AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027890 MtrunA17_Chr1g0184301 83.465 127 1 1 1 107 1 127 1.98e-62 186
Msa0027890 MtrunA17_Chr1g0168091 50.000 112 32 2 16 107 18 125 6.15e-29 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027890 AT3G58170.1 62.698 126 23 2 2 107 1 122 2.38e-47 148
Msa0027890 AT4G14455.1 47.287 129 39 3 2 107 1 123 5.22e-32 109

Find 40 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGCAACTCTGTTGTTTC+GGG 0.248402 1_1:-52522494 None:intergenic
GTGCATAAGTAAAGGTTCTT+TGG 0.278035 1_1:-52521059 None:intergenic
TTATTATCTAACTAGGTAAT+TGG 0.282291 1_1:+52524192 Msa0027890:exon
AAAGAGCAACTCTGTTGTTT+CGG 0.302142 1_1:-52522495 None:intergenic
CAATGGATGGATTGCAAGAT+AGG 0.310657 1_1:+52522608 Msa0027890:CDS
TATCATGCTCATCAATTTCA+TGG 0.334184 1_1:-52522576 None:intergenic
GCATGCTTCATCCTTCAGTT+TGG 0.357420 1_1:+52524357 Msa0027890:three_prime_UTR
GAAGGATGAAGCATGCATAA+AGG 0.391954 1_1:-52524350 None:intergenic
TTACTTATGCACAGAACAAC+AGG 0.419198 1_1:+52521070 Msa0027890:five_prime_UTR
TAACCGCATGCTGGATCATA+TGG 0.436740 1_1:+52523550 Msa0027890:CDS
AAGGATGAAGCATGCATAAA+GGG 0.441495 1_1:-52524349 None:intergenic
GATCGAGTGAATCCGTGATC+TGG 0.450210 1_1:+52521222 Msa0027890:five_prime_UTR
TTATCATTTATTATCTAACT+AGG 0.454715 1_1:+52524185 Msa0027890:CDS
GAGATATGATGAATTCTAGA+AGG 0.474589 1_1:+52521255 Msa0027890:exon
CTACCAGTGAGAACATTCTT+CGG 0.488488 1_1:-52524141 None:intergenic
GTCTGTTTGCAACAGCTGTC+AGG 0.490064 1_1:+52523500 Msa0027890:intron
GTTGTTCTGTGCATAAGTAA+AGG 0.505706 1_1:-52521067 None:intergenic
AGTGGAGGAGAGATAGAAAG+AGG 0.525026 1_1:-52521036 None:intergenic
GGATAATCATAACCGCATGC+TGG 0.533691 1_1:+52523541 Msa0027890:CDS
TTTGATGGTATTGAGGAGGG+TGG 0.537955 1_1:+52522517 Msa0027890:CDS
GTAAAGGTTCTTTGGAGTGG+AGG 0.539391 1_1:-52521051 None:intergenic
GATAATGAACAAGCAATGGA+TGG 0.545746 1_1:+52522595 Msa0027890:CDS
CAATGAATGATAAGAACACT+TGG 0.549968 1_1:+52524425 Msa0027890:three_prime_UTR
ATCATGCTCATCAATTTCAT+GGG 0.551837 1_1:-52522575 None:intergenic
TAAGTAAAGGTTCTTTGGAG+TGG 0.553172 1_1:-52521054 None:intergenic
ATGAAAGCTTTCCAAACTGA+AGG 0.557022 1_1:-52524368 None:intergenic
AGGTGATATACATGAGGAGG+TGG 0.560404 1_1:+52523520 Msa0027890:CDS
AATGGATGGATTGCAAGATA+GGG 0.574154 1_1:+52522609 Msa0027890:CDS
CGAGTGAATCCGTGATCTGG+TGG 0.588577 1_1:+52521225 Msa0027890:five_prime_UTR
AATCCGTGATCTGGTGGTGG+TGG 0.598793 1_1:+52521231 Msa0027890:five_prime_UTR
GCTTGATGTTGAATCTGAGA+AGG 0.598861 1_1:+52524229 Msa0027890:three_prime_UTR
GCATGATAATGAACAAGCAA+TGG 0.600126 1_1:+52522591 Msa0027890:CDS
GAGCCGAAGAATGTTCTCAC+TGG 0.607304 1_1:+52524138 Msa0027890:CDS
GTGAATCCGTGATCTGGTGG+TGG 0.622641 1_1:+52521228 Msa0027890:five_prime_UTR
TCACCACCACCACCAGATCA+CGG 0.632812 1_1:-52521234 None:intergenic
AATTTCATGGGAAGAAGCTG+AGG 0.635387 1_1:-52522563 None:intergenic
ATCTTTATACAGACACACAA+CGG 0.649000 1_1:-52524299 None:intergenic
GTCAGGTGATATACATGAGG+AGG 0.657694 1_1:+52523517 Msa0027890:CDS
GCTGTCAGGTGATATACATG+AGG 0.690650 1_1:+52523514 Msa0027890:intron
ACACCATATGATCCAGCATG+CGG 0.718029 1_1:-52523553 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATTAATTAATTAATGAA+TGG - chr1_1:52521171-52521190 None:intergenic 10.0%
!! TGTAATTAATAATCAATAAT+AGG + chr1_1:52521996-52522015 Msa0027890:intron 10.0%
!! ATAGATATTATAATTATAGT+AGG - chr1_1:52523325-52523344 None:intergenic 10.0%
!! CTATAATTATAATATCTATT+TGG + chr1_1:52523326-52523345 Msa0027890:intron 10.0%
!! AATAACAGATTAATTAGAAA+AGG - chr1_1:52521316-52521335 None:intergenic 15.0%
!! TTATCATTTATTATCTAACT+AGG + chr1_1:52524185-52524204 Msa0027890:CDS 15.0%
!!! TAATCTGTTATTTCATATTC+TGG + chr1_1:52521324-52521343 Msa0027890:intron 20.0%
!!! TTTTGATATGTGTGATTTAT+TGG + chr1_1:52521466-52521485 Msa0027890:intron 20.0%
!! TTTAAATACAAGTTGTATCT+TGG - chr1_1:52521856-52521875 None:intergenic 20.0%
!! CAACTTGTATTTAAATACTA+TGG + chr1_1:52521861-52521880 Msa0027890:intron 20.0%
!! AACAAAAATGAATAGAGAAA+AGG + chr1_1:52521926-52521945 Msa0027890:intron 20.0%
!!! CTTGATATTTTATGCAATTA+TGG + chr1_1:52522333-52522352 Msa0027890:intron 20.0%
!! GAAACAATATCATATAAACA+AGG - chr1_1:52522802-52522821 None:intergenic 20.0%
!!! TTATATGATATTGTTTCTGT+TGG + chr1_1:52522805-52522824 Msa0027890:intron 20.0%
!!! TATATGATATTGTTTCTGTT+GGG + chr1_1:52522806-52522825 Msa0027890:intron 20.0%
!! ATTCAGAAATATTGTTAGAA+AGG + chr1_1:52523054-52523073 Msa0027890:intron 20.0%
!! AAATATTGTTAGAAAGGATT+AGG + chr1_1:52523060-52523079 Msa0027890:intron 20.0%
!! AGTGTATTATTGAATGTAAA+TGG - chr1_1:52523173-52523192 None:intergenic 20.0%
!! TAAATAGTCTACAGAAAAAA+GGG - chr1_1:52523361-52523380 None:intergenic 20.0%
!! TTAAATAGTCTACAGAAAAA+AGG - chr1_1:52523362-52523381 None:intergenic 20.0%
!! AGTATCTAAGAAAAACTAAT+TGG - chr1_1:52523985-52524004 None:intergenic 20.0%
!! ATTAAATATTTGAACTTGAG+AGG - chr1_1:52524079-52524098 None:intergenic 20.0%
!! TTATTATCTAACTAGGTAAT+TGG + chr1_1:52524192-52524211 Msa0027890:exon 20.0%
!!! TTGAGGTTTTGTTTTCATTT+TGG + chr1_1:52521500-52521519 Msa0027890:intron 25.0%
!!! GTTTTGTTTTCATTTTGGAA+TGG + chr1_1:52521505-52521524 Msa0027890:intron 25.0%
! ACAAATTTGTCACAAATATG+AGG + chr1_1:52522096-52522115 Msa0027890:intron 25.0%
! TCAAATAAACCTTAATGACA+TGG - chr1_1:52522235-52522254 None:intergenic 25.0%
! ATTAATCAGAGAGATATCTT+AGG - chr1_1:52522309-52522328 None:intergenic 25.0%
! GAAAATAGTAAAATCCAATG+TGG - chr1_1:52522440-52522459 None:intergenic 25.0%
!!! TCGTTTTTGGTTTATTAGAA+TGG + chr1_1:52522860-52522879 Msa0027890:intron 25.0%
! ATAGTACAGAATAAGATCAT+GGG - chr1_1:52523278-52523297 None:intergenic 25.0%
! AATAGTACAGAATAAGATCA+TGG - chr1_1:52523279-52523298 None:intergenic 25.0%
! AACTATGGACAAATTCAAAA+TGG + chr1_1:52523699-52523718 Msa0027890:intron 25.0%
!!! ATGTTTATATGACGGATTTT+TGG + chr1_1:52523862-52523881 Msa0027890:intron 25.0%
! GATAAGAAAAATCACAACAA+AGG - chr1_1:52524170-52524189 None:intergenic 25.0%
ACAGATCTGAAGAAATGAAA+CGG - chr1_1:52521115-52521134 None:intergenic 30.0%
GAGATATGATGAATTCTAGA+AGG + chr1_1:52521255-52521274 Msa0027890:exon 30.0%
! TGAATTCTAGAAGGTTAGTA+AGG + chr1_1:52521264-52521283 Msa0027890:intron 30.0%
TATTGGTGAATTTCTCTTTG+AGG + chr1_1:52521483-52521502 Msa0027890:intron 30.0%
GAAATTGTTAGAACAACAAC+TGG + chr1_1:52521692-52521711 Msa0027890:intron 30.0%
CTTCACTTCCTTTGTATTAT+CGG + chr1_1:52521814-52521833 Msa0027890:intron 30.0%
ATCTTTCACCGATAATACAA+AGG - chr1_1:52521825-52521844 None:intergenic 30.0%
TGTATTATCGGTGAAAGATT+AGG + chr1_1:52521826-52521845 Msa0027890:intron 30.0%
GTATTATCGGTGAAAGATTA+GGG + chr1_1:52521827-52521846 Msa0027890:intron 30.0%
AATGAATAGAGAAAAGGAGA+AGG + chr1_1:52521932-52521951 Msa0027890:intron 30.0%
AAAGGAGAAGGATTAAACAA+AGG + chr1_1:52521944-52521963 Msa0027890:intron 30.0%
AAGGAGAAGGATTAAACAAA+GGG + chr1_1:52521945-52521964 Msa0027890:intron 30.0%
ATTACATTGAGTATATGAGC+AGG + chr1_1:52522030-52522049 Msa0027890:intron 30.0%
ATGATTTAATGACACGTACA+AGG - chr1_1:52522151-52522170 None:intergenic 30.0%
AACACGAATAATACACTGAA+TGG - chr1_1:52522182-52522201 None:intergenic 30.0%
ATCATGCTCATCAATTTCAT+GGG - chr1_1:52522578-52522597 None:intergenic 30.0%
TATCATGCTCATCAATTTCA+TGG - chr1_1:52522579-52522598 None:intergenic 30.0%
CACATAAGTTATCTTTGTAC+AGG - chr1_1:52522706-52522725 None:intergenic 30.0%
!! CGTCATTTTGTTTCAACTAT+TGG + chr1_1:52522740-52522759 Msa0027890:intron 30.0%
AGTAAAGGATAACTTACTTC+AGG + chr1_1:52522830-52522849 Msa0027890:intron 30.0%
AAAATTATACCATGTCCATC+TGG + chr1_1:52522923-52522942 Msa0027890:intron 30.0%
GGAAATTGTGTTAGTGAATA+GGG - chr1_1:52522981-52523000 None:intergenic 30.0%
TGGAAATTGTGTTAGTGAAT+AGG - chr1_1:52522982-52523001 None:intergenic 30.0%
! ATTTGGAGTTCATTAAACTC+TGG + chr1_1:52523096-52523115 Msa0027890:intron 30.0%
! ATGGTGGAAAATCAGAAAAA+CGG - chr1_1:52523130-52523149 None:intergenic 30.0%
! TCTACAGAAAAAAGGGTTTT+AGG - chr1_1:52523354-52523373 None:intergenic 30.0%
! TAAACTCTGCAATTTTGTGA+TGG + chr1_1:52523435-52523454 Msa0027890:intron 30.0%
!! TCAGCTAGAAACAGTTTTAA+TGG + chr1_1:52523477-52523496 Msa0027890:intron 30.0%
!! CAGCTAGAAACAGTTTTAAT+GGG + chr1_1:52523478-52523497 Msa0027890:intron 30.0%
TGTCTGTTGGTATTTATGTA+GGG + chr1_1:52523640-52523659 Msa0027890:intron 30.0%
ATTTATGTAGGGCAATGATA+TGG + chr1_1:52523651-52523670 Msa0027890:intron 30.0%
CAATGATATGGATTCTTCAA+GGG + chr1_1:52523663-52523682 Msa0027890:intron 30.0%
AATGATATGGATTCTTCAAG+GGG + chr1_1:52523664-52523683 Msa0027890:intron 30.0%
! TTTGGTCTTCTTCCATATTA+TGG + chr1_1:52523880-52523899 Msa0027890:intron 30.0%
! CTTAAGAGGGCATATATATA+AGG - chr1_1:52523954-52523973 None:intergenic 30.0%
CTTATATATATGCCCTCTTA+AGG + chr1_1:52523952-52523971 Msa0027890:intron 30.0%
!!! TTTTGCTTTCCTTTGTTGTT+TGG + chr1_1:52524012-52524031 Msa0027890:intron 30.0%
!! TTTGCTTTCCTTTGTTGTTT+GGG + chr1_1:52524013-52524032 Msa0027890:intron 30.0%
! TTTCTGTATGATGATGTTTC+AGG + chr1_1:52524099-52524118 Msa0027890:intron 30.0%
ATCTTTATACAGACACACAA+CGG - chr1_1:52524302-52524321 None:intergenic 30.0%
CAATGAATGATAAGAACACT+TGG + chr1_1:52524425-52524444 Msa0027890:three_prime_UTR 30.0%
! TAAGTAAAGGTTCTTTGGAG+TGG - chr1_1:52521057-52521076 None:intergenic 35.0%
GTGCATAAGTAAAGGTTCTT+TGG - chr1_1:52521062-52521081 None:intergenic 35.0%
GTTGTTCTGTGCATAAGTAA+AGG - chr1_1:52521070-52521089 None:intergenic 35.0%
TTACTTATGCACAGAACAAC+AGG + chr1_1:52521070-52521089 Msa0027890:five_prime_UTR 35.0%
CGAATTGAATAACAACCGAT+AGG - chr1_1:52521361-52521380 None:intergenic 35.0%
!!! AACCACTTTTTAACGATCAC+TGG + chr1_1:52521608-52521627 Msa0027890:intron 35.0%
ACATTGCACGTTCTTTGTTA+GGG - chr1_1:52521744-52521763 None:intergenic 35.0%
AACATTGCACGTTCTTTGTT+AGG - chr1_1:52521745-52521764 None:intergenic 35.0%
AACAAAGAACGTGCAATGTT+TGG + chr1_1:52521745-52521764 Msa0027890:intron 35.0%
! CAATGTTTGGTGACAAAGTT+CGG + chr1_1:52521758-52521777 Msa0027890:intron 35.0%
AGGAGAAGGATTAAACAAAG+GGG + chr1_1:52521946-52521965 Msa0027890:intron 35.0%
TTTGTCACAAATATGAGGCA+AGG + chr1_1:52522101-52522120 Msa0027890:intron 35.0%
GATAGACAAGGAAAAACTGA+AGG - chr1_1:52522213-52522232 None:intergenic 35.0%
CTTAATGACATGGATAGACA+AGG - chr1_1:52522225-52522244 None:intergenic 35.0%
CTTGTCTATCCATGTCATTA+AGG + chr1_1:52522223-52522242 Msa0027890:intron 35.0%
TGTTTATTACCTGACCACAT+TGG + chr1_1:52522423-52522442 Msa0027890:intron 35.0%
TAGTAAAATCCAATGTGGTC+AGG - chr1_1:52522435-52522454 None:intergenic 35.0%
! AAAGAGCAACTCTGTTGTTT+CGG - chr1_1:52522498-52522517 None:intergenic 35.0%
! AACAGAGTTGCTCTTTTTGA+TGG + chr1_1:52522502-52522521 Msa0027890:CDS 35.0%
!! TGCTCTTTTTGATGGTATTG+AGG + chr1_1:52522510-52522529 Msa0027890:CDS 35.0%
!! TCTTTTTGATGGTATTGAGG+AGG + chr1_1:52522513-52522532 Msa0027890:CDS 35.0%
!! CTTTTTGATGGTATTGAGGA+GGG + chr1_1:52522514-52522533 Msa0027890:CDS 35.0%
! GCATGATAATGAACAAGCAA+TGG + chr1_1:52522591-52522610 Msa0027890:CDS 35.0%
GATAATGAACAAGCAATGGA+TGG + chr1_1:52522595-52522614 Msa0027890:CDS 35.0%
!! AATGGATGGATTGCAAGATA+GGG + chr1_1:52522609-52522628 Msa0027890:CDS 35.0%
TATCTTTGTACAGGATAGCT+AGG - chr1_1:52522697-52522716 None:intergenic 35.0%
!! TTGTTTCTGTTGGGAAGTAA+AGG + chr1_1:52522815-52522834 Msa0027890:intron 35.0%
!!! TTCAGGAATTGTGTCGTTTT+TGG + chr1_1:52522847-52522866 Msa0027890:intron 35.0%
ATTGTGTTAGTGAATAGGGA+GGG - chr1_1:52522977-52522996 None:intergenic 35.0%
AATTGTGTTAGTGAATAGGG+AGG - chr1_1:52522978-52522997 None:intergenic 35.0%
TGGAAAATCAGAAAAACGGT+AGG - chr1_1:52523126-52523145 None:intergenic 35.0%
!! AACTGTTTCTAGCTGATACA+GGG - chr1_1:52523473-52523492 None:intergenic 35.0%
!! AAACTGTTTCTAGCTGATAC+AGG - chr1_1:52523474-52523493 None:intergenic 35.0%
TTTCTGCTTTAACTGTCTGT+TGG + chr1_1:52523627-52523646 Msa0027890:intron 35.0%
CTGTCTGTTGGTATTTATGT+AGG + chr1_1:52523639-52523658 Msa0027890:intron 35.0%
GCAATGATATGGATTCTTCA+AGG + chr1_1:52523662-52523681 Msa0027890:intron 35.0%
! ATTGTTCCAGTGCTGTTAAA+CGG + chr1_1:52523732-52523751 Msa0027890:intron 35.0%
GTCATATAAACATGCCATTG+CGG - chr1_1:52523855-52523874 None:intergenic 35.0%
GCAATGGCATGTTTATATGA+CGG + chr1_1:52523854-52523873 Msa0027890:intron 35.0%
GAACTATCCAATGTTGTTGA+TGG - chr1_1:52523915-52523934 None:intergenic 35.0%
!! ATTGGCATTGATCCTTAAGA+GGG - chr1_1:52523967-52523986 None:intergenic 35.0%
!! AATTGGCATTGATCCTTAAG+AGG - chr1_1:52523968-52523987 None:intergenic 35.0%
GAGAATGACAACACATTGAT+GGG + chr1_1:52524035-52524054 Msa0027890:intron 35.0%
AGAATGACAACACATTGATG+GGG + chr1_1:52524036-52524055 Msa0027890:intron 35.0%
AAGGATGAAGCATGCATAAA+GGG - chr1_1:52524352-52524371 None:intergenic 35.0%
ATGAAAGCTTTCCAAACTGA+AGG - chr1_1:52524371-52524390 None:intergenic 35.0%
CTGGAAATTCGTGTTCCTAT+CGG + chr1_1:52521343-52521362 Msa0027890:intron 40.0%
TAATACTTGCTTCAGATCCG+TGG + chr1_1:52521400-52521419 Msa0027890:intron 40.0%
TGCCAGTGATCGTTAAAAAG+TGG - chr1_1:52521613-52521632 None:intergenic 40.0%
GAAGGGGTAAAGTTGTAATC+TGG - chr1_1:52521888-52521907 None:intergenic 40.0%
GAAGGATTAAACAAAGGGGA+AGG + chr1_1:52521950-52521969 Msa0027890:intron 40.0%
AGAATCTACATGCATGCATG+AGG - chr1_1:52522072-52522091 None:intergenic 40.0%
GTGGTCAGGTAATAAACACA+AGG - chr1_1:52522421-52522440 None:intergenic 40.0%
!! AAGAGCAACTCTGTTGTTTC+GGG - chr1_1:52522497-52522516 None:intergenic 40.0%
AATTTCATGGGAAGAAGCTG+AGG - chr1_1:52522566-52522585 None:intergenic 40.0%
!! CAATGGATGGATTGCAAGAT+AGG + chr1_1:52522608-52522627 Msa0027890:CDS 40.0%
GTCTATGGCATGTCAAGTAA+CGG - chr1_1:52522669-52522688 None:intergenic 40.0%
CTATCAGGTTCATATCCAGA+TGG - chr1_1:52522941-52522960 None:intergenic 40.0%
CATCTGGATATGAACCTGAT+AGG + chr1_1:52522939-52522958 Msa0027890:intron 40.0%
CCTCTGCTACTACAATCTTA+TGG - chr1_1:52523002-52523021 None:intergenic 40.0%
CCATAAGATTGTAGTAGCAG+AGG + chr1_1:52522999-52523018 Msa0027890:intron 40.0%
TAGCAGAGGAAATAGAAGAG+AGG + chr1_1:52523013-52523032 Msa0027890:intron 40.0%
AGCAGAGGAAATAGAAGAGA+GGG + chr1_1:52523014-52523033 Msa0027890:intron 40.0%
AGGAAATAGAAGAGAGGGAA+GGG + chr1_1:52523019-52523038 Msa0027890:intron 40.0%
TTAGAAAGGATTAGGAGCTC+TGG + chr1_1:52523068-52523087 Msa0027890:intron 40.0%
TGAGCTCAAAGCTCTTACAA+TGG - chr1_1:52523149-52523168 None:intergenic 40.0%
ACTTCGCTTGCTTAAATTCC+TGG + chr1_1:52523190-52523209 Msa0027890:intron 40.0%
CTTCGCTTGCTTAAATTCCT+GGG + chr1_1:52523191-52523210 Msa0027890:intron 40.0%
TCTGAATTCTGATAGAACCC+AGG - chr1_1:52523211-52523230 None:intergenic 40.0%
TGAAAGATGTGATGCAGACA+TGG - chr1_1:52523240-52523259 None:intergenic 40.0%
!! ACTGTTTCTAGCTGATACAG+GGG - chr1_1:52523472-52523491 None:intergenic 40.0%
ATTTGTCCATAGTTCCTGAG+AGG - chr1_1:52523693-52523712 None:intergenic 40.0%
! ATTTTTGACAACTGCCCCAT+AGG + chr1_1:52523790-52523809 Msa0027890:intron 40.0%
TCCCTTCACAAATTGCCTAT+GGG - chr1_1:52523808-52523827 None:intergenic 40.0%
ATCCCTTCACAAATTGCCTA+TGG - chr1_1:52523809-52523828 None:intergenic 40.0%
! CTATCCAATGTTGTTGATGG+CGG - chr1_1:52523912-52523931 None:intergenic 40.0%
GTCATTCTCCCAAACAACAA+AGG - chr1_1:52524024-52524043 None:intergenic 40.0%
GGAGAATGACAACACATTGA+TGG + chr1_1:52524034-52524053 Msa0027890:intron 40.0%
CTACCAGTGAGAACATTCTT+CGG - chr1_1:52524144-52524163 None:intergenic 40.0%
GCTTGATGTTGAATCTGAGA+AGG + chr1_1:52524229-52524248 Msa0027890:three_prime_UTR 40.0%
GAAGGATGAAGCATGCATAA+AGG - chr1_1:52524353-52524372 None:intergenic 40.0%
AGTGGAGGAGAGATAGAAAG+AGG - chr1_1:52521039-52521058 None:intergenic 45.0%
!! GTAAAGGTTCTTTGGAGTGG+AGG - chr1_1:52521054-52521073 None:intergenic 45.0%
CGTCTACTACACAGTATCCA+CGG - chr1_1:52521420-52521439 None:intergenic 45.0%
CGTGGATACTGTGTAGTAGA+CGG + chr1_1:52521418-52521437 Msa0027890:intron 45.0%
GTGGATACTGTGTAGTAGAC+GGG + chr1_1:52521419-52521438 Msa0027890:intron 45.0%
! TACTGTGTAGTAGACGGGTT+TGG + chr1_1:52521424-52521443 Msa0027890:intron 45.0%
TTGCGTGTGTTAAGAGCTGA+AGG + chr1_1:52521537-52521556 Msa0027890:intron 45.0%
GAAGGTGGTGAATTGTGGAT+AGG + chr1_1:52521555-52521574 Msa0027890:intron 45.0%
CTATGACGTCAAGTAGGAAG+GGG - chr1_1:52521904-52521923 None:intergenic 45.0%
CCTATGACGTCAAGTAGGAA+GGG - chr1_1:52521905-52521924 None:intergenic 45.0%
TGTTGCCTATGACGTCAAGT+AGG - chr1_1:52521910-52521929 None:intergenic 45.0%
AGGTGCATGCTAGTGTTCAT+TGG + chr1_1:52521970-52521989 Msa0027890:intron 45.0%
! TTTGATGGTATTGAGGAGGG+TGG + chr1_1:52522517-52522536 Msa0027890:CDS 45.0%
GATAGCTAGGTGGTAGTCTA+TGG - chr1_1:52522684-52522703 None:intergenic 45.0%
CTTTGTACAGGATAGCTAGG+TGG - chr1_1:52522694-52522713 None:intergenic 45.0%
GGTTCATATCCAGATGGACA+TGG - chr1_1:52522935-52522954 None:intergenic 45.0%
ATGAACCTGATAGGACACCA+AGG + chr1_1:52522948-52522967 Msa0027890:intron 45.0%
GAGGAAATAGAAGAGAGGGA+AGG + chr1_1:52523018-52523037 Msa0027890:intron 45.0%
GCTCAAAGCTCTTACAATGG+TGG - chr1_1:52523146-52523165 None:intergenic 45.0%
AAGATGTGATGCAGACATGG+AGG - chr1_1:52523237-52523256 None:intergenic 45.0%
GCTGTCAGGTGATATACATG+AGG + chr1_1:52523514-52523533 Msa0027890:intron 45.0%
GTCAGGTGATATACATGAGG+AGG + chr1_1:52523517-52523536 Msa0027890:CDS 45.0%
AGGTGATATACATGAGGAGG+TGG + chr1_1:52523520-52523539 Msa0027890:CDS 45.0%
GGATAATCATAACCGCATGC+TGG + chr1_1:52523541-52523560 Msa0027890:CDS 45.0%
TAACCGCATGCTGGATCATA+TGG + chr1_1:52523550-52523569 Msa0027890:CDS 45.0%
ACACCATATGATCCAGCATG+CGG - chr1_1:52523556-52523575 None:intergenic 45.0%
! TGACGTGCCATTATGACATG+TGG - chr1_1:52523769-52523788 None:intergenic 45.0%
CCCTTCACAAATTGCCTATG+GGG - chr1_1:52523807-52523826 None:intergenic 45.0%
CCCCATAGGCAATTTGTGAA+GGG + chr1_1:52523804-52523823 Msa0027890:intron 45.0%
ATGACAACACATTGATGGGG+TGG + chr1_1:52524039-52524058 Msa0027890:intron 45.0%
GCATGCTTCATCCTTCAGTT+TGG + chr1_1:52524357-52524376 Msa0027890:three_prime_UTR 45.0%
!!! ATATTTTTTTTTATTTGATT+AGG + chr1_1:52521193-52521212 Msa0027890:intron 5.0%
GATCGAGTGAATCCGTGATC+TGG + chr1_1:52521222-52521241 Msa0027890:five_prime_UTR 50.0%
CGTGTGTTAAGAGCTGAAGG+TGG + chr1_1:52521540-52521559 Msa0027890:intron 50.0%
GAGCTGAAGGTGGTGAATTG+TGG + chr1_1:52521550-52521569 Msa0027890:intron 50.0%
CCCTTCCTACTTGACGTCAT+AGG + chr1_1:52521902-52521921 Msa0027890:intron 50.0%
GCCTATGACGTCAAGTAGGA+AGG - chr1_1:52521906-52521925 None:intergenic 50.0%
! AAGGATTAGGAGCTCTGGTC+TGG + chr1_1:52523073-52523092 Msa0027890:intron 50.0%
! TAGGAGCTCTGGTCTGGATT+TGG + chr1_1:52523079-52523098 Msa0027890:intron 50.0%
GTCTGTTTGCAACAGCTGTC+AGG + chr1_1:52523500-52523519 Msa0027890:intron 50.0%
CATTATGACATGTGGCGCCA+TGG - chr1_1:52523761-52523780 None:intergenic 50.0%
CATGGCGCCACATGTCATAA+TGG + chr1_1:52523759-52523778 Msa0027890:intron 50.0%
GCCCCATAGGCAATTTGTGA+AGG + chr1_1:52523803-52523822 Msa0027890:intron 50.0%
TTGTGAAGGGATGTCTGCCT+TGG + chr1_1:52523817-52523836 Msa0027890:intron 50.0%
!! CCAATGTTGTTGATGGCGGA+GGG - chr1_1:52523908-52523927 None:intergenic 50.0%
!! TCCAATGTTGTTGATGGCGG+AGG - chr1_1:52523909-52523928 None:intergenic 50.0%
AACACATTGATGGGGTGGAG+TGG + chr1_1:52524044-52524063 Msa0027890:intron 50.0%
GAGCCGAAGAATGTTCTCAC+TGG + chr1_1:52524138-52524157 Msa0027890:CDS 50.0%
CGAGTGAATCCGTGATCTGG+TGG + chr1_1:52521225-52521244 Msa0027890:five_prime_UTR 55.0%
GTGAATCCGTGATCTGGTGG+TGG + chr1_1:52521228-52521247 Msa0027890:five_prime_UTR 55.0%
!! AATCCGTGATCTGGTGGTGG+TGG + chr1_1:52521231-52521250 Msa0027890:five_prime_UTR 55.0%
TCACCACCACCACCAGATCA+CGG - chr1_1:52521237-52521256 None:intergenic 55.0%
AGGAAGTGAAGCTGCTCTGC+AGG - chr1_1:52521805-52521824 None:intergenic 55.0%
AGAAGAGAGGGAAGGGAGTG+AGG + chr1_1:52523026-52523045 Msa0027890:intron 55.0%
TCTTCAAGGGGAGTCCTCTC+AGG + chr1_1:52523676-52523695 Msa0027890:intron 55.0%
GGGAGTCCTCTCAGGAACTA+TGG + chr1_1:52523684-52523703 Msa0027890:intron 55.0%
TGGACGCCGTTTAACAGCAC+TGG - chr1_1:52523741-52523760 None:intergenic 55.0%
! GTGCTGTTAAACGGCGTCCA+TGG + chr1_1:52523741-52523760 Msa0027890:intron 55.0%
!! TGGCGGAGGGTGCCATAATA+TGG - chr1_1:52523895-52523914 None:intergenic 55.0%
CCCTCCGCCATCAACAACAT+TGG + chr1_1:52523905-52523924 Msa0027890:intron 55.0%
TGCTCTGCAGGCAGAGACGT+AGG - chr1_1:52521793-52521812 None:intergenic 60.0%
!! GGCGACCTTGGTGTCCTATC+AGG - chr1_1:52522956-52522975 None:intergenic 60.0%
GTGAATAGGGAGGGCGACCT+TGG - chr1_1:52522968-52522987 None:intergenic 60.0%
TGCGGCTTATGACAGCGCCA+AGG - chr1_1:52523837-52523856 None:intergenic 60.0%
GGCGCTGTCATAAGCCGCAA+TGG + chr1_1:52523838-52523857 Msa0027890:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 52521023 52524455 52521023 ID=Msa0027890;Name=Msa0027890
chr1_1 mRNA 52521023 52524455 52521023 ID=Msa0027890-mRNA-1;Parent=Msa0027890;Name=Msa0027890-mRNA-1;_AED=0.21;_eAED=0.21;_QI=114|0.75|1|1|0.75|0.6|5|245|107
chr1_1 exon 52521023 52521091 52521023 ID=Msa0027890-mRNA-1:exon:15455;Parent=Msa0027890-mRNA-1
chr1_1 exon 52521215 52521276 52521215 ID=Msa0027890-mRNA-1:exon:15456;Parent=Msa0027890-mRNA-1
chr1_1 exon 52522489 52522648 52522489 ID=Msa0027890-mRNA-1:exon:15457;Parent=Msa0027890-mRNA-1
chr1_1 exon 52523515 52523571 52523515 ID=Msa0027890-mRNA-1:exon:15458;Parent=Msa0027890-mRNA-1
chr1_1 exon 52524121 52524455 52524121 ID=Msa0027890-mRNA-1:exon:15459;Parent=Msa0027890-mRNA-1
chr1_1 five_prime_UTR 52521023 52521091 52521023 ID=Msa0027890-mRNA-1:five_prime_utr;Parent=Msa0027890-mRNA-1
chr1_1 five_prime_UTR 52521215 52521259 52521215 ID=Msa0027890-mRNA-1:five_prime_utr;Parent=Msa0027890-mRNA-1
chr1_1 CDS 52521260 52521276 52521260 ID=Msa0027890-mRNA-1:cds;Parent=Msa0027890-mRNA-1
chr1_1 CDS 52522489 52522648 52522489 ID=Msa0027890-mRNA-1:cds;Parent=Msa0027890-mRNA-1
chr1_1 CDS 52523515 52523571 52523515 ID=Msa0027890-mRNA-1:cds;Parent=Msa0027890-mRNA-1
chr1_1 CDS 52524121 52524210 52524121 ID=Msa0027890-mRNA-1:cds;Parent=Msa0027890-mRNA-1
chr1_1 three_prime_UTR 52524211 52524455 52524211 ID=Msa0027890-mRNA-1:three_prime_utr;Parent=Msa0027890-mRNA-1
Gene Sequence

>Msa0027890

ATGATGAATTCTAGAAGAGACACCCGAAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGAATCAGAGCATCATCTATGTACTCCTCAGCTTCTTCCCATGAAATTGATGAGCATGATAATGAACAAGCAATGGATGGATTGCAAGATAGGGTTAATCTGCTGAAAAGACTGTCAGGTGATATACATGAGGAGGTGGATAATCATAACCGCATGCTGGATCATATGGTATTTGAGACAAAATCGAGCCGAAGAATGTTCTCACTGGTAGCATCCTTTGTTGTGATTTTTCTTATCATTTATTATCTAACTAGGTAA

Protein sequence

>Msa0027890

MMNSRRDTRNNRVALFDGIEEGGIRASSMYSSASSHEIDEHDNEQAMDGLQDRVNLLKRLSGDIHEEVDNHNRMLDHMVFETKSSRRMFSLVASFVVIFLIIYYLTR*