Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416520 | XP_003600874.1 | 77.632 | 152 | 2 | 1 | 1 | 120 | 1 | 152 | 1.63e-76 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416520 | sp|P59234|YIPL_SOLTU | 72.727 | 99 | 27 | 0 | 22 | 120 | 31 | 129 | 2.07e-50 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416520 | G7JB73 | 77.632 | 152 | 2 | 1 | 1 | 120 | 1 | 152 | 7.80e-77 | 233 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014920 | Msa0416520 | 0.801743 | 7.796414e-49 | -8.615850e-47 |
| Msa0101810 | Msa0416520 | -0.822242 | 2.630188e-53 | -8.615850e-47 |
| Msa0105420 | Msa0416520 | 0.806804 | 6.883843e-50 | -8.615850e-47 |
| Msa0179280 | Msa0416520 | 0.816986 | 4.166755e-52 | -8.615850e-47 |
| Msa0190830 | Msa0416520 | 0.819353 | 1.214383e-52 | -8.615850e-47 |
| Msa0233190 | Msa0416520 | 0.812464 | 4.183612e-51 | -8.615850e-47 |
| Msa0416520 | Msa0437710 | 0.840704 | 7.408765e-58 | -8.615850e-47 |
| Msa0416520 | Msa0509970 | 0.839798 | 1.277437e-57 | -8.615850e-47 |
| Msa0416520 | Msa0657670 | 0.803442 | 3.479992e-49 | -8.615850e-47 |
| Msa0416520 | Msa0684530 | 0.804790 | 1.824282e-49 | -8.615850e-47 |
| Msa0416520 | Msa0725220 | 0.805942 | 1.046406e-49 | -8.615850e-47 |
| Msa0416520 | Msa1008490 | 0.821995 | 3.000683e-53 | -8.615850e-47 |
| Msa0416520 | Msa1009000 | 0.807766 | 4.306236e-50 | -8.615850e-47 |
| Msa0416520 | Msa1099030 | 0.803671 | 3.118253e-49 | -8.615850e-47 |
| Msa0416520 | Msa1104000 | 0.818838 | 1.590329e-52 | -8.615850e-47 |
| Msa0416520 | Msa1271300 | 0.806744 | 7.088838e-50 | -8.615850e-47 |
| Msa0416520 | Msa1312560 | 0.808353 | 3.229468e-50 | -8.615850e-47 |
| Msa0416520 | Msa1329990 | 0.803750 | 3.003826e-49 | -8.615850e-47 |
| Msa0416520 | Msa1385620 | 0.804946 | 1.692236e-49 | -8.615850e-47 |
| Msa0416520 | Msa1438270 | 0.820124 | 8.096188e-53 | -8.615850e-47 |
| Msa0416520 | Msa1454290 | -0.806347 | 8.599224e-50 | -8.615850e-47 |
| Msa0416520 | Msa1465900 | 0.817316 | 3.512044e-52 | -8.615850e-47 |
| Msa0311580 | Msa0416520 | 0.821276 | 4.401470e-53 | -8.615850e-47 |
| Msa0320740 | Msa0416520 | 0.820918 | 5.320531e-53 | -8.615850e-47 |
| Msa0342200 | Msa0416520 | 0.800301 | 1.536724e-48 | -8.615850e-47 |
| Msa0363310 | Msa0416520 | 0.811100 | 8.289573e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416520 | MtrunA17_Chr3g0113291 | 77.632 | 152 | 2 | 1 | 1 | 120 | 1 | 152 | 1.50e-80 | 233 |
| Msa0416520 | MtrunA17_Chr5g0436971 | 76.531 | 98 | 23 | 0 | 22 | 119 | 31 | 128 | 8.62e-53 | 162 |
| Msa0416520 | MtrunA17_Chr7g0242231 | 73.494 | 83 | 22 | 0 | 22 | 104 | 31 | 113 | 5.69e-42 | 134 |
| Msa0416520 | MtrunA17_Chr4g0046851 | 52.475 | 101 | 46 | 1 | 19 | 119 | 28 | 126 | 4.70e-33 | 112 |
| Msa0416520 | MtrunA17_Chr2g0316921 | 55.102 | 98 | 44 | 0 | 22 | 119 | 31 | 128 | 7.14e-33 | 111 |
| Msa0416520 | MtrunA17_Chr8g0360291 | 53.684 | 95 | 44 | 0 | 25 | 119 | 34 | 128 | 1.24e-30 | 106 |
| Msa0416520 | MtrunA17_Chr8g0346501 | 51.250 | 80 | 39 | 0 | 22 | 101 | 27 | 106 | 1.07e-26 | 95.5 |
| Msa0416520 | MtrunA17_Chr2g0316891 | 43.750 | 112 | 57 | 1 | 8 | 119 | 21 | 126 | 8.12e-26 | 94.0 |
| Msa0416520 | MtrunA17_Chr3g0127211 | 50.667 | 75 | 37 | 0 | 22 | 96 | 27 | 101 | 3.56e-24 | 89.0 |
| Msa0416520 | MtrunA17_Chr1g0188931 | 45.333 | 75 | 41 | 0 | 22 | 96 | 27 | 101 | 7.10e-23 | 85.9 |
| Msa0416520 | MtrunA17_Chr1g0188951 | 51.852 | 54 | 26 | 0 | 39 | 92 | 1 | 54 | 9.69e-17 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416520 | AT2G40110.1 | 78.788 | 99 | 20 | 1 | 22 | 119 | 31 | 129 | 4.35e-55 | 168 |
| Msa0416520 | AT3G11230.1 | 68.367 | 98 | 31 | 0 | 22 | 119 | 31 | 128 | 4.55e-46 | 145 |
| Msa0416520 | AT3G11230.2 | 68.367 | 98 | 31 | 0 | 22 | 119 | 64 | 161 | 8.05e-46 | 145 |
| Msa0416520 | AT3G08990.2 | 54.386 | 114 | 52 | 0 | 6 | 119 | 15 | 128 | 7.65e-42 | 134 |
| Msa0416520 | AT3G08990.1 | 54.386 | 114 | 52 | 0 | 6 | 119 | 15 | 128 | 7.65e-42 | 134 |
| Msa0416520 | AT3G08990.3 | 54.386 | 114 | 52 | 0 | 6 | 119 | 15 | 128 | 7.65e-42 | 134 |
| Msa0416520 | AT3G55890.4 | 57.522 | 113 | 44 | 1 | 1 | 109 | 6 | 118 | 9.18e-42 | 134 |
| Msa0416520 | AT3G55890.1 | 57.522 | 113 | 44 | 1 | 1 | 109 | 6 | 118 | 9.18e-42 | 134 |
| Msa0416520 | AT2G40110.2 | 82.192 | 73 | 13 | 0 | 22 | 94 | 31 | 103 | 3.01e-41 | 132 |
| Msa0416520 | AT3G55890.3 | 59.375 | 96 | 35 | 1 | 1 | 92 | 6 | 101 | 1.10e-35 | 118 |
| Msa0416520 | AT3G55890.2 | 59.375 | 96 | 35 | 1 | 1 | 92 | 6 | 101 | 1.10e-35 | 118 |
| Msa0416520 | AT3G11230.4 | 73.611 | 72 | 19 | 0 | 22 | 93 | 31 | 102 | 5.41e-35 | 116 |
| Msa0416520 | AT3G11230.3 | 73.611 | 72 | 19 | 0 | 22 | 93 | 64 | 135 | 1.23e-34 | 117 |
| Msa0416520 | AT5G53940.1 | 56.250 | 96 | 42 | 0 | 24 | 119 | 33 | 128 | 1.43e-33 | 114 |
| Msa0416520 | AT2G40110.4 | 81.132 | 53 | 10 | 0 | 22 | 74 | 31 | 83 | 6.01e-28 | 98.6 |
| Msa0416520 | AT2G40110.3 | 81.132 | 53 | 10 | 0 | 22 | 74 | 31 | 83 | 6.01e-28 | 98.6 |
| Msa0416520 | AT4G27745.2 | 49.367 | 79 | 40 | 0 | 22 | 100 | 27 | 105 | 5.30e-24 | 89.0 |
| Msa0416520 | AT4G27745.3 | 49.367 | 79 | 40 | 0 | 22 | 100 | 27 | 105 | 5.30e-24 | 89.0 |
| Msa0416520 | AT4G27745.1 | 49.367 | 79 | 40 | 0 | 22 | 100 | 27 | 105 | 5.30e-24 | 89.0 |
| Msa0416520 | AT4G27745.4 | 49.367 | 79 | 40 | 0 | 22 | 100 | 27 | 105 | 5.30e-24 | 89.0 |
| Msa0416520 | AT4G27740.1 | 38.356 | 73 | 45 | 0 | 25 | 97 | 30 | 102 | 6.51e-14 | 63.2 |
Find 35 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCCTTCCTTGTACTTT+TGG | 0.231498 | 3_2:+63421633 | None:intergenic |
| AAAATCAACCAACCAAGTTT+TGG | 0.316971 | 3_2:+63420789 | None:intergenic |
| TTGAATCAGTTGTTAATTGT+TGG | 0.349595 | 3_2:-63420741 | Msa0416520:intron |
| AGGCTTTCTTCATCCAACTA+TGG | 0.372826 | 3_2:+63420913 | None:intergenic |
| GAGATAAGCTTTCCCATGTC+TGG | 0.391588 | 3_2:+63422440 | None:intergenic |
| GAGGAGAGACCGATGATGAC+TGG | 0.424174 | 3_2:-63421821 | Msa0416520:CDS |
| GTCCTGATGGTAGCAATTAT+CGG | 0.430362 | 3_2:-63421198 | Msa0416520:CDS |
| AGAGATACATCACATGATAC+TGG | 0.437426 | 3_2:+63420888 | None:intergenic |
| GACAGCGTGAATGTTTCTCT+TGG | 0.452417 | 3_2:-63421851 | Msa0416520:intron |
| TCGATTTGTAGCACCATAGT+TGG | 0.457460 | 3_2:-63420926 | Msa0416520:intron |
| GTGGGTTGTGGATCGATTGT+GGG | 0.474305 | 3_2:-63421770 | Msa0416520:CDS |
| ATGTGAAACACTGACACAAC+AGG | 0.488134 | 3_2:-63420699 | Msa0416520:three_prime_UTR |
| TATTATAACCAAAACTTGGT+TGG | 0.495371 | 3_2:-63420797 | Msa0416520:three_prime_UTR |
| ATCCGATAATTGCTACCATC+AGG | 0.497420 | 3_2:+63421196 | None:intergenic |
| TTGGGCAGGTACAAGGTATC+AGG | 0.498809 | 3_2:-63421220 | Msa0416520:intron |
| ATTAGGAATGGCGAGATGAA+TGG | 0.499885 | 3_2:+63421127 | None:intergenic |
| TGTGGGTTGTGGATCGATTG+TGG | 0.505248 | 3_2:-63421771 | Msa0416520:CDS |
| TGTGTTATTGGGCAGGTACA+AGG | 0.508400 | 3_2:-63421227 | Msa0416520:intron |
| GTATTATTATAACCAAAACT+TGG | 0.510568 | 3_2:-63420801 | Msa0416520:three_prime_UTR |
| GTTGTGGATCGATTGTGGGT+TGG | 0.527280 | 3_2:-63421766 | Msa0416520:CDS |
| TAGACTTTCCACTCCAGACA+TGG | 0.535000 | 3_2:-63422453 | Msa0416520:CDS |
| AACAATGGAGCACATGTTGG+CGG | 0.552605 | 3_2:-63421172 | Msa0416520:CDS |
| AAGGAAAGTCTGTGCTTGAA+AGG | 0.559471 | 3_2:-63421619 | Msa0416520:intron |
| ATCAACAATGGAGCACATGT+TGG | 0.564033 | 3_2:-63421175 | Msa0416520:CDS |
| AGCAATTATCGGATCAACAA+TGG | 0.565705 | 3_2:-63421187 | Msa0416520:CDS |
| AAAGACCAAAAGTACAAGGA+AGG | 0.567472 | 3_2:-63421638 | Msa0416520:CDS |
| AGGAGAGACCGATGATGACT+GGG | 0.570959 | 3_2:-63421820 | Msa0416520:CDS |
| AAGGAATGTACAATTAGGAA+TGG | 0.574828 | 3_2:+63421115 | None:intergenic |
| AGACTTTCCACTCCAGACAT+GGG | 0.598992 | 3_2:-63422452 | Msa0416520:CDS |
| AAGCTTTCCCATGTCTGGAG+TGG | 0.608663 | 3_2:+63422445 | None:intergenic |
| TACAAGGTATCAGGTCCTGA+TGG | 0.616196 | 3_2:-63421211 | Msa0416520:CDS |
| GTATGCAACCCAGTCATCAT+CGG | 0.616477 | 3_2:+63421812 | None:intergenic |
| TGTTTCTCTTGGCGAAACAG+AGG | 0.620615 | 3_2:-63421840 | Msa0416520:CDS |
| TACATCACATGATACTGGAA+AGG | 0.634635 | 3_2:+63420893 | None:intergenic |
| TGCAGTTGTTGTAAGAAACG+TGG | 0.670568 | 3_2:+63423561 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATGGTAATTTTATAAT+TGG | - | chr3_2:63421721-63421740 | Msa0416520:intron | 10.0% |
| !!! | TTTATGGTAATTTTATAATT+GGG | - | chr3_2:63421722-63421741 | Msa0416520:intron | 10.0% |
| !!! | TTATGGTAATTTTATAATTG+GGG | - | chr3_2:63421723-63421742 | Msa0416520:intron | 15.0% |
| !!! | ATGTTTTATTTCAATTTCTT+AGG | + | chr3_2:63421900-63421919 | None:intergenic | 15.0% |
| !!! | TTTTAAATTAGAGTTACTTA+TGG | - | chr3_2:63422242-63422261 | Msa0416520:intron | 15.0% |
| !!! | AGATTAAAAACTAACATTTT+CGG | + | chr3_2:63422322-63422341 | None:intergenic | 15.0% |
| !!! | TAAGATGTTTTAATAAACAT+GGG | + | chr3_2:63422867-63422886 | None:intergenic | 15.0% |
| !!! | ATAAGATGTTTTAATAAACA+TGG | + | chr3_2:63422868-63422887 | None:intergenic | 15.0% |
| !!! | TTTTTTCGCTATTATTTTTC+TGG | - | chr3_2:63420973-63420992 | Msa0416520:intron | 20.0% |
| !!! | TTTTTCGCTATTATTTTTCT+GGG | - | chr3_2:63420974-63420993 | Msa0416520:intron | 20.0% |
| !! | TTATATAATATGTGGCAAAA+AGG | + | chr3_2:63421368-63421387 | None:intergenic | 20.0% |
| !! | ATGTGAACTTATATAATATG+TGG | + | chr3_2:63421376-63421395 | None:intergenic | 20.0% |
| !!! | TTAGTCTTTTTGTTTTCTTT+TGG | - | chr3_2:63421696-63421715 | Msa0416520:intron | 20.0% |
| !!! | TGTTTTCTTTTGGAAATTTA+TGG | - | chr3_2:63421706-63421725 | Msa0416520:intron | 20.0% |
| !! | AAAAACTCAATTAAGAATTC+GGG | + | chr3_2:63421749-63421768 | None:intergenic | 20.0% |
| !! | GAAAAACTCAATTAAGAATT+CGG | + | chr3_2:63421750-63421769 | None:intergenic | 20.0% |
| !!! | AAAGTCTAAAATAATCACAT+GGG | + | chr3_2:63421806-63421825 | None:intergenic | 20.0% |
| !!! | ACTTGATAGATAAATTTTAG+CGG | + | chr3_2:63422210-63422229 | None:intergenic | 20.0% |
| !! | AATATGAAATCATATCATTG+CGG | - | chr3_2:63422268-63422287 | Msa0416520:intron | 20.0% |
| !! | CAAAAATATATTGTAACAAG+AGG | + | chr3_2:63422349-63422368 | None:intergenic | 20.0% |
| !! | TCAATTATATCCTTAAAAAG+AGG | + | chr3_2:63422378-63422397 | None:intergenic | 20.0% |
| !! | AATCTAAACCATTACATAAT+TGG | + | chr3_2:63423016-63423035 | None:intergenic | 20.0% |
| !!! | ATTAGATGAATTGTGTTATT+GGG | - | chr3_2:63423033-63423052 | Msa0416520:intron | 20.0% |
| !! | TTTATATTCGAACTTCTAAT+TGG | - | chr3_2:63423315-63423334 | Msa0416520:intron | 20.0% |
| !! | TTATATTCGAACTTCTAATT+GGG | - | chr3_2:63423316-63423335 | Msa0416520:intron | 20.0% |
| !! | GTATTATTATAACCAAAACT+TGG | - | chr3_2:63423470-63423489 | Msa0416520:intron | 20.0% |
| ! | TGAGATAAAGAAGAAATGAA+TGG | + | chr3_2:63420781-63420800 | None:intergenic | 25.0% |
| ! | TTGCACTGTATTTATTATCT+TGG | - | chr3_2:63421193-63421212 | Msa0416520:CDS | 25.0% |
| ! | ACTGTATTTATTATCTTGGT+TGG | - | chr3_2:63421197-63421216 | Msa0416520:CDS | 25.0% |
| ! | ACATTGAGTAGTAGTATTAT+AGG | - | chr3_2:63421232-63421251 | Msa0416520:intron | 25.0% |
| ! | AGTAGTATTATAGGCTAAAT+TGG | - | chr3_2:63421241-63421260 | Msa0416520:intron | 25.0% |
| !!! | GATTATTTTAGACTTCAAGT+TGG | - | chr3_2:63421280-63421299 | Msa0416520:intron | 25.0% |
| ! | ATATTTACAAAGTTTCAAGC+TGG | - | chr3_2:63421309-63421328 | Msa0416520:intron | 25.0% |
| ! | TTAGTAACGTTACAATAAGT+TGG | - | chr3_2:63421341-63421360 | Msa0416520:intron | 25.0% |
| !! | ATATCATTCACTAGTATTGA+GGG | + | chr3_2:63421622-63421641 | None:intergenic | 25.0% |
| !! | AAGTCTAAAATAATCACATG+GGG | + | chr3_2:63421805-63421824 | None:intergenic | 25.0% |
| !! | GAAAGTCTAAAATAATCACA+TGG | + | chr3_2:63421807-63421826 | None:intergenic | 25.0% |
| !!! | ATTTTAGCGGTTAACTTTTT+AGG | + | chr3_2:63422197-63422216 | None:intergenic | 25.0% |
| ! | GTAACTCTAATTTAAAAGCT+TGG | + | chr3_2:63422239-63422258 | None:intergenic | 25.0% |
| ! | TGGAAATATGTAAGATTATG+AGG | - | chr3_2:63422525-63422544 | Msa0416520:intron | 25.0% |
| ! | GACATCACTTTGATTATATT+AGG | + | chr3_2:63422705-63422724 | None:intergenic | 25.0% |
| ! | GATTAGATGAATTGTGTTAT+TGG | - | chr3_2:63423032-63423051 | Msa0416520:intron | 25.0% |
| !! | CATTCATCTGACTAATTTTA+GGG | + | chr3_2:63423184-63423203 | None:intergenic | 25.0% |
| !! | ACATTCATCTGACTAATTTT+AGG | + | chr3_2:63423185-63423204 | None:intergenic | 25.0% |
| ! | TAAAATTAGTCAGATGAATG+TGG | - | chr3_2:63423184-63423203 | Msa0416520:intron | 25.0% |
| ! | ACAATTTGAGTAGATCTAAT+TGG | - | chr3_2:63423259-63423278 | Msa0416520:intron | 25.0% |
| ! | TATTATAACCAAAACTTGGT+TGG | - | chr3_2:63423474-63423493 | Msa0416520:intron | 25.0% |
| ! | TTGAATCAGTTGTTAATTGT+TGG | - | chr3_2:63423530-63423549 | Msa0416520:intron | 25.0% |
| TTGTTTGTGATCAATCTAGA+AGG | - | chr3_2:63420858-63420877 | Msa0416520:three_prime_UTR | 30.0% | |
| GTCTTCATATAAAGCAAGAT+GGG | + | chr3_2:63420913-63420932 | None:intergenic | 30.0% | |
| TGTCTTCATATAAAGCAAGA+TGG | + | chr3_2:63420914-63420933 | None:intergenic | 30.0% | |
| AGAGAAAAAGGTGATGAAAA+AGG | + | chr3_2:63420951-63420970 | None:intergenic | 30.0% | |
| AGCGAAAAAAAGAGAGAAAA+AGG | + | chr3_2:63420963-63420982 | None:intergenic | 30.0% | |
| TACCAATTCATTTGTGTTCA+TGG | - | chr3_2:63421067-63421086 | Msa0416520:intron | 30.0% | |
| AACCATGAACACAAATGAAT+TGG | + | chr3_2:63421072-63421091 | None:intergenic | 30.0% | |
| ACATTAGACATACATCATTG+TGG | + | chr3_2:63421466-63421485 | None:intergenic | 30.0% | |
| CAACTTGGTATATTTCAACT+TGG | + | chr3_2:63421535-63421554 | None:intergenic | 30.0% | |
| CAATTAGACATATCTCAACT+TGG | + | chr3_2:63421550-63421569 | None:intergenic | 30.0% | |
| !! | AATTTGTTGAGAATCTATGC+TGG | + | chr3_2:63421597-63421616 | None:intergenic | 30.0% |
| CATATCATTCACTAGTATTG+AGG | + | chr3_2:63421623-63421642 | None:intergenic | 30.0% | |
| CTCAATACTAGTGAATGATA+TGG | - | chr3_2:63421621-63421640 | Msa0416520:CDS | 30.0% | |
| AATACTAGTGAATGATATGG+AGG | - | chr3_2:63421624-63421643 | Msa0416520:CDS | 30.0% | |
| ! | ACACTAGCATTATTTTCCTT+TGG | + | chr3_2:63421660-63421679 | None:intergenic | 30.0% |
| TGCAAAGACATTACCATTAT+TGG | + | chr3_2:63421947-63421966 | None:intergenic | 30.0% | |
| !! | ACACTAAAGGAGTATTAAGA+AGG | - | chr3_2:63422129-63422148 | Msa0416520:intron | 30.0% |
| ACTAAAAGCTACATGAAAGA+AGG | + | chr3_2:63422576-63422595 | None:intergenic | 30.0% | |
| !! | GTAGCTTTTAGTTACAGAAA+TGG | - | chr3_2:63422584-63422603 | Msa0416520:intron | 30.0% |
| CATAAAGAGTCTCTTTAGAT+TGG | - | chr3_2:63422733-63422752 | Msa0416520:intron | 30.0% | |
| ! | GTTTATTTGAGATTATCCAC+TGG | - | chr3_2:63422755-63422774 | Msa0416520:intron | 30.0% |
| AAGACTATTGAGAGAACTTA+TGG | - | chr3_2:63422791-63422810 | Msa0416520:intron | 30.0% | |
| TACATAATTGGACTCTGTTT+GGG | + | chr3_2:63423004-63423023 | None:intergenic | 30.0% | |
| TTACATAATTGGACTCTGTT+TGG | + | chr3_2:63423005-63423024 | None:intergenic | 30.0% | |
| AACAGAGTCCAATTATGTAA+TGG | - | chr3_2:63423005-63423024 | Msa0416520:intron | 30.0% | |
| AAGGAATGTACAATTAGGAA+TGG | + | chr3_2:63423159-63423178 | None:intergenic | 30.0% | |
| !!! | TCTGACTAATTTTAGGGTTA+AGG | + | chr3_2:63423178-63423197 | None:intergenic | 30.0% |
| AGATGAATGTGGATTTATAC+AGG | - | chr3_2:63423195-63423214 | Msa0416520:intron | 30.0% | |
| ! | AAAATCAACCAACCAAGTTT+TGG | + | chr3_2:63423485-63423504 | None:intergenic | 30.0% |
| !! | TTGGTTGGTTGATTTTATGT+TGG | - | chr3_2:63423489-63423508 | Msa0416520:intron | 30.0% |
| TGGTTGAAGATTAACGTTAC+CGG | + | chr3_2:63420761-63420780 | None:intergenic | 35.0% | |
| ATATGAAGACATCGTTTCCA+AGG | - | chr3_2:63420923-63420942 | Msa0416520:intron | 35.0% | |
| ! | TCCATTCATCCTTTTCTCAT+CGG | - | chr3_2:63421024-63421043 | Msa0416520:intron | 35.0% |
| TCTATCTAACCGATGAGAAA+AGG | + | chr3_2:63421036-63421055 | None:intergenic | 35.0% | |
| TGGAGGATATTATCTTCCAA+AGG | - | chr3_2:63421641-63421660 | Msa0416520:CDS | 35.0% | |
| ! | AATGGTAATGTCTTTGCATG+TGG | - | chr3_2:63421949-63421968 | Msa0416520:intron | 35.0% |
| ATAATAAGATGATGCACAGG+CGG | + | chr3_2:63422051-63422070 | None:intergenic | 35.0% | |
| GCAATAATAAGATGATGCAC+AGG | + | chr3_2:63422054-63422073 | None:intergenic | 35.0% | |
| !! | CTAAAGGAGTATTAAGAAGG+AGG | - | chr3_2:63422132-63422151 | Msa0416520:intron | 35.0% |
| AGTATTAAGAAGGAGGTTCA+GGG | - | chr3_2:63422139-63422158 | Msa0416520:intron | 35.0% | |
| !! | GTTAACTTTTTAGGAGGAGA+GGG | + | chr3_2:63422188-63422207 | None:intergenic | 35.0% |
| !! | TTAGCGGTTAACTTTTTAGG+AGG | + | chr3_2:63422194-63422213 | None:intergenic | 35.0% |
| ! | AACATTTTCGGTCAACACTT+TGG | + | chr3_2:63422310-63422329 | None:intergenic | 35.0% |
| ! | TTTGCAGTTGCCTCTTTTTA+AGG | - | chr3_2:63422365-63422384 | Msa0416520:intron | 35.0% |
| !! | GTACTTTTGGTCTTTTTCGT+GGG | + | chr3_2:63422628-63422647 | None:intergenic | 35.0% |
| !! | TGTACTTTTGGTCTTTTTCG+TGG | + | chr3_2:63422629-63422648 | None:intergenic | 35.0% |
| ! | CGAAAAAGACCAAAAGTACA+AGG | - | chr3_2:63422629-63422648 | Msa0416520:intron | 35.0% |
| ! | AAAGACCAAAAGTACAAGGA+AGG | - | chr3_2:63422633-63422652 | Msa0416520:intron | 35.0% |
| ! | ACTTTCCTTCCTTGTACTTT+TGG | + | chr3_2:63422641-63422660 | None:intergenic | 35.0% |
| AGCAATTATCGGATCAACAA+TGG | - | chr3_2:63423084-63423103 | Msa0416520:intron | 35.0% | |
| GGGTTAAGGAATGTACAATT+AGG | + | chr3_2:63423164-63423183 | None:intergenic | 35.0% | |
| TACATCACATGATACTGGAA+AGG | + | chr3_2:63423381-63423400 | None:intergenic | 35.0% | |
| AGAGATACATCACATGATAC+TGG | + | chr3_2:63423386-63423405 | None:intergenic | 35.0% | |
| TGCAGTTGTTGTAAGAAACG+TGG | + | chr3_2:63420713-63420732 | None:intergenic | 40.0% | |
| TCTTCTTCTTCGCAGATTCA+TGG | - | chr3_2:63420830-63420849 | Msa0416520:three_prime_UTR | 40.0% | |
| CTTCTTCTTCGCAGATTCAT+GGG | - | chr3_2:63420831-63420850 | Msa0416520:three_prime_UTR | 40.0% | |
| TTCTTCTTCGCAGATTCATG+GGG | - | chr3_2:63420832-63420851 | Msa0416520:three_prime_UTR | 40.0% | |
| AGGTGATGAAAAAGGAACCT+TGG | + | chr3_2:63420943-63420962 | None:intergenic | 40.0% | |
| ACCGATGAGAAAAGGATGAA+TGG | + | chr3_2:63421028-63421047 | None:intergenic | 40.0% | |
| GCTGGTTACGATTTACAACT+TGG | + | chr3_2:63421579-63421598 | None:intergenic | 40.0% | |
| GACATTACCATTATTGGCGA+CGG | + | chr3_2:63421941-63421960 | None:intergenic | 40.0% | |
| TAATAAGATGATGCACAGGC+GGG | + | chr3_2:63422050-63422069 | None:intergenic | 40.0% | |
| ! | GTATCGTACTGGTATGAGTT+TGG | - | chr3_2:63422106-63422125 | Msa0416520:intron | 40.0% |
| GGTATGAGTTTGGACACTAA+AGG | - | chr3_2:63422116-63422135 | Msa0416520:intron | 40.0% | |
| GAGTATTAAGAAGGAGGTTC+AGG | - | chr3_2:63422138-63422157 | Msa0416520:intron | 40.0% | |
| !! | GGTTAACTTTTTAGGAGGAG+AGG | + | chr3_2:63422189-63422208 | None:intergenic | 40.0% |
| ! | TGTAGCTGACATTTTCTGTG+TGG | - | chr3_2:63422482-63422501 | Msa0416520:intron | 40.0% |
| ! | GTAGCTGACATTTTCTGTGT+GGG | - | chr3_2:63422483-63422502 | Msa0416520:intron | 40.0% |
| !! | TACAGAAATGGTGCTGTTTC+AGG | - | chr3_2:63422596-63422615 | Msa0416520:intron | 40.0% |
| AAGGAAAGTCTGTGCTTGAA+AGG | - | chr3_2:63422652-63422671 | Msa0416520:intron | 40.0% | |
| ! | GATGAATTGTGTTATTGGGC+AGG | - | chr3_2:63423037-63423056 | Msa0416520:intron | 40.0% |
| GTCCTGATGGTAGCAATTAT+CGG | - | chr3_2:63423073-63423092 | Msa0416520:intron | 40.0% | |
| ATCCGATAATTGCTACCATC+AGG | + | chr3_2:63423078-63423097 | None:intergenic | 40.0% | |
| ATCAACAATGGAGCACATGT+TGG | - | chr3_2:63423096-63423115 | Msa0416520:intron | 40.0% | |
| ATTAGGAATGGCGAGATGAA+TGG | + | chr3_2:63423147-63423166 | None:intergenic | 40.0% | |
| ! | TCGATTTGTAGCACCATAGT+TGG | - | chr3_2:63423345-63423364 | Msa0416520:intron | 40.0% |
| AGGCTTTCTTCATCCAACTA+TGG | + | chr3_2:63423361-63423380 | None:intergenic | 40.0% | |
| ATGTGAAACACTGACACAAC+AGG | - | chr3_2:63423572-63423591 | Msa0416520:CDS | 40.0% | |
| TAGACTTTCCACTCCAGACA+TGG | - | chr3_2:63421818-63421837 | Msa0416520:CDS | 45.0% | |
| AGACTTTCCACTCCAGACAT+GGG | - | chr3_2:63421819-63421838 | Msa0416520:CDS | 45.0% | |
| GAGATAAGCTTTCCCATGTC+TGG | + | chr3_2:63421834-63421853 | None:intergenic | 45.0% | |
| ATTGAGACCGTCGCCAATAA+TGG | - | chr3_2:63421931-63421950 | Msa0416520:intron | 45.0% | |
| TATGTCGATCAAGTCCCTGA+AGG | - | chr3_2:63422082-63422101 | Msa0416520:intron | 45.0% | |
| ACCAGTACGATACACCTTCA+GGG | + | chr3_2:63422099-63422118 | None:intergenic | 45.0% | |
| TACCAGTACGATACACCTTC+AGG | + | chr3_2:63422100-63422119 | None:intergenic | 45.0% | |
| GACAGCGTGAATGTTTCTCT+TGG | - | chr3_2:63422420-63422439 | Msa0416520:intron | 45.0% | |
| TGTTTCTCTTGGCGAAACAG+AGG | - | chr3_2:63422431-63422450 | Msa0416520:CDS | 45.0% | |
| GTATGCAACCCAGTCATCAT+CGG | + | chr3_2:63422462-63422481 | None:intergenic | 45.0% | |
| !! | GACATTTTCTGTGTGGGTTG+TGG | - | chr3_2:63422489-63422508 | Msa0416520:intron | 45.0% |
| CTTACAAGTGCTTATGCCAG+TGG | + | chr3_2:63422774-63422793 | None:intergenic | 45.0% | |
| ! | TGTGTTATTGGGCAGGTACA+AGG | - | chr3_2:63423044-63423063 | Msa0416520:intron | 45.0% |
| ! | TACAAGGTATCAGGTCCTGA+TGG | - | chr3_2:63423060-63423079 | Msa0416520:intron | 45.0% |
| AACAATGGAGCACATGTTGG+CGG | - | chr3_2:63423099-63423118 | Msa0416520:intron | 45.0% | |
| CAACAGACACACACACACAC+CGG | - | chr3_2:63420739-63420758 | Msa0416520:intron | 50.0% | |
| AAGCTTTCCCATGTCTGGAG+TGG | + | chr3_2:63421829-63421848 | None:intergenic | 50.0% | |
| ! | TCCCTGAAGGTGTATCGTAC+TGG | - | chr3_2:63422095-63422114 | Msa0416520:intron | 50.0% |
| AGGAGAGACCGATGATGACT+GGG | - | chr3_2:63422451-63422470 | Msa0416520:CDS | 50.0% | |
| ! | TGTGGGTTGTGGATCGATTG+TGG | - | chr3_2:63422500-63422519 | Msa0416520:intron | 50.0% |
| ! | GTGGGTTGTGGATCGATTGT+GGG | - | chr3_2:63422501-63422520 | Msa0416520:intron | 50.0% |
| GTTGTGGATCGATTGTGGGT+TGG | - | chr3_2:63422505-63422524 | Msa0416520:intron | 50.0% | |
| ! | TTGGGCAGGTACAAGGTATC+AGG | - | chr3_2:63423051-63423070 | Msa0416520:intron | 50.0% |
| CGGTGTGTGTGTGTGTCTGT+TGG | + | chr3_2:63420741-63420760 | None:intergenic | 55.0% | |
| ATGGGTGCGACAGTATCTGC+AGG | + | chr3_2:63420895-63420914 | None:intergenic | 55.0% | |
| GAGGAGAGACCGATGATGAC+TGG | - | chr3_2:63422450-63422469 | Msa0416520:CDS | 55.0% | |
| ATGATGCACAGGCGGGCATG+TGG | + | chr3_2:63422043-63422062 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 63420692 | 63423601 | 63420692 | ID=Msa0416520;Name=Msa0416520 |
| chr3_2 | mRNA | 63420692 | 63423601 | 63420692 | ID=Msa0416520-mRNA-1;Parent=Msa0416520;Name=Msa0416520-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.83|0.85|1|0.16|0|7|250|120 |
| chr3_2 | exon | 63420692 | 63420754 | 63420692 | ID=Msa0416520-mRNA-1:exon:13832;Parent=Msa0416520-mRNA-1 |
| chr3_2 | exon | 63420775 | 63420937 | 63420775 | ID=Msa0416520-mRNA-1:exon:13831;Parent=Msa0416520-mRNA-1 |
| chr3_2 | exon | 63421126 | 63421234 | 63421126 | ID=Msa0416520-mRNA-1:exon:13830;Parent=Msa0416520-mRNA-1 |
| chr3_2 | exon | 63421620 | 63421675 | 63421620 | ID=Msa0416520-mRNA-1:exon:13829;Parent=Msa0416520-mRNA-1 |
| chr3_2 | exon | 63421760 | 63421868 | 63421760 | ID=Msa0416520-mRNA-1:exon:13828;Parent=Msa0416520-mRNA-1 |
| chr3_2 | exon | 63422429 | 63422472 | 63422429 | ID=Msa0416520-mRNA-1:exon:13827;Parent=Msa0416520-mRNA-1 |
| chr3_2 | exon | 63423533 | 63423601 | 63423533 | ID=Msa0416520-mRNA-1:exon:13826;Parent=Msa0416520-mRNA-1 |
| chr3_2 | CDS | 63423533 | 63423601 | 63423533 | ID=Msa0416520-mRNA-1:cds;Parent=Msa0416520-mRNA-1 |
| chr3_2 | CDS | 63422429 | 63422472 | 63422429 | ID=Msa0416520-mRNA-1:cds;Parent=Msa0416520-mRNA-1 |
| chr3_2 | CDS | 63421760 | 63421868 | 63421760 | ID=Msa0416520-mRNA-1:cds;Parent=Msa0416520-mRNA-1 |
| chr3_2 | CDS | 63421620 | 63421675 | 63421620 | ID=Msa0416520-mRNA-1:cds;Parent=Msa0416520-mRNA-1 |
| chr3_2 | CDS | 63421150 | 63421234 | 63421150 | ID=Msa0416520-mRNA-1:cds;Parent=Msa0416520-mRNA-1 |
| chr3_2 | three_prime_UTR | 63421126 | 63421149 | 63421126 | ID=Msa0416520-mRNA-1:three_prime_utr;Parent=Msa0416520-mRNA-1 |
| chr3_2 | three_prime_UTR | 63420775 | 63420937 | 63420775 | ID=Msa0416520-mRNA-1:three_prime_utr;Parent=Msa0416520-mRNA-1 |
| chr3_2 | three_prime_UTR | 63420692 | 63420754 | 63420692 | ID=Msa0416520-mRNA-1:three_prime_utr;Parent=Msa0416520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
