Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404910 | XP_013459620.1 | 96.463 | 311 | 11 | 0 | 1 | 311 | 1 | 311 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404910 | sp|Q9FNN2|WDR26_ARATH | 44.444 | 297 | 148 | 6 | 1 | 283 | 1 | 294 | 7.79e-69 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404910 | A0A072UW48 | 96.463 | 311 | 11 | 0 | 1 | 311 | 1 | 311 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027890 | Msa0404910 | 0.811828 | 5.759241e-51 | -8.615850e-47 |
| Msa0068020 | Msa0404910 | 0.816189 | 6.288077e-52 | -8.615850e-47 |
| Msa0086420 | Msa0404910 | 0.823996 | 1.025217e-53 | -8.615850e-47 |
| Msa0148080 | Msa0404910 | 0.826079 | 3.302502e-54 | -8.615850e-47 |
| Msa0159420 | Msa0404910 | 0.805631 | 1.216342e-49 | -8.615850e-47 |
| Msa0191070 | Msa0404910 | 0.812764 | 3.597475e-51 | -8.615850e-47 |
| Msa0204960 | Msa0404910 | 0.807780 | 4.275455e-50 | -8.615850e-47 |
| Msa0217670 | Msa0404910 | 0.815464 | 9.120502e-52 | -8.615850e-47 |
| Msa0232790 | Msa0404910 | 0.809656 | 1.699003e-50 | -8.615850e-47 |
| Msa0385500 | Msa0404910 | 0.817090 | 3.948338e-52 | -8.615850e-47 |
| Msa0404910 | Msa0549450 | 0.807290 | 5.432023e-50 | -8.615850e-47 |
| Msa0404910 | Msa0676130 | 0.801663 | 8.095753e-49 | -8.615850e-47 |
| Msa0404910 | Msa0741440 | 0.804739 | 1.869504e-49 | -8.615850e-47 |
| Msa0404910 | Msa0831100 | 0.800191 | 1.618159e-48 | -8.615850e-47 |
| Msa0404910 | Msa1305660 | 0.805235 | 1.472190e-49 | -8.615850e-47 |
| Msa0404910 | Msa1316360 | 0.809814 | 1.570634e-50 | -8.615850e-47 |
| Msa0404910 | Msa1341060 | 0.807575 | 4.727030e-50 | -8.615850e-47 |
| Msa0404910 | Msa1346840 | 0.804894 | 1.735264e-49 | -8.615850e-47 |
| Msa0296790 | Msa0404910 | 0.805654 | 1.202355e-49 | -8.615850e-47 |
| Msa0318680 | Msa0404910 | 0.811133 | 8.152985e-51 | -8.615850e-47 |
| Msa0358770 | Msa0404910 | 0.863935 | 1.745332e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404910 | MtrunA17_Chr3g0095471 | 96.463 | 311 | 11 | 0 | 1 | 311 | 1 | 311 | 0.0 | 612 |
| Msa0404910 | MtrunA17_Chr3g0095501 | 65.744 | 289 | 90 | 3 | 1 | 281 | 1 | 288 | 1.12e-112 | 338 |
| Msa0404910 | MtrunA17_Chr5g0442391 | 57.785 | 289 | 107 | 5 | 1 | 281 | 1 | 282 | 1.83e-91 | 283 |
| Msa0404910 | MtrunA17_Chr1g0183051 | 31.731 | 208 | 133 | 3 | 46 | 252 | 7 | 206 | 2.87e-23 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404910 | AT5G08560.1 | 44.444 | 297 | 148 | 6 | 1 | 283 | 1 | 294 | 7.92e-70 | 227 |
| Msa0404910 | AT5G08560.2 | 44.444 | 297 | 148 | 6 | 1 | 283 | 1 | 294 | 7.92e-70 | 227 |
| Msa0404910 | AT5G08560.3 | 44.444 | 297 | 148 | 6 | 1 | 283 | 1 | 294 | 7.92e-70 | 227 |
| Msa0404910 | AT5G43920.1 | 33.333 | 240 | 152 | 5 | 46 | 281 | 7 | 242 | 1.04e-26 | 110 |
Find 84 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGCCAAGGTGGTTCTTC+CGG | 0.265995 | 3_2:+38176493 | Msa0404910:CDS |
| ATTTGTATCTAGGCAGTCTT+TGG | 0.284144 | 3_2:+38175921 | Msa0404910:intron |
| CTGGCCAAGGTGGTTCTTCC+GGG | 0.287686 | 3_2:+38176494 | Msa0404910:CDS |
| AACTTGTCCAGAGCTGATTT+TGG | 0.291966 | 3_2:+38176772 | Msa0404910:CDS |
| GAGGAGGAGGGGTTCGAAAT+AGG | 0.313413 | 3_2:-38176879 | None:intergenic |
| ACCTAATAGTTCATCTTCTA+TGG | 0.313662 | 3_2:+38176021 | Msa0404910:CDS |
| GTCGTTCCCTTCGGCTGATC+GGG | 0.315302 | 3_2:-38176083 | None:intergenic |
| TGTTGTTGGTTATTATTTCA+TGG | 0.318147 | 3_2:+38175952 | Msa0404910:exon |
| GAAGTATAAGCTTGATTAGT+AGG | 0.346896 | 3_2:-38176721 | None:intergenic |
| CTGTTTATGCAGCAAGTACT+TGG | 0.358690 | 3_2:+38176250 | Msa0404910:CDS |
| AGCAAGTACTTGGCGGTGAT+TGG | 0.361938 | 3_2:+38176260 | Msa0404910:CDS |
| CTAGCCACATTGAAACAAAT+TGG | 0.364435 | 3_2:+38176292 | Msa0404910:CDS |
| CCAATCGCCTTCTTCTGCTT+TGG | 0.374720 | 3_2:+38174321 | Msa0404910:five_prime_UTR |
| CCGATGAGTGATCGGTGATA+TGG | 0.388214 | 3_2:-38174393 | None:intergenic |
| CGTCGTTCCCTTCGGCTGAT+CGG | 0.395480 | 3_2:-38176084 | None:intergenic |
| TCTTCTATGGAGCACGTTGT+AGG | 0.395510 | 3_2:+38176034 | Msa0404910:CDS |
| TGAGCTTATTGATGGGGATA+AGG | 0.407133 | 3_2:+38176375 | Msa0404910:CDS |
| GTTGTTGGTTATTATTTCAT+GGG | 0.409381 | 3_2:+38175953 | Msa0404910:exon |
| GACGAAGTTGTTGGCACAAA+AGG | 0.411543 | 3_2:+38176103 | Msa0404910:CDS |
| ACCGATCACTCATCGGAATC+CGG | 0.415091 | 3_2:+38174400 | Msa0404910:five_prime_UTR |
| TCCATAGAAGATGAACTATT+AGG | 0.439662 | 3_2:-38176022 | None:intergenic |
| GAAAAGAGAAATCAGTTTGA+GGG | 0.443888 | 3_2:+38174360 | Msa0404910:five_prime_UTR |
| TTTAAAATCTATTGAGGAGG+AGG | 0.444056 | 3_2:-38176892 | None:intergenic |
| AGAAAAGAGAAATCAGTTTG+AGG | 0.444204 | 3_2:+38174359 | Msa0404910:five_prime_UTR |
| TCCTGCTTCATGTCACCCTC+TGG | 0.448042 | 3_2:+38176475 | Msa0404910:CDS |
| AAATCTTCCAAAATCAGCTC+TGG | 0.468825 | 3_2:-38176779 | None:intergenic |
| AGGCTCAACAAGTGACTTGA+TGG | 0.473288 | 3_2:+38176054 | Msa0404910:CDS |
| ACCAAGAGAATACATCGCTT+TGG | 0.476220 | 3_2:-38176161 | None:intergenic |
| TTAAAATCTATTGAGGAGGA+GGG | 0.486898 | 3_2:-38176891 | None:intergenic |
| TGTATCTAGGCAGTCTTTGG+AGG | 0.489612 | 3_2:+38175924 | Msa0404910:intron |
| TTCATGTCACCCTCTGGCCA+AGG | 0.491036 | 3_2:+38176481 | Msa0404910:CDS |
| AACAACTTCGTCGTTCCCTT+CGG | 0.493389 | 3_2:-38176092 | None:intergenic |
| ACATAATTTAAAATCTATTG+AGG | 0.496725 | 3_2:-38176898 | None:intergenic |
| GCAAGTACTTGGCGGTGATT+GGG | 0.500806 | 3_2:+38176261 | Msa0404910:CDS |
| AGAAGATGAAAGCATCGTTA+AGG | 0.501049 | 3_2:+38176318 | Msa0404910:CDS |
| ACCAAAGCGATGTATTCTCT+TGG | 0.502163 | 3_2:+38176160 | Msa0404910:CDS |
| GAACACCTAGAGGAGGAGTC+TGG | 0.502621 | 3_2:+38176199 | Msa0404910:CDS |
| TTCCTTGTGTCGCAACGCGT+TGG | 0.514667 | 3_2:+38176651 | Msa0404910:CDS |
| ATTTGTCAGTACTGCTGAAA+GGG | 0.515762 | 3_2:+38176798 | Msa0404910:CDS |
| TGTTTCTGATGATAACGAAT+CGG | 0.517284 | 3_2:+38176747 | Msa0404910:CDS |
| GCCAGAGGGTGACATGAAGC+AGG | 0.519258 | 3_2:-38176476 | None:intergenic |
| ACGAAGTTGTTGGCACAAAA+GGG | 0.520425 | 3_2:+38176104 | Msa0404910:CDS |
| ATCCAACGCGTTGCGACACA+AGG | 0.527126 | 3_2:-38176653 | None:intergenic |
| TGCCCTTACAAAATCTCGCC+CGG | 0.534345 | 3_2:-38176512 | None:intergenic |
| TCGTCATGTTCAGATGACTT+TGG | 0.542727 | 3_2:+38176685 | Msa0404910:CDS |
| CCAAAGCAGAAGAAGGCGAT+TGG | 0.543283 | 3_2:-38174321 | None:intergenic |
| TCAGGTATCATTACAGTCGA+GGG | 0.553135 | 3_2:-38176577 | None:intergenic |
| GAAGGGAACGACGAAGTTGT+TGG | 0.555815 | 3_2:+38176094 | Msa0404910:CDS |
| GTATGCCAGACTCCTCCTCT+AGG | 0.556041 | 3_2:-38176204 | None:intergenic |
| CAAGGAAGCTACTCGTTCCA+TGG | 0.556398 | 3_2:-38176635 | None:intergenic |
| AGCTACTCGTTCCATGGTGA+GGG | 0.556455 | 3_2:-38176629 | None:intergenic |
| TTCAGGTATCATTACAGTCG+AGG | 0.557702 | 3_2:-38176578 | None:intergenic |
| TTTATGCAGCAAGTACTTGG+CGG | 0.558318 | 3_2:+38176253 | Msa0404910:CDS |
| GTTGGTTATTATTTCATGGG+AGG | 0.563350 | 3_2:+38175956 | Msa0404910:exon |
| GCTCCGCCCCGATCAGCCGA+AGG | 0.564526 | 3_2:+38176076 | Msa0404910:CDS |
| TAAAATCTATTGAGGAGGAG+GGG | 0.564663 | 3_2:-38176890 | None:intergenic |
| TTATTATTTCATGGGAGGTG+TGG | 0.569082 | 3_2:+38175961 | Msa0404910:exon |
| CTGCTCCAATATTAAAAGTG+AGG | 0.572912 | 3_2:-38176344 | None:intergenic |
| AGCAGAAGAAGGCGATTGGA+TGG | 0.573629 | 3_2:-38174317 | None:intergenic |
| GAAGAACCACCTTGGCCAGA+GGG | 0.573757 | 3_2:-38176490 | None:intergenic |
| AAGCTACTCGTTCCATGGTG+AGG | 0.576410 | 3_2:-38176630 | None:intergenic |
| GCCGGATTCCGATGAGTGAT+CGG | 0.577293 | 3_2:-38174401 | None:intergenic |
| GATTTGTCAGTACTGCTGAA+AGG | 0.578338 | 3_2:+38176797 | Msa0404910:CDS |
| GCACTTACCAAAGCAGAAGA+AGG | 0.585738 | 3_2:-38174328 | None:intergenic |
| CCATATCACCGATCACTCAT+CGG | 0.587861 | 3_2:+38174393 | Msa0404910:five_prime_UTR |
| ATGTCACCCTCTGGCCAAGG+TGG | 0.595449 | 3_2:+38176484 | Msa0404910:CDS |
| TCGTTCCCTTCGGCTGATCG+GGG | 0.602007 | 3_2:-38176082 | None:intergenic |
| AAAAGCGATCTGAAGTTCGC+CGG | 0.603308 | 3_2:-38174419 | None:intergenic |
| TATACCAATTTGTTTCAATG+TGG | 0.605452 | 3_2:-38176296 | None:intergenic |
| CTCGCCCGGAAGAACCACCT+TGG | 0.608997 | 3_2:-38176498 | None:intergenic |
| CTCCGCCCCGATCAGCCGAA+GGG | 0.614039 | 3_2:+38176077 | Msa0404910:CDS |
| TAATTTAAAATCTATTGAGG+AGG | 0.624087 | 3_2:-38176895 | None:intergenic |
| TTTACCGCAGACGAATTCAA+AGG | 0.627122 | 3_2:-38176226 | None:intergenic |
| GGAAGAACCACCTTGGCCAG+AGG | 0.628654 | 3_2:-38176491 | None:intergenic |
| TGTCAGTACTGCTGAAAGGG+TGG | 0.632691 | 3_2:+38176801 | Msa0404910:CDS |
| TCGAGGCATTGAATACATTG+AGG | 0.634411 | 3_2:+38176401 | Msa0404910:CDS |
| CAGGTATCATTACAGTCGAG+GGG | 0.643753 | 3_2:-38176576 | None:intergenic |
| TTCCCTTCGGCTGATCGGGG+CGG | 0.644020 | 3_2:-38176079 | None:intergenic |
| GAGTGGGGAACACCTAGAGG+AGG | 0.656225 | 3_2:+38176192 | Msa0404910:CDS |
| CATACCTTTGAATTCGTCTG+CGG | 0.656627 | 3_2:+38176222 | Msa0404910:CDS |
| AAATCGGTTGAAACTGCTGG+AGG | 0.679706 | 3_2:+38176537 | Msa0404910:CDS |
| AAAGAGTGGGGAACACCTAG+AGG | 0.683816 | 3_2:+38176189 | Msa0404910:CDS |
| AGTTGAACAAGCCCTCACCA+TGG | 0.691356 | 3_2:+38176618 | Msa0404910:CDS |
| TGATGGGGATAAGGTCATCG+AGG | 0.725311 | 3_2:+38176384 | Msa0404910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTATTTTTTT+TGG | - | chr3_2:38174770-38174789 | None:intergenic | 0.0% |
| !!! | TTCAATTTTTTACTTAATTT+AGG | + | chr3_2:38174590-38174609 | Msa0404910:intron | 10.0% |
| !!! | TCAATTTTTTACTTAATTTA+GGG | + | chr3_2:38174591-38174610 | Msa0404910:intron | 10.0% |
| !! | TAAAATAAAAAAAAAACATG+TGG | + | chr3_2:38174777-38174796 | Msa0404910:intron | 10.0% |
| !!! | AAGTTATTATTTTAGTTTTA+TGG | + | chr3_2:38175807-38175826 | Msa0404910:intron | 10.0% |
| !! | TATTAAGCCTTAATTATTTA+GGG | + | chr3_2:38174954-38174973 | Msa0404910:intron | 15.0% |
| !!! | AAAAAAAGAAAGTGTTTAAT+TGG | + | chr3_2:38175009-38175028 | Msa0404910:intron | 15.0% |
| !!! | AAAAAAGAAAGTGTTTAATT+GGG | + | chr3_2:38175010-38175029 | Msa0404910:intron | 15.0% |
| !! | ATAACTTCACAATAATAATA+AGG | - | chr3_2:38175794-38175813 | None:intergenic | 15.0% |
| !!! | AAGAAGAAAAGTATAAGAAT+CGG | - | chr3_2:38174498-38174517 | None:intergenic | 20.0% |
| !!! | TTCTTATACTTTTCTTCTTT+CGG | + | chr3_2:38174499-38174518 | Msa0404910:intron | 20.0% |
| !!! | AATTTAGGGTTTATGAATAT+AGG | + | chr3_2:38174605-38174624 | Msa0404910:intron | 20.0% |
| !!! | ATTTAGGGTTTATGAATATA+GGG | + | chr3_2:38174606-38174625 | Msa0404910:intron | 20.0% |
| !!! | TATTTTATTTTTTTTGGCCT+GGG | - | chr3_2:38174764-38174783 | None:intergenic | 20.0% |
| !!! | TTATTTTATTTTTTTTGGCC+TGG | - | chr3_2:38174765-38174784 | None:intergenic | 20.0% |
| !!! | GTTTTGTAGTTTTTTTTCTT+AGG | + | chr3_2:38174888-38174907 | Msa0404910:intron | 20.0% |
| !! | CTATTAAGCCTTAATTATTT+AGG | + | chr3_2:38174953-38174972 | Msa0404910:intron | 20.0% |
| !!! | AGCATATTTTTAAAAGATCA+TGG | + | chr3_2:38175629-38175648 | Msa0404910:intron | 20.0% |
| !!! | GCATATTTTTAAAAGATCAT+GGG | + | chr3_2:38175630-38175649 | Msa0404910:intron | 20.0% |
| !!! | AAATTTTTTGAGCTTATTGA+TGG | + | chr3_2:38176367-38176386 | Msa0404910:CDS | 20.0% |
| !!! | AATTTTTTGAGCTTATTGAT+GGG | + | chr3_2:38176368-38176387 | Msa0404910:CDS | 20.0% |
| !! | TGGTATAGAAATGTGTTTTA+CGG | - | chr3_2:38174300-38174319 | None:intergenic | 25.0% |
| ! | GTTTATGAATATAGGGTTTA+GGG | + | chr3_2:38174613-38174632 | Msa0404910:intron | 25.0% |
| ! | GCTTAATCCCTAAATAATTA+AGG | - | chr3_2:38174964-38174983 | None:intergenic | 25.0% |
| !! | AGTTTACATGTGTAATTTGT+TGG | + | chr3_2:38175388-38175407 | Msa0404910:intron | 25.0% |
| ! | AAAATATAACACTGTTAGAC+TGG | - | chr3_2:38175661-38175680 | None:intergenic | 25.0% |
| !! | TCTAACAGTGTTATATTTTG+AGG | + | chr3_2:38175662-38175681 | Msa0404910:intron | 25.0% |
| !!! | CTAACAGTGTTATATTTTGA+GGG | + | chr3_2:38175663-38175682 | Msa0404910:intron | 25.0% |
| ! | TTTGGTCATTAAAAAACTAG+AGG | + | chr3_2:38175725-38175744 | Msa0404910:intron | 25.0% |
| ! | TTGGTCATTAAAAAACTAGA+GGG | + | chr3_2:38175726-38175745 | Msa0404910:intron | 25.0% |
| !!! | AGCATTTTGAAACACATATT+TGG | - | chr3_2:38175837-38175856 | None:intergenic | 25.0% |
| ! | TCATGTAGAAATTTGTATCT+AGG | + | chr3_2:38175911-38175930 | Msa0404910:intron | 25.0% |
| !! | TGTTGTTGGTTATTATTTCA+TGG | + | chr3_2:38175952-38175971 | Msa0404910:exon | 25.0% |
| !! | GTTGTTGGTTATTATTTCAT+GGG | + | chr3_2:38175953-38175972 | Msa0404910:exon | 25.0% |
| !! | TATACCAATTTGTTTCAATG+TGG | - | chr3_2:38176299-38176318 | None:intergenic | 25.0% |
| !!! | ATTTTTTGAGCTTATTGATG+GGG | + | chr3_2:38176369-38176388 | Msa0404910:CDS | 25.0% |
| !! | ATTTTGTAAGGGCAAAAAAT+CGG | + | chr3_2:38176521-38176540 | Msa0404910:CDS | 25.0% |
| ! | GGTATAGAAATGTGTTTTAC+GGG | - | chr3_2:38174299-38174318 | None:intergenic | 30.0% |
| AGAAAAGAGAAATCAGTTTG+AGG | + | chr3_2:38174359-38174378 | Msa0404910:five_prime_UTR | 30.0% | |
| GAAAAGAGAAATCAGTTTGA+GGG | + | chr3_2:38174360-38174379 | Msa0404910:five_prime_UTR | 30.0% | |
| AAAATGATCAAAGGACTTAC+CGG | - | chr3_2:38174454-38174473 | None:intergenic | 30.0% | |
| TAGGAAGTGAAAATGATCAA+AGG | - | chr3_2:38174463-38174482 | None:intergenic | 30.0% | |
| ! | TTTGATCATTTTCACTTCCT+AGG | + | chr3_2:38174462-38174481 | Msa0404910:intron | 30.0% |
| TTAATGCTAAGTTCTTGCTT+TGG | + | chr3_2:38174549-38174568 | Msa0404910:intron | 30.0% | |
| GGTTTATGAATATAGGGTTT+AGG | + | chr3_2:38174612-38174631 | Msa0404910:intron | 30.0% | |
| ! | AGGGTTTAGGGATTAATTTT+TGG | + | chr3_2:38174625-38174644 | Msa0404910:intron | 30.0% |
| !! | TTTGGCTTAATAGCAGTTTT+CGG | + | chr3_2:38174643-38174662 | Msa0404910:intron | 30.0% |
| AATGCTTTCAATTATGCAGA+CGG | - | chr3_2:38175265-38175284 | None:intergenic | 30.0% | |
| TCGGTAATTATAAACTCAGA+TGG | + | chr3_2:38175350-38175369 | Msa0404910:intron | 30.0% | |
| TTACACATGTAAACTCACAT+TGG | - | chr3_2:38175383-38175402 | None:intergenic | 30.0% | |
| ! | AAGCAATTAAGCAAGGTTTT+TGG | + | chr3_2:38175707-38175726 | Msa0404910:intron | 30.0% |
| TGGTCATTAAAAAACTAGAG+GGG | + | chr3_2:38175727-38175746 | Msa0404910:intron | 30.0% | |
| GTCTTTGTAAAGAGAACATA+CGG | + | chr3_2:38175750-38175769 | Msa0404910:intron | 30.0% | |
| TCTTTGTAAAGAGAACATAC+GGG | + | chr3_2:38175751-38175770 | Msa0404910:intron | 30.0% | |
| ! | AATTTCGTTCTTTTCAAAGC+TGG | - | chr3_2:38175998-38176017 | None:intergenic | 30.0% |
| ACCTAATAGTTCATCTTCTA+TGG | + | chr3_2:38176021-38176040 | Msa0404910:CDS | 30.0% | |
| TCCATAGAAGATGAACTATT+AGG | - | chr3_2:38176025-38176044 | None:intergenic | 30.0% | |
| AAAAGGGAGCTTAAAAAGAA+GGG | + | chr3_2:38176120-38176139 | Msa0404910:CDS | 30.0% | |
| TAAAAAGAAGGGAGTTTGTA+AGG | + | chr3_2:38176131-38176150 | Msa0404910:CDS | 30.0% | |
| ! | AGATGTTCTAATCTCTTTTC+AGG | - | chr3_2:38176598-38176617 | None:intergenic | 30.0% |
| GAAGTATAAGCTTGATTAGT+AGG | - | chr3_2:38176724-38176743 | None:intergenic | 30.0% | |
| ! | TGTTTCTGATGATAACGAAT+CGG | + | chr3_2:38176747-38176766 | Msa0404910:CDS | 30.0% |
| ! | TTTGGATTGTTGTTGTTCAC+TGG | + | chr3_2:38174567-38174586 | Msa0404910:intron | 35.0% |
| TATTGACCAAAATCGCAACT+TGG | - | chr3_2:38174682-38174701 | None:intergenic | 35.0% | |
| TGCTACAGTTGCAAAACTTA+GGG | - | chr3_2:38174734-38174753 | None:intergenic | 35.0% | |
| ! | TTTTGCAACTGTAGCAGTTT+TGG | + | chr3_2:38174738-38174757 | Msa0404910:intron | 35.0% |
| TAGCACGCTTGTAAAATTGT+TGG | + | chr3_2:38174984-38175003 | Msa0404910:intron | 35.0% | |
| AGCACGCTTGTAAAATTGTT+GGG | + | chr3_2:38174985-38175004 | Msa0404910:intron | 35.0% | |
| AACAAGATTCAATGTTGCGT+CGG | + | chr3_2:38175331-38175350 | Msa0404910:intron | 35.0% | |
| CAAAAGTGAAGCTTAAGTCA+GGG | - | chr3_2:38175587-38175606 | None:intergenic | 35.0% | |
| TCAAAAGTGAAGCTTAAGTC+AGG | - | chr3_2:38175588-38175607 | None:intergenic | 35.0% | |
| !! | TAAGCTTCACTTTTGAACCT+TGG | + | chr3_2:38175592-38175611 | Msa0404910:intron | 35.0% |
| !! | ACAGTGTTATATTTTGAGGG+AGG | + | chr3_2:38175666-38175685 | Msa0404910:intron | 35.0% |
| CTTAGTCAAGCAATTAAGCA+AGG | + | chr3_2:38175700-38175719 | Msa0404910:intron | 35.0% | |
| GGTCATTAAAAAACTAGAGG+GGG | + | chr3_2:38175728-38175747 | Msa0404910:intron | 35.0% | |
| ATTTGTATCTAGGCAGTCTT+TGG | + | chr3_2:38175921-38175940 | Msa0404910:intron | 35.0% | |
| GTTGGTTATTATTTCATGGG+AGG | + | chr3_2:38175956-38175975 | Msa0404910:exon | 35.0% | |
| TTATTATTTCATGGGAGGTG+TGG | + | chr3_2:38175961-38175980 | Msa0404910:exon | 35.0% | |
| CAAAAGGGAGCTTAAAAAGA+AGG | + | chr3_2:38176119-38176138 | Msa0404910:CDS | 35.0% | |
| TCTCTTGGTTACAAAAAGAG+TGG | + | chr3_2:38176175-38176194 | Msa0404910:CDS | 35.0% | |
| CTCTTGGTTACAAAAAGAGT+GGG | + | chr3_2:38176176-38176195 | Msa0404910:CDS | 35.0% | |
| TCTTGGTTACAAAAAGAGTG+GGG | + | chr3_2:38176177-38176196 | Msa0404910:CDS | 35.0% | |
| CTAGCCACATTGAAACAAAT+TGG | + | chr3_2:38176292-38176311 | Msa0404910:CDS | 35.0% | |
| !! | AGAAGATGAAAGCATCGTTA+AGG | + | chr3_2:38176318-38176337 | Msa0404910:CDS | 35.0% |
| CTGCTCCAATATTAAAAGTG+AGG | - | chr3_2:38176347-38176366 | None:intergenic | 35.0% | |
| AAAAAATCGGTTGAAACTGC+TGG | + | chr3_2:38176534-38176553 | Msa0404910:CDS | 35.0% | |
| AAATCTTCCAAAATCAGCTC+TGG | - | chr3_2:38176782-38176801 | None:intergenic | 35.0% | |
| ATTTGTCAGTACTGCTGAAA+GGG | + | chr3_2:38176798-38176817 | Msa0404910:CDS | 35.0% | |
| GTATAAGAATCGGAAACTGC+AGG | - | chr3_2:38174488-38174507 | None:intergenic | 40.0% | |
| ! | ATCGCAACTTGGTGAAAGTT+AGG | - | chr3_2:38174671-38174690 | None:intergenic | 40.0% |
| ! | CTTTCACCAAGTTGCGATTT+TGG | + | chr3_2:38174673-38174692 | Msa0404910:intron | 40.0% |
| GCTACAGTTGCAAAACTTAG+GGG | - | chr3_2:38174733-38174752 | None:intergenic | 40.0% | |
| CTGCTACAGTTGCAAAACTT+AGG | - | chr3_2:38174735-38174754 | None:intergenic | 40.0% | |
| AAACATGTGGCACTTCACTT+AGG | + | chr3_2:38174790-38174809 | Msa0404910:intron | 40.0% | |
| AACATGTGGCACTTCACTTA+GGG | + | chr3_2:38174791-38174810 | Msa0404910:intron | 40.0% | |
| AGACCGAGTCAAAATTGGTT+TGG | + | chr3_2:38174828-38174847 | Msa0404910:intron | 40.0% | |
| ! | GACCGAGTCAAAATTGGTTT+GGG | + | chr3_2:38174829-38174848 | Msa0404910:intron | 40.0% |
| !! | ACCGAGTCAAAATTGGTTTG+GGG | + | chr3_2:38174830-38174849 | Msa0404910:intron | 40.0% |
| !!! | TCCCCAAACCAATTTTGACT+CGG | - | chr3_2:38174834-38174853 | None:intergenic | 40.0% |
| ! | TTTTGCACATGTGGCAGTTT+TGG | - | chr3_2:38174857-38174876 | None:intergenic | 40.0% |
| TGCCACATGTGCAAAACTTA+AGG | + | chr3_2:38174861-38174880 | Msa0404910:intron | 40.0% | |
| GCCACATGTGCAAAACTTAA+GGG | + | chr3_2:38174862-38174881 | Msa0404910:intron | 40.0% | |
| CCACATGTGCAAAACTTAAG+GGG | + | chr3_2:38174863-38174882 | Msa0404910:intron | 40.0% | |
| ! | CTTTCCCAAAGTTGCGATTT+TGG | - | chr3_2:38174916-38174935 | None:intergenic | 40.0% |
| ! | TCGCAACTTTGGGAAAGTTA+AGG | + | chr3_2:38174919-38174938 | Msa0404910:intron | 40.0% |
| ! | CGCAACTTTGGGAAAGTTAA+GGG | + | chr3_2:38174920-38174939 | Msa0404910:intron | 40.0% |
| ! | GCAACTTTGGGAAAGTTAAG+GGG | + | chr3_2:38174921-38174940 | Msa0404910:intron | 40.0% |
| GCACGCTTGTAAAATTGTTG+GGG | + | chr3_2:38174986-38175005 | Msa0404910:intron | 40.0% | |
| !! | CTTCACTTTTGAACCTTGGT+AGG | + | chr3_2:38175596-38175615 | Msa0404910:intron | 40.0% |
| TTGTAAAGAGAACATACGGG+AGG | + | chr3_2:38175754-38175773 | Msa0404910:intron | 40.0% | |
| !!! | CTTTGGAGGCATTTTGTTGT+TGG | + | chr3_2:38175938-38175957 | Msa0404910:five_prime_UTR | 40.0% |
| ACGAAGTTGTTGGCACAAAA+GGG | + | chr3_2:38176104-38176123 | Msa0404910:CDS | 40.0% | |
| ACCAAAGCGATGTATTCTCT+TGG | + | chr3_2:38176160-38176179 | Msa0404910:CDS | 40.0% | |
| ACCAAGAGAATACATCGCTT+TGG | - | chr3_2:38176164-38176183 | None:intergenic | 40.0% | |
| CATACCTTTGAATTCGTCTG+CGG | + | chr3_2:38176222-38176241 | Msa0404910:CDS | 40.0% | |
| TTTACCGCAGACGAATTCAA+AGG | - | chr3_2:38176229-38176248 | None:intergenic | 40.0% | |
| CTGTTTATGCAGCAAGTACT+TGG | + | chr3_2:38176250-38176269 | Msa0404910:CDS | 40.0% | |
| TTTATGCAGCAAGTACTTGG+CGG | + | chr3_2:38176253-38176272 | Msa0404910:CDS | 40.0% | |
| !! | GGCTGCCTCACTTTTAATAT+TGG | + | chr3_2:38176339-38176358 | Msa0404910:CDS | 40.0% |
| TGAGCTTATTGATGGGGATA+AGG | + | chr3_2:38176375-38176394 | Msa0404910:CDS | 40.0% | |
| !! | TCGAGGCATTGAATACATTG+AGG | + | chr3_2:38176401-38176420 | Msa0404910:CDS | 40.0% |
| TCAGGTATCATTACAGTCGA+GGG | - | chr3_2:38176580-38176599 | None:intergenic | 40.0% | |
| TTCAGGTATCATTACAGTCG+AGG | - | chr3_2:38176581-38176600 | None:intergenic | 40.0% | |
| TCGTCATGTTCAGATGACTT+TGG | + | chr3_2:38176685-38176704 | Msa0404910:CDS | 40.0% | |
| !! | AACTTGTCCAGAGCTGATTT+TGG | + | chr3_2:38176772-38176791 | Msa0404910:CDS | 40.0% |
| GATTTGTCAGTACTGCTGAA+AGG | + | chr3_2:38176797-38176816 | Msa0404910:CDS | 40.0% | |
| GCACTTACCAAAGCAGAAGA+AGG | - | chr3_2:38174331-38174350 | None:intergenic | 45.0% | |
| CCATATCACCGATCACTCAT+CGG | + | chr3_2:38174393-38174412 | Msa0404910:five_prime_UTR | 45.0% | |
| ! | AAAAGCGATCTGAAGTTCGC+CGG | - | chr3_2:38174422-38174441 | None:intergenic | 45.0% |
| !! | GATCGCTTTTCTTGCTTCTC+CGG | + | chr3_2:38174432-38174451 | Msa0404910:five_prime_UTR | 45.0% |
| ACAGTTGCAAAACTTAGGGG+CGG | - | chr3_2:38174730-38174749 | None:intergenic | 45.0% | |
| AGCGTAGACCGAGTCAAAAT+TGG | + | chr3_2:38174823-38174842 | Msa0404910:intron | 45.0% | |
| ! | CCCCTTAAGTTTTGCACATG+TGG | - | chr3_2:38174866-38174885 | None:intergenic | 45.0% |
| CATGTGCAAAACTTAAGGGG+TGG | + | chr3_2:38174866-38174885 | Msa0404910:intron | 45.0% | |
| AGGAGCCAAAATCGCAACTT+TGG | + | chr3_2:38174908-38174927 | Msa0404910:intron | 45.0% | |
| GGAGCCAAAATCGCAACTTT+GGG | + | chr3_2:38174909-38174928 | Msa0404910:intron | 45.0% | |
| GCTAGCATATCTTCCTACCA+AGG | - | chr3_2:38175612-38175631 | None:intergenic | 45.0% | |
| TAAAGAGAACATACGGGAGG+TGG | + | chr3_2:38175757-38175776 | Msa0404910:intron | 45.0% | |
| TGTATCTAGGCAGTCTTTGG+AGG | + | chr3_2:38175924-38175943 | Msa0404910:intron | 45.0% | |
| TCTTCTATGGAGCACGTTGT+AGG | + | chr3_2:38176034-38176053 | Msa0404910:CDS | 45.0% | |
| AGGCTCAACAAGTGACTTGA+TGG | + | chr3_2:38176054-38176073 | Msa0404910:CDS | 45.0% | |
| AACAACTTCGTCGTTCCCTT+CGG | - | chr3_2:38176095-38176114 | None:intergenic | 45.0% | |
| GACGAAGTTGTTGGCACAAA+AGG | + | chr3_2:38176103-38176122 | Msa0404910:CDS | 45.0% | |
| ! | TTCCGGGCGAGATTTTGTAA+GGG | + | chr3_2:38176510-38176529 | Msa0404910:CDS | 45.0% |
| AAATCGGTTGAAACTGCTGG+AGG | + | chr3_2:38176537-38176556 | Msa0404910:CDS | 45.0% | |
| CAGGTATCATTACAGTCGAG+GGG | - | chr3_2:38176579-38176598 | None:intergenic | 45.0% | |
| AGCAGAAGAAGGCGATTGGA+TGG | - | chr3_2:38174320-38174339 | None:intergenic | 50.0% | |
| CCAAAGCAGAAGAAGGCGAT+TGG | - | chr3_2:38174324-38174343 | None:intergenic | 50.0% | |
| CCAATCGCCTTCTTCTGCTT+TGG | + | chr3_2:38174321-38174340 | Msa0404910:five_prime_UTR | 50.0% | |
| CCGATGAGTGATCGGTGATA+TGG | - | chr3_2:38174396-38174415 | None:intergenic | 50.0% | |
| ACCGATCACTCATCGGAATC+CGG | + | chr3_2:38174400-38174419 | Msa0404910:five_prime_UTR | 50.0% | |
| !! | AACTGTAGCAGTTTTGGCCC+AGG | + | chr3_2:38174744-38174763 | Msa0404910:intron | 50.0% |
| ! | TTGTGCCACTCACTGCAACA+CGG | - | chr3_2:38175108-38175127 | None:intergenic | 50.0% |
| GAAGGGAACGACGAAGTTGT+TGG | + | chr3_2:38176094-38176113 | Msa0404910:CDS | 50.0% | |
| AAAGAGTGGGGAACACCTAG+AGG | + | chr3_2:38176189-38176208 | Msa0404910:CDS | 50.0% | |
| AGCAAGTACTTGGCGGTGAT+TGG | + | chr3_2:38176260-38176279 | Msa0404910:CDS | 50.0% | |
| GCAAGTACTTGGCGGTGATT+GGG | + | chr3_2:38176261-38176280 | Msa0404910:CDS | 50.0% | |
| TGATGGGGATAAGGTCATCG+AGG | + | chr3_2:38176384-38176403 | Msa0404910:CDS | 50.0% | |
| ! | CTTCCGGGCGAGATTTTGTA+AGG | + | chr3_2:38176509-38176528 | Msa0404910:CDS | 50.0% |
| TGCCCTTACAAAATCTCGCC+CGG | - | chr3_2:38176515-38176534 | None:intergenic | 50.0% | |
| AGTTGAACAAGCCCTCACCA+TGG | + | chr3_2:38176618-38176637 | Msa0404910:CDS | 50.0% | |
| AGCTACTCGTTCCATGGTGA+GGG | - | chr3_2:38176632-38176651 | None:intergenic | 50.0% | |
| AAGCTACTCGTTCCATGGTG+AGG | - | chr3_2:38176633-38176652 | None:intergenic | 50.0% | |
| CAAGGAAGCTACTCGTTCCA+TGG | - | chr3_2:38176638-38176657 | None:intergenic | 50.0% | |
| TGTCAGTACTGCTGAAAGGG+TGG | + | chr3_2:38176801-38176820 | Msa0404910:CDS | 50.0% | |
| GCCGGATTCCGATGAGTGAT+CGG | - | chr3_2:38174404-38174423 | None:intergenic | 55.0% | |
| GAATCGGAAACTGCAGGCCT+AGG | - | chr3_2:38174482-38174501 | None:intergenic | 55.0% | |
| GCAACACGGAACTGCGAAGT+CGG | - | chr3_2:38175094-38175113 | None:intergenic | 55.0% | |
| CAGTTCCGTGTTGCAGTGAG+TGG | + | chr3_2:38175100-38175119 | Msa0404910:intron | 55.0% | |
| GAACACCTAGAGGAGGAGTC+TGG | + | chr3_2:38176199-38176218 | Msa0404910:CDS | 55.0% | |
| GTATGCCAGACTCCTCCTCT+AGG | - | chr3_2:38176207-38176226 | None:intergenic | 55.0% | |
| TCCTGCTTCATGTCACCCTC+TGG | + | chr3_2:38176475-38176494 | Msa0404910:CDS | 55.0% | |
| TTCATGTCACCCTCTGGCCA+AGG | + | chr3_2:38176481-38176500 | Msa0404910:CDS | 55.0% | |
| GAAGAACCACCTTGGCCAGA+GGG | - | chr3_2:38176493-38176512 | None:intergenic | 55.0% | |
| TCTGGCCAAGGTGGTTCTTC+CGG | + | chr3_2:38176493-38176512 | Msa0404910:CDS | 55.0% | |
| TTCCTTGTGTCGCAACGCGT+TGG | + | chr3_2:38176651-38176670 | Msa0404910:CDS | 55.0% | |
| ATCCAACGCGTTGCGACACA+AGG | - | chr3_2:38176656-38176675 | None:intergenic | 55.0% | |
| GAGGAGGAGGGGTTCGAAAT+AGG | - | chr3_2:38176882-38176901 | None:intergenic | 55.0% | |
| TCGTTCCCTTCGGCTGATCG+GGG | - | chr3_2:38176085-38176104 | None:intergenic | 60.0% | |
| GTCGTTCCCTTCGGCTGATC+GGG | - | chr3_2:38176086-38176105 | None:intergenic | 60.0% | |
| CGTCGTTCCCTTCGGCTGAT+CGG | - | chr3_2:38176087-38176106 | None:intergenic | 60.0% | |
| GAGTGGGGAACACCTAGAGG+AGG | + | chr3_2:38176192-38176211 | Msa0404910:CDS | 60.0% | |
| GCCAGAGGGTGACATGAAGC+AGG | - | chr3_2:38176479-38176498 | None:intergenic | 60.0% | |
| ATGTCACCCTCTGGCCAAGG+TGG | + | chr3_2:38176484-38176503 | Msa0404910:CDS | 60.0% | |
| GGAAGAACCACCTTGGCCAG+AGG | - | chr3_2:38176494-38176513 | None:intergenic | 60.0% | |
| CTGGCCAAGGTGGTTCTTCC+GGG | + | chr3_2:38176494-38176513 | Msa0404910:CDS | 60.0% | |
| TTCCCTTCGGCTGATCGGGG+CGG | - | chr3_2:38176082-38176101 | None:intergenic | 65.0% | |
| CTCGCCCGGAAGAACCACCT+TGG | - | chr3_2:38176501-38176520 | None:intergenic | 65.0% | |
| CTCCGCCCCGATCAGCCGAA+GGG | + | chr3_2:38176077-38176096 | Msa0404910:CDS | 70.0% | |
| GCTCCGCCCCGATCAGCCGA+AGG | + | chr3_2:38176076-38176095 | Msa0404910:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 38174282 | 38176906 | 38174282 | ID=Msa0404910;Name=Msa0404910 |
| chr3_2 | mRNA | 38174282 | 38176906 | 38174282 | ID=Msa0404910-mRNA-1;Parent=Msa0404910;Name=Msa0404910-mRNA-1;_AED=0.12;_eAED=0.15;_QI=210|0|0.5|1|0|0.5|2|0|311 |
| chr3_2 | exon | 38174282 | 38174453 | 38174282 | ID=Msa0404910-mRNA-1:exon:7581;Parent=Msa0404910-mRNA-1 |
| chr3_2 | exon | 38175933 | 38176906 | 38175933 | ID=Msa0404910-mRNA-1:exon:7582;Parent=Msa0404910-mRNA-1 |
| chr3_2 | five_prime_UTR | 38174282 | 38174453 | 38174282 | ID=Msa0404910-mRNA-1:five_prime_utr;Parent=Msa0404910-mRNA-1 |
| chr3_2 | five_prime_UTR | 38175933 | 38175970 | 38175933 | ID=Msa0404910-mRNA-1:five_prime_utr;Parent=Msa0404910-mRNA-1 |
| chr3_2 | CDS | 38175971 | 38176906 | 38175971 | ID=Msa0404910-mRNA-1:cds;Parent=Msa0404910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
