AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0159420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159420 MtrunA17_Chr5g0405891 98.052 154 3 0 3 156 2 155 2.15e-110 310
Msa0159420 MtrunA17_Chr5g0405871 96.104 154 6 0 3 156 2 155 1.52e-108 305
Msa0159420 MtrunA17_Chr7g0221641 87.179 156 20 0 1 156 1 156 4.45e-93 266
Msa0159420 MtrunA17_Chr7g0259261 86.538 156 21 0 1 156 1 156 3.66e-92 264
Msa0159420 MtrunA17_Chr7g0259271 86.538 156 21 0 1 156 1 156 4.03e-92 264
Msa0159420 MtrunA17_Chr7g0221621 83.333 156 26 0 1 156 1 156 3.39e-86 249
Msa0159420 MtrunA17_Chr3g0139751 76.582 158 35 1 1 156 1 158 9.52e-86 248
Msa0159420 MtrunA17_Chr4g0014211 78.846 156 32 1 2 156 8 163 1.10e-85 248
Msa0159420 MtrunA17_Chr7g0259231 75.159 157 37 1 2 156 3 159 4.14e-84 244
Msa0159420 MtrunA17_Chr4g0014231 73.885 157 40 1 1 156 19 175 5.05e-84 244
Msa0159420 MtrunA17_Chr8g0361911 73.885 157 40 1 1 156 1 157 1.44e-79 232
Msa0159420 MtrunA17_Chr7g0259371 72.152 158 42 2 1 156 1 158 5.36e-79 231
Msa0159420 MtrunA17_Chr5g0438791 72.078 154 42 1 3 155 2 155 1.97e-77 227
Msa0159420 MtrunA17_Chr8g0362291 69.677 155 46 1 3 156 2 156 4.48e-76 223
Msa0159420 MtrunA17_Chr4g0014271 68.790 157 41 3 2 156 3 153 2.48e-71 211
Msa0159420 MtrunA17_Chr4g0014241 72.258 155 36 2 3 156 2 150 1.50e-70 209
Msa0159420 MtrunA17_Chr4g0014261 66.667 156 45 2 2 156 3 152 8.45e-70 207
Msa0159420 MtrunA17_Chr4g0015171 60.390 154 61 0 3 156 7 160 3.82e-68 203
Msa0159420 MtrunA17_Chr7g0259381 66.456 158 37 3 1 156 1 144 8.33e-68 202
Msa0159420 MtrunA17_Chr4g0015151 60.390 154 61 0 3 156 7 160 4.60e-65 196
Msa0159420 MtrunA17_Chr4g0007651 56.410 195 42 4 5 156 26 220 1.35e-63 194
Msa0159420 MtrunA17_Chr4g0009571 58.710 155 61 1 2 156 4 155 8.74e-59 179
Msa0159420 MtrunA17_Chr1g0202631 83.333 96 14 1 63 156 201 296 8.00e-52 166
Msa0159420 MtrunA17_Chr8g0381421 69.919 123 20 1 34 156 1 106 2.15e-50 157
Msa0159420 MtrunA17_Chr7g0214701 54.610 141 55 2 2 142 4 135 6.63e-44 141
Msa0159420 MtrunA17_Chr7g0259441 53.846 156 30 4 1 114 1 156 9.24e-42 137
Msa0159420 MtrunA17_Chr7g0259421 47.093 172 38 4 1 119 1 172 6.20e-40 133
Msa0159420 MtrunA17_Chr4g0014221 63.000 100 23 2 57 156 2 87 3.41e-36 120
Msa0159420 MtrunA17_Chr5g0436881 69.512 82 24 1 3 83 32 113 1.16e-35 119
Msa0159420 MtrunA17_Chr4g0067031 48.980 147 68 2 2 146 235 376 2.52e-35 125
Msa0159420 MtrunA17_Chr4g0007851 61.856 97 35 1 62 156 54 150 3.54e-35 119
Msa0159420 MtrunA17_Chr4g0015161 58.416 101 34 1 33 133 8 100 1.52e-33 114
Msa0159420 MtrunA17_Chr1g0211011 39.355 155 78 2 8 146 1 155 1.26e-32 113
Msa0159420 MtrunA17_Chr4g0074721 57.983 119 33 4 3 119 2 105 4.04e-32 110
Msa0159420 MtrunA17_Chr7g0259391 85.000 60 8 1 1 59 1 60 2.46e-28 99.8
Msa0159420 MtrunA17_Chr2g0310471 39.873 158 83 5 1 155 30 178 2.21e-26 99.0
Msa0159420 MtrunA17_Chr7g0259411 50.459 109 32 2 1 109 1 87 2.30e-25 95.9
Msa0159420 MtrunA17_Chr7g0259411 51.685 89 39 3 48 135 102 187 5.75e-20 82.0
Msa0159420 MtrunA17_Chr5g0447291 37.736 159 78 4 1 155 1 142 1.34e-23 90.1
Msa0159420 MtrunA17_Chr2g0285701 34.667 150 85 3 8 156 3 140 2.09e-22 87.0
Msa0159420 MtrunA17_Chr1g0167301 35.256 156 63 4 8 146 1 135 3.08e-22 89.7
Msa0159420 MtrunA17_Chr1g0210991 34.810 158 65 4 8 148 1 137 5.61e-21 85.9
Msa0159420 MtrunA17_Chr4g0071681 79.167 48 9 1 94 140 2 49 8.44e-20 77.4
Msa0159420 MtrunA17_Chr6g0470511 36.806 144 81 5 8 146 17 155 3.01e-19 82.8
Msa0159420 MtrunA17_Chr2g0310571 37.333 150 67 5 8 155 20 144 8.41e-19 78.6
Msa0159420 MtrunA17_Chr4g0014291 61.818 55 20 1 98 151 1 55 1.42e-18 74.7
Msa0159420 MtrunA17_Chr8g0335711 34.286 140 80 4 10 143 13 146 1.75e-18 80.1
Msa0159420 MtrunA17_Chr7g0247861 34.722 144 84 4 8 146 18 156 7.16e-18 79.0
Msa0159420 MtrunA17_Chr8g0392111 70.690 58 13 2 1 57 1 55 8.59e-18 72.8
Msa0159420 MtrunA17_Chr8g0335731 32.414 145 85 4 10 147 13 151 8.75e-18 76.3
Msa0159420 MtrunA17_Chr2g0330971 32.667 150 92 4 1 146 4 148 3.94e-17 76.3
Msa0159420 MtrunA17_Chr2g0330981 33.793 145 80 5 10 146 13 149 5.81e-17 75.9
Msa0159420 MtrunA17_Chr8g0335691 32.877 146 87 4 8 147 11 151 6.35e-17 75.5
Msa0159420 MtrunA17_Chr8g0361921 58.333 60 24 1 96 154 19 78 3.28e-16 69.3
Msa0159420 MtrunA17_Chr4g0074671 39.286 112 58 2 5 112 9 114 8.16e-16 69.3
Msa0159420 MtrunA17_Chr7g0228441 34.043 141 82 6 1 135 1 136 1.54e-15 71.2
Msa0159420 MtrunA17_Chr1g0211001 30.723 166 63 5 8 128 1 159 2.73e-15 71.2
Msa0159420 MtrunA17_Chr8g0348821 29.932 147 93 3 8 149 18 159 1.56e-14 69.7
Msa0159420 MtrunA17_Chr4g0014281 61.111 54 21 0 94 147 1 54 1.61e-13 62.8
Msa0159420 MtrunA17_Chr3g0103481 33.684 95 56 2 53 146 1 89 3.28e-13 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159420 AT5G42190.1 77.059 170 23 1 3 156 2 171 2.54e-85 248
Msa0159420 AT1G20140.1 72.393 163 38 2 1 156 1 163 3.78e-83 242
Msa0159420 AT1G75950.1 77.987 159 29 1 4 156 2 160 3.89e-83 242
Msa0159420 AT2G25700.1 68.712 163 44 2 1 156 1 163 1.92e-78 230
Msa0159420 AT4G34210.1 70.130 154 42 2 4 156 2 152 1.85e-76 224
Msa0159420 AT4G34470.1 69.481 154 43 2 4 156 2 152 1.15e-75 223
Msa0159420 AT3G21860.1 67.097 155 45 3 4 156 2 152 5.05e-68 203
Msa0159420 AT3G21850.1 64.516 155 50 3 4 156 2 153 7.31e-67 200
Msa0159420 AT3G60010.1 64.331 157 47 3 5 156 2 154 2.18e-66 199
Msa0159420 AT2G03170.1 62.338 154 51 2 4 156 2 149 2.36e-63 191
Msa0159420 AT2G03190.1 55.422 166 61 3 4 156 2 167 7.51e-59 181
Msa0159420 AT3G60020.1 57.692 156 54 3 7 156 4 153 5.81e-57 175
Msa0159420 AT3G21830.1 56.494 154 63 2 4 156 2 152 1.08e-55 172
Msa0159420 AT2G03160.1 48.677 189 61 3 4 156 2 190 1.09e-55 174
Msa0159420 AT2G20160.1 54.902 153 63 2 4 155 2 149 2.15e-53 166
Msa0159420 AT3G25650.1 57.229 166 58 5 4 156 2 167 3.19e-53 167
Msa0159420 AT1G10230.1 56.774 155 64 2 4 155 2 156 4.94e-52 163
Msa0159420 AT3G21840.1 58.333 120 44 3 4 121 2 117 1.78e-37 125
Msa0159420 AT3G53060.1 66.279 86 22 3 29 113 1 80 8.54e-32 109
Msa0159420 AT3G61415.2 33.333 144 86 4 8 146 18 156 2.54e-16 74.7
Msa0159420 AT3G61415.1 33.333 144 86 4 8 146 18 156 2.65e-16 74.7
Msa0159420 AT2G45950.5 31.944 144 88 4 8 146 18 156 3.80e-16 74.3
Msa0159420 AT2G45950.2 31.944 144 88 4 8 146 18 156 3.80e-16 74.3
Msa0159420 AT2G45950.3 31.944 144 88 4 8 146 18 156 3.89e-16 74.3
Msa0159420 AT2G45950.1 31.944 144 88 4 8 146 18 156 3.89e-16 74.3
Msa0159420 AT2G45950.4 31.944 144 88 4 8 146 18 156 3.89e-16 74.3

Find 52 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAGTACTTGTTTATCTTT+TGG 0.200183 1_4:+29879858 Msa0159420:three_prime_UTR
GATAGGGTTTCGTTGAAAAT+TGG 0.203682 1_4:-29877735 None:intergenic
AAGTTACTCGCTGTTAAAAT+TGG 0.311029 1_4:+29880059 Msa0159420:three_prime_UTR
CGTAGTAATCGTGATGTGAT+AGG 0.351263 1_4:-29877752 None:intergenic
CTTGAATATCAAGAGCTTGC+TGG 0.358298 1_4:+29879609 Msa0159420:CDS
GGTCGATGAAGCGGTTGCTT+TGG 0.364221 1_4:+29877831 Msa0159420:CDS
CACTTTGCTGAATAACCCTT+TGG 0.365451 1_4:-29880088 None:intergenic
CAACGTTACCAGCAAGATCT+TGG 0.386921 1_4:+29877915 Msa0159420:CDS
CGAGGATGAGCTTAAGTCTT+GGG 0.409245 1_4:+29877999 Msa0159420:CDS
CACCTTCGCCAAGATCTTGC+TGG 0.436666 1_4:-29877923 None:intergenic
CGAGTTCGTGAAGGTTGATC+AGG 0.440775 1_4:+29878026 Msa0159420:CDS
AATGTCTTGCGGATCTCCTC+TGG 0.448832 1_4:-29879676 None:intergenic
GACTTAAGCTCATCCTCGTT+AGG 0.455978 1_4:-29877994 None:intergenic
TGATCATGTCTGCAACAGTC+TGG 0.461006 1_4:-29879642 None:intergenic
AAGATCTTGCTGGTAACGTT+GGG 0.477857 1_4:-29877913 None:intergenic
GATGAGCTAATGCGTTGGTT+TGG 0.479992 1_4:+29879989 Msa0159420:three_prime_UTR
CATGTCTGCAACAGTCTGGC+AGG 0.496105 1_4:-29879638 None:intergenic
GAGTGTTGACTATGTTTCAC+TGG 0.496791 1_4:+29879894 Msa0159420:three_prime_UTR
TGATTTCTCACCTGAGGAAG+AGG 0.505723 1_4:+29879711 Msa0159420:CDS
TGCTGGTAACGTTGGGAAGA+GGG 0.508109 1_4:-29877906 None:intergenic
TTAAAATTGGTACTAACCAA+AGG 0.509212 1_4:+29880072 Msa0159420:three_prime_UTR
TAAAATTGGTACTAACCAAA+GGG 0.519234 1_4:+29880073 Msa0159420:three_prime_UTR
TTGCTGGTAACGTTGGGAAG+AGG 0.523250 1_4:-29877907 None:intergenic
TAATGCGTTGGTTTGGCATG+AGG 0.525286 1_4:+29879996 Msa0159420:three_prime_UTR
CAAGATCTTGCTGGTAACGT+TGG 0.530853 1_4:-29877914 None:intergenic
CGAACTTCCTCCTCTTCCTC+AGG 0.533819 1_4:-29879721 None:intergenic
GACTGTTGCAGACATGATCA+AGG 0.534990 1_4:+29879645 Msa0159420:CDS
ACGAGGATGAGCTTAAGTCT+TGG 0.544399 1_4:+29877998 Msa0159420:CDS
AATGCGTTGGTTTGGCATGA+GGG 0.544945 1_4:+29879997 Msa0159420:three_prime_UTR
AGCATCATTCAAATGCCCAT+TGG 0.546088 1_4:-29879753 None:intergenic
AGGAAGAGGAGGAAGTTCGT+AGG 0.548370 1_4:+29879725 Msa0159420:CDS
GGAAGAGGAGGAAGTTCGTA+GGG 0.553401 1_4:+29879726 Msa0159420:CDS
AGTTCGTAGGGAAAACCAAT+GGG 0.562143 1_4:+29879738 Msa0159420:CDS
AAGTTCGTAGGGAAAACCAA+TGG 0.564773 1_4:+29879737 Msa0159420:CDS
GTAGTAATCGTGATGTGATA+GGG 0.567525 1_4:-29877751 None:intergenic
CTGATCAACCTTCACGAACT+CGG 0.567841 1_4:-29878025 None:intergenic
TCTTGATGTTGAATGTCTTG+CGG 0.592623 1_4:-29879687 None:intergenic
TTGGGATTCCGAGTTCGTGA+AGG 0.596084 1_4:+29878017 Msa0159420:CDS
GAAGATGATTGCGCTGACAG+TGG 0.607194 1_4:+29877880 Msa0159420:CDS
GACCTTCGAGGTCGATGAAG+CGG 0.610768 1_4:+29877822 Msa0159420:CDS
TTCCGACGGTGAGACCTTCG+AGG 0.613590 1_4:+29877810 Msa0159420:CDS
ATCACTCTGAAGAGTTCCGA+CGG 0.622850 1_4:+29877796 Msa0159420:CDS
AACCGCTTCATCGACCTCGA+AGG 0.623664 1_4:-29877824 None:intergenic
TACCAGCAAGATCTTGGCGA+AGG 0.627734 1_4:+29877921 Msa0159420:CDS
TTTCTCACCTGAGGAAGAGG+AGG 0.645844 1_4:+29879714 Msa0159420:CDS
CAAGAATGATTTCTCACCTG+AGG 0.653595 1_4:+29879705 Msa0159420:CDS
ACTGTTGCAGACATGATCAA+GGG 0.659883 1_4:+29879646 Msa0159420:CDS
GACCTCGAAGGTCTCACCGT+CGG 0.662584 1_4:-29877812 None:intergenic
TTACTGCTTGAACTTAAGTG+CGG 0.668620 1_4:+29879929 Msa0159420:three_prime_UTR
TGCTGAAGACAAACCTAACG+AGG 0.677963 1_4:+29877981 Msa0159420:CDS
TGATTGATGAGCTAATGCGT+TGG 0.699912 1_4:+29879984 Msa0159420:three_prime_UTR
GATCAAGGGAAAGACACCAG+AGG 0.742039 1_4:+29879660 Msa0159420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTAATTTAAATGGTTA+AGG + chr1_4:29879534-29879553 Msa0159420:intron 10.0%
!! TTATCGTTTATTATTTGATT+TGG + chr1_4:29878106-29878125 Msa0159420:intron 15.0%
!!! TATCGTTTATTATTTGATTT+GGG + chr1_4:29878107-29878126 Msa0159420:intron 15.0%
!! TTTACTAATAATAAAGGATT+AGG + chr1_4:29878249-29878268 Msa0159420:intron 15.0%
!! TTACTAATAATAAAGGATTA+GGG + chr1_4:29878250-29878269 Msa0159420:intron 15.0%
!! GAATAAGAATATCAATTATT+CGG - chr1_4:29878619-29878638 None:intergenic 15.0%
!!! GGTTTATTCTTTTAAATTTT+AGG + chr1_4:29879293-29879312 Msa0159420:intron 15.0%
!!! TACTTAGGTTTTTTTAATAA+TGG - chr1_4:29879372-29879391 None:intergenic 15.0%
!!! TTGACATTTTTTTTCTTTTT+AGG + chr1_4:29879576-29879595 Msa0159420:intron 15.0%
!!! TCGTTTATTTGATTTTGTTT+TGG + chr1_4:29878140-29878159 Msa0159420:intron 20.0%
!! AATCTGAATGAATAGTTTAT+TGG + chr1_4:29878211-29878230 Msa0159420:intron 20.0%
!! AACAAAAGACAAATTGAAAT+TGG - chr1_4:29878336-29878355 None:intergenic 20.0%
!!! ATTTCAATTTGTCTTTTGTT+TGG + chr1_4:29878336-29878355 Msa0159420:intron 20.0%
!!! TTTCAATTTGTCTTTTGTTT+GGG + chr1_4:29878337-29878356 Msa0159420:intron 20.0%
!!! ATGTTTATGTTATGTTTTGT+TGG + chr1_4:29878681-29878700 Msa0159420:intron 20.0%
!! TTCTAATGTATTTGATTAAG+TGG + chr1_4:29878823-29878842 Msa0159420:intron 20.0%
!! TTCATAAATCAATTGATGTT+CGG - chr1_4:29879075-29879094 None:intergenic 20.0%
!! AATAAAGAACATATAAAGCA+TGG + chr1_4:29879131-29879150 Msa0159420:intron 20.0%
!!! TAAGGCTGATTTTATATTAT+TGG + chr1_4:29879552-29879571 Msa0159420:intron 20.0%
! TTTCCGATTCAGAAAAAATT+AGG + chr1_4:29877679-29877698 Msa0159420:five_prime_UTR 25.0%
! TTCCGATTCAGAAAAAATTA+GGG + chr1_4:29877680-29877699 Msa0159420:five_prime_UTR 25.0%
!!! AACCCTAATTTTTTCTGAAT+CGG - chr1_4:29877685-29877704 None:intergenic 25.0%
!!! ATCTTGGTAAGTTTGTTTTA+GGG + chr1_4:29878066-29878085 Msa0159420:intron 25.0%
!!! TGATTTTGTTTTGGAATGTT+TGG + chr1_4:29878149-29878168 Msa0159420:intron 25.0%
!!! GATTTTGTTTTGGAATGTTT+GGG + chr1_4:29878150-29878169 Msa0159420:intron 25.0%
!!! ATTTTGTTTTGGAATGTTTG+GGG + chr1_4:29878151-29878170 Msa0159420:intron 25.0%
!! TAATAAAGGATTAGGGTTTT+TGG + chr1_4:29878257-29878276 Msa0159420:intron 25.0%
!!! TTTGTTTGGGTTGAATTTAA+TGG + chr1_4:29878350-29878369 Msa0159420:intron 25.0%
!!! TTGTTTGGGTTGAATTTAAT+GGG + chr1_4:29878351-29878370 Msa0159420:intron 25.0%
! ACACAACATCAAAACAATAA+TGG - chr1_4:29878456-29878475 None:intergenic 25.0%
!! AGCGATTTTATGTTTTCATT+TGG + chr1_4:29878563-29878582 Msa0159420:intron 25.0%
!!! ATTAAGTGGTTCTAATTTTC+AGG + chr1_4:29878837-29878856 Msa0159420:intron 25.0%
! GTATGATATCATTGTTTGTA+TGG + chr1_4:29879012-29879031 Msa0159420:intron 25.0%
!! ACATTGTCTCAATATTTTGT+TGG - chr1_4:29879183-29879202 None:intergenic 25.0%
! TTAAAAAAACCTAAGTAGTC+TGG + chr1_4:29879375-29879394 Msa0159420:intron 25.0%
!! CTAAGTACTTGTTTATCTTT+TGG + chr1_4:29879858-29879877 Msa0159420:three_prime_UTR 25.0%
! TTAAAATTGGTACTAACCAA+AGG + chr1_4:29880072-29880091 Msa0159420:three_prime_UTR 25.0%
! TAAAATTGGTACTAACCAAA+GGG + chr1_4:29880073-29880092 Msa0159420:three_prime_UTR 25.0%
!! CATCTTGGTAAGTTTGTTTT+AGG + chr1_4:29878065-29878084 Msa0159420:intron 30.0%
!!! TTTTGTTTTGGAATGTTTGG+GGG + chr1_4:29878152-29878171 Msa0159420:intron 30.0%
CCAGAAAACCCTAATAATTT+AGG - chr1_4:29878179-29878198 None:intergenic 30.0%
! CCTAAATTATTAGGGTTTTC+TGG + chr1_4:29878176-29878195 Msa0159420:intron 30.0%
!! AATTATTAGGGTTTTCTGGT+TGG + chr1_4:29878180-29878199 Msa0159420:intron 30.0%
!! TCTTTTTGTTCTTGAGTTGT+AGG + chr1_4:29878499-29878518 Msa0159420:intron 30.0%
TGAGTTGTAGGATATTGTTA+TGG + chr1_4:29878511-29878530 Msa0159420:intron 30.0%
AAATATTCGTCGTGTTTGTT+TGG + chr1_4:29878724-29878743 Msa0159420:intron 30.0%
TACGCGTTTACTGAAAATTA+AGG + chr1_4:29878861-29878880 Msa0159420:intron 30.0%
ACGCGTTTACTGAAAATTAA+GGG + chr1_4:29878862-29878881 Msa0159420:intron 30.0%
ACAACTTCTAGTAAATGTTG+TGG + chr1_4:29879271-29879290 Msa0159420:intron 30.0%
CAACTTCTAGTAAATGTTGT+GGG + chr1_4:29879272-29879291 Msa0159420:intron 30.0%
!! AAATTTTAGGAGCCCAAATA+TGG + chr1_4:29879306-29879325 Msa0159420:intron 30.0%
ACAAACAAACAGCCATATTT+GGG - chr1_4:29879321-29879340 None:intergenic 30.0%
AACAAACAAACAGCCATATT+TGG - chr1_4:29879322-29879341 None:intergenic 30.0%
!! GTGTTGCTGAAAATTGTTTT+TGG + chr1_4:29879343-29879362 Msa0159420:intron 30.0%
AACAATAATCCAGACTACTT+AGG - chr1_4:29879387-29879406 None:intergenic 30.0%
TTGTTGAGGAAATTGAAGTT+TGG + chr1_4:29879402-29879421 Msa0159420:intron 30.0%
TGATGCTCTTCAACAAAAAT+TGG + chr1_4:29879769-29879788 Msa0159420:exon 30.0%
TTCAACAAAAATTGGCATTG+TGG + chr1_4:29879777-29879796 Msa0159420:three_prime_UTR 30.0%
AAGTTACTCGCTGTTAAAAT+TGG + chr1_4:29880059-29880078 Msa0159420:three_prime_UTR 30.0%
!!! AGGGTTTTGATTTGTCGAAA+AGG + chr1_4:29877699-29877718 Msa0159420:five_prime_UTR 35.0%
!!! GGGTTTTGATTTGTCGAAAA+GGG + chr1_4:29877700-29877719 Msa0159420:five_prime_UTR 35.0%
!!! GGTTTTGATTTGTCGAAAAG+GGG + chr1_4:29877701-29877720 Msa0159420:five_prime_UTR 35.0%
GATAGGGTTTCGTTGAAAAT+TGG - chr1_4:29877738-29877757 None:intergenic 35.0%
GTAGTAATCGTGATGTGATA+GGG - chr1_4:29877754-29877773 None:intergenic 35.0%
!! TACGCTTTTTGATCTCATCT+TGG + chr1_4:29878050-29878069 Msa0159420:CDS 35.0%
TTTGGGGGTCCTAAATTATT+AGG + chr1_4:29878167-29878186 Msa0159420:intron 35.0%
TTGGGGGTCCTAAATTATTA+GGG + chr1_4:29878168-29878187 Msa0159420:intron 35.0%
!!! AGGATTAGGGTTTTTGGTTT+TGG + chr1_4:29878263-29878282 Msa0159420:intron 35.0%
!!! GGATTAGGGTTTTTGGTTTT+GGG + chr1_4:29878264-29878283 Msa0159420:intron 35.0%
ACAATTGTTTGTGCCTCTAT+TGG + chr1_4:29878422-29878441 Msa0159420:intron 35.0%
CAATTGTTTGTGCCTCTATT+GGG + chr1_4:29878423-29878442 Msa0159420:intron 35.0%
AGAGAATTTGACATAGTGAG+TGG - chr1_4:29878654-29878673 None:intergenic 35.0%
CACACAATCACTTAAAGAAG+TGG + chr1_4:29878800-29878819 Msa0159420:intron 35.0%
TGGAACTATAGTGAACTGAA+TGG + chr1_4:29879032-29879051 Msa0159420:intron 35.0%
ATGAAATTGAACTAGCTGCA+AGG + chr1_4:29879090-29879109 Msa0159420:intron 35.0%
TGAAATTGAACTAGCTGCAA+GGG + chr1_4:29879091-29879110 Msa0159420:intron 35.0%
AAGCATGGACTTACTGTTAA+TGG + chr1_4:29879146-29879165 Msa0159420:intron 35.0%
! TTGTACTATGTCACTTGTCA+AGG + chr1_4:29879212-29879231 Msa0159420:intron 35.0%
! ACACTATCGATTAGAAGTGT+CGG + chr1_4:29879244-29879263 Msa0159420:intron 35.0%
AGTAGTCTGGATTATTGTTG+AGG + chr1_4:29879388-29879407 Msa0159420:intron 35.0%
CGAGAGAATGTAAAATGCAA+TGG - chr1_4:29879487-29879506 None:intergenic 35.0%
ATAAAAACAACACACTGCAG+TGG - chr1_4:29879518-29879537 None:intergenic 35.0%
TCTTGATGTTGAATGTCTTG+CGG - chr1_4:29879690-29879709 None:intergenic 35.0%
TTACTGCTTGAACTTAAGTG+CGG + chr1_4:29879929-29879948 Msa0159420:three_prime_UTR 35.0%
CGTAGTAATCGTGATGTGAT+AGG - chr1_4:29877755-29877774 None:intergenic 40.0%
! AAGATCTTGCTGGTAACGTT+GGG - chr1_4:29877916-29877935 None:intergenic 40.0%
AATGGCATATAGCCCAATAG+AGG - chr1_4:29878438-29878457 None:intergenic 40.0%
AAAAAGATAGCCACAAGAGC+AGG - chr1_4:29878486-29878505 None:intergenic 40.0%
! TATGTCACTTGTCAAGGTTC+TGG + chr1_4:29879218-29879237 Msa0159420:intron 40.0%
CTTGAATATCAAGAGCTTGC+TGG + chr1_4:29879609-29879628 Msa0159420:CDS 40.0%
ACTGTTGCAGACATGATCAA+GGG + chr1_4:29879646-29879665 Msa0159420:CDS 40.0%
CAAGAATGATTTCTCACCTG+AGG + chr1_4:29879705-29879724 Msa0159420:CDS 40.0%
AAGTTCGTAGGGAAAACCAA+TGG + chr1_4:29879737-29879756 Msa0159420:CDS 40.0%
AGTTCGTAGGGAAAACCAAT+GGG + chr1_4:29879738-29879757 Msa0159420:CDS 40.0%
AGCATCATTCAAATGCCCAT+TGG - chr1_4:29879756-29879775 None:intergenic 40.0%
!! GAGTGTTGACTATGTTTCAC+TGG + chr1_4:29879894-29879913 Msa0159420:three_prime_UTR 40.0%
TGATTGATGAGCTAATGCGT+TGG + chr1_4:29879984-29880003 Msa0159420:three_prime_UTR 40.0%
! ATCACTCTGAAGAGTTCCGA+CGG + chr1_4:29877796-29877815 Msa0159420:CDS 45.0%
! CAAGATCTTGCTGGTAACGT+TGG - chr1_4:29877917-29877936 None:intergenic 45.0%
CAACGTTACCAGCAAGATCT+TGG + chr1_4:29877915-29877934 Msa0159420:CDS 45.0%
TGCTGAAGACAAACCTAACG+AGG + chr1_4:29877981-29878000 Msa0159420:CDS 45.0%
GACTTAAGCTCATCCTCGTT+AGG - chr1_4:29877997-29878016 None:intergenic 45.0%
ACGAGGATGAGCTTAAGTCT+TGG + chr1_4:29877998-29878017 Msa0159420:CDS 45.0%
CGAGGATGAGCTTAAGTCTT+GGG + chr1_4:29877999-29878018 Msa0159420:CDS 45.0%
CTGATCAACCTTCACGAACT+CGG - chr1_4:29878028-29878047 None:intergenic 45.0%
TGTTGAATTGCCTGCTCTTG+TGG + chr1_4:29878473-29878492 Msa0159420:intron 45.0%
TGATCATGTCTGCAACAGTC+TGG - chr1_4:29879645-29879664 None:intergenic 45.0%
GACTGTTGCAGACATGATCA+AGG + chr1_4:29879645-29879664 Msa0159420:CDS 45.0%
TGATTTCTCACCTGAGGAAG+AGG + chr1_4:29879711-29879730 Msa0159420:CDS 45.0%
!! GATGAGCTAATGCGTTGGTT+TGG + chr1_4:29879989-29880008 Msa0159420:three_prime_UTR 45.0%
!! TAATGCGTTGGTTTGGCATG+AGG + chr1_4:29879996-29880015 Msa0159420:three_prime_UTR 45.0%
!! AATGCGTTGGTTTGGCATGA+GGG + chr1_4:29879997-29880016 Msa0159420:three_prime_UTR 45.0%
!! ATTATTAGTAAATAAAAAAT+AGG - chr1_4:29878241-29878260 None:intergenic 5.0%
!!! TTTTTATTTACTAATAATAA+AGG + chr1_4:29878243-29878262 Msa0159420:intron 5.0%
!!! TTGTTTTTATTTAATTTAAA+TGG + chr1_4:29879528-29879547 Msa0159420:intron 5.0%
! GAAGATGATTGCGCTGACAG+TGG + chr1_4:29877880-29877899 Msa0159420:CDS 50.0%
! TGCTGGTAACGTTGGGAAGA+GGG - chr1_4:29877909-29877928 None:intergenic 50.0%
! TTGCTGGTAACGTTGGGAAG+AGG - chr1_4:29877910-29877929 None:intergenic 50.0%
TACCAGCAAGATCTTGGCGA+AGG + chr1_4:29877921-29877940 Msa0159420:CDS 50.0%
TTGGGATTCCGAGTTCGTGA+AGG + chr1_4:29878017-29878036 Msa0159420:CDS 50.0%
! CGAGTTCGTGAAGGTTGATC+AGG + chr1_4:29878026-29878045 Msa0159420:CDS 50.0%
GAACTAGCTGCAAGGGATCT+TGG + chr1_4:29879098-29879117 Msa0159420:intron 50.0%
GATCAAGGGAAAGACACCAG+AGG + chr1_4:29879660-29879679 Msa0159420:CDS 50.0%
AATGTCTTGCGGATCTCCTC+TGG - chr1_4:29879679-29879698 None:intergenic 50.0%
TTTCTCACCTGAGGAAGAGG+AGG + chr1_4:29879714-29879733 Msa0159420:CDS 50.0%
AGGAAGAGGAGGAAGTTCGT+AGG + chr1_4:29879725-29879744 Msa0159420:CDS 50.0%
GGAAGAGGAGGAAGTTCGTA+GGG + chr1_4:29879726-29879745 Msa0159420:CDS 50.0%
GACCTTCGAGGTCGATGAAG+CGG + chr1_4:29877822-29877841 Msa0159420:CDS 55.0%
AACCGCTTCATCGACCTCGA+AGG - chr1_4:29877827-29877846 None:intergenic 55.0%
GGTCGATGAAGCGGTTGCTT+TGG + chr1_4:29877831-29877850 Msa0159420:CDS 55.0%
CACCTTCGCCAAGATCTTGC+TGG - chr1_4:29877926-29877945 None:intergenic 55.0%
CATGTCTGCAACAGTCTGGC+AGG - chr1_4:29879641-29879660 None:intergenic 55.0%
CGAACTTCCTCCTCTTCCTC+AGG - chr1_4:29879724-29879743 None:intergenic 55.0%
TTCCGACGGTGAGACCTTCG+AGG + chr1_4:29877810-29877829 Msa0159420:CDS 60.0%
GACCTCGAAGGTCTCACCGT+CGG - chr1_4:29877815-29877834 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 29877648 29880104 29877648 ID=Msa0159420;Name=Msa0159420
chr1_4 mRNA 29877648 29880104 29877648 ID=Msa0159420-mRNA-1;Parent=Msa0159420;Name=Msa0159420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=127|1|1|1|1|1|2|333|156
chr1_4 exon 29877648 29878071 29877648 ID=Msa0159420-mRNA-1:exon:9567;Parent=Msa0159420-mRNA-1
chr1_4 exon 29879598 29880104 29879598 ID=Msa0159420-mRNA-1:exon:9568;Parent=Msa0159420-mRNA-1
chr1_4 five_prime_UTR 29877648 29877774 29877648 ID=Msa0159420-mRNA-1:five_prime_utr;Parent=Msa0159420-mRNA-1
chr1_4 CDS 29877775 29878071 29877775 ID=Msa0159420-mRNA-1:cds;Parent=Msa0159420-mRNA-1
chr1_4 CDS 29879598 29879771 29879598 ID=Msa0159420-mRNA-1:cds;Parent=Msa0159420-mRNA-1
chr1_4 three_prime_UTR 29879772 29880104 29879772 ID=Msa0159420-mRNA-1:three_prime_utr;Parent=Msa0159420-mRNA-1
Gene Sequence

>Msa0159420

ATGTCTTCAACAACAAGAAAGATCACTCTGAAGAGTTCCGACGGTGAGACCTTCGAGGTCGATGAAGCGGTTGCTTTGGAATCGCAGACGATCAAGCATATGATCGAAGATGATTGCGCTGACAGTGGAATCCCTCTTCCCAACGTTACCAGCAAGATCTTGGCGAAGGTGATTGAGTATTGCAAGAAGCATGTTGACGCTGCTGCTGCTGAAGACAAACCTAACGAGGATGAGCTTAAGTCTTGGGATTCCGAGTTCGTGAAGGTTGATCAGGCTACGCTTTTTGATCTCATCTTGGCTGCTAATTACTTGAATATCAAGAGCTTGCTGGATCTTACCTGCCAGACTGTTGCAGACATGATCAAGGGAAAGACACCAGAGGAGATCCGCAAGACATTCAACATCAAGAATGATTTCTCACCTGAGGAAGAGGAGGAAGTTCGTAGGGAAAACCAATGGGCATTTGAATGA

Protein sequence

>Msa0159420

MSSTTRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVDAAAAEDKPNEDELKSWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPEEEEEVRRENQWAFE*