AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0831100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831100 MtrunA17_Chr5g0396811 99.566 692 3 0 1 692 1 692 0.0 1408
Msa0831100 MtrunA17_Chr6g0488381 94.109 696 39 2 1 695 1 695 0.0 1321
Msa0831100 MtrunA17_Chr4g0066781 65.753 365 107 5 329 691 71 419 2.20e-158 463
Msa0831100 MtrunA17_Chr4g0066781 31.804 327 193 12 10 318 5 319 1.01e-28 119
Msa0831100 MtrunA17_Chr7g0254051 75.083 301 61 5 2 297 3 294 4.89e-155 450
Msa0831100 MtrunA17_Chr7g0254051 29.876 241 134 9 383 616 84 296 9.07e-21 93.6
Msa0831100 MtrunA17_Chr7g0254051 24.111 253 139 6 264 516 86 285 4.79e-11 64.3
Msa0831100 MtrunA17_Chr4g0066771 67.614 352 107 4 329 677 82 429 3.90e-154 453
Msa0831100 MtrunA17_Chr4g0066771 30.383 339 202 11 7 318 2 333 1.12e-28 119
Msa0831100 MtrunA17_Chr4g0003621 85.135 74 11 0 268 341 13 86 1.06e-36 132
Msa0831100 MtrunA17_Chr2g0281221 26.235 324 194 11 92 380 436 749 1.02e-17 87.8
Msa0831100 MtrunA17_Chr2g0281221 25.911 247 172 5 90 325 526 772 7.03e-15 78.6
Msa0831100 MtrunA17_Chr4g0003611 77.551 49 9 1 361 409 2 48 1.19e-17 78.2
Msa0831100 MtrunA17_Chr1g0148901 24.686 478 293 17 63 507 225 668 2.06e-13 73.9
Msa0831100 MtrunA17_Chr1g0148901 21.461 438 283 14 93 506 482 882 4.19e-12 69.7
Msa0831100 MtrunA17_Chr7g0242541 22.711 546 325 17 62 546 360 869 5.68e-13 72.8
Msa0831100 MtrunA17_Chr4g0068341 23.102 303 199 6 90 362 220 518 5.26e-12 69.3
Msa0831100 MtrunA17_Chr6g0460371 25.121 207 144 5 113 313 254 455 4.37e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831100 AT5G41770.1 81.197 702 124 1 2 695 3 704 0.0 1160
Msa0831100 AT5G45990.2 77.339 684 145 2 7 689 4 678 0.0 1075
Msa0831100 AT5G45990.1 77.696 677 141 2 14 689 1 668 0.0 1068
Msa0831100 AT3G13210.1 68.813 699 169 4 1 694 1 655 0.0 941
Msa0831100 AT3G51110.1 74.564 401 99 3 26 423 5 405 0.0 622
Msa0831100 AT3G51110.1 26.346 353 217 11 227 560 73 401 1.08e-19 92.8
Msa0831100 AT3G51110.1 27.541 305 180 12 385 681 73 344 3.95e-19 90.9
Msa0831100 AT4G03430.2 23.892 519 314 16 73 547 369 850 3.09e-17 87.0
Msa0831100 AT4G03430.3 23.892 519 314 16 73 547 369 850 3.09e-17 87.0
Msa0831100 AT4G03430.1 23.892 519 314 16 73 547 369 850 3.09e-17 87.0
Msa0831100 AT5G28740.1 25.382 327 197 14 92 382 424 739 2.41e-16 84.0
Msa0831100 AT1G17760.1 26.316 209 145 5 113 317 254 457 2.51e-13 73.9
Msa0831100 AT3G17040.2 23.284 335 224 13 104 432 181 488 2.26e-11 67.4
Msa0831100 AT3G17040.1 23.284 335 224 13 104 432 215 522 2.70e-11 67.4

Find 182 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGCAGCTAAGTCAATTT+TGG 0.148243 5_4:-4118145 Msa0831100:three_prime_UTR
TCTTCTCTTCTTGAGCTTCT+TGG 0.162393 5_4:+4118586 None:intergenic
ACGGGTGCTCGTCAAATATT+AGG 0.182901 5_4:-4119772 Msa0831100:CDS
TACACGTGCGCGTTCGGTTT+GGG 0.226321 5_4:-4123412 Msa0831100:CDS
TAGGGTTGGGTCTGCATCTT+TGG 0.247775 5_4:+4123722 None:intergenic
AAAACTATATGAAAAGTATT+TGG 0.269243 5_4:-4119566 Msa0831100:CDS
GGAAGAGAGTGTCGGGAATA+AGG 0.273700 5_4:-4122686 Msa0831100:CDS
TAGTATGTTACCTTATCTTT+AGG 0.282919 5_4:+4119730 None:intergenic
TACACTCAATAATTGACTTT+TGG 0.285823 5_4:+4117962 None:intergenic
CTTCCTCTTTCTCTATCGTT+AGG 0.293521 5_4:-4123773 Msa0831100:five_prime_UTR
CTCAACTTGGAGGCTTCATC+TGG 0.300668 5_4:-4118647 Msa0831100:CDS
CTTCTCTTCTTGAGCTTCTT+GGG 0.305265 5_4:+4118587 None:intergenic
TTACACGTGCGCGTTCGGTT+TGG 0.307935 5_4:-4123413 Msa0831100:CDS
CTACTGAAGATGGTTCTTCT+AGG 0.309477 5_4:-4118556 Msa0831100:intron
AGATGAGAGTTTAGAATTAT+CGG 0.314452 5_4:-4118904 Msa0831100:CDS
AGTTCTCATTTGCAAAGATA+TGG 0.344500 5_4:-4119834 Msa0831100:CDS
TTAATCATGCGAGGAATGTT+TGG 0.350016 5_4:-4123311 Msa0831100:CDS
GAGATGCTTGGCAATGTCGC+TGG 0.357091 5_4:-4123225 Msa0831100:CDS
TGCTCCGCTGTGATTTGAAT+TGG 0.358671 5_4:+4123627 None:intergenic
TTCGGTGGAATGTCAGTGTT+TGG 0.362517 5_4:-4123473 Msa0831100:CDS
TCTTTGCAAATGAGAACTTC+TGG 0.364205 5_4:+4119839 None:intergenic
TCAGCTGACGTATTTCAAAC+TGG 0.364851 5_4:+4119800 None:intergenic
AGGATTTAATCCGGAGAGTT+CGG 0.371102 5_4:-4123491 Msa0831100:CDS
CAATGTCGCTGGGGCGAGGC+AGG 0.375002 5_4:-4123214 Msa0831100:CDS
CAAATATTAGGGAATGCTAT+TGG 0.375651 5_4:-4119760 Msa0831100:CDS
GCTTCTTGGGCAGCTTAGAC+TGG 0.380324 5_4:+4118600 None:intergenic
AGAACTTCTGGTGAGGTATC+TGG 0.391393 5_4:+4119851 None:intergenic
GTGGTTTGATTATATAAGAT+TGG 0.396082 5_4:-4122707 Msa0831100:CDS
CAGCTGAGGAGAAGCGATAC+TGG 0.397271 5_4:-4122618 Msa0831100:CDS
ATCCGTTGAATTATGATTCG+TGG 0.398953 5_4:-4122726 Msa0831100:CDS
CGTCATTAAGGAAATGTGTA+AGG 0.403988 5_4:-4117991 Msa0831100:three_prime_UTR
TTGAGAAACAGTATGGTGAT+AGG 0.405534 5_4:-4122813 Msa0831100:CDS
TAATCATGCGAGGAATGTTT+GGG 0.406922 5_4:-4123310 Msa0831100:CDS
TCTCAAATGCCACAAACTTC+CGG 0.412003 5_4:+4122830 None:intergenic
GGCTTCCATGATCTTGAGAT+TGG 0.414299 5_4:+4118275 None:intergenic
TTCCTCTTTCTCTATCGTTA+GGG 0.418812 5_4:-4123772 Msa0831100:five_prime_UTR
ACTTAAGCTACAGTATTTGC+CGG 0.422778 5_4:+4118167 None:intergenic
AGGCATGTCCAATGCTGGTT+GGG 0.424214 5_4:+4119441 None:intergenic
TGATCGAACAAAGCACTTGA+AGG 0.427591 5_4:-4118964 Msa0831100:CDS
GGGATTGAGGATGCTATTGT+TGG 0.433244 5_4:-4122787 Msa0831100:CDS
AAGAAGACATGGCTAAGGTT+TGG 0.439415 5_4:+4123745 None:intergenic
TGCAATTGCCCAACCAGCAT+TGG 0.442244 5_4:-4119449 Msa0831100:CDS
GGGCAATGCTATTAGAGAAA+TGG 0.442491 5_4:-4118670 Msa0831100:CDS
TCATGGAAGCCGCTTACAAA+TGG 0.446443 5_4:-4118263 Msa0831100:CDS
AGATGCTTGGCAATGTCGCT+GGG 0.449067 5_4:-4123224 Msa0831100:CDS
AAAGAGGAAGAAGACGATAC+AGG 0.450856 5_4:+4123786 Msa0831110:CDS
GGAGTTTGAGGAAAGGTGTA+AGG 0.453060 5_4:-4122926 Msa0831100:CDS
TTCGGTTTGGGAACGAGCAT+TGG 0.457130 5_4:-4123400 Msa0831100:CDS
TCAACTTGGAGGCTTCATCT+GGG 0.458678 5_4:-4118646 Msa0831100:CDS
GAGGCTTCATCTGGGGAGCT+AGG 0.458747 5_4:-4118638 Msa0831100:CDS
GATAACCATCCTTGCTGATC+CGG 0.459943 5_4:+4123165 None:intergenic
TGTGGCGTTTGCGGAGTTTG+AGG 0.461569 5_4:-4122938 Msa0831100:CDS
GAGTGAGATAACCTAGGGTT+GGG 0.463081 5_4:+4123709 None:intergenic
CTCGCCGAGTTCGGTTGAAT+CGG 0.463406 5_4:+4123542 None:intergenic
TTGGTTGAATGTGTTTCCTC+GGG 0.468573 5_4:+4118294 None:intergenic
TTGGCAATGTCGCTGGGGCG+AGG 0.468746 5_4:-4123218 Msa0831100:CDS
GGCAGCGCTATATTTATTTG+TGG 0.468806 5_4:-4122597 Msa0831100:intron
TCCAGATTTAAAAGAAGAAA+GGG 0.469041 5_4:-4118690 Msa0831100:CDS
CTCCAGATTTAAAAGAAGAA+AGG 0.471933 5_4:-4118691 Msa0831100:CDS
CGCTGTGATTTGAATTGGAG+CGG 0.473589 5_4:+4123632 None:intergenic
GTGGCATTTGAGAAACAGTA+TGG 0.475591 5_4:-4122820 Msa0831100:CDS
TGCCTGTTTAGAGGTGTTTG+AGG 0.476347 5_4:-4118741 Msa0831100:intron
GGATTTGTACCGGAAGTTTG+TGG 0.478503 5_4:-4122839 Msa0831100:CDS
GTAAGGAGGCAGAGCGTGCT+AGG 0.478780 5_4:-4122909 Msa0831100:CDS
TGGTGATAGGGAAGGGATTG+AGG 0.479307 5_4:-4122800 Msa0831100:CDS
TCAAGCTTCCACGTCCAACT+AGG 0.480728 5_4:-4123671 Msa0831100:CDS
AGACAAGTTTCTACTGAAGA+TGG 0.481734 5_4:-4118566 Msa0831100:CDS
TCATAAACATTCCTCGCCTT+AGG 0.481974 5_4:+4123009 None:intergenic
GAGACGATACTCGCCGAGTT+CGG 0.482763 5_4:+4123533 None:intergenic
CGGGTGCTCGTCAAATATTA+GGG 0.485586 5_4:-4119771 Msa0831100:CDS
TTCAACCAATCTCAAGATCA+TGG 0.485593 5_4:-4118280 Msa0831100:CDS
ATTATCGGAACAAGAACAAA+AGG 0.485892 5_4:-4118889 Msa0831100:CDS
AGGAATTCGAGGATTTAATC+CGG 0.486582 5_4:-4123500 Msa0831100:CDS
CAGTATCGCTTCTCCTCAGC+TGG 0.490512 5_4:+4122619 None:intergenic
AAATCCTCAGCCCTCCCCTT+CGG 0.491990 5_4:+4122856 None:intergenic
GTCATCCTAGGGTTGGTGCT+TGG 0.492213 5_4:-4123071 Msa0831100:CDS
AACAGTATGGTGATAGGGAA+GGG 0.497023 5_4:-4122807 Msa0831100:CDS
AGCAAATTCTTCGTGAAGCT+AGG 0.502033 5_4:-4123608 Msa0831100:CDS
AACTCAGGCATGTCCAATGC+TGG 0.504518 5_4:+4119436 None:intergenic
TAAGATTGGAAGAGAGTGTC+GGG 0.508930 5_4:-4122693 Msa0831100:CDS
ATTGGTTGAATGTGTTTCCT+CGG 0.509385 5_4:+4118293 None:intergenic
CGAGTGAGATAACCTAGGGT+TGG 0.511421 5_4:+4123708 None:intergenic
GAAGAATGGCGAGGTTCCTA+AGG 0.514090 5_4:-4123025 Msa0831100:CDS
GCTGTGATTTGAATTGGAGC+GGG 0.516717 5_4:+4123633 None:intergenic
TGCGGTTACTCTCTTGCCGC+GGG 0.517611 5_4:-4123283 Msa0831100:CDS
CAGCTGACGTATTTCAAACT+GGG 0.517928 5_4:+4119801 None:intergenic
ATGCTATTGTTGGGAAGAGA+AGG 0.518921 5_4:-4122777 Msa0831100:CDS
GTATCGTCTCCGGAAAAGAA+AGG 0.519406 5_4:-4123520 Msa0831100:CDS
GTGGTATAAGTATATTCATA+TGG 0.521111 5_4:-4123250 Msa0831100:CDS
ATTAGAGAAATGGCTCAACT+TGG 0.521804 5_4:-4118660 Msa0831100:CDS
ATCACCGATTCAACCGAACT+CGG 0.523459 5_4:-4123546 Msa0831100:CDS
AATAAGAGTATCTTGTAGCT+TGG 0.524038 5_4:-4118212 Msa0831100:exon
CTCTATGAAGAACTCGATGC+TGG 0.524471 5_4:-4122459 Msa0831100:CDS
AACCCTAACGATAGAGAAAG+AGG 0.524499 5_4:+4123770 Msa0831110:CDS
TGGAAAGGCTCCTAAAGATA+AGG 0.526946 5_4:-4119740 Msa0831100:intron
TGAGAAACAGTATGGTGATA+GGG 0.526975 5_4:-4122812 Msa0831100:CDS
AGAGAAATGGCTCAACTTGG+AGG 0.527102 5_4:-4118657 Msa0831100:CDS
TTTGCCGGGTTATACAAGAA+TGG 0.532683 5_4:+4118182 None:intergenic
CCGGAAAAGAAAGGAATTCG+AGG 0.534313 5_4:-4123511 Msa0831100:CDS
GAACAAAGCACTTGAAGGTA+TGG 0.535144 5_4:-4118959 Msa0831100:CDS
CAAGCTTCCACGTCCAACTA+GGG 0.535750 5_4:-4123670 Msa0831100:CDS
TGACATTCCACCGAACTCTC+CGG 0.537024 5_4:+4123481 None:intergenic
CAGGCATGTCCAATGCTGGT+TGG 0.538335 5_4:+4119440 None:intergenic
GCGAAGTTTGAGATGAAGAA+TGG 0.539929 5_4:-4123039 Msa0831100:CDS
AAACAGTATGGTGATAGGGA+AGG 0.543304 5_4:-4122808 Msa0831100:CDS
GGATTGAGGATGCTATTGTT+GGG 0.544390 5_4:-4122786 Msa0831100:CDS
ATTCATATGGAGGAGATGCT+TGG 0.545848 5_4:-4123237 Msa0831100:CDS
GAGCAAGAGCGCTTTATGAA+AGG 0.547966 5_4:-4118992 Msa0831100:CDS
TGCACTTGATCATATTCCGA+AGG 0.550436 5_4:-4122872 Msa0831100:CDS
TTGCTTCTTCCATTTGTAAG+CGG 0.551687 5_4:+4118254 None:intergenic
TCGGGAATAAGGAAAGAACT+AGG 0.555595 5_4:-4122675 Msa0831100:CDS
CTTAAGCTACAGTATTTGCC+GGG 0.555956 5_4:+4118168 None:intergenic
TGGACATGCCTGAGTTGTTG+TGG 0.557171 5_4:-4119429 Msa0831100:CDS
TTTGGAAGAAGACATGGCTA+AGG 0.557300 5_4:+4123740 None:intergenic
TTGGATTAAGTATGCACAGT+GGG 0.558600 5_4:-4123454 Msa0831100:CDS
CACCTGAAAATTGCTATGCA+TGG 0.558764 5_4:-4119537 Msa0831100:CDS
AACGAGATTGAACGAGCGAG+AGG 0.562152 5_4:-4123117 Msa0831100:CDS
GTGCGGTTACTCTCTTGCCG+CGG 0.562369 5_4:-4123284 Msa0831100:CDS
GCAAATTCTTCGTGAAGCTA+GGG 0.562667 5_4:-4123607 Msa0831100:CDS
CAACTTGGAGGCTTCATCTG+GGG 0.564192 5_4:-4118645 Msa0831100:CDS
TTCTTAACCCTAGTTGGACG+TGG 0.565614 5_4:+4123663 None:intergenic
CGTTTGCGGAGTTTGAGGAA+AGG 0.569334 5_4:-4122933 Msa0831100:CDS
CTGTGATTTGAATTGGAGCG+GGG 0.569424 5_4:+4123634 None:intergenic
AGAACTCGATGCTGGAGACA+TGG 0.569993 5_4:-4122451 Msa0831100:CDS
ATACGTCAGCTGAATCTCAC+GGG 0.570788 5_4:-4119790 Msa0831100:CDS
ACATACTTCTCGCACGCTGA+AGG 0.571646 5_4:+4118859 None:intergenic
TATTCCGAAGGGGAGGGCTG+AGG 0.571654 5_4:-4122860 Msa0831100:CDS
TTCAGTATGAAGATGAAGTG+AGG 0.574668 5_4:-4122753 Msa0831100:CDS
GAGATGGATGAAATGGATGC+CGG 0.575668 5_4:-4123184 Msa0831100:CDS
ACGAGATTGAACGAGCGAGA+GGG 0.576648 5_4:-4123116 Msa0831100:CDS
GGATGCCGGATCAGCAAGGA+TGG 0.580624 5_4:-4123170 Msa0831100:CDS
GCACTTGATCATATTCCGAA+GGG 0.581118 5_4:-4122871 Msa0831100:CDS
AACTCGGCGAGTATCGTCTC+CGG 0.581315 5_4:-4123530 Msa0831100:CDS
CGTATCCAAGCACCAACCCT+AGG 0.581983 5_4:+4123066 None:intergenic
TGGACGTGGAAGCTTGACTT+CGG 0.584194 5_4:+4123677 None:intergenic
TGCATCTTTGGAAGAAGACA+TGG 0.584680 5_4:+4123734 None:intergenic
TGCTCTATCAAATTCACACT+CGG 0.591262 5_4:+4119010 None:intergenic
GGAGAAGCTAGCGGATGATG+AGG 0.592283 5_4:-4122977 Msa0831100:CDS
ATTAGGGAATGCTATTGGAA+AGG 0.592842 5_4:-4119755 Msa0831100:CDS
ATTAAGGAAATGTGTAAGGT+CGG 0.598325 5_4:-4117987 Msa0831100:three_prime_UTR
ATAAGATTGGAAGAGAGTGT+CGG 0.599092 5_4:-4122694 Msa0831100:CDS
TGCCGCGGGTGGATCAGTTG+TGG 0.601214 5_4:-4123269 Msa0831100:CDS
TGATCATATTCCGAAGGGGA+GGG 0.601416 5_4:-4122866 Msa0831100:CDS
AAAGATGCAGACCCAACCCT+AGG 0.601930 5_4:-4123720 Msa0831100:CDS
TGTACCTTCCACAACAACTC+AGG 0.605321 5_4:+4119421 None:intergenic
GGTTACTCTCTTGCCGCGGG+TGG 0.606774 5_4:-4123280 Msa0831100:CDS
ATTTAATCCGGAGAGTTCGG+TGG 0.620567 5_4:-4123488 Msa0831100:CDS
AGCTAATGTTCCTCCAGCTG+AGG 0.621589 5_4:-4122632 Msa0831100:CDS
GTATAAGTATATTCATATGG+AGG 0.621913 5_4:-4123247 Msa0831100:CDS
CACTTGATCATATTCCGAAG+GGG 0.622291 5_4:-4122870 Msa0831100:CDS
CTGGAGCTGATGATCTGAAG+TGG 0.624411 5_4:+4118708 None:intergenic
ATAAGTTTATTAATCATGCG+AGG 0.627758 5_4:-4123320 Msa0831100:CDS
CGGGAATAAGGAAAGAACTA+GGG 0.627920 5_4:-4122674 Msa0831100:CDS
AATACGTCAGCTGAATCTCA+CGG 0.630113 5_4:-4119791 Msa0831100:CDS
ATAGAGATAGAACTGCAGCT+TGG 0.631167 5_4:-4119607 Msa0831100:CDS
TATCGCTTCTCCTCAGCTGG+AGG 0.632169 5_4:+4122622 None:intergenic
TTGATCATATTCCGAAGGGG+AGG 0.638933 5_4:-4122867 Msa0831100:CDS
GGAGGGCTGAGGATTTGTAC+CGG 0.641247 5_4:-4122849 Msa0831100:CDS
GATTCCATTCTTGTATAACC+CGG 0.642262 5_4:-4118186 Msa0831100:three_prime_UTR
AACCACGAATCATAATTCAA+CGG 0.642901 5_4:+4122724 None:intergenic
GCAAATGAGAACTTCTGGTG+AGG 0.644406 5_4:+4119844 None:intergenic
GTTTGAGGAAAGGTGTAAGG+AGG 0.647717 5_4:-4122923 Msa0831100:CDS
ATGGCGAGGTTCCTAAGGCG+AGG 0.653917 5_4:-4123020 Msa0831100:CDS
TATATGAAAAGTATTTGGAG+TGG 0.655469 5_4:-4119561 Msa0831100:CDS
ATTATAAGAATCATACTCTG+TGG 0.659123 5_4:-4123371 Msa0831100:CDS
TGTGATTTGAATTGGAGCGG+GGG 0.661037 5_4:+4123635 None:intergenic
AAATGGATGCCGGATCAGCA+AGG 0.663884 5_4:-4123174 Msa0831100:CDS
GTTTGAGATGAAGAATGGCG+AGG 0.666538 5_4:-4123034 Msa0831100:CDS
ACAGTGGGAAGAGTCGCAGA+AGG 0.666855 5_4:-4123439 Msa0831100:CDS
CATGCCTGAGTTGTTGTGGA+AGG 0.673647 5_4:-4119425 Msa0831100:intron
GAATGTTTATGAGAGAGCGG+TGG 0.675482 5_4:-4122998 Msa0831100:CDS
GAGGAATGTTTGGGATCGTG+CGG 0.677707 5_4:-4123301 Msa0831100:CDS
TACCACAACTGATCCACCCG+CGG 0.678557 5_4:+4123267 None:intergenic
GATGCTTGGCAATGTCGCTG+GGG 0.678951 5_4:-4123223 Msa0831100:CDS
AAATTGTGAATTGAAAGTCA+TGG 0.679573 5_4:-4118031 Msa0831100:three_prime_UTR
GAGGAATGTTTATGAGAGAG+CGG 0.686113 5_4:-4123001 Msa0831100:CDS
GAGAGCGGTGGAGAAGCTAG+CGG 0.689654 5_4:-4122986 Msa0831100:CDS
GAATAAGGAAAGAACTAGGG+AGG 0.691859 5_4:-4122671 Msa0831100:CDS
TGGTTGAATGTGTTTCCTCG+GGG 0.698716 5_4:+4118295 None:intergenic
CGCTCCAATTCAAATCACAG+CGG 0.734163 5_4:-4123631 Msa0831100:CDS
TATCGACTATCTATTCCCCG+AGG 0.735748 5_4:-4118310 Msa0831100:CDS
TTTGGATTAAGTATGCACAG+TGG 0.776258 5_4:-4123455 Msa0831100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAGTTGAAATAAAAAT+AGG + chr5_4:4120535-4120554 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_4:4122442-4122461 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_4:4122442-4122461 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_4:4122442-4122461 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_4:4122442-4122461 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_4:4122442-4122461 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_4:4122442-4122461 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_4:4122442-4122461 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_4:4122442-4122461 None:intergenic 100.0%
!!! TATTGTAAGCATATTTTTTA+CGG - chr5_4:4119350-4119369 Msa0831100:intron 15.0%
!! TACATATTAATAATGACTAT+AGG - chr5_4:4119636-4119655 Msa0831100:intron 15.0%
!!! TTTTCTTGTATTGATAAATT+GGG - chr5_4:4120689-4120708 Msa0831100:intron 15.0%
!!! TCATTTTGAAACAAATTTTT+TGG + chr5_4:4121010-4121029 None:intergenic 15.0%
!!! GATTTTTTATTTTGAAAACT+TGG + chr5_4:4121357-4121376 None:intergenic 15.0%
!!! AAAACTATATGAAAAGTATT+TGG - chr5_4:4122103-4122122 Msa0831100:intron 15.0%
!!! TTATTAACAATTTTACAGTT+AGG + chr5_4:4122614-4122633 None:intergenic 15.0%
!! TTTATTAACAAATTTAACAC+AGG + chr5_4:4123267-4123286 None:intergenic 15.0%
!! AGAGATTTAAATAAAATGCT+TGG + chr5_4:4119288-4119307 None:intergenic 20.0%
!!! TATTTAAATCTCTGTTTTGT+TGG - chr5_4:4119295-4119314 Msa0831100:intron 20.0%
!! AAAAAATATGCTTACAATAC+AGG + chr5_4:4119349-4119368 None:intergenic 20.0%
!!! ATTGTAAGCATATTTTTTAC+GGG - chr5_4:4119351-4119370 Msa0831100:intron 20.0%
!!! TAATTAAACCATTCTAAAAG+AGG + chr5_4:4119596-4119615 None:intergenic 20.0%
!! CCTAAATTTGATTGATTAAA+GGG + chr5_4:4120030-4120049 None:intergenic 20.0%
!! TCCTAAATTTGATTGATTAA+AGG + chr5_4:4120031-4120050 None:intergenic 20.0%
!! GCATGAATTATTAATTCAAT+CGG + chr5_4:4120177-4120196 None:intergenic 20.0%
!! TTGAATTAATAATTCATGCT+CGG - chr5_4:4120178-4120197 Msa0831100:intron 20.0%
!! TTATAGTGTAGATAAAATAG+TGG - chr5_4:4120271-4120290 Msa0831100:intron 20.0%
!!! AAAGTCAAGGTTTTAAATTT+TGG + chr5_4:4120447-4120466 None:intergenic 20.0%
!! ATAATTCAAACATAAAGTCA+AGG + chr5_4:4120460-4120479 None:intergenic 20.0%
!! GTTGAAATAAAAATAGGAAT+CGG + chr5_4:4120529-4120548 None:intergenic 20.0%
!!! GTTTTCTTGTATTGATAAAT+TGG - chr5_4:4120688-4120707 Msa0831100:intron 20.0%
!!! TATTTTCCTAGATAATGAAA+TGG - chr5_4:4120812-4120831 Msa0831100:intron 20.0%
!! AAATTTATTACTAACATGTG+TGG + chr5_4:4120934-4120953 None:intergenic 20.0%
!! GTAAGAAATTAAAGTTGTAT+TGG + chr5_4:4121049-4121068 None:intergenic 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG - chr5_4:4121137-4121156 Msa0831100:intron 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG - chr5_4:4121138-4121157 Msa0831100:intron 20.0%
!! AAATTAATTACTAACATGAG+TGG + chr5_4:4121278-4121297 None:intergenic 20.0%
!! ACTGTAAAATTGTTAATAAC+AGG - chr5_4:4122615-4122634 Msa0831100:CDS 20.0%
! ATTATAAGAATCATACTCTG+TGG - chr5_4:4118298-4118317 Msa0831100:CDS 25.0%
! ATAAGTTTATTAATCATGCG+AGG - chr5_4:4118349-4118368 Msa0831100:intron 25.0%
! GTGGTATAAGTATATTCATA+TGG - chr5_4:4118419-4118438 Msa0831100:intron 25.0%
! GTATAAGTATATTCATATGG+AGG - chr5_4:4118422-4118441 Msa0831100:intron 25.0%
! GTGGTTTGATTATATAAGAT+TGG - chr5_4:4118962-4118981 Msa0831100:CDS 25.0%
!!! ATTGATTTTGCATTTTCTTG+TGG - chr5_4:4119145-4119164 Msa0831100:intron 25.0%
! TATTTGTCTGTGTATAACAT+AGG - chr5_4:4119175-4119194 Msa0831100:intron 25.0%
!!! TTGTAAGCATATTTTTTACG+GGG - chr5_4:4119352-4119371 Msa0831100:intron 25.0%
!!! TAAAATAGCCTCTTTTAGAA+TGG - chr5_4:4119585-4119604 Msa0831100:CDS 25.0%
!! ATCAAAAGCACAACAAAAAT+AGG + chr5_4:4119984-4120003 None:intergenic 25.0%
!!! TTTTGTTGTGCTTTTGATAT+TGG - chr5_4:4119986-4120005 Msa0831100:intron 25.0%
! CCCTTTAATCAATCAAATTT+AGG - chr5_4:4120027-4120046 Msa0831100:intron 25.0%
!! AAATTTAGGAGTGTGTATAT+AGG - chr5_4:4120041-4120060 Msa0831100:intron 25.0%
! ATTATAGAAAAAACCAACAC+CGG + chr5_4:4120128-4120147 None:intergenic 25.0%
!!! GTTTTTTCTATAATTGCTTC+TGG - chr5_4:4120134-4120153 Msa0831100:intron 25.0%
!!! AAATAGTGGTTTTTTATGTG+AGG - chr5_4:4120285-4120304 Msa0831100:intron 25.0%
!! TCGTCTTAATATTTTACTAG+AGG + chr5_4:4120488-4120507 None:intergenic 25.0%
!!! AATCATAGGGTCTATTTTTA+TGG + chr5_4:4120625-4120644 None:intergenic 25.0%
!!! TTTTTGGGAAAACAATCATA+GGG + chr5_4:4120638-4120657 None:intergenic 25.0%
!!! TTTTTTGGGAAAACAATCAT+AGG + chr5_4:4120639-4120658 None:intergenic 25.0%
!!! TTGAAACTTTATGGTTTTGA+TGG - chr5_4:4120747-4120766 Msa0831100:intron 25.0%
!! TTTTTCTTATAAAGTAAGGG+CGG - chr5_4:4121141-4121160 Msa0831100:intron 25.0%
! TTGGTAAACAGATTAAGAAA+TGG + chr5_4:4121203-4121222 None:intergenic 25.0%
!!! TGTTTTTTTTTTACCTTTCC+TGG - chr5_4:4121547-4121566 Msa0831100:intron 25.0%
! CGAGTTAATTTAGTAAAAGA+TGG + chr5_4:4121718-4121737 None:intergenic 25.0%
! ACACTACTTTCATTTCTTTA+GGG - chr5_4:4121785-4121804 Msa0831100:intron 25.0%
! TAGTATGTTACCTTATCTTT+AGG + chr5_4:4121942-4121961 None:intergenic 25.0%
! TATCTGTTGACAAAGATAAA+AGG + chr5_4:4122030-4122049 None:intergenic 25.0%
!!! TATATGAAAAGTATTTGGAG+TGG - chr5_4:4122108-4122127 Msa0831100:intron 25.0%
!! TGAGATATTGACATCTATTT+TGG + chr5_4:4122326-4122345 None:intergenic 25.0%
!! AGATGAGAGTTTAGAATTAT+CGG - chr5_4:4122765-4122784 Msa0831100:CDS 25.0%
! TCCAGATTTAAAAGAAGAAA+GGG - chr5_4:4122979-4122998 Msa0831100:CDS 25.0%
!! GACTTTCAATTCACAATTTT+AGG + chr5_4:4123637-4123656 None:intergenic 25.0%
! AAATTGTGAATTGAAAGTCA+TGG - chr5_4:4123638-4123657 Msa0831100:CDS 25.0%
!!! TACACTCAATAATTGACTTT+TGG + chr5_4:4123710-4123729 None:intergenic 25.0%
!!! ATTTGTTTTGTGTCATCCTA+GGG - chr5_4:4118587-4118606 Msa0831100:CDS 30.0%
AACCACGAATCATAATTCAA+CGG + chr5_4:4118948-4118967 None:intergenic 30.0%
! ATTAGACTAGCAAGATTTTC+AGG + chr5_4:4119385-4119404 None:intergenic 30.0%
! TTTTTATACCAATGAGGTTG+TGG - chr5_4:4119436-4119455 Msa0831100:CDS 30.0%
! TTTTATACCAATGAGGTTGT+GGG - chr5_4:4119437-4119456 Msa0831100:CDS 30.0%
!! AAGAGCTTTATGATCTTTTC+TGG - chr5_4:4119541-4119560 Msa0831100:CDS 30.0%
!! AGAGCTTTATGATCTTTTCT+GGG - chr5_4:4119542-4119561 Msa0831100:CDS 30.0%
TAATAATGACTATAGGTACC+TGG - chr5_4:4119643-4119662 Msa0831100:intron 30.0%
ACTTGATTGTTAGCAATTCT+TGG - chr5_4:4119700-4119719 Msa0831100:intron 30.0%
TGAAAGATGTCAAATAGAGT+AGG - chr5_4:4120099-4120118 Msa0831100:intron 30.0%
GTAAAAACCACTATATACAC+TGG + chr5_4:4120325-4120344 None:intergenic 30.0%
!!! ACACAGTATCTGCTTTTTAT+TGG - chr5_4:4120356-4120375 Msa0831100:intron 30.0%
ACTAACTAACTACTACTTGA+GGG + chr5_4:4120393-4120412 None:intergenic 30.0%
AACTAACTAACTACTACTTG+AGG + chr5_4:4120394-4120413 None:intergenic 30.0%
CAAGTAGTAGTTAGTTAGTT+AGG - chr5_4:4120394-4120413 Msa0831100:intron 30.0%
AGTAGTTAGTTAGTTAGGTA+AGG - chr5_4:4120399-4120418 Msa0831100:intron 30.0%
GAATCGGAGAATGAATAATA+GGG + chr5_4:4120513-4120532 None:intergenic 30.0%
TGGTAAGATACATTTCTTGT+GGG - chr5_4:4120575-4120594 Msa0831100:intron 30.0%
! GTTTTCCCAAAAAACATAAG+TGG - chr5_4:4120645-4120664 Msa0831100:intron 30.0%
ACAAGAAAACCAATGTACTA+TGG + chr5_4:4120678-4120697 None:intergenic 30.0%
! TTGTATTGATAAATTGGGCT+TGG - chr5_4:4120694-4120713 Msa0831100:intron 30.0%
!! GGGATTGATTTGAAACTTTA+TGG - chr5_4:4120738-4120757 Msa0831100:intron 30.0%
!!! TACTGGTTTTGAGAATAAGA+AGG - chr5_4:4120770-4120789 Msa0831100:intron 30.0%
!! AAGTGACACTCATTTTGAAA+CGG + chr5_4:4120984-4121003 None:intergenic 30.0%
GTATTTATTGAGGGTAAAGT+TGG + chr5_4:4121074-4121093 None:intergenic 30.0%
!! AAGTTGGGAGTATTTATTGA+GGG + chr5_4:4121083-4121102 None:intergenic 30.0%
CAGTTTGATAGATAGAATAG+TGG - chr5_4:4121383-4121402 Msa0831100:intron 30.0%
GGATAGTGCATATTAAGATT+AGG - chr5_4:4121404-4121423 Msa0831100:intron 30.0%
TAGTGCATATTAAGATTAGG+AGG - chr5_4:4121407-4121426 Msa0831100:intron 30.0%
TATTAAGATTAGGAGGAGAT+TGG - chr5_4:4121414-4121433 Msa0831100:intron 30.0%
AGGTTAAACTAGAAAGTCAA+TGG + chr5_4:4121675-4121694 None:intergenic 30.0%
!!! CTTTCTAGTTTAACCTTTTC+TGG - chr5_4:4121679-4121698 Msa0831100:intron 30.0%
AAGTAGTGTCAATACTTAGT+AGG + chr5_4:4121774-4121793 None:intergenic 30.0%
GACACTACTTTCATTTCTTT+AGG - chr5_4:4121784-4121803 Msa0831100:intron 30.0%
AGTTCTCATTTGCAAAGATA+TGG - chr5_4:4121835-4121854 Msa0831100:intron 30.0%
CAAATATTAGGGAATGCTAT+TGG - chr5_4:4121909-4121928 Msa0831100:intron 30.0%
ACTATATTAGAAGCTTCCAT+AGG + chr5_4:4122498-4122517 None:intergenic 30.0%
GAGAAAGAGAAATCACATTA+AGG + chr5_4:4122530-4122549 None:intergenic 30.0%
ATTATCGGAACAAGAACAAA+AGG - chr5_4:4122780-4122799 Msa0831100:CDS 30.0%
CTCCAGATTTAAAAGAAGAA+AGG - chr5_4:4122978-4122997 Msa0831100:CDS 30.0%
!! TTTCCAAGGGTTAGTTTATA+TGG - chr5_4:4123169-4123188 Msa0831100:CDS 30.0%
CAAATTGAGAAGAATGAAGT+AGG + chr5_4:4123318-4123337 None:intergenic 30.0%
!! CTCAATTTGATTTTGCAGAA+TGG - chr5_4:4123329-4123348 Msa0831100:CDS 30.0%
!! AATAAGAGTATCTTGTAGCT+TGG - chr5_4:4123457-4123476 Msa0831100:CDS 30.0%
! TTAAGCAGCTAAGTCAATTT+TGG - chr5_4:4123524-4123543 Msa0831100:CDS 30.0%
! TAAGCAGCTAAGTCAATTTT+GGG - chr5_4:4123525-4123544 Msa0831100:CDS 30.0%
! ACTTGTGATTTTCGTCATTA+AGG - chr5_4:4123666-4123685 Msa0831100:CDS 30.0%
ATTAAGGAAATGTGTAAGGT+CGG - chr5_4:4123682-4123701 Msa0831100:CDS 30.0%
!!! TAAACACCTGATTTTTTTGC+TGG - chr5_4:4123775-4123794 Msa0831100:five_prime_UTR 30.0%
AATCAACCAGCAAAAAAATC+AGG + chr5_4:4123784-4123803 Msa0831110:CDS 30.0%
TTCCTCTTTCTCTATCGTTA+GGG - chr5_4:4117897-4117916 Msa0831100:three_prime_UTR 35.0%
!!! TTTTCGAGTGAGATAACCTA+GGG + chr5_4:4117968-4117987 None:intergenic 35.0%
!! GTTTTGTTCTTAACCCTAGT+TGG + chr5_4:4118015-4118034 None:intergenic 35.0%
! GAATCGGTGATTTTCTGTTT+CGG + chr5_4:4118114-4118133 None:intergenic 35.0%
AGGAATTCGAGGATTTAATC+CGG - chr5_4:4118169-4118188 Msa0831100:three_prime_UTR 35.0%
TTTGGATTAAGTATGCACAG+TGG - chr5_4:4118214-4118233 Msa0831100:exon 35.0%
TTGGATTAAGTATGCACAGT+GGG - chr5_4:4118215-4118234 Msa0831100:exon 35.0%
TTAATCATGCGAGGAATGTT+TGG - chr5_4:4118358-4118377 Msa0831100:intron 35.0%
TAATCATGCGAGGAATGTTT+GGG - chr5_4:4118359-4118378 Msa0831100:intron 35.0%
!! TTTTCGAGAGATGGATGAAA+TGG - chr5_4:4118478-4118497 Msa0831100:intron 35.0%
!!! GATTTGTTTTGTGTCATCCT+AGG - chr5_4:4118586-4118605 Msa0831100:CDS 35.0%
TTGAGAAACAGTATGGTGAT+AGG - chr5_4:4118856-4118875 Msa0831100:intron 35.0%
TGAGAAACAGTATGGTGATA+GGG - chr5_4:4118857-4118876 Msa0831100:intron 35.0%
TTCAGTATGAAGATGAAGTG+AGG - chr5_4:4118916-4118935 Msa0831100:CDS 35.0%
ATCCGTTGAATTATGATTCG+TGG - chr5_4:4118943-4118962 Msa0831100:CDS 35.0%
! ATAAGATTGGAAGAGAGTGT+CGG - chr5_4:4118975-4118994 Msa0831100:CDS 35.0%
AATGCTTGGAAGTTCACAAA+AGG + chr5_4:4119274-4119293 None:intergenic 35.0%
CTTACAATACAGGAAAAGCA+TGG + chr5_4:4119339-4119358 None:intergenic 35.0%
! GCAAGCTTTTTATACCAATG+AGG - chr5_4:4119430-4119449 Msa0831100:CDS 35.0%
!!! TGTGGGTTTTGATTCATTCA+CGG - chr5_4:4119454-4119473 Msa0831100:CDS 35.0%
TTGATTCATTCACGGTTCTT+AGG - chr5_4:4119462-4119481 Msa0831100:CDS 35.0%
CATATTCTCTAACATCAACC+AGG + chr5_4:4119664-4119683 None:intergenic 35.0%
CAAAAATAGGTCCACAAGTA+CGG + chr5_4:4119971-4119990 None:intergenic 35.0%
! AGGAGTGTGTATATAGGTTT+AGG - chr5_4:4120047-4120066 Msa0831100:intron 35.0%
TGTATATAGGTTTAGGAGTG+TGG - chr5_4:4120054-4120073 Msa0831100:intron 35.0%
CAGAAGAAAAAGATGTGTAG+TGG - chr5_4:4120243-4120262 Msa0831100:intron 35.0%
CAGTAAACCAGTGTATATAG+TGG - chr5_4:4120315-4120334 Msa0831100:intron 35.0%
GGAATCGGAGAATGAATAAT+AGG + chr5_4:4120514-4120533 None:intergenic 35.0%
GTGGTAAGATACATTTCTTG+TGG - chr5_4:4120574-4120593 Msa0831100:intron 35.0%
TTCCCAAAAAACATAAGTGG+TGG - chr5_4:4120648-4120667 Msa0831100:intron 35.0%
TCCCAAAAAACATAAGTGGT+GGG - chr5_4:4120649-4120668 Msa0831100:intron 35.0%
!!! TCCCACCACTTATGTTTTTT+GGG + chr5_4:4120653-4120672 None:intergenic 35.0%
!!! ATCCCACCACTTATGTTTTT+TGG + chr5_4:4120654-4120673 None:intergenic 35.0%
!!! CTTTATGGTTTTGATGGTAC+TGG - chr5_4:4120753-4120772 Msa0831100:intron 35.0%
CCTTCACCATTTCATTATCT+AGG + chr5_4:4120821-4120840 None:intergenic 35.0%
CCTAGATAATGAAATGGTGA+AGG - chr5_4:4120818-4120837 Msa0831100:intron 35.0%
!! GAAGTTGGGAGTATTTATTG+AGG + chr5_4:4121084-4121103 None:intergenic 35.0%
AATTGTGTGAGAGAGAAGTT+GGG + chr5_4:4121098-4121117 None:intergenic 35.0%
AAATTGTGTGAGAGAGAAGT+TGG + chr5_4:4121099-4121118 None:intergenic 35.0%
!!! ATGAGTGTCGTTTAAGGTTT+TGG + chr5_4:4121222-4121241 None:intergenic 35.0%
!! TTCACAATGAGTGTCGTTTA+AGG + chr5_4:4121228-4121247 None:intergenic 35.0%
AAACGACACTCATTGTGAAA+CGG - chr5_4:4121229-4121248 Msa0831100:intron 35.0%
TTTGTTGACCATCTATCAAC+AGG - chr5_4:4121325-4121344 Msa0831100:intron 35.0%
GTCAATCTCTGAATCAAATG+TGG + chr5_4:4121523-4121542 None:intergenic 35.0%
TATATCTTGAATACCCGTGA+TGG + chr5_4:4121586-4121605 None:intergenic 35.0%
TCTTTGCAAATGAGAACTTC+TGG + chr5_4:4121833-4121852 None:intergenic 35.0%
ATTAGGGAATGCTATTGGAA+AGG - chr5_4:4121914-4121933 Msa0831100:intron 35.0%
AGGCATATGTGAAGTTAACT+AGG + chr5_4:4122010-4122029 None:intergenic 35.0%
! TTTGGTGATAGCCTGATATT+TGG + chr5_4:4122308-4122327 None:intergenic 35.0%
!! ATTGGTAATAAGTGCTGAGT+TGG + chr5_4:4122417-4122436 None:intergenic 35.0%
ATAGGATAGAAATGCTATGG+GGG + chr5_4:4122480-4122499 None:intergenic 35.0%
CATAGGATAGAAATGCTATG+GGG + chr5_4:4122481-4122500 None:intergenic 35.0%
CCATAGGATAGAAATGCTAT+GGG + chr5_4:4122482-4122501 None:intergenic 35.0%
TCCATAGGATAGAAATGCTA+TGG + chr5_4:4122483-4122502 None:intergenic 35.0%
AGAGAAATCACATTAAGGCA+CGG + chr5_4:4122525-4122544 None:intergenic 35.0%
GCATAGATGGTTCATAGATA+TGG + chr5_4:4122578-4122597 None:intergenic 35.0%
TGCTCTATCAAATTCACACT+CGG + chr5_4:4122662-4122681 None:intergenic 35.0%
!!! TTTGTTTTGTGCCTGTTTAG+AGG - chr5_4:4122919-4122938 Msa0831100:CDS 35.0%
! GCCCTTTCTTCTTTTAAATC+TGG + chr5_4:4122983-4123002 None:intergenic 35.0%
ATTAGAGAAATGGCTCAACT+TGG - chr5_4:4123009-4123028 Msa0831100:CDS 35.0%
AGACAAGTTTCTACTGAAGA+TGG - chr5_4:4123103-4123122 Msa0831100:CDS 35.0%
ACTCATTGTTTGTCTTTGAG+TGG - chr5_4:4123146-4123165 Msa0831100:CDS 35.0%
CAGTGACAAAATTGCAAACA+AGG + chr5_4:4123195-4123214 None:intergenic 35.0%
!! ATTTTGTCACTGCTAGTTTC+TGG - chr5_4:4123203-4123222 Msa0831100:CDS 35.0%
! TTTCTGGTATCGTTAGCATT+AGG - chr5_4:4123219-4123238 Msa0831100:CDS 35.0%
ATTGGTTGAATGTGTTTCCT+CGG + chr5_4:4123379-4123398 None:intergenic 35.0%
TTCAACCAATCTCAAGATCA+TGG - chr5_4:4123389-4123408 Msa0831100:CDS 35.0%
TTGCTTCTTCCATTTGTAAG+CGG + chr5_4:4123418-4123437 None:intergenic 35.0%
GATTCCATTCTTGTATAACC+CGG - chr5_4:4123483-4123502 Msa0831100:CDS 35.0%
ACTTAAGCTACAGTATTTGC+CGG + chr5_4:4123505-4123524 None:intergenic 35.0%
CGTCATTAAGGAAATGTGTA+AGG - chr5_4:4123678-4123697 Msa0831100:CDS 35.0%
AAAGAGGAAGAAGACGATAC+AGG + chr5_4:4117886-4117905 None:intergenic 40.0%
CTTCCTCTTTCTCTATCGTT+AGG - chr5_4:4117896-4117915 Msa0831100:three_prime_UTR 40.0%
AACCCTAACGATAGAGAAAG+AGG + chr5_4:4117902-4117921 None:intergenic 40.0%
AAGAAGACATGGCTAAGGTT+TGG + chr5_4:4117927-4117946 None:intergenic 40.0%
TTTGGAAGAAGACATGGCTA+AGG + chr5_4:4117932-4117951 None:intergenic 40.0%
! TGCATCTTTGGAAGAAGACA+TGG + chr5_4:4117938-4117957 None:intergenic 40.0%
!!! CTTTTCGAGTGAGATAACCT+AGG + chr5_4:4117969-4117988 None:intergenic 40.0%
AGCAAATTCTTCGTGAAGCT+AGG - chr5_4:4118061-4118080 Msa0831100:three_prime_UTR 40.0%
GCAAATTCTTCGTGAAGCTA+GGG - chr5_4:4118062-4118081 Msa0831100:three_prime_UTR 40.0%
! TGATTTTCTGTTTCGGAGGA+CGG + chr5_4:4118107-4118126 None:intergenic 40.0%
! CCTCGAATTCCTTTCTTTTC+CGG + chr5_4:4118161-4118180 None:intergenic 40.0%
AGGATTTAATCCGGAGAGTT+CGG - chr5_4:4118178-4118197 Msa0831100:three_prime_UTR 40.0%
ATTCATATGGAGGAGATGCT+TGG - chr5_4:4118432-4118451 Msa0831100:intron 40.0%
! GCGAAGTTTGAGATGAAGAA+TGG - chr5_4:4118630-4118649 Msa0831100:CDS 40.0%
TCATAAACATTCCTCGCCTT+AGG + chr5_4:4118663-4118682 None:intergenic 40.0%
GAGGAATGTTTATGAGAGAG+CGG - chr5_4:4118668-4118687 Msa0831100:CDS 40.0%
TGCACTTGATCATATTCCGA+AGG - chr5_4:4118797-4118816 Msa0831100:intron 40.0%
GCACTTGATCATATTCCGAA+GGG - chr5_4:4118798-4118817 Msa0831100:intron 40.0%
CACTTGATCATATTCCGAAG+GGG - chr5_4:4118799-4118818 Msa0831100:intron 40.0%
TCTCAAATGCCACAAACTTC+CGG + chr5_4:4118842-4118861 None:intergenic 40.0%
GTGGCATTTGAGAAACAGTA+TGG - chr5_4:4118849-4118868 Msa0831100:intron 40.0%
AAACAGTATGGTGATAGGGA+AGG - chr5_4:4118861-4118880 Msa0831100:intron 40.0%
AACAGTATGGTGATAGGGAA+GGG - chr5_4:4118862-4118881 Msa0831100:intron 40.0%
GGATTGAGGATGCTATTGTT+GGG - chr5_4:4118883-4118902 Msa0831100:CDS 40.0%
ATGCTATTGTTGGGAAGAGA+AGG - chr5_4:4118892-4118911 Msa0831100:CDS 40.0%
!! TAAGATTGGAAGAGAGTGTC+GGG - chr5_4:4118976-4118995 Msa0831100:CDS 40.0%
TCGGGAATAAGGAAAGAACT+AGG - chr5_4:4118994-4119013 Msa0831100:CDS 40.0%
CGGGAATAAGGAAAGAACTA+GGG - chr5_4:4118995-4119014 Msa0831100:CDS 40.0%
GAATAAGGAAAGAACTAGGG+AGG - chr5_4:4118998-4119017 Msa0831100:CDS 40.0%
GGCAGCGCTATATTTATTTG+TGG - chr5_4:4119072-4119091 Msa0831100:intron 40.0%
ATCAAAACCCACAACCTCAT+TGG + chr5_4:4119447-4119466 None:intergenic 40.0%
!!! GGATACTGTTTTTAGAGCAG+TGG - chr5_4:4119488-4119507 Msa0831100:CDS 40.0%
TCTTGCATCAAACAAAGAGG+AGG + chr5_4:4119525-4119544 None:intergenic 40.0%
AGCTCTTGCATCAAACAAAG+AGG + chr5_4:4119528-4119547 None:intergenic 40.0%
CATCACTAGCACTTCAACTT+TGG + chr5_4:4119795-4119814 None:intergenic 40.0%
AGTGCTAGTGATGTACCTTA+AGG - chr5_4:4119802-4119821 Msa0831100:CDS 40.0%
TGTAAGAACGCTAGACCTTA+AGG + chr5_4:4119820-4119839 None:intergenic 40.0%
CTCTCAGTTTGTGATTCAGT+TGG - chr5_4:4119900-4119919 Msa0831100:intron 40.0%
!! TTTGAGTTTTGCCGTACTTG+TGG - chr5_4:4119957-4119976 Msa0831100:intron 40.0%
TGTCAAATAGAGTAGGAGAC+CGG - chr5_4:4120106-4120125 Msa0831100:intron 40.0%
GTTAAGATAGATGCTCAACG+TGG - chr5_4:4120555-4120574 Msa0831100:intron 40.0%
!! AAATTGGGCTTGGTTTGCAT+TGG - chr5_4:4120704-4120723 Msa0831100:intron 40.0%
CATTCTGAGTGCTTGATATG+TGG - chr5_4:4120867-4120886 Msa0831100:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr5_4:4120980-4120999 None:intergenic 40.0%
!!! TGACACTCATTTTGAAACGG+AGG + chr5_4:4120981-4121000 None:intergenic 40.0%
AACGACACTCATTGTGAAAC+GGG - chr5_4:4121230-4121249 Msa0831100:intron 40.0%
! GGTATCAACCTGTTGATAGA+TGG + chr5_4:4121336-4121355 None:intergenic 40.0%
!!! GATTGGAGAGGTTTTAGACT+TGG - chr5_4:4121431-4121450 Msa0831100:intron 40.0%
!!! AGAGGTTTTAGACTTGGACT+AGG - chr5_4:4121437-4121456 Msa0831100:intron 40.0%
CAAGAGCAAAGAAGTTGTAC+AGG + chr5_4:4121491-4121510 None:intergenic 40.0%
CAATAGAACTCAACCAGGAA+AGG + chr5_4:4121563-4121582 None:intergenic 40.0%
GTTGAGTTCTATTGCCATCA+CGG - chr5_4:4121569-4121588 Msa0831100:intron 40.0%
TTGAGTTCTATTGCCATCAC+GGG - chr5_4:4121570-4121589 Msa0831100:intron 40.0%
GTAAAAGATGGCAATAGAGC+TGG + chr5_4:4121706-4121725 None:intergenic 40.0%
CAGCTGACGTATTTCAAACT+GGG + chr5_4:4121871-4121890 None:intergenic 40.0%
TCAGCTGACGTATTTCAAAC+TGG + chr5_4:4121872-4121891 None:intergenic 40.0%
AATACGTCAGCTGAATCTCA+CGG - chr5_4:4121878-4121897 Msa0831100:intron 40.0%
TGGAAAGGCTCCTAAAGATA+AGG - chr5_4:4121929-4121948 Msa0831100:intron 40.0%
ATAGAGATAGAACTGCAGCT+TGG - chr5_4:4122062-4122081 Msa0831100:intron 40.0%
CACCTGAAAATTGCTATGCA+TGG - chr5_4:4122132-4122151 Msa0831100:intron 40.0%
! CTCCATGCATAGCAATTTTC+AGG + chr5_4:4122137-4122156 None:intergenic 40.0%
CTGTACAAGAGCCAAATATC+AGG - chr5_4:4122294-4122313 Msa0831100:intron 40.0%
GAAGGATAGGAAACTAGTAG+AGG + chr5_4:4122356-4122375 None:intergenic 40.0%
TAGGATAGAAATGCTATGGG+GGG + chr5_4:4122479-4122498 None:intergenic 40.0%
CCCATAGCATTTCTATCCTA+TGG - chr5_4:4122479-4122498 Msa0831100:intron 40.0%
GCATCAGAAGATGACAACAA+AGG + chr5_4:4122552-4122571 None:intergenic 40.0%
TATGAACCATCTATGCATGC+TGG - chr5_4:4122582-4122601 Msa0831100:intron 40.0%
TTATGACCAGCATGCATAGA+TGG + chr5_4:4122591-4122610 None:intergenic 40.0%
! TGATCGAACAAAGCACTTGA+AGG - chr5_4:4122705-4122724 Msa0831100:CDS 40.0%
! GAACAAAGCACTTGAAGGTA+TGG - chr5_4:4122710-4122729 Msa0831100:CDS 40.0%
ATCCTCAAACACCTCTAAAC+AGG + chr5_4:4122933-4122952 None:intergenic 40.0%
GGGCAATGCTATTAGAGAAA+TGG - chr5_4:4122999-4123018 Msa0831100:CDS 40.0%
CTTCTCTTCTTGAGCTTCTT+GGG + chr5_4:4123085-4123104 None:intergenic 40.0%
TCTTCTCTTCTTGAGCTTCT+TGG + chr5_4:4123086-4123105 None:intergenic 40.0%
CTACTGAAGATGGTTCTTCT+AGG - chr5_4:4123113-4123132 Msa0831100:CDS 40.0%
TTGTCTTTGAGTGGTTTCCA+AGG - chr5_4:4123155-4123174 Msa0831100:CDS 40.0%
TGTCTTTGAGTGGTTTCCAA+GGG - chr5_4:4123156-4123175 Msa0831100:CDS 40.0%
AGGCCATATAAACTAACCCT+TGG + chr5_4:4123175-4123194 None:intergenic 40.0%
TTGGTTGAATGTGTTTCCTC+GGG + chr5_4:4123378-4123397 None:intergenic 40.0%
TTTGCCGGGTTATACAAGAA+TGG + chr5_4:4123490-4123509 None:intergenic 40.0%
CTTAAGCTACAGTATTTGCC+GGG + chr5_4:4123504-4123523 None:intergenic 40.0%
!! TTGCTGGTTGATTTTGCTGA+AGG - chr5_4:4123791-4123810 Msa0831100:five_prime_UTR 40.0%
GAGTGAGATAACCTAGGGTT+GGG + chr5_4:4117963-4117982 None:intergenic 45.0%
TTCTTAACCCTAGTTGGACG+TGG + chr5_4:4118009-4118028 None:intergenic 45.0%
TGTGATTTGAATTGGAGCGG+GGG + chr5_4:4118037-4118056 None:intergenic 45.0%
CTGTGATTTGAATTGGAGCG+GGG + chr5_4:4118038-4118057 None:intergenic 45.0%
GCTGTGATTTGAATTGGAGC+GGG + chr5_4:4118039-4118058 None:intergenic 45.0%
CGCTGTGATTTGAATTGGAG+CGG + chr5_4:4118040-4118059 None:intergenic 45.0%
CGCTCCAATTCAAATCACAG+CGG - chr5_4:4118038-4118057 Msa0831100:three_prime_UTR 45.0%
TGCTCCGCTGTGATTTGAAT+TGG + chr5_4:4118045-4118064 None:intergenic 45.0%
! TCGGTGATTTTCTGTTTCGG+AGG + chr5_4:4118111-4118130 None:intergenic 45.0%
!! ATCACCGATTCAACCGAACT+CGG - chr5_4:4118123-4118142 Msa0831100:three_prime_UTR 45.0%
GTATCGTCTCCGGAAAAGAA+AGG - chr5_4:4118149-4118168 Msa0831100:three_prime_UTR 45.0%
CCGGAAAAGAAAGGAATTCG+AGG - chr5_4:4118158-4118177 Msa0831100:three_prime_UTR 45.0%
ATTTAATCCGGAGAGTTCGG+TGG - chr5_4:4118181-4118200 Msa0831100:three_prime_UTR 45.0%
TTCGGTGGAATGTCAGTGTT+TGG - chr5_4:4118196-4118215 Msa0831100:three_prime_UTR 45.0%
GAGATGGATGAAATGGATGC+CGG - chr5_4:4118485-4118504 Msa0831100:intron 45.0%
GATAACCATCCTTGCTGATC+CGG + chr5_4:4118507-4118526 None:intergenic 45.0%
! GTTTTGTGTCATCCTAGGGT+TGG - chr5_4:4118591-4118610 Msa0831100:CDS 45.0%
! GTTTGAGATGAAGAATGGCG+AGG - chr5_4:4118635-4118654 Msa0831100:CDS 45.0%
GAATGTTTATGAGAGAGCGG+TGG - chr5_4:4118671-4118690 Msa0831100:CDS 45.0%
! GGAGTTTGAGGAAAGGTGTA+AGG - chr5_4:4118743-4118762 Msa0831100:intron 45.0%
! GTTTGAGGAAAGGTGTAAGG+AGG - chr5_4:4118746-4118765 Msa0831100:intron 45.0%
TTGATCATATTCCGAAGGGG+AGG - chr5_4:4118802-4118821 Msa0831100:intron 45.0%
TGATCATATTCCGAAGGGGA+GGG - chr5_4:4118803-4118822 Msa0831100:intron 45.0%
GGATTTGTACCGGAAGTTTG+TGG - chr5_4:4118830-4118849 Msa0831100:intron 45.0%
GGGATTGAGGATGCTATTGT+TGG - chr5_4:4118882-4118901 Msa0831100:CDS 45.0%
CTCTATGAAGAACTCGATGC+TGG - chr5_4:4119210-4119229 Msa0831100:intron 45.0%
TTCATTCACGGTTCTTAGGC+TGG - chr5_4:4119466-4119485 Msa0831100:CDS 45.0%
TCATTCACGGTTCTTAGGCT+GGG - chr5_4:4119467-4119486 Msa0831100:CDS 45.0%
! AGGTTTAGGAGTGTGGATAC+TGG - chr5_4:4120061-4120080 Msa0831100:intron 45.0%
! TGGATACTGGAGTGTTCATG+TGG - chr5_4:4120074-4120093 Msa0831100:intron 45.0%
GTAAGGCTCTCAACTTAGAG+TGG - chr5_4:4120416-4120435 Msa0831100:intron 45.0%
GGTGGGATTCCATAGTACAT+TGG - chr5_4:4120666-4120685 Msa0831100:intron 45.0%
ACGACACTCATTGTGAAACG+GGG - chr5_4:4121231-4121250 Msa0831100:intron 45.0%
AGATTAGGAGGAGATTGGAG+AGG - chr5_4:4121419-4121438 Msa0831100:intron 45.0%
GATGGCAATAGAACTCAACC+AGG + chr5_4:4121568-4121587 None:intergenic 45.0%
CAATAGAGCTGGACCAGAAA+AGG + chr5_4:4121695-4121714 None:intergenic 45.0%
! AGAACTTCTGGTGAGGTATC+TGG + chr5_4:4121821-4121840 None:intergenic 45.0%
GCAAATGAGAACTTCTGGTG+AGG + chr5_4:4121828-4121847 None:intergenic 45.0%
ATACGTCAGCTGAATCTCAC+GGG - chr5_4:4121879-4121898 Msa0831100:intron 45.0%
ACGGGTGCTCGTCAAATATT+AGG - chr5_4:4121897-4121916 Msa0831100:intron 45.0%
CGGGTGCTCGTCAAATATTA+GGG - chr5_4:4121898-4121917 Msa0831100:intron 45.0%
TGTACCTTCCACAACAACTC+AGG + chr5_4:4122251-4122270 None:intergenic 45.0%
TTAGGCCATGCAGCATTAGT+GGG + chr5_4:4122386-4122405 None:intergenic 45.0%
AAATGCTATGGGGGGAAAAG+GGG + chr5_4:4122471-4122490 None:intergenic 45.0%
GAAATGCTATGGGGGGAAAA+GGG + chr5_4:4122472-4122491 None:intergenic 45.0%
AGAAATGCTATGGGGGGAAA+AGG + chr5_4:4122473-4122492 None:intergenic 45.0%
!! GAGCAAGAGCGCTTTATGAA+AGG - chr5_4:4122677-4122696 Msa0831100:CDS 45.0%
!! TGCCTGTTTAGAGGTGTTTG+AGG - chr5_4:4122928-4122947 Msa0831100:CDS 45.0%
AGAGAAATGGCTCAACTTGG+AGG - chr5_4:4123012-4123031 Msa0831100:CDS 45.0%
TCAACTTGGAGGCTTCATCT+GGG - chr5_4:4123023-4123042 Msa0831100:CDS 45.0%
GGTATCGTTAGCATTAGGCT+TGG - chr5_4:4123224-4123243 Msa0831100:CDS 45.0%
! TATCGACTATCTATTCCCCG+AGG - chr5_4:4123359-4123378 Msa0831100:CDS 45.0%
TGGTTGAATGTGTTTCCTCG+GGG + chr5_4:4123377-4123396 None:intergenic 45.0%
GGCTTCCATGATCTTGAGAT+TGG + chr5_4:4123397-4123416 None:intergenic 45.0%
TCATGGAAGCCGCTTACAAA+TGG - chr5_4:4123406-4123425 Msa0831100:CDS 45.0%
TAGGGTTGGGTCTGCATCTT+TGG + chr5_4:4117950-4117969 None:intergenic 50.0%
AAAGATGCAGACCCAACCCT+AGG - chr5_4:4117949-4117968 Msa0831100:three_prime_UTR 50.0%
CGAGTGAGATAACCTAGGGT+TGG + chr5_4:4117964-4117983 None:intergenic 50.0%
TGGACGTGGAAGCTTGACTT+CGG + chr5_4:4117995-4118014 None:intergenic 50.0%
TCAAGCTTCCACGTCCAACT+AGG - chr5_4:4117998-4118017 Msa0831100:three_prime_UTR 50.0%
CAAGCTTCCACGTCCAACTA+GGG - chr5_4:4117999-4118018 Msa0831100:three_prime_UTR 50.0%
TGACATTCCACCGAACTCTC+CGG + chr5_4:4118191-4118210 None:intergenic 50.0%
! GGATTTTACACGTGCGCGTT+CGG - chr5_4:4118251-4118270 Msa0831100:CDS 50.0%
!! TTCGGTTTGGGAACGAGCAT+TGG - chr5_4:4118269-4118288 Msa0831100:CDS 50.0%
! GAGGAATGTTTGGGATCGTG+CGG - chr5_4:4118368-4118387 Msa0831100:intron 50.0%
AGATGCTTGGCAATGTCGCT+GGG - chr5_4:4118445-4118464 Msa0831100:intron 50.0%
AAATGGATGCCGGATCAGCA+AGG - chr5_4:4118495-4118514 Msa0831100:intron 50.0%
AACGAGATTGAACGAGCGAG+AGG - chr5_4:4118552-4118571 Msa0831100:intron 50.0%
ACGAGATTGAACGAGCGAGA+GGG - chr5_4:4118553-4118572 Msa0831100:intron 50.0%
GAAGAATGGCGAGGTTCCTA+AGG - chr5_4:4118644-4118663 Msa0831100:CDS 50.0%
!!! GGAAGCAGAGCTGCTTTTTG+TGG - chr5_4:4118713-4118732 Msa0831100:CDS 50.0%
!!! GCTGCTTTTTGTGGCGTTTG+CGG - chr5_4:4118722-4118741 Msa0831100:CDS 50.0%
CGTTTGCGGAGTTTGAGGAA+AGG - chr5_4:4118736-4118755 Msa0831100:intron 50.0%
TGGTGATAGGGAAGGGATTG+AGG - chr5_4:4118869-4118888 Msa0831100:CDS 50.0%
!! GGAAGAGAGTGTCGGGAATA+AGG - chr5_4:4118983-4119002 Msa0831100:CDS 50.0%
AGCTAATGTTCCTCCAGCTG+AGG - chr5_4:4119037-4119056 Msa0831100:intron 50.0%
AGAACTCGATGCTGGAGACA+TGG - chr5_4:4119218-4119237 Msa0831100:intron 50.0%
ATAGAGTAGGAGACCGGTGT+TGG - chr5_4:4120112-4120131 Msa0831100:intron 50.0%
!! TTTGCATTGGCTGGGAGCAT+TGG - chr5_4:4120717-4120736 Msa0831100:intron 50.0%
!! TTGCATTGGCTGGGAGCATT+GGG - chr5_4:4120718-4120737 Msa0831100:intron 50.0%
GTTCTACAGAGAGGGCAACT+AGG + chr5_4:4120905-4120924 None:intergenic 50.0%
GGAGCGAAGTTCTACAGAGA+GGG + chr5_4:4120913-4120932 None:intergenic 50.0%
TGGAGCGAAGTTCTACAGAG+AGG + chr5_4:4120914-4120933 None:intergenic 50.0%
CGACACTCATTGTGAAACGG+GGG - chr5_4:4121232-4121251 Msa0831100:intron 50.0%
GACACTCATTGTGAAACGGG+GGG - chr5_4:4121233-4121252 Msa0831100:intron 50.0%
TGCAATTGCCCAACCAGCAT+TGG - chr5_4:4122220-4122239 Msa0831100:intron 50.0%
! AGGCATGTCCAATGCTGGTT+GGG + chr5_4:4122231-4122250 None:intergenic 50.0%
AACTCAGGCATGTCCAATGC+TGG + chr5_4:4122236-4122255 None:intergenic 50.0%
TGGACATGCCTGAGTTGTTG+TGG - chr5_4:4122240-4122259 Msa0831100:intron 50.0%
CATGCCTGAGTTGTTGTGGA+AGG - chr5_4:4122244-4122263 Msa0831100:intron 50.0%
TAGGCCATGCAGCATTAGTG+GGG + chr5_4:4122385-4122404 None:intergenic 50.0%
GTTAGGCCATGCAGCATTAG+TGG + chr5_4:4122387-4122406 None:intergenic 50.0%
! GCTGAGTTGGCAAGTTCGTT+AGG + chr5_4:4122404-4122423 None:intergenic 50.0%
AATGCTATGGGGGGAAAAGG+GGG + chr5_4:4122470-4122489 None:intergenic 50.0%
ACATACTTCTCGCACGCTGA+AGG + chr5_4:4122813-4122832 None:intergenic 50.0%
CTGGAGCTGATGATCTGAAG+TGG + chr5_4:4122964-4122983 None:intergenic 50.0%
CTCAACTTGGAGGCTTCATC+TGG - chr5_4:4123022-4123041 Msa0831100:CDS 50.0%
CAACTTGGAGGCTTCATCTG+GGG - chr5_4:4123024-4123043 Msa0831100:CDS 50.0%
CTCGCCGAGTTCGGTTGAAT+CGG + chr5_4:4118130-4118149 None:intergenic 55.0%
GAGACGATACTCGCCGAGTT+CGG + chr5_4:4118139-4118158 None:intergenic 55.0%
! AACTCGGCGAGTATCGTCTC+CGG - chr5_4:4118139-4118158 Msa0831100:three_prime_UTR 55.0%
ACAGTGGGAAGAGTCGCAGA+AGG - chr5_4:4118230-4118249 Msa0831100:CDS 55.0%
TTACACGTGCGCGTTCGGTT+TGG - chr5_4:4118256-4118275 Msa0831100:CDS 55.0%
TACACGTGCGCGTTCGGTTT+GGG - chr5_4:4118257-4118276 Msa0831100:CDS 55.0%
TACCACAACTGATCCACCCG+CGG + chr5_4:4118405-4118424 None:intergenic 55.0%
GAGATGCTTGGCAATGTCGC+TGG - chr5_4:4118444-4118463 Msa0831100:intron 55.0%
GATGCTTGGCAATGTCGCTG+GGG - chr5_4:4118446-4118465 Msa0831100:intron 55.0%
!! CGAGGCAGGTTTTCGAGAGA+TGG - chr5_4:4118469-4118488 Msa0831100:intron 55.0%
!! GTCATCCTAGGGTTGGTGCT+TGG - chr5_4:4118598-4118617 Msa0831100:CDS 55.0%
CGTATCCAAGCACCAACCCT+AGG + chr5_4:4118606-4118625 None:intergenic 55.0%
! GGAGAAGCTAGCGGATGATG+AGG - chr5_4:4118692-4118711 Msa0831100:CDS 55.0%
TGTGGCGTTTGCGGAGTTTG+AGG - chr5_4:4118731-4118750 Msa0831100:CDS 55.0%
AAATCCTCAGCCCTCCCCTT+CGG + chr5_4:4118816-4118835 None:intergenic 55.0%
GGAGGGCTGAGGATTTGTAC+CGG - chr5_4:4118820-4118839 Msa0831100:intron 55.0%
TATCGCTTCTCCTCAGCTGG+AGG + chr5_4:4119050-4119069 None:intergenic 55.0%
CAGTATCGCTTCTCCTCAGC+TGG + chr5_4:4119053-4119072 None:intergenic 55.0%
CAGCTGAGGAGAAGCGATAC+TGG - chr5_4:4119051-4119070 Msa0831100:intron 55.0%
!! TGGGCTTGGTTTGCATTGGC+TGG - chr5_4:4120708-4120727 Msa0831100:intron 55.0%
!! GGGCTTGGTTTGCATTGGCT+GGG - chr5_4:4120709-4120728 Msa0831100:intron 55.0%
CAGGCATGTCCAATGCTGGT+TGG + chr5_4:4122232-4122251 None:intergenic 55.0%
CATGCAGCATTAGTGGGGAG+GGG + chr5_4:4122380-4122399 None:intergenic 55.0%
CCATGCAGCATTAGTGGGGA+GGG + chr5_4:4122381-4122400 None:intergenic 55.0%
ATGCTATGGGGGGAAAAGGG+GGG + chr5_4:4122469-4122488 None:intergenic 55.0%
GCTTCTTGGGCAGCTTAGAC+TGG + chr5_4:4123072-4123091 None:intergenic 55.0%
GTGCGGTTACTCTCTTGCCG+CGG - chr5_4:4118385-4118404 Msa0831100:intron 60.0%
TGCGGTTACTCTCTTGCCGC+GGG - chr5_4:4118386-4118405 Msa0831100:intron 60.0%
GGATGCCGGATCAGCAAGGA+TGG - chr5_4:4118499-4118518 Msa0831100:intron 60.0%
ATGGCGAGGTTCCTAAGGCG+AGG - chr5_4:4118649-4118668 Msa0831100:CDS 60.0%
GAGAGCGGTGGAGAAGCTAG+CGG - chr5_4:4118683-4118702 Msa0831100:CDS 60.0%
GTAAGGAGGCAGAGCGTGCT+AGG - chr5_4:4118760-4118779 Msa0831100:intron 60.0%
TATTCCGAAGGGGAGGGCTG+AGG - chr5_4:4118809-4118828 Msa0831100:intron 60.0%
AGTGGGGAGGGGTGAAGGAT+AGG + chr5_4:4122369-4122388 None:intergenic 60.0%
GCATTAGTGGGGAGGGGTGA+AGG + chr5_4:4122374-4122393 None:intergenic 60.0%
CCCTCCCCACTAATGCTGCA+TGG - chr5_4:4122378-4122397 Msa0831100:intron 60.0%
GCCATGCAGCATTAGTGGGG+AGG + chr5_4:4122382-4122401 None:intergenic 60.0%
TGCTATGGGGGGAAAAGGGG+GGG + chr5_4:4122468-4122487 None:intergenic 60.0%
GAGGCTTCATCTGGGGAGCT+AGG - chr5_4:4123031-4123050 Msa0831100:CDS 60.0%
GGTTACTCTCTTGCCGCGGG+TGG - chr5_4:4118389-4118408 Msa0831100:intron 65.0%
TGCCGCGGGTGGATCAGTTG+TGG - chr5_4:4118400-4118419 Msa0831100:intron 65.0%
TTGGCAATGTCGCTGGGGCG+AGG - chr5_4:4118451-4118470 Msa0831100:intron 65.0%
TATGGGGGGAAAAGGGGGGG+GGG + chr5_4:4122465-4122484 None:intergenic 65.0%
CTATGGGGGGAAAAGGGGGG+GGG + chr5_4:4122466-4122485 None:intergenic 65.0%
GCTATGGGGGGAAAAGGGGG+GGG + chr5_4:4122467-4122486 None:intergenic 65.0%
CAATGTCGCTGGGGCGAGGC+AGG - chr5_4:4118455-4118474 Msa0831100:intron 70.0%
ATGGGGGGAAAAGGGGGGGG+GGG + chr5_4:4122464-4122483 None:intergenic 70.0%
GGGGGGGGGGGGGAGTGAAT+TGG + chr5_4:4122435-4122454 None:intergenic 75.0%
TGGGGGGAAAAGGGGGGGGG+GGG + chr5_4:4122463-4122482 None:intergenic 75.0%
! AAAAGGGGGGGGGGGGGGGG+GGG + chr5_4:4122456-4122475 None:intergenic 80.0%
! GAAAAGGGGGGGGGGGGGGG+GGG + chr5_4:4122457-4122476 None:intergenic 80.0%
! GGAAAAGGGGGGGGGGGGGG+GGG + chr5_4:4122458-4122477 None:intergenic 80.0%
! GGGAAAAGGGGGGGGGGGGG+GGG + chr5_4:4122459-4122478 None:intergenic 80.0%
! GGGGAAAAGGGGGGGGGGGG+GGG + chr5_4:4122460-4122479 None:intergenic 80.0%
! GGGGGAAAAGGGGGGGGGGG+GGG + chr5_4:4122461-4122480 None:intergenic 80.0%
! GGGGGGAAAAGGGGGGGGGG+GGG + chr5_4:4122462-4122481 None:intergenic 80.0%
! AAAGGGGGGGGGGGGGGGGG+GGG + chr5_4:4122455-4122474 None:intergenic 85.0%
! AAGGGGGGGGGGGGGGGGGG+GGG + chr5_4:4122454-4122473 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG + chr5_4:4122453-4122472 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 4117869 4123822 4117869 ID=Msa0831100;Name=Msa0831100
chr5_4 mRNA 4117869 4123822 4117869 ID=Msa0831100-mRNA-1;Parent=Msa0831100;Name=Msa0831100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=68|1|1|1|1|1|7|361|695
chr5_4 exon 4117869 4118344 4117869 ID=Msa0831100-mRNA-1:exon:1665;Parent=Msa0831100-mRNA-1
chr5_4 exon 4118557 4118752 4118557 ID=Msa0831100-mRNA-1:exon:1664;Parent=Msa0831100-mRNA-1
chr5_4 exon 4118865 4119054 4118865 ID=Msa0831100-mRNA-1:exon:1663;Parent=Msa0831100-mRNA-1
chr5_4 exon 4119426 4119644 4119426 ID=Msa0831100-mRNA-1:exon:1662;Parent=Msa0831100-mRNA-1
chr5_4 exon 4119741 4119885 4119741 ID=Msa0831100-mRNA-1:exon:1661;Parent=Msa0831100-mRNA-1
chr5_4 exon 4122429 4122494 4122429 ID=Msa0831100-mRNA-1:exon:1660;Parent=Msa0831100-mRNA-1
chr5_4 exon 4122598 4123822 4122598 ID=Msa0831100-mRNA-1:exon:1659;Parent=Msa0831100-mRNA-1
chr5_4 five_prime_UTR 4123755 4123822 4123755 ID=Msa0831100-mRNA-1:five_prime_utr;Parent=Msa0831100-mRNA-1
chr5_4 CDS 4122598 4123754 4122598 ID=Msa0831100-mRNA-1:cds;Parent=Msa0831100-mRNA-1
chr5_4 CDS 4122429 4122494 4122429 ID=Msa0831100-mRNA-1:cds;Parent=Msa0831100-mRNA-1
chr5_4 CDS 4119741 4119885 4119741 ID=Msa0831100-mRNA-1:cds;Parent=Msa0831100-mRNA-1
chr5_4 CDS 4119426 4119644 4119426 ID=Msa0831100-mRNA-1:cds;Parent=Msa0831100-mRNA-1
chr5_4 CDS 4118865 4119054 4118865 ID=Msa0831100-mRNA-1:cds;Parent=Msa0831100-mRNA-1
chr5_4 CDS 4118557 4118752 4118557 ID=Msa0831100-mRNA-1:cds;Parent=Msa0831100-mRNA-1
chr5_4 CDS 4118230 4118344 4118230 ID=Msa0831100-mRNA-1:cds;Parent=Msa0831100-mRNA-1
chr5_4 three_prime_UTR 4117869 4118229 4117869 ID=Msa0831100-mRNA-1:three_prime_utr;Parent=Msa0831100-mRNA-1
Gene Sequence

>Msa0831100

ATGTCTTCTTCCAAAGATGCAGACCCAACCCTAGGTTATCTCACTCGAAAAGACACCGAAGTCAAGCTTCCACGTCCAACTAGGGTTAAGAACAAAACCCCCGCTCCAATTCAAATCACAGCGGAGCAAATTCTTCGTGAAGCTAGGGAGCGTCAAGAAGCTGAGATCCGTCCTCCGAAACAGAAAATCACCGATTCAACCGAACTCGGCGAGTATCGTCTCCGGAAAAGAAAGGAATTCGAGGATTTAATCCGGAGAGTTCGGTGGAATGTCAGTGTTTGGATTAAGTATGCACAGTGGGAAGAGTCGCAGAAGGATTTTACACGTGCGCGTTCGGTTTGGGAACGAGCATTGGAAGTTGATTATAAGAATCATACTCTGTGGTTGAAGTATGCTGAAGTTGAGATGAAGAATAAGTTTATTAATCATGCGAGGAATGTTTGGGATCGTGCGGTTACTCTCTTGCCGCGGGTGGATCAGTTGTGGTATAAGTATATTCATATGGAGGAGATGCTTGGCAATGTCGCTGGGGCGAGGCAGGTTTTCGAGAGATGGATGAAATGGATGCCGGATCAGCAAGGATGGTTATCTTATATAAAATTTGAGCTGAGATATAACGAGATTGAACGAGCGAGAGGGATTTTCGAGAGATTTGTTTTGTGTCATCCTAGGGTTGGTGCTTGGATACGCTATGCGAAGTTTGAGATGAAGAATGGCGAGGTTCCTAAGGCGAGGAATGTTTATGAGAGAGCGGTGGAGAAGCTAGCGGATGATGAGGAAGCAGAGCTGCTTTTTGTGGCGTTTGCGGAGTTTGAGGAAAGGTGTAAGGAGGCAGAGCGTGCTAGGTGTATTTATAAATTTGCACTTGATCATATTCCGAAGGGGAGGGCTGAGGATTTGTACCGGAAGTTTGTGGCATTTGAGAAACAGTATGGTGATAGGGAAGGGATTGAGGATGCTATTGTTGGGAAGAGAAGGTTTCAGTATGAAGATGAAGTGAGGAAAAATCCGTTGAATTATGATTCGTGGTTTGATTATATAAGATTGGAAGAGAGTGTCGGGAATAAGGAAAGAACTAGGGAGGTTTATGAGAGAGCTATAGCTAATGTTCCTCCAGCTGAGGAGAAGCGATACTGGCAGCGCTATATTTATTTGTGGATTAATTATGCACTCTATGAAGAACTCGATGCTGGAGACATGGAGCGAACAAGAGATGTGTACAAGGAGTGTCTCAACCAGATACCTCACCAGAAGTTCTCATTTGCAAAGATATGGCTTCTAGCAGCCCAGTTTGAAATACGTCAGCTGAATCTCACGGGTGCTCGTCAAATATTAGGGAATGCTATTGGAAAGGCTCCTAAAGATAAGATATTTAAGAAGTATATAGAGATAGAACTGCAGCTTGGTAATATAGATCGATGCAGAAAACTATATGAAAAGTATTTGGAGTGGTCACCTGAAAATTGCTATGCATGGAGCAAGTATGCAGAACTAGAGAGATCTTTAGCTGAGACTGAACGAGCTAGAGCAATATTTGAGCTTGCAATTGCCCAACCAGCATTGGACATGCCTGAGTTGTTGTGGAAGGCATACATTGATTTTGAAACTGCCGAGTGTGAATTTGATAGAGCAAGAGCGCTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTATGGCAGAGCTATGCAGAGTTTGAAGCAACAGCTATAGATGAGAGTTTAGAATTATCGGAACAAGAACAAAAGGAGCAGTGCCTTCAGCGTGCGAGAAAGGTGTTTGAGGATGCTCTAAACCACTTCAGATCATCAGCTCCAGATTTAAAAGAAGAAAGGGCAATGCTATTAGAGAAATGGCTCAACTTGGAGGCTTCATCTGGGGAGCTAGGTGATGTCAGCTTAGTCCAGTCTAAGCTGCCCAAGAAGCTCAAGAAGAGAAGACAAGTTTCTACTGAAGATGGTTCTTCTAGAATGGAAGAATTTATCGACTATCTATTCCCCGAGGAAACACATTCAACCAATCTCAAGATCATGGAAGCCGCTTACAAATGGAAGAAGCAAAAATTGTCTAATGCTGATGAATAA

Protein sequence

>Msa0831100

MSSSKDADPTLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELGEYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFTRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQVFERWMKWMPDQQGWLSYIKFELRYNEIERARGIFERFVLCHPRVGAWIRYAKFEMKNGEVPKARNVYERAVEKLADDEEAELLFVAFAEFEERCKEAERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGNKERTREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYKECLNQIPHQKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLAETERARAIFELAIAQPALDMPELLWKAYIDFETAECEFDRARALYERLLDRTKHLKVWQSYAEFEATAIDESLELSEQEQKEQCLQRARKVFEDALNHFRSSAPDLKEERAMLLEKWLNLEASSGELGDVSLVQSKLPKKLKKRRQVSTEDGSSRMEEFIDYLFPEETHSTNLKIMEAAYKWKKQKLSNADE*