AlfalfaGEDB | Msa0159420

M. sativa cultivar zhongmu-4 / Msa0159420

KEGG: K03094
GO: -
PFAM: PF03931.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0159420	sp\|Q9FHW7\|SKP1B_ARATH	77.059	170	23	1	3	156	2	171	2.49e-84	248

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0159420	Q9XF99	100.000	153	0	0	4	156	1	153	1.10e-107	312

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0159420	0.826106	3.255028e-54	-8.615850e-47
Msa0008090	Msa0159420	0.822495	2.298074e-53	-8.615850e-47
Msa0008200	Msa0159420	0.819190	1.322877e-52	-8.615850e-47
Msa0010490	Msa0159420	0.826412	2.751055e-54	-8.615850e-47
Msa0010500	Msa0159420	0.825110	5.605639e-54	-8.615850e-47
Msa0015090	Msa0159420	0.806157	9.427384e-50	-8.615850e-47
Msa0016510	Msa0159420	0.802555	5.307222e-49	-8.615850e-47
Msa0017320	Msa0159420	0.825644	4.190229e-54	-8.615850e-47
Msa0020390	Msa0159420	0.881103	3.168948e-70	-8.615850e-47
Msa0020410	Msa0159420	0.837825	4.136194e-57	-8.615850e-47

Showing 1 to 10 of 497 entries

Previous1 2 3 4 5…50Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0159420	MtrunA17_Chr5g0405891	98.052	154	3	0	3	156	2	155	2.15e-110	310
Msa0159420	MtrunA17_Chr5g0405871	96.104	154	6	0	3	156	2	155	1.52e-108	305
Msa0159420	MtrunA17_Chr7g0221641	87.179	156	20	0	1	156	1	156	4.45e-93	266
Msa0159420	MtrunA17_Chr7g0259261	86.538	156	21	0	1	156	1	156	3.66e-92	264
Msa0159420	MtrunA17_Chr7g0259271	86.538	156	21	0	1	156	1	156	4.03e-92	264
Msa0159420	MtrunA17_Chr7g0221621	83.333	156	26	0	1	156	1	156	3.39e-86	249
Msa0159420	MtrunA17_Chr3g0139751	76.582	158	35	1	1	156	1	158	9.52e-86	248
Msa0159420	MtrunA17_Chr4g0014211	78.846	156	32	1	2	156	8	163	1.10e-85	248
Msa0159420	MtrunA17_Chr7g0259231	75.159	157	37	1	2	156	3	159	4.14e-84	244
Msa0159420	MtrunA17_Chr4g0014231	73.885	157	40	1	1	156	19	175	5.05e-84	244

Showing 1 to 10 of 60 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0159420	AT5G42190.1	77.059	170	23	1	3	156	2	171	2.54e-85	248
Msa0159420	AT1G20140.1	72.393	163	38	2	1	156	1	163	3.78e-83	242
Msa0159420	AT1G75950.1	77.987	159	29	1	4	156	2	160	3.89e-83	242
Msa0159420	AT2G25700.1	68.712	163	44	2	1	156	1	163	1.92e-78	230
Msa0159420	AT4G34210.1	70.130	154	42	2	4	156	2	152	1.85e-76	224
Msa0159420	AT4G34470.1	69.481	154	43	2	4	156	2	152	1.15e-75	223
Msa0159420	AT3G21860.1	67.097	155	45	3	4	156	2	152	5.05e-68	203
Msa0159420	AT3G21850.1	64.516	155	50	3	4	156	2	153	7.31e-67	200
Msa0159420	AT3G60010.1	64.331	157	47	3	5	156	2	154	2.18e-66	199
Msa0159420	AT2G03170.1	62.338	154	51	2	4	156	2	149	2.36e-63	191

Showing 1 to 10 of 26 entries

Previous1 2 3Next

Find 52 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCGCTTCATCGACCTCGA+AGG	0.623664	1_4:-29877824	None:intergenic
AAGATCTTGCTGGTAACGTT+GGG	0.477857	1_4:-29877913	None:intergenic
AAGTTACTCGCTGTTAAAAT+TGG	0.311029	1_4:+29880059	Msa0159420:three_prime_UTR
AAGTTCGTAGGGAAAACCAA+TGG	0.564773	1_4:+29879737	Msa0159420:CDS
AATGCGTTGGTTTGGCATGA+GGG	0.544945	1_4:+29879997	Msa0159420:three_prime_UTR
AATGTCTTGCGGATCTCCTC+TGG	0.448832	1_4:-29879676	None:intergenic
ACGAGGATGAGCTTAAGTCT+TGG	0.544399	1_4:+29877998	Msa0159420:CDS
ACTGTTGCAGACATGATCAA+GGG	0.659883	1_4:+29879646	Msa0159420:CDS
AGCATCATTCAAATGCCCAT+TGG	0.546088	1_4:-29879753	None:intergenic
AGGAAGAGGAGGAAGTTCGT+AGG	0.548370	1_4:+29879725	Msa0159420:CDS

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CCAGAAAACCCTAATAATTT+AGG	-	chr1_4:29878179-29878198	None:intergenic	30.0%
TGAGTTGTAGGATATTGTTA+TGG	+	chr1_4:29878511-29878530	Msa0159420:intron	30.0%
AAATATTCGTCGTGTTTGTT+TGG	+	chr1_4:29878724-29878743	Msa0159420:intron	30.0%
TACGCGTTTACTGAAAATTA+AGG	+	chr1_4:29878861-29878880	Msa0159420:intron	30.0%
ACGCGTTTACTGAAAATTAA+GGG	+	chr1_4:29878862-29878881	Msa0159420:intron	30.0%
ACAACTTCTAGTAAATGTTG+TGG	+	chr1_4:29879271-29879290	Msa0159420:intron	30.0%
CAACTTCTAGTAAATGTTGT+GGG	+	chr1_4:29879272-29879291	Msa0159420:intron	30.0%
ACAAACAAACAGCCATATTT+GGG	-	chr1_4:29879321-29879340	None:intergenic	30.0%
AACAAACAAACAGCCATATT+TGG	-	chr1_4:29879322-29879341	None:intergenic	30.0%
AACAATAATCCAGACTACTT+AGG	-	chr1_4:29879387-29879406	None:intergenic	30.0%

Showing 1 to 10 of 135 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	29877648	29880104	29877648	ID=Msa0159420;Name=Msa0159420
chr1_4	mRNA	29877648	29880104	29877648	ID=Msa0159420-mRNA-1;Parent=Msa0159420;Name=Msa0159420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=127\|1\|1\|1\|1\|1\|2\|333\|156
chr1_4	exon	29877648	29878071	29877648	ID=Msa0159420-mRNA-1:exon:9567;Parent=Msa0159420-mRNA-1
chr1_4	exon	29879598	29880104	29879598	ID=Msa0159420-mRNA-1:exon:9568;Parent=Msa0159420-mRNA-1
chr1_4	five_prime_UTR	29877648	29877774	29877648	ID=Msa0159420-mRNA-1:five_prime_utr;Parent=Msa0159420-mRNA-1
chr1_4	CDS	29877775	29878071	29877775	ID=Msa0159420-mRNA-1:cds;Parent=Msa0159420-mRNA-1
chr1_4	CDS	29879598	29879771	29879598	ID=Msa0159420-mRNA-1:cds;Parent=Msa0159420-mRNA-1
chr1_4	three_prime_UTR	29879772	29880104	29879772	ID=Msa0159420-mRNA-1:three_prime_utr;Parent=Msa0159420-mRNA-1

Gene Sequence

>Msa0159420

ATGTCTTCAACAACAAGAAAGATCACTCTGAAGAGTTCCGACGGTGAGACCTTCGAGGTCGATGAAGCGGTTGCTTTGGAATCGCAGACGATCAAGCATATGATCGAAGATGATTGCGCTGACAGTGGAATCCCTCTTCCCAACGTTACCAGCAAGATCTTGGCGAAGGTGATTGAGTATTGCAAGAAGCATGTTGACGCTGCTGCTGCTGAAGACAAACCTAACGAGGATGAGCTTAAGTCTTGGGATTCCGAGTTCGTGAAGGTTGATCAGGCTACGCTTTTTGATCTCATCTTGGCTGCTAATTACTTGAATATCAAGAGCTTGCTGGATCTTACCTGCCAGACTGTTGCAGACATGATCAAGGGAAAGACACCAGAGGAGATCCGCAAGACATTCAACATCAAGAATGATTTCTCACCTGAGGAAGAGGAGGAAGTTCGTAGGGAAAACCAATGGGCATTTGAATGA

Protein sequence

>Msa0159420

MSSTTRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVDAAAAEDKPNEDELKSWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPEEEEEVRRENQWAFE*