Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358770 | XP_013459620.1 | 96.785 | 311 | 10 | 0 | 1 | 311 | 1 | 311 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358770 | sp|Q9FNN2|WDR26_ARATH | 44.444 | 297 | 148 | 6 | 1 | 283 | 1 | 294 | 7.83e-70 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358770 | A0A072UW48 | 96.785 | 311 | 10 | 0 | 1 | 311 | 1 | 311 | 0.0 | 616 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa0358770 | 0.819857 | 9.316217e-53 | -8.615850e-47 |
| Msa0008090 | Msa0358770 | 0.814956 | 1.183222e-51 | -8.615850e-47 |
| Msa0008200 | Msa0358770 | 0.803413 | 3.528445e-49 | -8.615850e-47 |
| Msa0020390 | Msa0358770 | 0.835639 | 1.492410e-56 | -8.615850e-47 |
| Msa0029260 | Msa0358770 | 0.832169 | 1.102222e-55 | -8.615850e-47 |
| Msa0033880 | Msa0358770 | 0.821770 | 3.382846e-53 | -8.615850e-47 |
| Msa0038870 | Msa0358770 | 0.819729 | 9.967707e-53 | -8.615850e-47 |
| Msa0043860 | Msa0358770 | 0.867439 | 1.367719e-65 | -8.615850e-47 |
| Msa0055100 | Msa0358770 | 0.832985 | 6.916223e-56 | -8.615850e-47 |
| Msa0056270 | Msa0358770 | 0.806696 | 7.256494e-50 | -8.615850e-47 |
| Msa0059950 | Msa0358770 | 0.803294 | 3.733856e-49 | -8.615850e-47 |
| Msa0068000 | Msa0358770 | 0.855361 | 6.641079e-62 | -8.615850e-47 |
| Msa0068020 | Msa0358770 | 0.906800 | 1.006896e-80 | -8.615850e-47 |
| Msa0077010 | Msa0358770 | 0.852827 | 3.574249e-61 | -8.615850e-47 |
| Msa0077900 | Msa0358770 | 0.808634 | 2.812140e-50 | -8.615850e-47 |
| Msa0091610 | Msa0358770 | 0.810438 | 1.152723e-50 | -8.615850e-47 |
| Msa0093010 | Msa0358770 | 0.813036 | 3.136127e-51 | -8.615850e-47 |
| Msa0095360 | Msa0358770 | 0.808758 | 2.646441e-50 | -8.615850e-47 |
| Msa0095770 | Msa0358770 | 0.804319 | 2.286609e-49 | -8.615850e-47 |
| Msa0101180 | Msa0358770 | 0.818924 | 1.520440e-52 | -8.615850e-47 |
| Msa0113130 | Msa0358770 | 0.830982 | 2.160545e-55 | -8.615850e-47 |
| Msa0113240 | Msa0358770 | 0.873072 | 1.951646e-67 | -8.615850e-47 |
| Msa0115370 | Msa0358770 | 0.822946 | 1.804805e-53 | -8.615850e-47 |
| Msa0126840 | Msa0358770 | 0.830465 | 2.893219e-55 | -8.615850e-47 |
| Msa0127850 | Msa0358770 | 0.820235 | 7.634201e-53 | -8.615850e-47 |
| Msa0159420 | Msa0358770 | 0.842121 | 3.137813e-58 | -8.615850e-47 |
| Msa0159440 | Msa0358770 | 0.837200 | 5.980435e-57 | -8.615850e-47 |
| Msa0165950 | Msa0358770 | 0.832295 | 1.025380e-55 | -8.615850e-47 |
| Msa0166750 | Msa0358770 | 0.815594 | 8.533778e-52 | -8.615850e-47 |
| Msa0167480 | Msa0358770 | 0.803233 | 3.844881e-49 | -8.615850e-47 |
| Msa0169300 | Msa0358770 | 0.830876 | 2.293598e-55 | -8.615850e-47 |
| Msa0171940 | Msa0358770 | 0.802057 | 6.718894e-49 | -8.615850e-47 |
| Msa0174000 | Msa0358770 | 0.809700 | 1.662340e-50 | -8.615850e-47 |
| Msa0177960 | Msa0358770 | 0.815017 | 1.146499e-51 | -8.615850e-47 |
| Msa0190590 | Msa0358770 | 0.851628 | 7.839184e-61 | -8.615850e-47 |
| Msa0191070 | Msa0358770 | 0.808219 | 3.449122e-50 | -8.615850e-47 |
| Msa0191080 | Msa0358770 | 0.804403 | 2.197042e-49 | -8.615850e-47 |
| Msa0217670 | Msa0358770 | 0.800288 | 1.546279e-48 | -8.615850e-47 |
| Msa0226330 | Msa0358770 | 0.801509 | 8.709003e-49 | -8.615850e-47 |
| Msa0230520 | Msa0358770 | 0.809737 | 1.632349e-50 | -8.615850e-47 |
| Msa0231100 | Msa0358770 | 0.835103 | 2.038706e-56 | -8.615850e-47 |
| Msa0231790 | Msa0358770 | 0.816090 | 6.614538e-52 | -8.615850e-47 |
| Msa0244980 | Msa0358770 | 0.829793 | 4.218962e-55 | -8.615850e-47 |
| Msa0245060 | Msa0358770 | 0.847154 | 1.383461e-59 | -8.615850e-47 |
| Msa0245430 | Msa0358770 | 0.845842 | 3.154624e-59 | -8.615850e-47 |
| Msa0245580 | Msa0358770 | 0.833924 | 4.031802e-56 | -8.615850e-47 |
| Msa0257490 | Msa0358770 | 0.828282 | 9.804639e-55 | -8.615850e-47 |
| Msa0269470 | Msa0358770 | 0.817969 | 2.502156e-52 | -8.615850e-47 |
| Msa0271360 | Msa0358770 | 0.805037 | 1.619810e-49 | -8.615850e-47 |
| Msa0275360 | Msa0358770 | 0.822007 | 2.981315e-53 | -8.615850e-47 |
| Msa0280430 | Msa0358770 | 0.819934 | 8.946899e-53 | -8.615850e-47 |
| Msa0281530 | Msa0358770 | 0.806512 | 7.934880e-50 | -8.615850e-47 |
| Msa0296250 | Msa0358770 | 0.816967 | 4.208646e-52 | -8.615850e-47 |
| Msa0296790 | Msa0358770 | 0.839682 | 1.368845e-57 | -8.615850e-47 |
| Msa0296920 | Msa0358770 | 0.826273 | 2.969637e-54 | -8.615850e-47 |
| Msa0304590 | Msa0358770 | 0.800717 | 1.264057e-48 | -8.615850e-47 |
| Msa0304660 | Msa0358770 | 0.810574 | 1.077324e-50 | -8.615850e-47 |
| Msa0311720 | Msa0358770 | 0.805123 | 1.553920e-49 | -8.615850e-47 |
| Msa0317910 | Msa0358770 | 0.807908 | 4.015811e-50 | -8.615850e-47 |
| Msa0320590 | Msa0358770 | 0.808709 | 2.711194e-50 | -8.615850e-47 |
| Msa0331700 | Msa0358770 | 0.808731 | 2.681116e-50 | -8.615850e-47 |
| Msa0348830 | Msa0358770 | 0.824409 | 8.199193e-54 | -8.615850e-47 |
| Msa0358770 | Msa0376820 | 0.816318 | 5.881834e-52 | -8.615850e-47 |
| Msa0358770 | Msa0384880 | 0.800392 | 1.472329e-48 | -8.615850e-47 |
| Msa0358770 | Msa0385500 | 0.847297 | 1.264120e-59 | -8.615850e-47 |
| Msa0358770 | Msa0389510 | 0.824286 | 8.765823e-54 | -8.615850e-47 |
| Msa0358770 | Msa0404910 | 0.863935 | 1.745332e-64 | -8.615850e-47 |
| Msa0358770 | Msa0413530 | 0.807534 | 4.824033e-50 | -8.615850e-47 |
| Msa0358770 | Msa0423750 | 0.817966 | 2.507079e-52 | -8.615850e-47 |
| Msa0358770 | Msa0427860 | -0.815372 | 9.560300e-52 | -8.615850e-47 |
| Msa0358770 | Msa0443390 | 0.825910 | 3.621964e-54 | -8.615850e-47 |
| Msa0358770 | Msa0450930 | 0.839879 | 1.216757e-57 | -8.615850e-47 |
| Msa0358770 | Msa0458060 | 0.802289 | 6.020321e-49 | -8.615850e-47 |
| Msa0358770 | Msa0458640 | 0.813109 | 3.022542e-51 | -8.615850e-47 |
| Msa0358770 | Msa0465550 | 0.804811 | 1.806066e-49 | -8.615850e-47 |
| Msa0358770 | Msa0472130 | 0.813825 | 2.104265e-51 | -8.615850e-47 |
| Msa0358770 | Msa0474090 | -0.812241 | 4.679960e-51 | -8.615850e-47 |
| Msa0358770 | Msa0479330 | 0.802414 | 5.674668e-49 | -8.615850e-47 |
| Msa0358770 | Msa0481480 | 0.802724 | 4.898377e-49 | -8.615850e-47 |
| Msa0358770 | Msa0484740 | 0.813089 | 3.053463e-51 | -8.615850e-47 |
| Msa0358770 | Msa0490820 | 0.802325 | 5.919682e-49 | -8.615850e-47 |
| Msa0358770 | Msa0511770 | 0.805672 | 1.192292e-49 | -8.615850e-47 |
| Msa0358770 | Msa0534750 | 0.836426 | 9.426371e-57 | -8.615850e-47 |
| Msa0358770 | Msa0542560 | 0.811643 | 6.317798e-51 | -8.615850e-47 |
| Msa0358770 | Msa0544540 | 0.805353 | 1.390478e-49 | -8.615850e-47 |
| Msa0358770 | Msa0550540 | 0.805151 | 1.533310e-49 | -8.615850e-47 |
| Msa0358770 | Msa0550570 | 0.814537 | 1.464834e-51 | -8.615850e-47 |
| Msa0358770 | Msa0580230 | 0.832417 | 9.568690e-56 | -8.615850e-47 |
| Msa0358770 | Msa0580280 | 0.821971 | 3.040363e-53 | -8.615850e-47 |
| Msa0358770 | Msa0581110 | 0.825937 | 3.569953e-54 | -8.615850e-47 |
| Msa0358770 | Msa0581130 | 0.817620 | 3.000589e-52 | -8.615850e-47 |
| Msa0358770 | Msa0593700 | 0.837824 | 4.139277e-57 | -8.615850e-47 |
| Msa0358770 | Msa0600080 | 0.808787 | 2.608150e-50 | -8.615850e-47 |
| Msa0358770 | Msa0603570 | 0.831593 | 1.528822e-55 | -8.615850e-47 |
| Msa0358770 | Msa0607690 | 0.811369 | 7.248058e-51 | -8.615850e-47 |
| Msa0358770 | Msa0609000 | 0.844399 | 7.744118e-59 | -8.615850e-47 |
| Msa0358770 | Msa0610390 | 0.818042 | 2.409543e-52 | -8.615850e-47 |
| Msa0358770 | Msa0610550 | 0.825752 | 3.950133e-54 | -8.615850e-47 |
| Msa0358770 | Msa0615580 | 0.819297 | 1.250661e-52 | -8.615850e-47 |
| Msa0358770 | Msa0618930 | 0.836586 | 8.578159e-57 | -8.615850e-47 |
| Msa0358770 | Msa0619920 | 0.803069 | 4.156790e-49 | -8.615850e-47 |
| Msa0358770 | Msa0631350 | 0.836607 | 8.476560e-57 | -8.615850e-47 |
| Msa0358770 | Msa0633570 | 0.828457 | 8.895985e-55 | -8.615850e-47 |
| Msa0358770 | Msa0642970 | 0.826920 | 2.081079e-54 | -8.615850e-47 |
| Msa0358770 | Msa0662630 | 0.827383 | 1.612564e-54 | -8.615850e-47 |
| Msa0358770 | Msa0665440 | 0.807733 | 4.376761e-50 | -8.615850e-47 |
| Msa0358770 | Msa0666230 | 0.829243 | 5.741023e-55 | -8.615850e-47 |
| Msa0358770 | Msa0672100 | 0.811641 | 6.325772e-51 | -8.615850e-47 |
| Msa0358770 | Msa0689500 | 0.812201 | 4.775694e-51 | -8.615850e-47 |
| Msa0358770 | Msa0690770 | 0.801701 | 7.952533e-49 | -8.615850e-47 |
| Msa0358770 | Msa0691690 | 0.823732 | 1.182276e-53 | -8.615850e-47 |
| Msa0358770 | Msa0692940 | 0.820859 | 5.490770e-53 | -8.615850e-47 |
| Msa0358770 | Msa0693210 | 0.865154 | 7.255404e-65 | -8.615850e-47 |
| Msa0358770 | Msa0694990 | 0.806835 | 6.783537e-50 | -8.615850e-47 |
| Msa0358770 | Msa0699190 | 0.842433 | 2.593879e-58 | -8.615850e-47 |
| Msa0358770 | Msa0752700 | 0.824524 | 7.705522e-54 | -8.615850e-47 |
| Msa0358770 | Msa0781270 | 0.806121 | 9.592771e-50 | -8.615850e-47 |
| Msa0358770 | Msa0794970 | 0.805753 | 1.146583e-49 | -8.615850e-47 |
| Msa0358770 | Msa0800370 | 0.813524 | 2.451088e-51 | -8.615850e-47 |
| Msa0358770 | Msa0805500 | 0.811208 | 7.852565e-51 | -8.615850e-47 |
| Msa0358770 | Msa0806880 | 0.805341 | 1.398954e-49 | -8.615850e-47 |
| Msa0358770 | Msa0808800 | 0.808095 | 3.664372e-50 | -8.615850e-47 |
| Msa0358770 | Msa0822170 | 0.811411 | 7.094536e-51 | -8.615850e-47 |
| Msa0358770 | Msa0822180 | 0.834871 | 2.332145e-56 | -8.615850e-47 |
| Msa0358770 | Msa0829220 | 0.801759 | 7.737776e-49 | -8.615850e-47 |
| Msa0358770 | Msa0831100 | 0.813655 | 2.293726e-51 | -8.615850e-47 |
| Msa0358770 | Msa0838370 | 0.842853 | 2.006879e-58 | -8.615850e-47 |
| Msa0358770 | Msa0858440 | 0.840415 | 8.813967e-58 | -8.615850e-47 |
| Msa0358770 | Msa0880730 | 0.821619 | 3.666317e-53 | -8.615850e-47 |
| Msa0358770 | Msa0913240 | 0.848582 | 5.592283e-60 | -8.615850e-47 |
| Msa0358770 | Msa0921870 | 0.804700 | 1.904596e-49 | -8.615850e-47 |
| Msa0358770 | Msa0943170 | 0.815259 | 1.013145e-51 | -8.615850e-47 |
| Msa0358770 | Msa0944200 | 0.816757 | 4.691860e-52 | -8.615850e-47 |
| Msa0358770 | Msa0960830 | 0.824792 | 6.661930e-54 | -8.615850e-47 |
| Msa0358770 | Msa0963020 | 0.831729 | 1.415525e-55 | -8.615850e-47 |
| Msa0358770 | Msa0968440 | 0.804346 | 2.257783e-49 | -8.615850e-47 |
| Msa0358770 | Msa0994290 | 0.808344 | 3.242957e-50 | -8.615850e-47 |
| Msa0358770 | Msa1019240 | 0.802676 | 5.011048e-49 | -8.615850e-47 |
| Msa0358770 | Msa1025940 | 0.834135 | 3.570777e-56 | -8.615850e-47 |
| Msa0358770 | Msa1029970 | 0.813049 | 3.116247e-51 | -8.615850e-47 |
| Msa0358770 | Msa1039810 | 0.801485 | 8.807946e-49 | -8.615850e-47 |
| Msa0358770 | Msa1039900 | 0.824050 | 9.956524e-54 | -8.615850e-47 |
| Msa0358770 | Msa1072710 | 0.829997 | 3.762606e-55 | -8.615850e-47 |
| Msa0358770 | Msa1083880 | 0.814303 | 1.649861e-51 | -8.615850e-47 |
| Msa0358770 | Msa1089320 | 0.805978 | 1.028072e-49 | -8.615850e-47 |
| Msa0358770 | Msa1104210 | 0.802629 | 5.123212e-49 | -8.615850e-47 |
| Msa0358770 | Msa1109780 | -0.812874 | 3.404100e-51 | -8.615850e-47 |
| Msa0358770 | Msa1126830 | 0.826854 | 2.158939e-54 | -8.615850e-47 |
| Msa0358770 | Msa1126850 | 0.802359 | 5.824361e-49 | -8.615850e-47 |
| Msa0358770 | Msa1128280 | 0.811476 | 6.870257e-51 | -8.615850e-47 |
| Msa0358770 | Msa1165270 | 0.829002 | 6.566169e-55 | -8.615850e-47 |
| Msa0358770 | Msa1165780 | 0.854117 | 1.523708e-61 | -8.615850e-47 |
| Msa0358770 | Msa1165960 | 0.819919 | 9.019594e-53 | -8.615850e-47 |
| Msa0358770 | Msa1166870 | 0.817527 | 3.148599e-52 | -8.615850e-47 |
| Msa0358770 | Msa1175350 | 0.823104 | 1.657400e-53 | -8.615850e-47 |
| Msa0358770 | Msa1179950 | 0.817567 | 3.083660e-52 | -8.615850e-47 |
| Msa0358770 | Msa1179980 | 0.834768 | 2.476539e-56 | -8.615850e-47 |
| Msa0358770 | Msa1184370 | 0.808134 | 3.595547e-50 | -8.615850e-47 |
| Msa0358770 | Msa1202580 | 0.807722 | 4.400234e-50 | -8.615850e-47 |
| Msa0358770 | Msa1206650 | 0.822220 | 2.661440e-53 | -8.615850e-47 |
| Msa0358770 | Msa1208020 | 0.832598 | 8.626414e-56 | -8.615850e-47 |
| Msa0358770 | Msa1211830 | 0.827595 | 1.434099e-54 | -8.615850e-47 |
| Msa0358770 | Msa1218500 | 0.826155 | 3.168644e-54 | -8.615850e-47 |
| Msa0358770 | Msa1227690 | 0.811656 | 6.278081e-51 | -8.615850e-47 |
| Msa0358770 | Msa1256770 | 0.836978 | 6.815462e-57 | -8.615850e-47 |
| Msa0358770 | Msa1264210 | 0.806869 | 6.672183e-50 | -8.615850e-47 |
| Msa0358770 | Msa1270620 | 0.826721 | 2.321790e-54 | -8.615850e-47 |
| Msa0358770 | Msa1270690 | 0.830220 | 3.319654e-55 | -8.615850e-47 |
| Msa0358770 | Msa1278900 | 0.812783 | 3.563376e-51 | -8.615850e-47 |
| Msa0358770 | Msa1295110 | 0.808505 | 2.996595e-50 | -8.615850e-47 |
| Msa0358770 | Msa1296830 | 0.809906 | 1.500697e-50 | -8.615850e-47 |
| Msa0358770 | Msa1298050 | 0.819129 | 1.365813e-52 | -8.615850e-47 |
| Msa0358770 | Msa1306990 | 0.804628 | 1.971792e-49 | -8.615850e-47 |
| Msa0358770 | Msa1307180 | 0.806690 | 7.278749e-50 | -8.615850e-47 |
| Msa0358770 | Msa1315890 | 0.801437 | 9.010168e-49 | -8.615850e-47 |
| Msa0358770 | Msa1316360 | 0.819491 | 1.129608e-52 | -8.615850e-47 |
| Msa0358770 | Msa1331250 | 0.821738 | 3.441911e-53 | -8.615850e-47 |
| Msa0358770 | Msa1336560 | 0.816092 | 6.609768e-52 | -8.615850e-47 |
| Msa0358770 | Msa1349570 | 0.804929 | 1.706062e-49 | -8.615850e-47 |
| Msa0358770 | Msa1351540 | 0.825793 | 3.862227e-54 | -8.615850e-47 |
| Msa0358770 | Msa1362420 | 0.812331 | 4.474269e-51 | -8.615850e-47 |
| Msa0358770 | Msa1364210 | 0.805997 | 1.018709e-49 | -8.615850e-47 |
| Msa0358770 | Msa1369190 | 0.829873 | 4.035331e-55 | -8.615850e-47 |
| Msa0358770 | Msa1413260 | 0.802638 | 5.101803e-49 | -8.615850e-47 |
| Msa0358770 | Msa1425670 | 0.817244 | 3.646417e-52 | -8.615850e-47 |
| Msa0358770 | Msa1436520 | 0.826666 | 2.393588e-54 | -8.615850e-47 |
| Msa0358770 | Msa1447890 | 0.810409 | 1.169442e-50 | -8.615850e-47 |
| Msa0358770 | Msa1450280 | 0.819259 | 1.276074e-52 | -8.615850e-47 |
| Msa0358770 | Msa1456050 | 0.803481 | 3.415766e-49 | -8.615850e-47 |
| Msa0358770 | Msa1462860 | 0.825132 | 5.537705e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358770 | MtrunA17_Chr3g0095471 | 96.785 | 311 | 10 | 0 | 1 | 311 | 1 | 311 | 0.0 | 616 |
| Msa0358770 | MtrunA17_Chr3g0095501 | 66.090 | 289 | 89 | 3 | 1 | 281 | 1 | 288 | 5.46e-114 | 341 |
| Msa0358770 | MtrunA17_Chr5g0442391 | 57.785 | 289 | 107 | 5 | 1 | 281 | 1 | 282 | 2.28e-91 | 282 |
| Msa0358770 | MtrunA17_Chr1g0183051 | 32.212 | 208 | 132 | 3 | 46 | 252 | 7 | 206 | 2.41e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358770 | AT5G08560.1 | 44.444 | 297 | 148 | 6 | 1 | 283 | 1 | 294 | 7.96e-71 | 230 |
| Msa0358770 | AT5G08560.2 | 44.444 | 297 | 148 | 6 | 1 | 283 | 1 | 294 | 7.96e-71 | 230 |
| Msa0358770 | AT5G08560.3 | 44.444 | 297 | 148 | 6 | 1 | 283 | 1 | 294 | 7.96e-71 | 230 |
| Msa0358770 | AT5G43920.1 | 33.333 | 240 | 152 | 5 | 46 | 281 | 7 | 242 | 2.97e-27 | 111 |
Find 84 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGCCAAGGTGGTTCTTC+CGG | 0.265995 | 3_1:+44325438 | Msa0358770:CDS |
| ATTTGTATCTAGGCAGTCTT+TGG | 0.284144 | 3_1:+44324866 | Msa0358770:intron |
| CTGGCCAAGGTGGTTCTTCC+GGG | 0.287686 | 3_1:+44325439 | Msa0358770:CDS |
| AACTTGTCCAGAGCTGATTT+TGG | 0.291966 | 3_1:+44325717 | Msa0358770:CDS |
| GAGGAGGAGGGGTTCGAAAT+AGG | 0.313413 | 3_1:-44325824 | None:intergenic |
| ACCTAATAGTTCATCTTCTA+TGG | 0.313662 | 3_1:+44324966 | Msa0358770:CDS |
| GTCGTTCCCTTCGGCTGATC+GGG | 0.315302 | 3_1:-44325028 | None:intergenic |
| TGTTGTTGGTTATTATTTCA+TGG | 0.318147 | 3_1:+44324897 | Msa0358770:exon |
| CCGATGAGCGATCGGTGATA+TGG | 0.341387 | 3_1:-44323440 | None:intergenic |
| GAAGTATAAGCTTGATTAGT+AGG | 0.346896 | 3_1:-44325666 | None:intergenic |
| CTGTTTATGCAGCAAGTACT+TGG | 0.358690 | 3_1:+44325195 | Msa0358770:CDS |
| AGCAAGTACTTGGCGGTGAT+TGG | 0.361938 | 3_1:+44325205 | Msa0358770:CDS |
| CTAGCCACATTGAAACAAAT+TGG | 0.364435 | 3_1:+44325237 | Msa0358770:CDS |
| CCAATCGCCTTCTTCTGCTT+TGG | 0.374720 | 3_1:+44323368 | Msa0358770:five_prime_UTR |
| CGTCGTTCCCTTCGGCTGAT+CGG | 0.395480 | 3_1:-44325029 | None:intergenic |
| TCTTCTATGGAGCACGTTGT+AGG | 0.395510 | 3_1:+44324979 | Msa0358770:CDS |
| TGAGCTTATTGATGGGGATA+AGG | 0.407133 | 3_1:+44325320 | Msa0358770:CDS |
| GTTGTTGGTTATTATTTCAT+GGG | 0.409381 | 3_1:+44324898 | Msa0358770:exon |
| GACGAAGTTGTTGGCACAAA+AGG | 0.411543 | 3_1:+44325048 | Msa0358770:CDS |
| CAGAGAAAGAAAAGAGAAAT+CGG | 0.429177 | 3_1:+44323399 | Msa0358770:five_prime_UTR |
| GAAAAGAGAAATCGGTTTGA+GGG | 0.431198 | 3_1:+44323407 | Msa0358770:five_prime_UTR |
| TCCATAGAAGATGAACTATT+AGG | 0.439662 | 3_1:-44324967 | None:intergenic |
| TTTAAAATCTATTGAGGAGG+AGG | 0.444056 | 3_1:-44325837 | None:intergenic |
| TCCTGCTTCATGTCACCCTC+TGG | 0.448042 | 3_1:+44325420 | Msa0358770:CDS |
| AGAAAAGAGAAATCGGTTTG+AGG | 0.450404 | 3_1:+44323406 | Msa0358770:five_prime_UTR |
| ACCGATCGCTCATCGGAATC+CGG | 0.455944 | 3_1:+44323447 | Msa0358770:five_prime_UTR |
| AAATCTTCCAAAATCAGCTC+TGG | 0.468825 | 3_1:-44325724 | None:intergenic |
| AGGCTCAACAAGTGACTTGA+TGG | 0.473288 | 3_1:+44324999 | Msa0358770:CDS |
| ACCAAGAGAATACATCGCTT+TGG | 0.476220 | 3_1:-44325106 | None:intergenic |
| TTAAAATCTATTGAGGAGGA+GGG | 0.486898 | 3_1:-44325836 | None:intergenic |
| TGTATCTAGGCAGTCTTTGG+AGG | 0.489612 | 3_1:+44324869 | Msa0358770:intron |
| TTCATGTCACCCTCTGGCCA+AGG | 0.491036 | 3_1:+44325426 | Msa0358770:CDS |
| AACAACTTCGTCGTTCCCTT+CGG | 0.493389 | 3_1:-44325037 | None:intergenic |
| GCAAGTACTTGGCGGTGATT+GGG | 0.500806 | 3_1:+44325206 | Msa0358770:CDS |
| AGAAGATGAAAGCATCGTTA+AGG | 0.501049 | 3_1:+44325263 | Msa0358770:CDS |
| ACCAAAGCGATGTATTCTCT+TGG | 0.502163 | 3_1:+44325105 | Msa0358770:CDS |
| GAACACCTAGAGGAGGAGTC+TGG | 0.502621 | 3_1:+44325144 | Msa0358770:CDS |
| TTCCTTGTGTCGCAACGCGT+TGG | 0.514667 | 3_1:+44325596 | Msa0358770:CDS |
| ATTTGTCAGTACTGCTGAAA+GGG | 0.515762 | 3_1:+44325743 | Msa0358770:CDS |
| TGTTTCTGATGATAACGAAT+CGG | 0.517284 | 3_1:+44325692 | Msa0358770:CDS |
| GCCAGAGGGTGACATGAAGC+AGG | 0.519258 | 3_1:-44325421 | None:intergenic |
| ACGAAGTTGTTGGCACAAAA+GGG | 0.520425 | 3_1:+44325049 | Msa0358770:CDS |
| CCATATCACCGATCGCTCAT+CGG | 0.521744 | 3_1:+44323440 | Msa0358770:five_prime_UTR |
| ATCCAACGCGTTGCGACACA+AGG | 0.527126 | 3_1:-44325598 | None:intergenic |
| TGCCCTTACAAAATCTCGCC+CGG | 0.534345 | 3_1:-44325457 | None:intergenic |
| TCGTCATGTTCAGATGACTT+TGG | 0.542727 | 3_1:+44325630 | Msa0358770:CDS |
| CCAAAGCAGAAGAAGGCGAT+TGG | 0.543283 | 3_1:-44323368 | None:intergenic |
| TCAGGTATCATTACAGTCGA+GGG | 0.553135 | 3_1:-44325522 | None:intergenic |
| GAAGGGAACGACGAAGTTGT+TGG | 0.555815 | 3_1:+44325039 | Msa0358770:CDS |
| GTATGCCAGACTCCTCCTCT+AGG | 0.556041 | 3_1:-44325149 | None:intergenic |
| CAAGGAAGCTACTCGTTCCA+TGG | 0.556398 | 3_1:-44325580 | None:intergenic |
| AGCTACTCGTTCCATGGTGA+GGG | 0.556455 | 3_1:-44325574 | None:intergenic |
| TTCAGGTATCATTACAGTCG+AGG | 0.557702 | 3_1:-44325523 | None:intergenic |
| TTTATGCAGCAAGTACTTGG+CGG | 0.558318 | 3_1:+44325198 | Msa0358770:CDS |
| GTTGGTTATTATTTCATGGG+AGG | 0.563350 | 3_1:+44324901 | Msa0358770:exon |
| GCTCCGCCCCGATCAGCCGA+AGG | 0.564526 | 3_1:+44325021 | Msa0358770:CDS |
| TAAAATCTATTGAGGAGGAG+GGG | 0.564663 | 3_1:-44325835 | None:intergenic |
| TTATTATTTCATGGGAGGTG+TGG | 0.569082 | 3_1:+44324906 | Msa0358770:exon |
| GCCGGATTCCGATGAGCGAT+CGG | 0.570955 | 3_1:-44323448 | None:intergenic |
| CTGCTCCAATATTAAAAGTG+AGG | 0.572912 | 3_1:-44325289 | None:intergenic |
| AGCAGAAGAAGGCGATTGGA+TGG | 0.573629 | 3_1:-44323364 | None:intergenic |
| GAAGAACCACCTTGGCCAGA+GGG | 0.573757 | 3_1:-44325435 | None:intergenic |
| AAGCTACTCGTTCCATGGTG+AGG | 0.576410 | 3_1:-44325575 | None:intergenic |
| GATTTGTCAGTACTGCTGAA+AGG | 0.578338 | 3_1:+44325742 | Msa0358770:CDS |
| GCACTTACCAAAGCAGAAGA+AGG | 0.586991 | 3_1:-44323375 | None:intergenic |
| ATGTCACCCTCTGGCCAAGG+TGG | 0.595449 | 3_1:+44325429 | Msa0358770:CDS |
| TCGTTCCCTTCGGCTGATCG+GGG | 0.602007 | 3_1:-44325027 | None:intergenic |
| AAAAGCGATCTGAAGTTCGC+CGG | 0.603308 | 3_1:-44323466 | None:intergenic |
| TATACCAATTTGTTTCAATG+TGG | 0.605452 | 3_1:-44325241 | None:intergenic |
| CTCGCCCGGAAGAACCACCT+TGG | 0.608997 | 3_1:-44325443 | None:intergenic |
| CTCCGCCCCGATCAGCCGAA+GGG | 0.614039 | 3_1:+44325022 | Msa0358770:CDS |
| TAATTTAAAATCTATTGAGG+AGG | 0.624087 | 3_1:-44325840 | None:intergenic |
| TTTACCGCAGACGAATTCAA+AGG | 0.627122 | 3_1:-44325171 | None:intergenic |
| GGAAGAACCACCTTGGCCAG+AGG | 0.628654 | 3_1:-44325436 | None:intergenic |
| TGTCAGTACTGCTGAAAGGG+TGG | 0.632691 | 3_1:+44325746 | Msa0358770:CDS |
| TCGAGGCATTGAATACATTG+AGG | 0.634411 | 3_1:+44325346 | Msa0358770:CDS |
| CAGGTATCATTACAGTCGAG+GGG | 0.643753 | 3_1:-44325521 | None:intergenic |
| TTCCCTTCGGCTGATCGGGG+CGG | 0.644020 | 3_1:-44325024 | None:intergenic |
| GAGTGGGGAACACCTAGAGG+AGG | 0.656225 | 3_1:+44325137 | Msa0358770:CDS |
| CATACCTTTGAATTCGTCTG+CGG | 0.656627 | 3_1:+44325167 | Msa0358770:CDS |
| AAATCGGTTGAAACTGCTGG+AGG | 0.679706 | 3_1:+44325482 | Msa0358770:CDS |
| AAAGAGTGGGGAACACCTAG+AGG | 0.683816 | 3_1:+44325134 | Msa0358770:CDS |
| AGTTGAACAAGCCCTCACCA+TGG | 0.691356 | 3_1:+44325563 | Msa0358770:CDS |
| TGATGGGGATAAGGTCATCG+AGG | 0.725311 | 3_1:+44325329 | Msa0358770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTTTTTTTT+TGG | - | chr3_1:44323815-44323834 | None:intergenic | 0.0% |
| !!! | TTCAATTTTTTACTTAATTT+AGG | + | chr3_1:44323637-44323656 | Msa0358770:intron | 10.0% |
| !!! | TCAATTTTTTACTTAATTTA+GGG | + | chr3_1:44323638-44323657 | Msa0358770:intron | 10.0% |
| !! | AAAAAATAAAAAAAAACATG+TGG | + | chr3_1:44323821-44323840 | Msa0358770:intron | 10.0% |
| !!! | AAGTTATTATTTTAGTTTTA+TGG | + | chr3_1:44324752-44324771 | Msa0358770:intron | 10.0% |
| !!! | TTTTGTAGTTTTTTTTTCTT+AGG | + | chr3_1:44323933-44323952 | Msa0358770:intron | 15.0% |
| !! | TATTAAGCCTTAATTATTTA+GGG | + | chr3_1:44323999-44324018 | Msa0358770:intron | 15.0% |
| !!! | AAAAAAAGAAAGTGTTTAAT+TGG | + | chr3_1:44324054-44324073 | Msa0358770:intron | 15.0% |
| !!! | AAAAAAGAAAGTGTTTAATT+GGG | + | chr3_1:44324055-44324074 | Msa0358770:intron | 15.0% |
| !! | ATAACTTCACAATAATAATA+AGG | - | chr3_1:44324739-44324758 | None:intergenic | 15.0% |
| !! | AAGAAGAAAAGAATAAGAAT+CGG | - | chr3_1:44323545-44323564 | None:intergenic | 20.0% |
| !!! | TTCTTATTCTTTTCTTCTTT+CGG | + | chr3_1:44323546-44323565 | Msa0358770:intron | 20.0% |
| !!! | AATTTAGGGTTTATGAATAT+AGG | + | chr3_1:44323652-44323671 | Msa0358770:intron | 20.0% |
| !!! | ATTTAGGGTTTATGAATATA+GGG | + | chr3_1:44323653-44323672 | Msa0358770:intron | 20.0% |
| !!! | TATTTTTTTTTTTTTGGCCT+GGG | - | chr3_1:44323809-44323828 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTTTTTTTGGCC+TGG | - | chr3_1:44323810-44323829 | None:intergenic | 20.0% |
| !! | CTATTAAGCCTTAATTATTT+AGG | + | chr3_1:44323998-44324017 | Msa0358770:intron | 20.0% |
| !!! | AGCATATTTTTAAAAGATCA+TGG | + | chr3_1:44324574-44324593 | Msa0358770:intron | 20.0% |
| !!! | GCATATTTTTAAAAGATCAT+GGG | + | chr3_1:44324575-44324594 | Msa0358770:intron | 20.0% |
| !!! | AAATTTTTTGAGCTTATTGA+TGG | + | chr3_1:44325312-44325331 | Msa0358770:CDS | 20.0% |
| !!! | AATTTTTTGAGCTTATTGAT+GGG | + | chr3_1:44325313-44325332 | Msa0358770:CDS | 20.0% |
| !! | TGGTATAGATATGTGTTTTA+CGG | - | chr3_1:44323347-44323366 | None:intergenic | 25.0% |
| ! | GTTTATGAATATAGGGTTTA+GGG | + | chr3_1:44323660-44323679 | Msa0358770:intron | 25.0% |
| ! | GCTTAATCCCTAAATAATTA+AGG | - | chr3_1:44324009-44324028 | None:intergenic | 25.0% |
| !! | AGTTTACATGTGTAATTTGT+TGG | + | chr3_1:44324433-44324452 | Msa0358770:intron | 25.0% |
| ! | AAAATATAACACTGTTAGAC+TGG | - | chr3_1:44324606-44324625 | None:intergenic | 25.0% |
| !! | TCTAACAGTGTTATATTTTG+AGG | + | chr3_1:44324607-44324626 | Msa0358770:intron | 25.0% |
| !!! | CTAACAGTGTTATATTTTGA+GGG | + | chr3_1:44324608-44324627 | Msa0358770:intron | 25.0% |
| ! | TTTGGTCATTAAAAAACTAG+AGG | + | chr3_1:44324670-44324689 | Msa0358770:intron | 25.0% |
| ! | TTGGTCATTAAAAAACTAGA+GGG | + | chr3_1:44324671-44324690 | Msa0358770:intron | 25.0% |
| !!! | AGCATTTTGAAACACATATT+TGG | - | chr3_1:44324782-44324801 | None:intergenic | 25.0% |
| ! | TCATGTAGAAATTTGTATCT+AGG | + | chr3_1:44324856-44324875 | Msa0358770:intron | 25.0% |
| !! | TGTTGTTGGTTATTATTTCA+TGG | + | chr3_1:44324897-44324916 | Msa0358770:exon | 25.0% |
| !! | GTTGTTGGTTATTATTTCAT+GGG | + | chr3_1:44324898-44324917 | Msa0358770:exon | 25.0% |
| !! | TATACCAATTTGTTTCAATG+TGG | - | chr3_1:44325244-44325263 | None:intergenic | 25.0% |
| !!! | ATTTTTTGAGCTTATTGATG+GGG | + | chr3_1:44325314-44325333 | Msa0358770:CDS | 25.0% |
| !! | ATTTTGTAAGGGCAAAAAAT+CGG | + | chr3_1:44325466-44325485 | Msa0358770:CDS | 25.0% |
| ! | GGTATAGATATGTGTTTTAC+GGG | - | chr3_1:44323346-44323365 | None:intergenic | 30.0% |
| CAGAGAAAGAAAAGAGAAAT+CGG | + | chr3_1:44323399-44323418 | Msa0358770:five_prime_UTR | 30.0% | |
| AAAATGATCAAACGACTTAC+CGG | - | chr3_1:44323501-44323520 | None:intergenic | 30.0% | |
| ! | TTTGATCATTTTCACTTCCT+AGG | + | chr3_1:44323509-44323528 | Msa0358770:intron | 30.0% |
| TTAATGCTAAGTTCTTGCTT+TGG | + | chr3_1:44323596-44323615 | Msa0358770:intron | 30.0% | |
| GGTTTATGAATATAGGGTTT+AGG | + | chr3_1:44323659-44323678 | Msa0358770:intron | 30.0% | |
| ! | AGGGTTTAGGGATTAATTTT+TGG | + | chr3_1:44323672-44323691 | Msa0358770:intron | 30.0% |
| !! | TTTGGCTTAATAGCAGTTTT+CGG | + | chr3_1:44323690-44323709 | Msa0358770:intron | 30.0% |
| AATGCTTTCAATTATGCAGA+CGG | - | chr3_1:44324310-44324329 | None:intergenic | 30.0% | |
| TCGGTAATTATAAACTCAGA+TGG | + | chr3_1:44324395-44324414 | Msa0358770:intron | 30.0% | |
| TTACACATGTAAACTCACAT+TGG | - | chr3_1:44324428-44324447 | None:intergenic | 30.0% | |
| ! | TAGCAATTAAGCAAGGTTTT+TGG | + | chr3_1:44324652-44324671 | Msa0358770:intron | 30.0% |
| TGGTCATTAAAAAACTAGAG+GGG | + | chr3_1:44324672-44324691 | Msa0358770:intron | 30.0% | |
| GTCTTTGTAAAGAGAACATA+CGG | + | chr3_1:44324695-44324714 | Msa0358770:intron | 30.0% | |
| TCTTTGTAAAGAGAACATAC+GGG | + | chr3_1:44324696-44324715 | Msa0358770:intron | 30.0% | |
| ! | AATTTCGTTCTTTTCAAAGC+TGG | - | chr3_1:44324943-44324962 | None:intergenic | 30.0% |
| ACCTAATAGTTCATCTTCTA+TGG | + | chr3_1:44324966-44324985 | Msa0358770:CDS | 30.0% | |
| TCCATAGAAGATGAACTATT+AGG | - | chr3_1:44324970-44324989 | None:intergenic | 30.0% | |
| AAAAGGGAGCTTAAAAAGAA+GGG | + | chr3_1:44325065-44325084 | Msa0358770:CDS | 30.0% | |
| TAAAAAGAAGGGAGTTTGTA+AGG | + | chr3_1:44325076-44325095 | Msa0358770:CDS | 30.0% | |
| ! | AGATGTTCTAATCTCTTTTC+AGG | - | chr3_1:44325543-44325562 | None:intergenic | 30.0% |
| GAAGTATAAGCTTGATTAGT+AGG | - | chr3_1:44325669-44325688 | None:intergenic | 30.0% | |
| ! | TGTTTCTGATGATAACGAAT+CGG | + | chr3_1:44325692-44325711 | Msa0358770:CDS | 30.0% |
| !! | AGAAAAGAGAAATCGGTTTG+AGG | + | chr3_1:44323406-44323425 | Msa0358770:five_prime_UTR | 35.0% |
| !! | GAAAAGAGAAATCGGTTTGA+GGG | + | chr3_1:44323407-44323426 | Msa0358770:five_prime_UTR | 35.0% |
| ! | TTTGGATTGTTGTTGTTCAC+TGG | + | chr3_1:44323614-44323633 | Msa0358770:intron | 35.0% |
| TATTGACCAAAATCGCAACT+TGG | - | chr3_1:44323729-44323748 | None:intergenic | 35.0% | |
| TGCTACAGTTGCAAAACTTA+GGG | - | chr3_1:44323779-44323798 | None:intergenic | 35.0% | |
| ! | TTTTGCAACTGTAGCAGTTT+TGG | + | chr3_1:44323783-44323802 | Msa0358770:intron | 35.0% |
| TAGCACGCTTGTAAAATTGT+TGG | + | chr3_1:44324029-44324048 | Msa0358770:intron | 35.0% | |
| AGCACGCTTGTAAAATTGTT+GGG | + | chr3_1:44324030-44324049 | Msa0358770:intron | 35.0% | |
| AACAAGATTCAATGTTGCGT+CGG | + | chr3_1:44324376-44324395 | Msa0358770:intron | 35.0% | |
| CAAAAGTGAAGCTTAAGTCA+GGG | - | chr3_1:44324532-44324551 | None:intergenic | 35.0% | |
| TCAAAAGTGAAGCTTAAGTC+AGG | - | chr3_1:44324533-44324552 | None:intergenic | 35.0% | |
| !! | TAAGCTTCACTTTTGAACCT+TGG | + | chr3_1:44324537-44324556 | Msa0358770:intron | 35.0% |
| !! | ACAGTGTTATATTTTGAGGG+AGG | + | chr3_1:44324611-44324630 | Msa0358770:intron | 35.0% |
| CTTAGTCTAGCAATTAAGCA+AGG | + | chr3_1:44324645-44324664 | Msa0358770:intron | 35.0% | |
| GGTCATTAAAAAACTAGAGG+GGG | + | chr3_1:44324673-44324692 | Msa0358770:intron | 35.0% | |
| ATTTGTATCTAGGCAGTCTT+TGG | + | chr3_1:44324866-44324885 | Msa0358770:intron | 35.0% | |
| GTTGGTTATTATTTCATGGG+AGG | + | chr3_1:44324901-44324920 | Msa0358770:exon | 35.0% | |
| TTATTATTTCATGGGAGGTG+TGG | + | chr3_1:44324906-44324925 | Msa0358770:exon | 35.0% | |
| CAAAAGGGAGCTTAAAAAGA+AGG | + | chr3_1:44325064-44325083 | Msa0358770:CDS | 35.0% | |
| TCTCTTGGTTACAAAAAGAG+TGG | + | chr3_1:44325120-44325139 | Msa0358770:CDS | 35.0% | |
| CTCTTGGTTACAAAAAGAGT+GGG | + | chr3_1:44325121-44325140 | Msa0358770:CDS | 35.0% | |
| TCTTGGTTACAAAAAGAGTG+GGG | + | chr3_1:44325122-44325141 | Msa0358770:CDS | 35.0% | |
| CTAGCCACATTGAAACAAAT+TGG | + | chr3_1:44325237-44325256 | Msa0358770:CDS | 35.0% | |
| !! | AGAAGATGAAAGCATCGTTA+AGG | + | chr3_1:44325263-44325282 | Msa0358770:CDS | 35.0% |
| CTGCTCCAATATTAAAAGTG+AGG | - | chr3_1:44325292-44325311 | None:intergenic | 35.0% | |
| AAAAAATCGGTTGAAACTGC+TGG | + | chr3_1:44325479-44325498 | Msa0358770:CDS | 35.0% | |
| AAATCTTCCAAAATCAGCTC+TGG | - | chr3_1:44325727-44325746 | None:intergenic | 35.0% | |
| ATTTGTCAGTACTGCTGAAA+GGG | + | chr3_1:44325743-44325762 | Msa0358770:CDS | 35.0% | |
| GAATAAGAATCGGAAACTGC+AGG | - | chr3_1:44323535-44323554 | None:intergenic | 40.0% | |
| ! | ATCGCAACTTGGTGAAAGTT+AGG | - | chr3_1:44323718-44323737 | None:intergenic | 40.0% |
| ! | CTTTCACCAAGTTGCGATTT+TGG | + | chr3_1:44323720-44323739 | Msa0358770:intron | 40.0% |
| GCTACAGTTGCAAAACTTAG+GGG | - | chr3_1:44323778-44323797 | None:intergenic | 40.0% | |
| CTGCTACAGTTGCAAAACTT+AGG | - | chr3_1:44323780-44323799 | None:intergenic | 40.0% | |
| AGACCGAGTCAAAATTGGTT+TGG | + | chr3_1:44323872-44323891 | Msa0358770:intron | 40.0% | |
| ! | GACCGAGTCAAAATTGGTTT+GGG | + | chr3_1:44323873-44323892 | Msa0358770:intron | 40.0% |
| !! | ACCGAGTCAAAATTGGTTTG+GGG | + | chr3_1:44323874-44323893 | Msa0358770:intron | 40.0% |
| !!! | TCCCCAAACCAATTTTGACT+CGG | - | chr3_1:44323878-44323897 | None:intergenic | 40.0% |
| ! | TTTTGCACATGTGGCAGTTT+TGG | - | chr3_1:44323901-44323920 | None:intergenic | 40.0% |
| TGCCACATGTGCAAAACTTA+AGG | + | chr3_1:44323905-44323924 | Msa0358770:intron | 40.0% | |
| GCCACATGTGCAAAACTTAA+GGG | + | chr3_1:44323906-44323925 | Msa0358770:intron | 40.0% | |
| CCACATGTGCAAAACTTAAG+GGG | + | chr3_1:44323907-44323926 | Msa0358770:intron | 40.0% | |
| ! | CTTTCCCAAAGTTGCGATTT+TGG | - | chr3_1:44323961-44323980 | None:intergenic | 40.0% |
| ! | TCGCAACTTTGGGAAAGTTA+AGG | + | chr3_1:44323964-44323983 | Msa0358770:intron | 40.0% |
| ! | CGCAACTTTGGGAAAGTTAA+GGG | + | chr3_1:44323965-44323984 | Msa0358770:intron | 40.0% |
| ! | GCAACTTTGGGAAAGTTAAG+GGG | + | chr3_1:44323966-44323985 | Msa0358770:intron | 40.0% |
| GCACGCTTGTAAAATTGTTG+GGG | + | chr3_1:44324031-44324050 | Msa0358770:intron | 40.0% | |
| ! | ACTCTGTCCGTCTTTTATGA+AGG | + | chr3_1:44324503-44324522 | Msa0358770:intron | 40.0% |
| !! | CTTCACTTTTGAACCTTGGT+AGG | + | chr3_1:44324541-44324560 | Msa0358770:intron | 40.0% |
| TTGTAAAGAGAACATACGGG+AGG | + | chr3_1:44324699-44324718 | Msa0358770:intron | 40.0% | |
| !!! | CTTTGGAGGCATTTTGTTGT+TGG | + | chr3_1:44324883-44324902 | Msa0358770:five_prime_UTR | 40.0% |
| ACGAAGTTGTTGGCACAAAA+GGG | + | chr3_1:44325049-44325068 | Msa0358770:CDS | 40.0% | |
| ACCAAAGCGATGTATTCTCT+TGG | + | chr3_1:44325105-44325124 | Msa0358770:CDS | 40.0% | |
| ACCAAGAGAATACATCGCTT+TGG | - | chr3_1:44325109-44325128 | None:intergenic | 40.0% | |
| CATACCTTTGAATTCGTCTG+CGG | + | chr3_1:44325167-44325186 | Msa0358770:CDS | 40.0% | |
| TTTACCGCAGACGAATTCAA+AGG | - | chr3_1:44325174-44325193 | None:intergenic | 40.0% | |
| CTGTTTATGCAGCAAGTACT+TGG | + | chr3_1:44325195-44325214 | Msa0358770:CDS | 40.0% | |
| TTTATGCAGCAAGTACTTGG+CGG | + | chr3_1:44325198-44325217 | Msa0358770:CDS | 40.0% | |
| !! | GGCTGCCTCACTTTTAATAT+TGG | + | chr3_1:44325284-44325303 | Msa0358770:CDS | 40.0% |
| TGAGCTTATTGATGGGGATA+AGG | + | chr3_1:44325320-44325339 | Msa0358770:CDS | 40.0% | |
| !! | TCGAGGCATTGAATACATTG+AGG | + | chr3_1:44325346-44325365 | Msa0358770:CDS | 40.0% |
| TCAGGTATCATTACAGTCGA+GGG | - | chr3_1:44325525-44325544 | None:intergenic | 40.0% | |
| TTCAGGTATCATTACAGTCG+AGG | - | chr3_1:44325526-44325545 | None:intergenic | 40.0% | |
| TCGTCATGTTCAGATGACTT+TGG | + | chr3_1:44325630-44325649 | Msa0358770:CDS | 40.0% | |
| !! | AACTTGTCCAGAGCTGATTT+TGG | + | chr3_1:44325717-44325736 | Msa0358770:CDS | 40.0% |
| GATTTGTCAGTACTGCTGAA+AGG | + | chr3_1:44325742-44325761 | Msa0358770:CDS | 40.0% | |
| GCACTTACCAAAGCAGAAGA+AGG | - | chr3_1:44323378-44323397 | None:intergenic | 45.0% | |
| ! | AAAAGCGATCTGAAGTTCGC+CGG | - | chr3_1:44323469-44323488 | None:intergenic | 45.0% |
| !! | GATCGCTTTTCTTGCTTCTC+CGG | + | chr3_1:44323479-44323498 | Msa0358770:five_prime_UTR | 45.0% |
| ACAGTTGCAAAACTTAGGGG+CGG | - | chr3_1:44323775-44323794 | None:intergenic | 45.0% | |
| AAACATGTGGCACCTCACTT+AGG | + | chr3_1:44323834-44323853 | Msa0358770:intron | 45.0% | |
| AACATGTGGCACCTCACTTA+GGG | + | chr3_1:44323835-44323854 | Msa0358770:intron | 45.0% | |
| AGCGTAGACCGAGTCAAAAT+TGG | + | chr3_1:44323867-44323886 | Msa0358770:intron | 45.0% | |
| ! | CCCCTTAAGTTTTGCACATG+TGG | - | chr3_1:44323910-44323929 | None:intergenic | 45.0% |
| CATGTGCAAAACTTAAGGGG+TGG | + | chr3_1:44323910-44323929 | Msa0358770:intron | 45.0% | |
| AGGAGCCAAAATCGCAACTT+TGG | + | chr3_1:44323953-44323972 | Msa0358770:intron | 45.0% | |
| GGAGCCAAAATCGCAACTTT+GGG | + | chr3_1:44323954-44323973 | Msa0358770:intron | 45.0% | |
| ! | AGGGCGTCCTTCATAAAAGA+CGG | - | chr3_1:44324513-44324532 | None:intergenic | 45.0% |
| GCTAGCATATCTTCCTACCA+AGG | - | chr3_1:44324557-44324576 | None:intergenic | 45.0% | |
| TAAAGAGAACATACGGGAGG+TGG | + | chr3_1:44324702-44324721 | Msa0358770:intron | 45.0% | |
| TGTATCTAGGCAGTCTTTGG+AGG | + | chr3_1:44324869-44324888 | Msa0358770:intron | 45.0% | |
| TCTTCTATGGAGCACGTTGT+AGG | + | chr3_1:44324979-44324998 | Msa0358770:CDS | 45.0% | |
| AGGCTCAACAAGTGACTTGA+TGG | + | chr3_1:44324999-44325018 | Msa0358770:CDS | 45.0% | |
| AACAACTTCGTCGTTCCCTT+CGG | - | chr3_1:44325040-44325059 | None:intergenic | 45.0% | |
| GACGAAGTTGTTGGCACAAA+AGG | + | chr3_1:44325048-44325067 | Msa0358770:CDS | 45.0% | |
| ! | TTCCGGGCGAGATTTTGTAA+GGG | + | chr3_1:44325455-44325474 | Msa0358770:CDS | 45.0% |
| AAATCGGTTGAAACTGCTGG+AGG | + | chr3_1:44325482-44325501 | Msa0358770:CDS | 45.0% | |
| CAGGTATCATTACAGTCGAG+GGG | - | chr3_1:44325524-44325543 | None:intergenic | 45.0% | |
| AGCAGAAGAAGGCGATTGGA+TGG | - | chr3_1:44323367-44323386 | None:intergenic | 50.0% | |
| CCAAAGCAGAAGAAGGCGAT+TGG | - | chr3_1:44323371-44323390 | None:intergenic | 50.0% | |
| CCAATCGCCTTCTTCTGCTT+TGG | + | chr3_1:44323368-44323387 | Msa0358770:five_prime_UTR | 50.0% | |
| CCATATCACCGATCGCTCAT+CGG | + | chr3_1:44323440-44323459 | Msa0358770:five_prime_UTR | 50.0% | |
| !! | AACTGTAGCAGTTTTGGCCC+AGG | + | chr3_1:44323789-44323808 | Msa0358770:intron | 50.0% |
| ! | TTGTGCCACTCACTGCAACA+CGG | - | chr3_1:44324153-44324172 | None:intergenic | 50.0% |
| GAAGGGAACGACGAAGTTGT+TGG | + | chr3_1:44325039-44325058 | Msa0358770:CDS | 50.0% | |
| AAAGAGTGGGGAACACCTAG+AGG | + | chr3_1:44325134-44325153 | Msa0358770:CDS | 50.0% | |
| AGCAAGTACTTGGCGGTGAT+TGG | + | chr3_1:44325205-44325224 | Msa0358770:CDS | 50.0% | |
| GCAAGTACTTGGCGGTGATT+GGG | + | chr3_1:44325206-44325225 | Msa0358770:CDS | 50.0% | |
| TGATGGGGATAAGGTCATCG+AGG | + | chr3_1:44325329-44325348 | Msa0358770:CDS | 50.0% | |
| ! | CTTCCGGGCGAGATTTTGTA+AGG | + | chr3_1:44325454-44325473 | Msa0358770:CDS | 50.0% |
| TGCCCTTACAAAATCTCGCC+CGG | - | chr3_1:44325460-44325479 | None:intergenic | 50.0% | |
| AGTTGAACAAGCCCTCACCA+TGG | + | chr3_1:44325563-44325582 | Msa0358770:CDS | 50.0% | |
| AGCTACTCGTTCCATGGTGA+GGG | - | chr3_1:44325577-44325596 | None:intergenic | 50.0% | |
| AAGCTACTCGTTCCATGGTG+AGG | - | chr3_1:44325578-44325597 | None:intergenic | 50.0% | |
| CAAGGAAGCTACTCGTTCCA+TGG | - | chr3_1:44325583-44325602 | None:intergenic | 50.0% | |
| TGTCAGTACTGCTGAAAGGG+TGG | + | chr3_1:44325746-44325765 | Msa0358770:CDS | 50.0% | |
| CCGATGAGCGATCGGTGATA+TGG | - | chr3_1:44323443-44323462 | None:intergenic | 55.0% | |
| ACCGATCGCTCATCGGAATC+CGG | + | chr3_1:44323447-44323466 | Msa0358770:five_prime_UTR | 55.0% | |
| GAATCGGAAACTGCAGGCCT+AGG | - | chr3_1:44323529-44323548 | None:intergenic | 55.0% | |
| CTGACGTAGCACCCTAAGTG+AGG | - | chr3_1:44323849-44323868 | None:intergenic | 55.0% | |
| GCAACACGGAACTGCGAAGT+CGG | - | chr3_1:44324139-44324158 | None:intergenic | 55.0% | |
| CAGTTCCGTGTTGCAGTGAG+TGG | + | chr3_1:44324145-44324164 | Msa0358770:intron | 55.0% | |
| GAACACCTAGAGGAGGAGTC+TGG | + | chr3_1:44325144-44325163 | Msa0358770:CDS | 55.0% | |
| GTATGCCAGACTCCTCCTCT+AGG | - | chr3_1:44325152-44325171 | None:intergenic | 55.0% | |
| TCCTGCTTCATGTCACCCTC+TGG | + | chr3_1:44325420-44325439 | Msa0358770:CDS | 55.0% | |
| TTCATGTCACCCTCTGGCCA+AGG | + | chr3_1:44325426-44325445 | Msa0358770:CDS | 55.0% | |
| GAAGAACCACCTTGGCCAGA+GGG | - | chr3_1:44325438-44325457 | None:intergenic | 55.0% | |
| TCTGGCCAAGGTGGTTCTTC+CGG | + | chr3_1:44325438-44325457 | Msa0358770:CDS | 55.0% | |
| TTCCTTGTGTCGCAACGCGT+TGG | + | chr3_1:44325596-44325615 | Msa0358770:CDS | 55.0% | |
| ATCCAACGCGTTGCGACACA+AGG | - | chr3_1:44325601-44325620 | None:intergenic | 55.0% | |
| GAGGAGGAGGGGTTCGAAAT+AGG | - | chr3_1:44325827-44325846 | None:intergenic | 55.0% | |
| GCCGGATTCCGATGAGCGAT+CGG | - | chr3_1:44323451-44323470 | None:intergenic | 60.0% | |
| TCGTTCCCTTCGGCTGATCG+GGG | - | chr3_1:44325030-44325049 | None:intergenic | 60.0% | |
| GTCGTTCCCTTCGGCTGATC+GGG | - | chr3_1:44325031-44325050 | None:intergenic | 60.0% | |
| CGTCGTTCCCTTCGGCTGAT+CGG | - | chr3_1:44325032-44325051 | None:intergenic | 60.0% | |
| GAGTGGGGAACACCTAGAGG+AGG | + | chr3_1:44325137-44325156 | Msa0358770:CDS | 60.0% | |
| GCCAGAGGGTGACATGAAGC+AGG | - | chr3_1:44325424-44325443 | None:intergenic | 60.0% | |
| ATGTCACCCTCTGGCCAAGG+TGG | + | chr3_1:44325429-44325448 | Msa0358770:CDS | 60.0% | |
| GGAAGAACCACCTTGGCCAG+AGG | - | chr3_1:44325439-44325458 | None:intergenic | 60.0% | |
| CTGGCCAAGGTGGTTCTTCC+GGG | + | chr3_1:44325439-44325458 | Msa0358770:CDS | 60.0% | |
| TTCCCTTCGGCTGATCGGGG+CGG | - | chr3_1:44325027-44325046 | None:intergenic | 65.0% | |
| CTCGCCCGGAAGAACCACCT+TGG | - | chr3_1:44325446-44325465 | None:intergenic | 65.0% | |
| CTCCGCCCCGATCAGCCGAA+GGG | + | chr3_1:44325022-44325041 | Msa0358770:CDS | 70.0% | |
| GCTCCGCCCCGATCAGCCGA+AGG | + | chr3_1:44325021-44325040 | Msa0358770:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 44323329 | 44325848 | 44323329 | ID=Msa0358770;Name=Msa0358770 |
| chr3_1 | mRNA | 44323329 | 44325848 | 44323329 | ID=Msa0358770-mRNA-1;Parent=Msa0358770;Name=Msa0358770-mRNA-1;_AED=0.12;_eAED=0.15;_QI=210|0|0.5|1|0|0|2|0|311 |
| chr3_1 | exon | 44323329 | 44323500 | 44323329 | ID=Msa0358770-mRNA-1:exon:7854;Parent=Msa0358770-mRNA-1 |
| chr3_1 | exon | 44324878 | 44325848 | 44324878 | ID=Msa0358770-mRNA-1:exon:7855;Parent=Msa0358770-mRNA-1 |
| chr3_1 | five_prime_UTR | 44323329 | 44323500 | 44323329 | ID=Msa0358770-mRNA-1:five_prime_utr;Parent=Msa0358770-mRNA-1 |
| chr3_1 | five_prime_UTR | 44324878 | 44324915 | 44324878 | ID=Msa0358770-mRNA-1:five_prime_utr;Parent=Msa0358770-mRNA-1 |
| chr3_1 | CDS | 44324916 | 44325848 | 44324916 | ID=Msa0358770-mRNA-1:cds;Parent=Msa0358770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
