGCTCTTCAGTACTA+TGG | + | chr8_3:12673767-12673786 | Msa1277410:CDS | 40.0% | |
| CGCAATCTAGCATGAATAAG+AGG | - | chr8_3:12673985-12674004 | None:intergenic | 40.0% | |
| TGACGTCGCAGTAATGATTG+TGG | + | chr8_3:12669995-12670014 | Msa1277410:intron | 45.0% | |
| TCCTTACCTCTCATAACAGG+GGG | - | chr8_3:12670508-12670527 | None:intergenic | 45.0% | |
| TGTCTCCTTGTCTGTTGTGT+CGG | + | chr8_3:12670632-12670651 | Msa1277410:intron | 45.0% | |
| TTATCCTCACCTGTCAAGCA+CGG | - | chr8_3:12670661-12670680 | None:intergenic | 45.0% | |
| TGCTTGACAGGTGAGGATAA+TGG | + | chr8_3:12670661-12670680 | Msa1277410:intron | 45.0% | |
| GCTTGACAGGTGAGGATAAT+GGG | + | chr8_3:12670662-12670681 | Msa1277410:intron | 45.0% | |
| !! | TCTCAGCTTGTTATGGGAGA+TGG | + | chr8_3:12671024-12671043 | Msa1277410:intron | 45.0% |
| !! | ATGCTAGGTCTTTTCTGGTG+TGG | + | chr8_3:12671240-12671259 | Msa1277410:intron | 45.0% |
| ACTCTTATGGGTAGTGTCTG+CGG | + | chr8_3:12671401-12671420 | Msa1277410:intron | 45.0% | |
| AGCAAAGTCTTCGATATCCC+TGG | + | chr8_3:12671576-12671595 | Msa1277410:intron | 45.0% | |
| CCCCTAGACAGCAAACTTTA+AGG | - | chr8_3:12672285-12672304 | None:intergenic | 45.0% | |
| CGTGGAATATTTCAGTGGCT+TGG | - | chr8_3:12672314-12672333 | None:intergenic | 45.0% | |
| TATTACTCAGTGGGGGACTT+CGG | + | chr8_3:12672344-12672363 | Msa1277410:intron | 45.0% | |
| TCAGTGGTAGAACTGCTTAG+TGG | - | chr8_3:12672416-12672435 | None:intergenic | 45.0% | |
| CAACTGTGCACCTTCCAAAT+GGG | + | chr8_3:12672491-12672510 | Msa1277410:intron | 45.0% | |
| TTCGGACAGGTCATGATATC+TGG | + | chr8_3:12672689-12672708 | Msa1277410:intron | 45.0% | |
| GGGTGCTAGAAAATTCACTC+AGG | - | chr8_3:12672844-12672863 | None:intergenic | 45.0% | |
| CCGGGATGATCATCCAAAAA+TGG | - | chr8_3:12673037-12673056 | None:intergenic | 45.0% | |
| ! | TTTTTGGATGATCATCCCGG+AGG | + | chr8_3:12673037-12673056 | Msa1277410:CDS | 45.0% |
| GAGGCTTTACTTTCTGCTAC+AGG | + | chr8_3:12673064-12673083 | Msa1277410:intron | 45.0% | |
| GGGTAGGAACAAAGTTGTCT+CGG | - | chr8_3:12673232-12673251 | None:intergenic | 45.0% | |
| GACATGAGGCAAAGTTGTTC+GGG | - | chr8_3:12673252-12673271 | None:intergenic | 45.0% | |
| ! | TCTGGTGTTTTACACAGGGA+AGG | + | chr8_3:12673526-12673545 | Msa1277410:intron | 45.0% |
| GCCAACATCTTCAAAATCGG+TGG | - | chr8_3:12673558-12673577 | None:intergenic | 45.0% | |
| !! | GATGCTTGAATTGGTGCTGT+TGG | - | chr8_3:12673668-12673687 | None:intergenic | 45.0% |
| GTTGAAGTTCTTGCAGTACC+TGG | + | chr8_3:12673721-12673740 | Msa1277410:CDS | 45.0% | |
| GCAGATCCCAATATCAGCAA+CGG | - | chr8_3:12673749-12673768 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTCAATTTTTTT+TGG | + | chr8_3:12670089-12670108 | Msa1277410:intron | 5.0% |
| GTGCTTAGCCACATCCTCAA+AGG | - | chr8_3:12669474-12669493 | None:intergenic | 50.0% | |
| TGCGGTCTCAGTAACGATTG+TGG | + | chr8_3:12669760-12669779 | Msa1277410:intron | 50.0% | |
| TCACATCACGAGCGATCTGA+TGG | + | chr8_3:12669783-12669802 | Msa1277410:intron | 50.0% | |
| ACCCCCTGTTATGAGAGGTA+AGG | + | chr8_3:12670504-12670523 | Msa1277410:intron | 50.0% | |
| ACGCGACACGCTTAATGCTA+AGG | - | chr8_3:12670548-12670567 | None:intergenic | 50.0% | |
| GGAATCCGACACAACAGACA+AGG | - | chr8_3:12670640-12670659 | None:intergenic | 50.0% | |
| AGAGTGAAGAACGGTGTGAC+TGG | - | chr8_3:12671115-12671134 | None:intergenic | 50.0% | |
| GCTGCTTACAGGACAAGCTA+TGG | - | chr8_3:12671623-12671642 | None:intergenic | 50.0% | |
| CAGTGAACATGGCTGCTTAC+AGG | - | chr8_3:12671634-12671653 | None:intergenic | 50.0% | |
| TGAAGCACAGACACTGCTGT+TGG | + | chr8_3:12671700-12671719 | Msa1277410:intron | 50.0% | |
| GCATCTGACACATGTCGTAC+CGG | - | chr8_3:12671760-12671779 | None:intergenic | 50.0% | |
| GTACGACATGTGTCAGATGC+AGG | + | chr8_3:12671760-12671779 | Msa1277410:intron | 50.0% | |
| GACACGTGTCTTTGCAGTGA+AGG | - | chr8_3:12671992-12672011 | None:intergenic | 50.0% | |
| GACACTGCAAAGACACGGTT+TGG | - | chr8_3:12672016-12672035 | None:intergenic | 50.0% | |
| GAAAGCAAGGACACTGCTGT+TGG | - | chr8_3:12672132-12672151 | None:intergenic | 50.0% | |
| TTTACTCTGAGCACTTGGGG+AGG | + | chr8_3:12672251-12672270 | Msa1277410:intron | 50.0% | |
| TTACTCTGAGCACTTGGGGA+GGG | + | chr8_3:12672252-12672271 | Msa1277410:intron | 50.0% | |
| ! | CCATTTGGAAGGTGCACAGT+TGG | - | chr8_3:12672493-12672512 | None:intergenic | 50.0% |
| CCAACTGTGCACCTTCCAAA+TGG | + | chr8_3:12672490-12672509 | Msa1277410:intron | 50.0% | |
| CACCTTCCAAATGGGTGGAT+TGG | + | chr8_3:12672499-12672518 | Msa1277410:intron | 50.0% | |
| AGCCAATCCACCCATTTGGA+AGG | - | chr8_3:12672504-12672523 | None:intergenic | 50.0% | |
| !! | TTCCAAATGGGTGGATTGGC+TGG | + | chr8_3:12672503-12672522 | Msa1277410:intron | 50.0% |
| AACCAGCCAATCCACCCATT+TGG | - | chr8_3:12672508-12672527 | None:intergenic | 50.0% | |
| TGTTACTGATGGGACCGAAG+AGG | - | chr8_3:12672549-12672568 | None:intergenic | 50.0% | |
| TACTTCGGCAAACTTCGGAC+AGG | + | chr8_3:12672676-12672695 | Msa1277410:intron | 50.0% | |
| CTTCCCCAGGAAAGCAATGA+TGG | + | chr8_3:12672801-12672820 | Msa1277410:intron | 50.0% | |
| AAGTAAAGCCTCGTCACCTC+CGG | - | chr8_3:12673056-12673075 | None:intergenic | 50.0% | |
| TGAGGCAAAGTTGTTCGGGT+AGG | - | chr8_3:12673248-12673267 | None:intergenic | 50.0% | |
| AGATGTTGGCCACAGTGACT+CGG | + | chr8_3:12673568-12673587 | Msa1277410:CDS | 50.0% | |
| ! | TGACTCGGCAACAGAGATGA+TGG | + | chr8_3:12673583-12673602 | Msa1277410:CDS | 50.0% |
| !! | GGAAAAGTACTATGTCGGGG+AGG | + | chr8_3:12673604-12673623 | Msa1277410:CDS | 50.0% |
| GGATTGTTCTTAGCTGCTGC+TGG | - | chr8_3:12673647-12673666 | None:intergenic | 50.0% | |
| !! | CTGGTGCCGTTGCTGATATT+GGG | + | chr8_3:12673740-12673759 | Msa1277410:CDS | 50.0% |
| GCGATCTGATGGAGCTGATG+TGG | + | chr8_3:12669794-12669813 | Msa1277410:intron | 55.0% | |
| CCTCGATTGTTGTCACGCTG+CGG | + | chr8_3:12669817-12669836 | Msa1277410:intron | 55.0% | |
| TGTCGGATTCCGTGCTTGAC+AGG | + | chr8_3:12670649-12670668 | Msa1277410:intron | 55.0% | |
| GATTCCGTGCTTGACAGGTG+AGG | + | chr8_3:12670654-12670673 | Msa1277410:intron | 55.0% | |
| CAGCAGTGTCTGTGCTTCAG+AGG | - | chr8_3:12671699-12671718 | None:intergenic | 55.0% | |
| AGCACAGACACTGCTGTTGG+TGG | + | chr8_3:12671703-12671722 | Msa1277410:intron | 55.0% | |
| GCACAGACACTGCTGTTGGT+GGG | + | chr8_3:12671704-12671723 | Msa1277410:intron | 55.0% | |
| CGACATGTGTCAGATGCAGG+TGG | + | chr8_3:12671763-12671782 | Msa1277410:intron | 55.0% | |
| CATGTGTCAGATGCAGGTGG+CGG | + | chr8_3:12671766-12671785 | Msa1277410:intron | 55.0% | |
| GCAGCGACACTGCAAAGACA+CGG | - | chr8_3:12672021-12672040 | None:intergenic | 55.0% | |
| ! | GTCGTACTGGTGTCTGACAC+CGG | + | chr8_3:12672096-12672115 | Msa1277410:intron | 55.0% |
| ! | TCGTACTGGTGTCTGACACC+GGG | + | chr8_3:12672097-12672116 | Msa1277410:intron | 55.0% |
| ! | TGCTGTTGGTGGACATGTCC+CGG | - | chr8_3:12672118-12672137 | None:intergenic | 55.0% |
| AGCAAGGACACTGCTGTTGG+TGG | - | chr8_3:12672129-12672148 | None:intergenic | 55.0% | |
| TTGGCGACATGGGAATCAGC+AGG | - | chr8_3:12672474-12672493 | None:intergenic | 55.0% | |
| AGGTGCACAGTTGGCGACAT+GGG | - | chr8_3:12672484-12672503 | None:intergenic | 55.0% | |
| AAGGTGCACAGTTGGCGACA+TGG | - | chr8_3:12672485-12672504 | None:intergenic | 55.0% | |
| CTGTGCACCTTCCAAATGGG+TGG | + | chr8_3:12672494-12672513 | Msa1277410:intron | 55.0% | |
| GACCAACGGATCTGCCTCTT+CGG | + | chr8_3:12672532-12672551 | Msa1277410:intron | 55.0% | |
| AGTAAAGCCTCGTCACCTCC+GGG | - | chr8_3:12673055-12673074 | None:intergenic | 55.0% | |
| TCTCTGTTGCCGAGTCACTG+TGG | - | chr8_3:12673580-12673599 | None:intergenic | 55.0% | |
| ! | AGCTGCTGCTGGAAGAGTGT+TGG | - | chr8_3:12673636-12673655 | None:intergenic | 55.0% |
| CCAATATCAGCAACGGCACC+AGG | - | chr8_3:12673742-12673761 | None:intergenic | 55.0% | |
| !! | CCTGGTGCCGTTGCTGATAT+TGG | + | chr8_3:12673739-12673758 | Msa1277410:CDS | 55.0% |
| CCGCAGCGTGACAACAATCG+AGG | - | chr8_3:12669820-12669839 | None:intergenic | 60.0% | |
| !! | TGCTGTTGGTGGGCTTGTCC+CGG | + | chr8_3:12671714-12671733 | Msa1277410:intron | 60.0% |
| GTACGACACGTGCCAGATGC+AGG | - | chr8_3:12672083-12672102 | None:intergenic | 60.0% | |
| GCATCTGGCACGTGTCGTAC+TGG | + | chr8_3:12672083-12672102 | Msa1277410:intron | 60.0% | |
| TGGGGGACTTCGGCACATCA+TGG | + | chr8_3:12672354-12672373 | Msa1277410:intron | 60.0% | |
| GACCGAAGAGGCAGATCCGT+TGG | - | chr8_3:12672537-12672556 | None:intergenic | 60.0% | |
| TGATCATCCCGGAGGTGACG+AGG | + | chr8_3:12673045-12673064 | Msa1277410:intron | 60.0% | |
| !! | TGGTGGGCTTGTCCCGGTGT+CGG | + | chr8_3:12671720-12671739 | Msa1277410:intron | 65.0% |
| TCTGACGCGTGTCCGACACC+GGG | - | chr8_3:12671735-12671754 | None:intergenic | 65.0% | |
| GTCTGACGCGTGTCCGACAC+CGG | - | chr8_3:12671736-12671755 | None:intergenic | 65.0% | |
| GTCGGACACGCGTCAGACAC+CGG | + | chr8_3:12671738-12671757 | Msa1277410:intron | 65.0% | |
| CACGTGCCAGATGCAGGTGG+CGG | - | chr8_3:12672077-12672096 | None:intergenic | 65.0% | |
| CGACACGTGCCAGATGCAGG+TGG | - | chr8_3:12672080-12672099 | None:intergenic | 65.0% | |
| GGGACACCGCCACCTGCATC+TGG | + | chr8_3:12672068-12672087 | Msa1277410:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 12669197 | 12674179 | 12669197 | ID=Msa1277410;Name=Msa1277410 |
| chr8_3 | mRNA | 12669197 | 12674179 | 12669197 | ID=Msa1277410-mRNA-1;Parent=Msa1277410;Name=Msa1277410-mRNA-1;_AED=0.03;_eAED=0.03;_QI=87|0.66|0.75|1|0.33|0.75|4|362|133 |
| chr8_3 | exon | 12669197 | 12669274 | 12669197 | ID=Msa1277410-mRNA-1:exon:5098;Parent=Msa1277410-mRNA-1 |
| chr8_3 | exon | 12669437 | 12669532 | 12669437 | ID=Msa1277410-mRNA-1:exon:5099;Parent=Msa1277410-mRNA-1 |
| chr8_3 | exon | 12673019 | 12673058 | 12673019 | ID=Msa1277410-mRNA-1:exon:5100;Parent=Msa1277410-mRNA-1 |
| chr8_3 | exon | 12673543 | 12674179 | 12673543 | ID=Msa1277410-mRNA-1:exon:5101;Parent=Msa1277410-mRNA-1 |
| chr8_3 | five_prime_UTR | 12669197 | 12669274 | 12669197 | ID=Msa1277410-mRNA-1:five_prime_utr;Parent=Msa1277410-mRNA-1 |
| chr8_3 | five_prime_UTR | 12669437 | 12669445 | 12669437 | ID=Msa1277410-mRNA-1:five_prime_utr;Parent=Msa1277410-mRNA-1 |
| chr8_3 | CDS | 12669446 | 12669532 | 12669446 | ID=Msa1277410-mRNA-1:cds;Parent=Msa1277410-mRNA-1 |
| chr8_3 | CDS | 12673019 | 12673058 | 12673019 | ID=Msa1277410-mRNA-1:cds;Parent=Msa1277410-mRNA-1 |
| chr8_3 | CDS | 12673543 | 12673817 | 12673543 | ID=Msa1277410-mRNA-1:cds;Parent=Msa1277410-mRNA-1 |
| chr8_3 | three_prime_UTR | 12673818 | 12674179 | 12673818 | ID=Msa1277410-mRNA-1:three_prime_utr;Parent=Msa1277410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
