Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0320740 | XP_013463279.1 | 92.541 | 362 | 25 | 1 | 29 | 390 | 28 | 387 | 0.0 | 671 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0320740 | TR | mTERF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0012060 | Msa0320740 | 0.813970 | 1.954080e-51 | -8.615850e-47 |
Msa0017510 | Msa0320740 | 0.842612 | 2.324552e-58 | -8.615850e-47 |
Msa0046100 | Msa0320740 | 0.803876 | 2.827231e-49 | -8.615850e-47 |
Msa0068680 | Msa0320740 | 0.804606 | 1.993078e-49 | -8.615850e-47 |
Msa0101810 | Msa0320740 | -0.827328 | 1.662541e-54 | -8.615850e-47 |
Msa0122590 | Msa0320740 | 0.809138 | 2.194066e-50 | -8.615850e-47 |
Msa0157290 | Msa0320740 | 0.844099 | 9.324816e-59 | -8.615850e-47 |
Msa0166870 | Msa0320740 | 0.802381 | 5.763044e-49 | -8.615850e-47 |
Msa0179580 | Msa0320740 | 0.821977 | 3.030646e-53 | -8.615850e-47 |
Msa0191250 | Msa0320740 | 0.801114 | 1.048722e-48 | -8.615850e-47 |
Msa0212990 | Msa0320740 | 0.812863 | 3.422076e-51 | -8.615850e-47 |
Msa0215320 | Msa0320740 | -0.832040 | 1.186049e-55 | -8.615850e-47 |
Msa0217400 | Msa0320740 | 0.810525 | 1.104022e-50 | -8.615850e-47 |
Msa0226890 | Msa0320740 | 0.808513 | 2.985363e-50 | -8.615850e-47 |
Msa0245940 | Msa0320740 | 0.804749 | 1.860173e-49 | -8.615850e-47 |
Msa0258760 | Msa0320740 | 0.810772 | 9.761351e-51 | -8.615850e-47 |
Msa0269450 | Msa0320740 | 0.801573 | 8.449519e-49 | -8.615850e-47 |
Msa0294590 | Msa0320740 | 0.809044 | 2.298062e-50 | -8.615850e-47 |
Msa0296160 | Msa0320740 | 0.806098 | 9.699781e-50 | -8.615850e-47 |
Msa0311580 | Msa0320740 | 0.800282 | 1.550834e-48 | -8.615850e-47 |
Msa0315290 | Msa0320740 | 0.804050 | 2.601538e-49 | -8.615850e-47 |
Msa0320740 | Msa0330340 | 0.800107 | 1.683376e-48 | -8.615850e-47 |
Msa0320740 | Msa0334570 | 0.805191 | 1.503550e-49 | -8.615850e-47 |
Msa0320740 | Msa0342100 | 0.804361 | 2.241463e-49 | -8.615850e-47 |
Msa0320740 | Msa0344830 | 0.807549 | 4.788038e-50 | -8.615850e-47 |
Msa0320740 | Msa0350990 | 0.800883 | 1.169123e-48 | -8.615850e-47 |
Msa0320740 | Msa0354800 | -0.816031 | 6.818992e-52 | -8.615850e-47 |
Msa0320740 | Msa0359030 | 0.809776 | 1.600515e-50 | -8.615850e-47 |
Msa0320740 | Msa0363310 | 0.817537 | 3.132964e-52 | -8.615850e-47 |
Msa0320740 | Msa0366240 | 0.806318 | 8.720001e-50 | -8.615850e-47 |
Msa0320740 | Msa0388960 | 0.808447 | 3.083011e-50 | -8.615850e-47 |
Msa0320740 | Msa0395790 | 0.838433 | 2.884564e-57 | -8.615850e-47 |
Msa0320740 | Msa0416520 | 0.820918 | 5.320531e-53 | -8.615850e-47 |
Msa0320740 | Msa0417270 | 0.801172 | 1.020614e-48 | -8.615850e-47 |
Msa0320740 | Msa0443260 | 0.830719 | 2.506407e-55 | -8.615850e-47 |
Msa0320740 | Msa0444750 | -0.800204 | 1.608629e-48 | -8.615850e-47 |
Msa0320740 | Msa0466390 | 0.829953 | 3.857833e-55 | -8.615850e-47 |
Msa0320740 | Msa0469290 | 0.803492 | 3.396530e-49 | -8.615850e-47 |
Msa0320740 | Msa0484780 | 0.808953 | 2.403508e-50 | -8.615850e-47 |
Msa0320740 | Msa0490390 | 0.829228 | 5.789497e-55 | -8.615850e-47 |
Msa0320740 | Msa0492880 | 0.814213 | 1.727414e-51 | -8.615850e-47 |
Msa0320740 | Msa0495320 | 0.809257 | 2.069213e-50 | -8.615850e-47 |
Msa0320740 | Msa0495330 | 0.825592 | 4.309111e-54 | -8.615850e-47 |
Msa0320740 | Msa0507440 | 0.830066 | 3.619932e-55 | -8.615850e-47 |
Msa0320740 | Msa0509610 | 0.809344 | 1.982057e-50 | -8.615850e-47 |
Msa0320740 | Msa0512750 | 0.803554 | 3.298866e-49 | -8.615850e-47 |
Msa0320740 | Msa0515010 | 0.818273 | 2.136315e-52 | -8.615850e-47 |
Msa0320740 | Msa0523940 | 0.802049 | 6.746853e-49 | -8.615850e-47 |
Msa0320740 | Msa0536220 | 0.844611 | 6.790994e-59 | -8.615850e-47 |
Msa0320740 | Msa0542480 | 0.800273 | 1.557255e-48 | -8.615850e-47 |
Msa0320740 | Msa0555020 | 0.811988 | 5.314763e-51 | -8.615850e-47 |
Msa0320740 | Msa0566500 | -0.808074 | 3.702021e-50 | -8.615850e-47 |
Msa0320740 | Msa0574890 | 0.804134 | 2.499681e-49 | -8.615850e-47 |
Msa0320740 | Msa0585230 | 0.810068 | 1.384937e-50 | -8.615850e-47 |
Msa0320740 | Msa0588230 | 0.801879 | 7.311770e-49 | -8.615850e-47 |
Msa0320740 | Msa0597330 | 0.813882 | 2.044113e-51 | -8.615850e-47 |
Msa0320740 | Msa0614250 | 0.807870 | 4.092979e-50 | -8.615850e-47 |
Msa0320740 | Msa0657970 | 0.809577 | 1.766283e-50 | -8.615850e-47 |
Msa0320740 | Msa0658570 | 0.808486 | 3.024425e-50 | -8.615850e-47 |
Msa0320740 | Msa0662650 | 0.816843 | 4.486110e-52 | -8.615850e-47 |
Msa0320740 | Msa0669320 | 0.819061 | 1.415384e-52 | -8.615850e-47 |
Msa0320740 | Msa0688070 | 0.805038 | 1.619098e-49 | -8.615850e-47 |
Msa0320740 | Msa0690520 | 0.808481 | 3.031712e-50 | -8.615850e-47 |
Msa0320740 | Msa0696640 | 0.827154 | 1.829684e-54 | -8.615850e-47 |
Msa0320740 | Msa0708860 | 0.815513 | 8.894632e-52 | -8.615850e-47 |
Msa0320740 | Msa0731940 | 0.802401 | 5.710665e-49 | -8.615850e-47 |
Msa0320740 | Msa0735170 | 0.818453 | 1.944487e-52 | -8.615850e-47 |
Msa0320740 | Msa0743720 | 0.803435 | 3.491306e-49 | -8.615850e-47 |
Msa0320740 | Msa0753720 | 0.821980 | 3.026080e-53 | -8.615850e-47 |
Msa0320740 | Msa0756630 | -0.806567 | 7.727107e-50 | -8.615850e-47 |
Msa0320740 | Msa0769390 | 0.821641 | 3.624742e-53 | -8.615850e-47 |
Msa0320740 | Msa0777230 | 0.809499 | 1.835864e-50 | -8.615850e-47 |
Msa0320740 | Msa0789690 | 0.802466 | 5.536855e-49 | -8.615850e-47 |
Msa0320740 | Msa0828940 | 0.807603 | 4.663605e-50 | -8.615850e-47 |
Msa0320740 | Msa0832370 | 0.835157 | 1.975907e-56 | -8.615850e-47 |
Msa0320740 | Msa0842650 | 0.802423 | 5.649966e-49 | -8.615850e-47 |
Msa0320740 | Msa0867890 | 0.806381 | 8.458267e-50 | -8.615850e-47 |
Msa0320740 | Msa0870530 | 0.829624 | 4.638987e-55 | -8.615850e-47 |
Msa0320740 | Msa0880140 | 0.842073 | 3.230938e-58 | -8.615850e-47 |
Msa0320740 | Msa0885280 | 0.806888 | 6.608571e-50 | -8.615850e-47 |
Msa0320740 | Msa0891040 | 0.818267 | 2.143429e-52 | -8.615850e-47 |
Msa0320740 | Msa0896220 | 0.812862 | 3.423809e-51 | -8.615850e-47 |
Msa0320740 | Msa0903700 | 0.824582 | 7.464648e-54 | -8.615850e-47 |
Msa0320740 | Msa0908050 | 0.838472 | 2.818289e-57 | -8.615850e-47 |
Msa0320740 | Msa0930390 | 0.810815 | 9.555134e-51 | -8.615850e-47 |
Msa0320740 | Msa0942200 | 0.822373 | 2.452655e-53 | -8.615850e-47 |
Msa0320740 | Msa0953120 | 0.817606 | 3.021639e-52 | -8.615850e-47 |
Msa0320740 | Msa0969520 | 0.807055 | 6.094380e-50 | -8.615850e-47 |
Msa0320740 | Msa0969570 | 0.802146 | 6.443708e-49 | -8.615850e-47 |
Msa0320740 | Msa0990960 | 0.849104 | 4.005782e-60 | -8.615850e-47 |
Msa0320740 | Msa1008490 | 0.807310 | 5.380838e-50 | -8.615850e-47 |
Msa0320740 | Msa1030970 | 0.822549 | 2.231697e-53 | -8.615850e-47 |
Msa0320740 | Msa1075220 | -0.828504 | 8.665023e-55 | -8.615850e-47 |
Msa0320740 | Msa1082500 | 0.818873 | 1.561329e-52 | -8.615850e-47 |
Msa0320740 | Msa1085300 | 0.828572 | 8.345537e-55 | -8.615850e-47 |
Msa0320740 | Msa1116130 | -0.811975 | 5.349141e-51 | -8.615850e-47 |
Msa0320740 | Msa1137570 | 0.809498 | 1.836970e-50 | -8.615850e-47 |
Msa0320740 | Msa1139000 | -0.804936 | 1.700617e-49 | -8.615850e-47 |
Msa0320740 | Msa1162550 | -0.838518 | 2.742831e-57 | -8.615850e-47 |
Msa0320740 | Msa1169090 | 0.810408 | 1.170176e-50 | -8.615850e-47 |
Msa0320740 | Msa1170440 | 0.807756 | 4.327340e-50 | -8.615850e-47 |
Msa0320740 | Msa1179460 | 0.818379 | 2.021721e-52 | -8.615850e-47 |
Msa0320740 | Msa1186060 | 0.801912 | 7.198529e-49 | -8.615850e-47 |
Msa0320740 | Msa1224480 | 0.804664 | 1.938357e-49 | -8.615850e-47 |
Msa0320740 | Msa1228210 | 0.803921 | 2.767800e-49 | -8.615850e-47 |
Msa0320740 | Msa1235740 | 0.801346 | 9.403441e-49 | -8.615850e-47 |
Msa0320740 | Msa1237820 | 0.801284 | 9.680752e-49 | -8.615850e-47 |
Msa0320740 | Msa1238930 | 0.840167 | 1.023240e-57 | -8.615850e-47 |
Msa0320740 | Msa1239530 | 0.846331 | 2.323506e-59 | -8.615850e-47 |
Msa0320740 | Msa1271300 | 0.818510 | 1.887369e-52 | -8.615850e-47 |
Msa0320740 | Msa1277280 | 0.800758 | 1.240313e-48 | -8.615850e-47 |
Msa0320740 | Msa1279210 | 0.811018 | 8.634997e-51 | -8.615850e-47 |
Msa0320740 | Msa1283860 | 0.828808 | 7.319009e-55 | -8.615850e-47 |
Msa0320740 | Msa1284680 | 0.801304 | 9.590719e-49 | -8.615850e-47 |
Msa0320740 | Msa1300490 | 0.827984 | 1.156576e-54 | -8.615850e-47 |
Msa0320740 | Msa1313150 | 0.802679 | 5.004008e-49 | -8.615850e-47 |
Msa0320740 | Msa1322860 | 0.801217 | 9.991544e-49 | -8.615850e-47 |
Msa0320740 | Msa1322890 | 0.813672 | 2.273719e-51 | -8.615850e-47 |
Msa0320740 | Msa1327050 | 0.808394 | 3.165319e-50 | -8.615850e-47 |
Msa0320740 | Msa1346370 | 0.804587 | 2.011231e-49 | -8.615850e-47 |
Msa0320740 | Msa1353470 | 0.802692 | 4.973517e-49 | -8.615850e-47 |
Msa0320740 | Msa1359650 | -0.800190 | 1.619103e-48 | -8.615850e-47 |
Msa0320740 | Msa1376890 | 0.805254 | 1.458583e-49 | -8.615850e-47 |
Msa0320740 | Msa1384350 | 0.811573 | 6.544750e-51 | -8.615850e-47 |
Msa0320740 | Msa1392260 | 0.802881 | 4.544681e-49 | -8.615850e-47 |
Msa0320740 | Msa1395660 | 0.808133 | 3.596412e-50 | -8.615850e-47 |
Msa0320740 | Msa1423880 | 0.802184 | 6.329393e-49 | -8.615850e-47 |
Msa0320740 | Msa1426000 | 0.824849 | 6.458391e-54 | -8.615850e-47 |
Msa0320740 | Msa1429900 | 0.800015 | 1.757404e-48 | -8.615850e-47 |
Msa0320740 | Msa1451620 | -0.825197 | 5.346047e-54 | -8.615850e-47 |
Msa0320740 | Msa1461300 | 0.807011 | 6.224399e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0320740 | MtrunA17_Chr2g0296191 | 92.197 | 346 | 25 | 1 | 29 | 374 | 167 | 510 | 0.0 | 639 |
Msa0320740 | MtrunA17_Chr2g0296191 | 62.575 | 334 | 118 | 3 | 48 | 374 | 664 | 997 | 3.42e-134 | 409 |
Msa0320740 | MtrunA17_Chr2g0296251 | 59.079 | 391 | 120 | 3 | 21 | 373 | 9 | 397 | 1.75e-154 | 441 |
Msa0320740 | MtrunA17_Chr2g0296221 | 63.977 | 347 | 118 | 3 | 48 | 387 | 81 | 427 | 1.36e-151 | 435 |
Msa0320740 | MtrunA17_Chr2g0296711 | 60.920 | 348 | 131 | 2 | 48 | 390 | 55 | 402 | 9.60e-149 | 427 |
Msa0320740 | MtrunA17_Chr2g0296721 | 61.960 | 347 | 128 | 2 | 48 | 390 | 52 | 398 | 8.68e-148 | 424 |
Msa0320740 | MtrunA17_Chr2g0315731 | 62.356 | 348 | 126 | 2 | 48 | 390 | 72 | 419 | 8.73e-148 | 425 |
Msa0320740 | MtrunA17_Chr2g0296741 | 59.483 | 348 | 136 | 2 | 48 | 390 | 72 | 419 | 1.68e-143 | 414 |
Msa0320740 | MtrunA17_Chr2g0296291 | 57.180 | 383 | 126 | 2 | 46 | 390 | 32 | 414 | 1.93e-143 | 414 |
Msa0320740 | MtrunA17_Chr2g0296231 | 57.182 | 362 | 146 | 4 | 35 | 389 | 36 | 395 | 1.97e-137 | 397 |
Msa0320740 | MtrunA17_Chr2g0296171 | 59.459 | 333 | 128 | 3 | 48 | 373 | 62 | 394 | 7.71e-132 | 384 |
Msa0320740 | MtrunA17_Chr2g0296181 | 53.401 | 397 | 140 | 7 | 2 | 388 | 10 | 371 | 1.60e-129 | 377 |
Msa0320740 | MtrunA17_Chr2g0296151 | 52.367 | 338 | 159 | 1 | 47 | 382 | 41 | 378 | 1.60e-120 | 354 |
Msa0320740 | MtrunA17_Chr2g0295741 | 52.047 | 342 | 162 | 1 | 47 | 386 | 47 | 388 | 1.69e-118 | 349 |
Msa0320740 | MtrunA17_Chr2g0296111 | 53.529 | 340 | 153 | 3 | 47 | 382 | 40 | 378 | 8.20e-116 | 342 |
Msa0320740 | MtrunA17_Chr2g0296121 | 50.292 | 342 | 168 | 1 | 47 | 386 | 127 | 468 | 4.77e-114 | 340 |
Msa0320740 | MtrunA17_Chr4g0067121 | 51.929 | 337 | 161 | 1 | 47 | 382 | 52 | 388 | 3.38e-113 | 336 |
Msa0320740 | MtrunA17_Chr2g0296301 | 46.875 | 352 | 180 | 2 | 46 | 390 | 36 | 387 | 4.28e-113 | 335 |
Msa0320740 | MtrunA17_Chr2g0295731 | 45.845 | 373 | 178 | 4 | 19 | 378 | 20 | 381 | 6.73e-110 | 327 |
Msa0320740 | MtrunA17_Chr2g0295761 | 50.296 | 338 | 167 | 1 | 41 | 377 | 55 | 392 | 3.73e-105 | 315 |
Msa0320740 | MtrunA17_Chr2g0296551 | 67.839 | 199 | 64 | 0 | 191 | 389 | 1 | 199 | 7.11e-95 | 282 |
Msa0320740 | MtrunA17_Chr4g0067141 | 45.161 | 341 | 187 | 0 | 32 | 372 | 30 | 370 | 1.32e-94 | 288 |
Msa0320740 | MtrunA17_Chr2g0296211 | 45.506 | 356 | 107 | 5 | 33 | 388 | 104 | 372 | 8.52e-91 | 278 |
Msa0320740 | MtrunA17_Chr4g0067671 | 45.223 | 314 | 172 | 0 | 44 | 357 | 42 | 355 | 6.68e-88 | 270 |
Msa0320740 | MtrunA17_Chr2g0296701 | 73.684 | 171 | 45 | 0 | 220 | 390 | 2 | 172 | 8.20e-88 | 263 |
Msa0320740 | MtrunA17_Chr2g0286191 | 44.412 | 340 | 184 | 4 | 44 | 381 | 30 | 366 | 1.45e-84 | 261 |
Msa0320740 | MtrunA17_Chr2g0296751 | 68.966 | 145 | 44 | 1 | 246 | 390 | 1 | 144 | 3.14e-66 | 207 |
Msa0320740 | MtrunA17_Chr2g0296131 | 58.434 | 166 | 69 | 0 | 221 | 386 | 9 | 174 | 7.78e-66 | 207 |
Msa0320740 | MtrunA17_Chr2g0296161 | 52.941 | 170 | 80 | 0 | 218 | 387 | 2 | 171 | 2.99e-61 | 195 |
Msa0320740 | MtrunA17_Chr4g0001831 | 34.030 | 335 | 210 | 6 | 46 | 372 | 37 | 368 | 9.09e-48 | 166 |
Msa0320740 | MtrunA17_Chr2g0295721 | 60.714 | 112 | 44 | 0 | 218 | 329 | 2 | 113 | 1.06e-43 | 148 |
Msa0320740 | MtrunA17_Chr2g0286221 | 44.172 | 163 | 89 | 2 | 217 | 379 | 14 | 174 | 1.67e-39 | 139 |
Msa0320740 | MtrunA17_Chr8g0377801 | 28.197 | 305 | 216 | 2 | 71 | 372 | 81 | 385 | 5.58e-33 | 127 |
Msa0320740 | MtrunA17_Chr2g0295711 | 43.605 | 172 | 91 | 3 | 26 | 193 | 26 | 195 | 3.22e-32 | 120 |
Msa0320740 | MtrunA17_Chr8g0377781 | 27.914 | 326 | 231 | 3 | 47 | 368 | 43 | 368 | 1.91e-30 | 120 |
Msa0320740 | MtrunA17_Chr2g0296561 | 52.212 | 113 | 53 | 1 | 46 | 158 | 36 | 147 | 1.50e-29 | 112 |
Msa0320740 | MtrunA17_Chr2g0295751 | 49.219 | 128 | 63 | 1 | 44 | 169 | 45 | 172 | 3.50e-28 | 115 |
Msa0320740 | MtrunA17_Chr4g0067131 | 48.148 | 81 | 42 | 0 | 290 | 370 | 1 | 81 | 1.75e-20 | 85.1 |
Msa0320740 | MtrunA17_Chr4g0067681 | 49.180 | 61 | 31 | 0 | 279 | 339 | 1 | 61 | 2.75e-14 | 67.4 |
Msa0320740 | MtrunA17_Chr4g0043941 | 22.591 | 301 | 215 | 8 | 69 | 358 | 31 | 324 | 6.70e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0320740 | AT5G07900.1 | 33.133 | 332 | 214 | 4 | 47 | 371 | 69 | 399 | 4.99e-59 | 197 |
Msa0320740 | AT1G21150.1 | 31.045 | 335 | 225 | 3 | 46 | 374 | 55 | 389 | 1.94e-48 | 169 |
Msa0320740 | AT1G21150.2 | 31.045 | 335 | 225 | 3 | 46 | 374 | 119 | 453 | 7.55e-48 | 169 |
Msa0320740 | AT1G21150.3 | 30.294 | 340 | 231 | 3 | 41 | 374 | 14 | 353 | 2.42e-47 | 165 |
Msa0320740 | AT1G61980.3 | 30.000 | 350 | 204 | 6 | 47 | 357 | 52 | 399 | 1.17e-37 | 140 |
Msa0320740 | AT1G61980.2 | 30.000 | 350 | 204 | 6 | 47 | 357 | 52 | 399 | 1.17e-37 | 140 |
Msa0320740 | AT1G61980.1 | 30.000 | 350 | 204 | 6 | 47 | 357 | 52 | 399 | 1.17e-37 | 140 |
Msa0320740 | AT1G61970.2 | 31.356 | 354 | 196 | 8 | 46 | 357 | 51 | 399 | 6.81e-37 | 139 |
Msa0320740 | AT1G61970.7 | 31.356 | 354 | 196 | 8 | 46 | 357 | 51 | 399 | 6.81e-37 | 139 |
Msa0320740 | AT1G61970.6 | 31.356 | 354 | 196 | 8 | 46 | 357 | 51 | 399 | 6.81e-37 | 139 |
Msa0320740 | AT1G61970.3 | 31.356 | 354 | 196 | 8 | 46 | 357 | 51 | 399 | 6.81e-37 | 139 |
Msa0320740 | AT1G61970.5 | 31.356 | 354 | 196 | 8 | 46 | 357 | 51 | 399 | 6.81e-37 | 139 |
Msa0320740 | AT1G61970.4 | 31.356 | 354 | 196 | 8 | 46 | 357 | 51 | 399 | 6.81e-37 | 139 |
Msa0320740 | AT1G61970.1 | 31.356 | 354 | 196 | 8 | 46 | 357 | 51 | 399 | 6.81e-37 | 139 |
Msa0320740 | AT1G61990.2 | 29.050 | 358 | 202 | 7 | 47 | 362 | 52 | 399 | 4.61e-35 | 134 |
Msa0320740 | AT1G61990.1 | 29.050 | 358 | 202 | 7 | 47 | 362 | 52 | 399 | 4.61e-35 | 134 |
Msa0320740 | AT1G62120.1 | 28.090 | 356 | 205 | 7 | 47 | 357 | 56 | 405 | 2.53e-31 | 124 |
Msa0320740 | AT1G61960.1 | 32.308 | 260 | 162 | 4 | 36 | 287 | 41 | 294 | 8.32e-31 | 122 |
Msa0320740 | AT1G62085.1 | 34.400 | 250 | 147 | 6 | 47 | 286 | 55 | 297 | 1.07e-29 | 119 |
Msa0320740 | AT1G62085.2 | 34.400 | 250 | 147 | 6 | 47 | 286 | 55 | 297 | 1.07e-29 | 119 |
Msa0320740 | AT3G46950.1 | 32.794 | 247 | 155 | 4 | 47 | 289 | 52 | 291 | 1.35e-29 | 119 |
Msa0320740 | AT5G64950.1 | 27.744 | 328 | 224 | 6 | 58 | 372 | 49 | 376 | 6.47e-28 | 114 |
Msa0320740 | AT1G62110.1 | 30.597 | 268 | 174 | 4 | 30 | 287 | 30 | 295 | 8.56e-28 | 114 |
Msa0320740 | AT1G62010.1 | 28.571 | 315 | 186 | 5 | 80 | 357 | 71 | 383 | 1.27e-25 | 107 |
Msa0320740 | AT1G62150.1 | 29.600 | 250 | 161 | 4 | 46 | 286 | 57 | 300 | 1.82e-23 | 102 |
Msa0320740 | AT5G23930.1 | 24.791 | 359 | 194 | 6 | 47 | 334 | 55 | 408 | 1.72e-21 | 96.3 |
Msa0320740 | AT1G56380.1 | 27.083 | 240 | 138 | 4 | 48 | 287 | 17 | 219 | 1.70e-15 | 77.8 |
Msa0320740 | AT1G56380.2 | 27.083 | 240 | 138 | 4 | 48 | 287 | 28 | 230 | 1.95e-15 | 77.8 |
Find 66 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACTATTCTGTAAAATTCT+AGG | 0.190911 | 2_4:-21476821 | None:intergenic |
GTTAAGCTATTGATTGATTA+TGG | 0.197960 | 2_4:+21476965 | Msa0320740:CDS |
TTCAATTGATAAGATTAATT+TGG | 0.211307 | 2_4:+21477246 | Msa0320740:CDS |
GACCCTTCAACTTCAACTTT+TGG | 0.225478 | 2_4:+21477091 | Msa0320740:CDS |
ATTCTTTGGCACTTTCTAAA+AGG | 0.258538 | 2_4:+21477302 | Msa0320740:CDS |
AGATTATGAAGTCACCTATT+TGG | 0.271993 | 2_4:-21477569 | None:intergenic |
TCAATTGGGTTGGAATTCTT+TGG | 0.276844 | 2_4:+21477288 | Msa0320740:CDS |
TATGATAATGCTGCGTATAT+TGG | 0.279072 | 2_4:-21476684 | None:intergenic |
TTCAGAAGCTGAAGCACCTT+TGG | 0.362617 | 2_4:-21476774 | None:intergenic |
TGACATGCCATTCACCAAAT+AGG | 0.363432 | 2_4:+21477555 | Msa0320740:CDS |
ATTGAAGTCAACAACAATTC+AGG | 0.371659 | 2_4:-21477229 | None:intergenic |
CTTCGCTTCACAGTTCTTTG+AGG | 0.374046 | 2_4:+21474831 | Msa0320740:CDS |
TAGTACTTTGGAGGAAGTTA+AGG | 0.376973 | 2_4:+21477057 | Msa0320740:CDS |
TTAGTTACAGTTTGCAGAAA+AGG | 0.377592 | 2_4:+21477335 | Msa0320740:CDS |
TGAACCGTTTGCTCCGTCTA+AGG | 0.377750 | 2_4:+21477429 | Msa0320740:CDS |
GATGTTATTCGTGCATTTAG+AGG | 0.388931 | 2_4:+21477202 | Msa0320740:CDS |
TTGACAAGACCAGCTATACT+TGG | 0.394866 | 2_4:+21477019 | Msa0320740:CDS |
AATTGATTTCCTTAGTACTT+TGG | 0.395237 | 2_4:+21477045 | Msa0320740:CDS |
CTTCGGAAGAATTGAATTGT+GGG | 0.438443 | 2_4:-21476735 | None:intergenic |
ATGTATGAGTAAAACACTTT+GGG | 0.441511 | 2_4:+21477135 | Msa0320740:CDS |
GAAGTCACCTATTTGGTGAA+TGG | 0.443693 | 2_4:-21477562 | None:intergenic |
TTCACTTTCTTCACAAACCT+TGG | 0.449075 | 2_4:+21476650 | Msa0320740:CDS |
AATGTATGAGTAAAACACTT+TGG | 0.452530 | 2_4:+21477134 | Msa0320740:CDS |
AATGGATGTGGTTGTTGAAA+TGG | 0.453420 | 2_4:+21473619 | None:intergenic |
CTGCAATTTCTTGTGATGAA+AGG | 0.454596 | 2_4:+21477379 | Msa0320740:CDS |
AACTGAGAACATATTTGCTT+AGG | 0.466357 | 2_4:-21477459 | None:intergenic |
TTATTTATTAAAGCTTTATG+AGG | 0.468070 | 2_4:+21477498 | Msa0320740:CDS |
TTAACAGTAGTAAGATTGTA+AGG | 0.474106 | 2_4:-21476941 | None:intergenic |
CATGTCAATGTTCTCCTTGG+TGG | 0.478386 | 2_4:-21477539 | None:intergenic |
TTCTTGTGATGAAAGGTTTG+AGG | 0.479601 | 2_4:+21477386 | Msa0320740:CDS |
AAGGATTGTTCCAAGGGCAT+TGG | 0.488885 | 2_4:+21477354 | Msa0320740:CDS |
TCAATTGATCCAAGTATAGC+TGG | 0.498779 | 2_4:-21477028 | None:intergenic |
TGATTTCCTTAGTACTTTGG+AGG | 0.499163 | 2_4:+21477048 | Msa0320740:CDS |
TTGGACAGGGGACCTTCCGC+CGG | 0.499873 | 2_4:+21474790 | Msa0320740:intron |
TCTGATACCATGATTGCATA+AGG | 0.500320 | 2_4:-21474866 | None:intergenic |
CTTAGGAACATTTCCTTAGA+CGG | 0.503257 | 2_4:-21477442 | None:intergenic |
ACTTCGGAAGAATTGAATTG+TGG | 0.515752 | 2_4:-21476736 | None:intergenic |
AATTGAATTGTGGGTATCTG+AGG | 0.523687 | 2_4:-21476726 | None:intergenic |
TCTTACCTCATCAACACCAT+TGG | 0.525270 | 2_4:+21476554 | Msa0320740:CDS |
CAACATAATTACACAGCTGA+GGG | 0.525854 | 2_4:-21473662 | None:intergenic |
ATTTCCTTAGACGGAGCAAA+CGG | 0.526804 | 2_4:-21477433 | None:intergenic |
TTTGGGTTAATCAATTGGGT+TGG | 0.527975 | 2_4:+21477278 | Msa0320740:CDS |
TAACTTCCTCCAAAGTACTA+AGG | 0.529726 | 2_4:-21477054 | None:intergenic |
AGCAAACGGTTCAACTAAGC+TGG | 0.533205 | 2_4:-21477419 | None:intergenic |
GACCCAAAAGTTGAAGTTGA+AGG | 0.537017 | 2_4:-21477094 | None:intergenic |
AATTGCAGAACCAATGCCCT+TGG | 0.540852 | 2_4:-21477364 | None:intergenic |
TGCAGAAAAGGATTGTTCCA+AGG | 0.541911 | 2_4:+21477347 | Msa0320740:CDS |
GCAGAAAAGGATTGTTCCAA+GGG | 0.547363 | 2_4:+21477348 | Msa0320740:CDS |
TGGCATGTCAATGTTCTCCT+TGG | 0.547892 | 2_4:-21477542 | None:intergenic |
TCCGCCGGTGTCATCTCTGA+AGG | 0.562552 | 2_4:+21474805 | Msa0320740:CDS |
ACCCAAAAGTTGAAGTTGAA+GGG | 0.582729 | 2_4:-21477093 | None:intergenic |
GCTTTGAGAGCTGTTTCACG+AGG | 0.585622 | 2_4:-21476581 | None:intergenic |
CAAAAGCAATCTAGCAATAG+CGG | 0.586332 | 2_4:-21476999 | None:intergenic |
GGATGTGGTTGTTGAAATGG+TGG | 0.589673 | 2_4:+21473622 | Msa0320740:CDS |
TCAACATAATTACACAGCTG+AGG | 0.591713 | 2_4:-21473663 | None:intergenic |
TCAGAGATGACACCGGCGGA+AGG | 0.594445 | 2_4:-21474802 | None:intergenic |
GGAAACCAATGGTGTTGATG+AGG | 0.626364 | 2_4:-21476559 | None:intergenic |
GGTTGTTGAAATGGTGGACG+AGG | 0.634442 | 2_4:+21473628 | Msa0320740:CDS |
CTTTGAGAGCTGTTTCACGA+GGG | 0.649493 | 2_4:-21476580 | None:intergenic |
TCTGAATTGAGAAATGGATG+TGG | 0.659510 | 2_4:+21473607 | None:intergenic |
CGTAAATCTTGCATCCACCA+AGG | 0.669439 | 2_4:+21477525 | Msa0320740:CDS |
TGTTTCACGAGGGAAACCAA+TGG | 0.686052 | 2_4:-21476570 | None:intergenic |
TCCTTCAGAGATGACACCGG+CGG | 0.706068 | 2_4:-21474806 | None:intergenic |
GAGTCCTTCAGAGATGACAC+CGG | 0.731986 | 2_4:-21474809 | None:intergenic |
GGTGTTGATGAGGTAAGAGA+CGG | 0.746081 | 2_4:-21476549 | None:intergenic |
GTATCTGAGGAAAGAAAACG+TGG | 0.765767 | 2_4:-21476713 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAATTTTCTGAAAATATAT+AGG | - | chr2_4:21474326-21474345 | None:intergenic | 10.0% |
!!! | TATATATTTTCAGAAAATTA+TGG | + | chr2_4:21474325-21474344 | Msa0320740:intron | 10.0% |
!!! | ATAAAATAATTTCTTCTTTT+AGG | - | chr2_4:21476367-21476386 | None:intergenic | 10.0% |
!! | AATTACTATAATGAAAATTG+TGG | - | chr2_4:21475196-21475215 | None:intergenic | 15.0% |
!!! | ATTGATATGTAATCTTATTT+TGG | + | chr2_4:21475268-21475287 | Msa0320740:intron | 15.0% |
!!! | TTGATATGTAATCTTATTTT+GGG | + | chr2_4:21475269-21475288 | Msa0320740:intron | 15.0% |
!! | AATTCAATTACATAAAACTT+TGG | - | chr2_4:21475318-21475337 | None:intergenic | 15.0% |
!! | CAAAATTTACTTAAAAAAGA+TGG | - | chr2_4:21475350-21475369 | None:intergenic | 15.0% |
!!! | CATCTTTTTTAAGTAAATTT+TGG | + | chr2_4:21475348-21475367 | Msa0320740:intron | 15.0% |
!!! | AAATTTTGGTGTATATTTTT+AGG | + | chr2_4:21475362-21475381 | Msa0320740:intron | 15.0% |
!! | AAAAAGTAATGATATGTTAT+TGG | + | chr2_4:21475664-21475683 | Msa0320740:intron | 15.0% |
!!! | TTTAAAATTTTGATACATTG+AGG | - | chr2_4:21475853-21475872 | None:intergenic | 15.0% |
!! | TTAAAATTTCGATATAACAA+AGG | + | chr2_4:21476076-21476095 | Msa0320740:intron | 15.0% |
!! | TTCAATTGATAAGATTAATT+TGG | + | chr2_4:21477246-21477265 | Msa0320740:CDS | 15.0% |
!!! | TTATTTATTAAAGCTTTATG+AGG | + | chr2_4:21477498-21477517 | Msa0320740:CDS | 15.0% |
!! | TGGTATTAAAAAGAAAGAAA+AGG | - | chr2_4:21474224-21474243 | None:intergenic | 20.0% |
!!! | CATTTTTAGCAATAAAACAA+TGG | - | chr2_4:21474432-21474451 | None:intergenic | 20.0% |
!! | TAAACAAATTGTGAATAACT+AGG | - | chr2_4:21474480-21474499 | None:intergenic | 20.0% |
!! | TCAACTAATAAGTTCAAAAT+GGG | - | chr2_4:21474569-21474588 | None:intergenic | 20.0% |
!! | CATATTTATATATCTGAATG+AGG | + | chr2_4:21474689-21474708 | Msa0320740:intron | 20.0% |
!! | TCTTTAGTCAACAAAAAAAA+TGG | - | chr2_4:21475247-21475266 | None:intergenic | 20.0% |
!!! | CATATCATTACTTTTTTTTG+AGG | - | chr2_4:21475660-21475679 | None:intergenic | 20.0% |
!!! | AATGACTGTTTTTACTTTAA+GGG | + | chr2_4:21475779-21475798 | Msa0320740:intron | 20.0% |
!!! | TTATTGGTTAAAATAGTCTT+GGG | - | chr2_4:21476035-21476054 | None:intergenic | 20.0% |
!!! | TTTATTGGTTAAAATAGTCT+TGG | - | chr2_4:21476036-21476055 | None:intergenic | 20.0% |
!! | CTAAAATTTCGATATAACAA+AGG | + | chr2_4:21476147-21476166 | Msa0320740:intron | 20.0% |
!! | AATACGTGTAATTAATGTAT+CGG | - | chr2_4:21476413-21476432 | None:intergenic | 20.0% |
!!! | CATGATAAGTTATCTTTTAA+AGG | + | chr2_4:21476435-21476454 | Msa0320740:intron | 20.0% |
!! | AAGAAAGTGAAAAATGAATT+GGG | - | chr2_4:21476641-21476660 | None:intergenic | 20.0% |
!! | GATAGAAAAAATTGAAACTT+CGG | - | chr2_4:21476755-21476774 | None:intergenic | 20.0% |
!!! | TTTCAATTTTTTCTATCCAA+AGG | + | chr2_4:21476758-21476777 | Msa0320740:CDS | 20.0% |
!! | AAACTATTCTGTAAAATTCT+AGG | - | chr2_4:21476824-21476843 | None:intergenic | 20.0% |
!!! | TAGAATTTTACAGAATAGTT+TGG | + | chr2_4:21476823-21476842 | Msa0320740:CDS | 20.0% |
!! | CTCTTATAAAATTCAAAAAG+AGG | - | chr2_4:21476863-21476882 | None:intergenic | 20.0% |
!!! | CTCTTTTTGAATTTTATAAG+AGG | + | chr2_4:21476861-21476880 | Msa0320740:CDS | 20.0% |
!!! | AAGTTGATGTTTTTAAGAAA+TGG | + | chr2_4:21477164-21477183 | Msa0320740:CDS | 20.0% |
!!! | AGTTGATGTTTTTAAGAAAT+GGG | + | chr2_4:21477165-21477184 | Msa0320740:CDS | 20.0% |
! | AGACTAATTTATGACACTAA+AGG | - | chr2_4:21473999-21474018 | None:intergenic | 25.0% |
!! | AGTGTCATAAATTAGTCTAT+AGG | + | chr2_4:21474001-21474020 | Msa0320740:intron | 25.0% |
!!! | TGGAAGTTTTTTTGAACTTT+GGG | + | chr2_4:21474094-21474113 | Msa0320740:intron | 25.0% |
! | TATAATGTCTGAAAAATCAG+CGG | + | chr2_4:21474146-21474165 | Msa0320740:intron | 25.0% |
!! | TCGTAGATTTTCATTAATGT+AGG | + | chr2_4:21474356-21474375 | Msa0320740:intron | 25.0% |
! | TAGCAATAAAACAATGGAAA+AGG | - | chr2_4:21474426-21474445 | None:intergenic | 25.0% |
! | GTCAACTAATAAGTTCAAAA+TGG | - | chr2_4:21474570-21474589 | None:intergenic | 25.0% |
! | TGGATAAAAGATGATCTATA+TGG | + | chr2_4:21475125-21475144 | Msa0320740:intron | 25.0% |
! | GGATAAAAGATGATCTATAT+GGG | + | chr2_4:21475126-21475145 | Msa0320740:intron | 25.0% |
! | GATAAAAGATGATCTATATG+GGG | + | chr2_4:21475127-21475146 | Msa0320740:intron | 25.0% |
! | ATAAAAGATGATCTATATGG+GGG | + | chr2_4:21475128-21475147 | Msa0320740:intron | 25.0% |
! | ACTATAATGAAAATTGTGGT+TGG | - | chr2_4:21475192-21475211 | None:intergenic | 25.0% |
!!! | TATTTTGGGTTTTTGAGTAA+TGG | + | chr2_4:21475283-21475302 | Msa0320740:intron | 25.0% |
!! | TTTAGGCTTAATTACAGTTT+TGG | + | chr2_4:21475379-21475398 | Msa0320740:intron | 25.0% |
!!! | TCAGTTATTGTTTTTGTTAG+GGG | - | chr2_4:21475436-21475455 | None:intergenic | 25.0% |
!!! | CTCAGTTATTGTTTTTGTTA+GGG | - | chr2_4:21475437-21475456 | None:intergenic | 25.0% |
!!! | GAATGACTGTTTTTACTTTA+AGG | + | chr2_4:21475778-21475797 | Msa0320740:intron | 25.0% |
!! | TTCTTGATTTTGCACTTTAT+TGG | - | chr2_4:21476051-21476070 | None:intergenic | 25.0% |
!!! | GTTATATCGAAATTTTAGCT+GGG | - | chr2_4:21476145-21476164 | None:intergenic | 25.0% |
!!! | TGTTATATCGAAATTTTAGC+TGG | - | chr2_4:21476146-21476165 | None:intergenic | 25.0% |
!! | AAAAATGAATTGGGTTTTTG+TGG | - | chr2_4:21476632-21476651 | None:intergenic | 25.0% |
! | GAAGAAAGTGAAAAATGAAT+TGG | - | chr2_4:21476642-21476661 | None:intergenic | 25.0% |
! | TTAACAGTAGTAAGATTGTA+AGG | - | chr2_4:21476944-21476963 | None:intergenic | 25.0% |
!! | GTTAAGCTATTGATTGATTA+TGG | + | chr2_4:21476965-21476984 | Msa0320740:CDS | 25.0% |
!! | AATTGATTTCCTTAGTACTT+TGG | + | chr2_4:21477045-21477064 | Msa0320740:CDS | 25.0% |
! | AATGTATGAGTAAAACACTT+TGG | + | chr2_4:21477134-21477153 | Msa0320740:CDS | 25.0% |
! | ATGTATGAGTAAAACACTTT+GGG | + | chr2_4:21477135-21477154 | Msa0320740:CDS | 25.0% |
!!! | GTTGATGTTTTTAAGAAATG+GGG | + | chr2_4:21477166-21477185 | Msa0320740:CDS | 25.0% |
!!! | TTAATTTGGTGTTGAGTTTT+TGG | + | chr2_4:21477260-21477279 | Msa0320740:CDS | 25.0% |
!!! | TAATTTGGTGTTGAGTTTTT+GGG | + | chr2_4:21477261-21477280 | Msa0320740:CDS | 25.0% |
!!! | AGTTTTTGGGTTAATCAATT+GGG | + | chr2_4:21477274-21477293 | Msa0320740:CDS | 25.0% |
! | AAACTGTAACTAAAAATACG+TGG | - | chr2_4:21477328-21477347 | None:intergenic | 25.0% |
!! | CAAATATGTTCTCAGTTTTA+AGG | + | chr2_4:21477465-21477484 | Msa0320740:CDS | 25.0% |
ATAGGTGTTTGATGAAATTC+TGG | + | chr2_4:21473710-21473729 | Msa0320740:intron | 30.0% | |
!!! | GTTTGATGAAATTCTGGTTT+TGG | + | chr2_4:21473716-21473735 | Msa0320740:intron | 30.0% |
!! | TCAAGGAAAGTATTGTGTAA+GGG | - | chr2_4:21473796-21473815 | None:intergenic | 30.0% |
!! | ATCAAGGAAAGTATTGTGTA+AGG | - | chr2_4:21473797-21473816 | None:intergenic | 30.0% |
AGAACCCAAATTCTTAAATG+TGG | + | chr2_4:21473822-21473841 | Msa0320740:intron | 30.0% | |
GAACCCAAATTCTTAAATGT+GGG | + | chr2_4:21473823-21473842 | Msa0320740:intron | 30.0% | |
TAGTTGCAAATTGTCTTGAT+TGG | + | chr2_4:21473973-21473992 | Msa0320740:intron | 30.0% | |
!!! | TTCTAAGATGCTTCCAATTT+TGG | + | chr2_4:21474054-21474073 | Msa0320740:intron | 30.0% |
!!! | GTGGAAGTTTTTTTGAACTT+TGG | + | chr2_4:21474093-21474112 | Msa0320740:intron | 30.0% |
!!! | GTTTTTTTGAACTTTGGGTT+TGG | + | chr2_4:21474099-21474118 | Msa0320740:intron | 30.0% |
CTAAAATACACTTGTAGAGT+TGG | - | chr2_4:21474187-21474206 | None:intergenic | 30.0% | |
AAACAAACTAGTACCAAATG+CGG | - | chr2_4:21474264-21474283 | None:intergenic | 30.0% | |
ATGAATAGAGCAAGAAACTT+TGG | - | chr2_4:21474522-21474541 | None:intergenic | 30.0% | |
CTCTATTCATGAATCTTGAA+TGG | + | chr2_4:21474532-21474551 | Msa0320740:intron | 30.0% | |
TCATGAATCTTGAATGGAAT+TGG | + | chr2_4:21474538-21474557 | Msa0320740:intron | 30.0% | |
! | GATCATCTTTTATCCAACAT+GGG | - | chr2_4:21475121-21475140 | None:intergenic | 30.0% |
! | AGATCATCTTTTATCCAACA+TGG | - | chr2_4:21475122-21475141 | None:intergenic | 30.0% |
TAAAAGATGATCTATATGGG+GGG | + | chr2_4:21475129-21475148 | Msa0320740:intron | 30.0% | |
! | ATCCCTATAAGCCAATTTTA+TGG | + | chr2_4:21475154-21475173 | Msa0320740:intron | 30.0% |
! | TCCCTATAAGCCAATTTTAT+GGG | + | chr2_4:21475155-21475174 | Msa0320740:intron | 30.0% |
! | TCCCATAAAATTGGCTTATA+GGG | - | chr2_4:21475159-21475178 | None:intergenic | 30.0% |
! | ATCCCATAAAATTGGCTTAT+AGG | - | chr2_4:21475160-21475179 | None:intergenic | 30.0% |
!!! | CAGTTATTGTTTTTGTTAGG+GGG | - | chr2_4:21475435-21475454 | None:intergenic | 30.0% |
!!! | GCTCAGTTATTGTTTTTGTT+AGG | - | chr2_4:21475438-21475457 | None:intergenic | 30.0% |
GACTATTCATTACACATTCA+GGG | - | chr2_4:21475822-21475841 | None:intergenic | 30.0% | |
TGACTATTCATTACACATTC+AGG | - | chr2_4:21475823-21475842 | None:intergenic | 30.0% | |
AATTGTGGGAAAATTGGAAT+GGG | - | chr2_4:21476502-21476521 | None:intergenic | 30.0% | |
AAATTGTGGGAAAATTGGAA+TGG | - | chr2_4:21476503-21476522 | None:intergenic | 30.0% | |
TTGTGAAATTGTGGGAAAAT+TGG | - | chr2_4:21476508-21476527 | None:intergenic | 30.0% | |
TATTGGAATCTGAAAAACCA+AGG | - | chr2_4:21476670-21476689 | None:intergenic | 30.0% | |
! | TATGATAATGCTGCGTATAT+TGG | - | chr2_4:21476687-21476706 | None:intergenic | 30.0% |
!! | ATGTTTTTAAGAAATGGGGT+TGG | + | chr2_4:21477170-21477189 | Msa0320740:CDS | 30.0% |
ATTGAAGTCAACAACAATTC+AGG | - | chr2_4:21477232-21477251 | None:intergenic | 30.0% | |
!!! | GAGTTTTTGGGTTAATCAAT+TGG | + | chr2_4:21477273-21477292 | Msa0320740:CDS | 30.0% |
ATTCTTTGGCACTTTCTAAA+AGG | + | chr2_4:21477302-21477321 | Msa0320740:CDS | 30.0% | |
TTAGTTACAGTTTGCAGAAA+AGG | + | chr2_4:21477335-21477354 | Msa0320740:CDS | 30.0% | |
AACTGAGAACATATTTGCTT+AGG | - | chr2_4:21477462-21477481 | None:intergenic | 30.0% | |
!!! | ATATGTTCTCAGTTTTAAGG+AGG | + | chr2_4:21477468-21477487 | Msa0320740:CDS | 30.0% |
CAACATAATTACACAGCTGA+GGG | - | chr2_4:21473665-21473684 | None:intergenic | 35.0% | |
TCAACATAATTACACAGCTG+AGG | - | chr2_4:21473666-21473685 | None:intergenic | 35.0% | |
CATTGTTTACTGTGACGAAT+AGG | + | chr2_4:21473692-21473711 | Msa0320740:intron | 35.0% | |
TATCCATTCTACATCACATG+CGG | + | chr2_4:21473751-21473770 | Msa0320740:intron | 35.0% | |
CAGCCCACATTTAAGAATTT+GGG | - | chr2_4:21473829-21473848 | None:intergenic | 35.0% | |
CAAATTCTTAAATGTGGGCT+GGG | + | chr2_4:21473828-21473847 | Msa0320740:intron | 35.0% | |
!! | ATTGGAAGCATCTTAGAACT+TGG | - | chr2_4:21474052-21474071 | None:intergenic | 35.0% |
!! | GATGCTTCCAATTTTGGTAA+TGG | + | chr2_4:21474060-21474079 | Msa0320740:intron | 35.0% |
GTTCAAAAAAACTTCCACCA+GGG | - | chr2_4:21474091-21474110 | None:intergenic | 35.0% | |
AGTTCAAAAAAACTTCCACC+AGG | - | chr2_4:21474092-21474111 | None:intergenic | 35.0% | |
TAGGAACTAAGTATACCTTG+CGG | - | chr2_4:21474461-21474480 | None:intergenic | 35.0% | |
TAGAGCAAGAAACTTTGGTT+TGG | - | chr2_4:21474517-21474536 | None:intergenic | 35.0% | |
TGAATCTTGAATGGAATTGG+CGG | + | chr2_4:21474541-21474560 | Msa0320740:intron | 35.0% | |
TGATGTGTTTATGAGACTCT+TGG | + | chr2_4:21474724-21474743 | Msa0320740:intron | 35.0% | |
CCAACACAAATGTTGAGAAA+TGG | - | chr2_4:21474774-21474793 | None:intergenic | 35.0% | |
CCATTTCTCAACATTTGTGT+TGG | + | chr2_4:21474771-21474790 | Msa0320740:intron | 35.0% | |
! | CTTTTGACCTTATGCAATCA+TGG | + | chr2_4:21474859-21474878 | Msa0320740:CDS | 35.0% |
TCTGATACCATGATTGCATA+AGG | - | chr2_4:21474869-21474888 | None:intergenic | 35.0% | |
CTACTGCTTTAATATGCTCA+TGG | + | chr2_4:21474891-21474910 | Msa0320740:intron | 35.0% | |
!!! | ACTCGTCTTAGTTTTGATAG+TGG | + | chr2_4:21474928-21474947 | Msa0320740:intron | 35.0% |
ATTGTTAAAGAGTCCCATGT+TGG | + | chr2_4:21475105-21475124 | Msa0320740:intron | 35.0% | |
CCAACACAATCCCATAAAAT+TGG | - | chr2_4:21475168-21475187 | None:intergenic | 35.0% | |
! | CCAATTTTATGGGATTGTGT+TGG | + | chr2_4:21475165-21475184 | Msa0320740:intron | 35.0% |
!!! | TTTGGGTTTTTGAGTAATGG+TGG | + | chr2_4:21475286-21475305 | Msa0320740:intron | 35.0% |
CGCAACTTTCTGATACTTAA+TGG | - | chr2_4:21475405-21475424 | None:intergenic | 35.0% | |
TGCAAAAGGAGCTTAACATA+GGG | - | chr2_4:21475462-21475481 | None:intergenic | 35.0% | |
! | TTAAGCTCCTTTTGCAGTTT+TGG | + | chr2_4:21475466-21475485 | Msa0320740:intron | 35.0% |
TGCATTGAATGGGTCAAATT+TGG | - | chr2_4:21475501-21475520 | None:intergenic | 35.0% | |
ACTAACTGAGTGCATAATCA+TGG | - | chr2_4:21475881-21475900 | None:intergenic | 35.0% | |
!! | AGGGGTTGATAATGATTTGT+GGG | - | chr2_4:21476290-21476309 | None:intergenic | 35.0% |
TCGTTAACAAGACCCAAAAT+GGG | - | chr2_4:21476318-21476337 | None:intergenic | 35.0% | |
TTCGGAAGTTGTGAAATTGT+GGG | - | chr2_4:21476516-21476535 | None:intergenic | 35.0% | |
ATTCGGAAGTTGTGAAATTG+TGG | - | chr2_4:21476517-21476536 | None:intergenic | 35.0% | |
TTCACTTTCTTCACAAACCT+TGG | + | chr2_4:21476650-21476669 | Msa0320740:CDS | 35.0% | |
AATTGAATTGTGGGTATCTG+AGG | - | chr2_4:21476729-21476748 | None:intergenic | 35.0% | |
CTTCGGAAGAATTGAATTGT+GGG | - | chr2_4:21476738-21476757 | None:intergenic | 35.0% | |
ACTTCGGAAGAATTGAATTG+TGG | - | chr2_4:21476739-21476758 | None:intergenic | 35.0% | |
CAAAAGCAATCTAGCAATAG+CGG | - | chr2_4:21477002-21477021 | None:intergenic | 35.0% | |
TCAATTGATCCAAGTATAGC+TGG | - | chr2_4:21477031-21477050 | None:intergenic | 35.0% | |
TGATTTCCTTAGTACTTTGG+AGG | + | chr2_4:21477048-21477067 | Msa0320740:CDS | 35.0% | |
! | TAACTTCCTCCAAAGTACTA+AGG | - | chr2_4:21477057-21477076 | None:intergenic | 35.0% |
! | TAGTACTTTGGAGGAAGTTA+AGG | + | chr2_4:21477057-21477076 | Msa0320740:CDS | 35.0% |
! | TTGGAGGAAGTTAAGGTTTT+AGG | + | chr2_4:21477064-21477083 | Msa0320740:CDS | 35.0% |
! | TGGAGGAAGTTAAGGTTTTA+GGG | + | chr2_4:21477065-21477084 | Msa0320740:CDS | 35.0% |
! | ACCCTTCAACTTCAACTTTT+GGG | + | chr2_4:21477092-21477111 | Msa0320740:CDS | 35.0% |
ACCCAAAAGTTGAAGTTGAA+GGG | - | chr2_4:21477096-21477115 | None:intergenic | 35.0% | |
GATGTTATTCGTGCATTTAG+AGG | + | chr2_4:21477202-21477221 | Msa0320740:CDS | 35.0% | |
! | TTTGGGTTAATCAATTGGGT+TGG | + | chr2_4:21477278-21477297 | Msa0320740:CDS | 35.0% |
!! | TCAATTGGGTTGGAATTCTT+TGG | + | chr2_4:21477288-21477307 | Msa0320740:CDS | 35.0% |
CTGCAATTTCTTGTGATGAA+AGG | + | chr2_4:21477379-21477398 | Msa0320740:CDS | 35.0% | |
TTCTTGTGATGAAAGGTTTG+AGG | + | chr2_4:21477386-21477405 | Msa0320740:CDS | 35.0% | |
CTTAGGAACATTTCCTTAGA+CGG | - | chr2_4:21477445-21477464 | None:intergenic | 35.0% | |
TAACCGCATGTGATGTAGAA+TGG | - | chr2_4:21473757-21473776 | None:intergenic | 40.0% | |
TTCTACATCACATGCGGTTA+TGG | + | chr2_4:21473757-21473776 | Msa0320740:intron | 40.0% | |
! | ATTTGGGTTCTGTGCAATCA+AGG | - | chr2_4:21473813-21473832 | None:intergenic | 40.0% |
CCAGCCCACATTTAAGAATT+TGG | - | chr2_4:21473830-21473849 | None:intergenic | 40.0% | |
CCAAATTCTTAAATGTGGGC+TGG | + | chr2_4:21473827-21473846 | Msa0320740:intron | 40.0% | |
!!! | TTCCAATTTTGGTAATGGCG+TGG | + | chr2_4:21474065-21474084 | Msa0320740:intron | 40.0% |
AATGTCTGAAAAATCAGCGG+TGG | + | chr2_4:21474149-21474168 | Msa0320740:intron | 40.0% | |
CAAATGCGGTAACTAATGTG+TGG | - | chr2_4:21474250-21474269 | None:intergenic | 40.0% | |
CACACATTAGTTACCGCATT+TGG | + | chr2_4:21474248-21474267 | Msa0320740:intron | 40.0% | |
TAGTTGACACTTGATGCATG+TGG | + | chr2_4:21474582-21474601 | Msa0320740:intron | 40.0% | |
AGTTGACACTTGATGCATGT+GGG | + | chr2_4:21474583-21474602 | Msa0320740:intron | 40.0% | |
TCTCAACATTTGTGTTGGAC+AGG | + | chr2_4:21474776-21474795 | Msa0320740:intron | 40.0% | |
CTCAACATTTGTGTTGGACA+GGG | + | chr2_4:21474777-21474796 | Msa0320740:intron | 40.0% | |
TCAACATTTGTGTTGGACAG+GGG | + | chr2_4:21474778-21474797 | Msa0320740:intron | 40.0% | |
GACACATGAGTTCCTTAAGT+TGG | + | chr2_4:21474954-21474973 | Msa0320740:intron | 40.0% | |
!! | CATGAGTTCCTTAAGTTGGT+TGG | + | chr2_4:21474958-21474977 | Msa0320740:intron | 40.0% |
TTGGTGGAAGTGATGATATG+TGG | + | chr2_4:21474977-21474996 | Msa0320740:intron | 40.0% | |
GTGATGATATGTGGCTGAAA+TGG | + | chr2_4:21474986-21475005 | Msa0320740:intron | 40.0% | |
CAAAAGGAGCTTAACATAGG+GGG | - | chr2_4:21475460-21475479 | None:intergenic | 40.0% | |
GCAAAAGGAGCTTAACATAG+GGG | - | chr2_4:21475461-21475480 | None:intergenic | 40.0% | |
CTGCAAAAGGAGCTTAACAT+AGG | - | chr2_4:21475463-21475482 | None:intergenic | 40.0% | |
!! | GGGTTGATAATGATTTGTGG+GGG | - | chr2_4:21476288-21476307 | None:intergenic | 40.0% |
!! | GGGGTTGATAATGATTTGTG+GGG | - | chr2_4:21476289-21476308 | None:intergenic | 40.0% |
!! | GAGGGGTTGATAATGATTTG+TGG | - | chr2_4:21476291-21476310 | None:intergenic | 40.0% |
! | AACCCCTCTTTTCCCATTTT+GGG | + | chr2_4:21476303-21476322 | Msa0320740:intron | 40.0% |
AGACCCAAAATGGGAAAAGA+GGG | - | chr2_4:21476309-21476328 | None:intergenic | 40.0% | |
AAGACCCAAAATGGGAAAAG+AGG | - | chr2_4:21476310-21476329 | None:intergenic | 40.0% | |
CTCGTTAACAAGACCCAAAA+TGG | - | chr2_4:21476319-21476338 | None:intergenic | 40.0% | |
GGGAAAATTGGAATGGGAAA+GGG | - | chr2_4:21476496-21476515 | None:intergenic | 40.0% | |
TGGGAAAATTGGAATGGGAA+AGG | - | chr2_4:21476497-21476516 | None:intergenic | 40.0% | |
TCTTACCTCATCAACACCAT+TGG | + | chr2_4:21476554-21476573 | Msa0320740:CDS | 40.0% | |
GTATCTGAGGAAAGAAAACG+TGG | - | chr2_4:21476716-21476735 | None:intergenic | 40.0% | |
TTGACAAGACCAGCTATACT+TGG | + | chr2_4:21477019-21477038 | Msa0320740:CDS | 40.0% | |
! | GACCCTTCAACTTCAACTTT+TGG | + | chr2_4:21477091-21477110 | Msa0320740:CDS | 40.0% |
GACCCAAAAGTTGAAGTTGA+AGG | - | chr2_4:21477097-21477116 | None:intergenic | 40.0% | |
!! | TTCAACTTTTGGGTCAGCTT+TGG | + | chr2_4:21477102-21477121 | Msa0320740:CDS | 40.0% |
TGCAGAAAAGGATTGTTCCA+AGG | + | chr2_4:21477347-21477366 | Msa0320740:CDS | 40.0% | |
GCAGAAAAGGATTGTTCCAA+GGG | + | chr2_4:21477348-21477367 | Msa0320740:CDS | 40.0% | |
ATTTCCTTAGACGGAGCAAA+CGG | - | chr2_4:21477436-21477455 | None:intergenic | 40.0% | |
GGATGTGGTTGTTGAAATGG+TGG | + | chr2_4:21473622-21473641 | Msa0320740:CDS | 45.0% | |
CGGTAACTAATGTGTGGCAT+TGG | - | chr2_4:21474244-21474263 | None:intergenic | 45.0% | |
CTAAAAATGCTAGCTCCGCA+AGG | + | chr2_4:21474443-21474462 | Msa0320740:intron | 45.0% | |
CTTCGCTTCACAGTTCTTTG+AGG | + | chr2_4:21474831-21474850 | Msa0320740:CDS | 45.0% | |
!! | GAGTTCCTTAAGTTGGTTGG+TGG | + | chr2_4:21474961-21474980 | Msa0320740:intron | 45.0% |
CACTTCCACCAACCAACTTA+AGG | - | chr2_4:21474969-21474988 | None:intergenic | 45.0% | |
TGGCTGAAATGGTGAAGAGA+AGG | + | chr2_4:21474997-21475016 | Msa0320740:intron | 45.0% | |
ATAGCCATACTAGTGTGTCG+TGG | - | chr2_4:21475069-21475088 | None:intergenic | 45.0% | |
! | ATGGGTCAAATTTGGCTCGA+GGG | - | chr2_4:21475493-21475512 | None:intergenic | 45.0% |
! | AATGGGTCAAATTTGGCTCG+AGG | - | chr2_4:21475494-21475513 | None:intergenic | 45.0% |
!!! | TTGCCATTTTGCTCTGAGCT+GGG | - | chr2_4:21476216-21476235 | None:intergenic | 45.0% |
!!! | ATTGCCATTTTGCTCTGAGC+TGG | - | chr2_4:21476217-21476236 | None:intergenic | 45.0% |
! | CAACCCCTCTTTTCCCATTT+TGG | + | chr2_4:21476302-21476321 | Msa0320740:intron | 45.0% |
GACCCAAAATGGGAAAAGAG+GGG | - | chr2_4:21476308-21476327 | None:intergenic | 45.0% | |
AAATGTTAACCAGAGCCTCG+GGG | - | chr2_4:21476473-21476492 | None:intergenic | 45.0% | |
GAAATGTTAACCAGAGCCTC+GGG | - | chr2_4:21476474-21476493 | None:intergenic | 45.0% | |
GGAAATGTTAACCAGAGCCT+CGG | - | chr2_4:21476475-21476494 | None:intergenic | 45.0% | |
GACGGTGAATGAGTCTGATT+CGG | - | chr2_4:21476534-21476553 | None:intergenic | 45.0% | |
!! | GGTGTTGATGAGGTAAGAGA+CGG | - | chr2_4:21476552-21476571 | None:intergenic | 45.0% |
!! | GGAAACCAATGGTGTTGATG+AGG | - | chr2_4:21476562-21476581 | None:intergenic | 45.0% |
TGTTTCACGAGGGAAACCAA+TGG | - | chr2_4:21476573-21476592 | None:intergenic | 45.0% | |
! | CTTTGAGAGCTGTTTCACGA+GGG | - | chr2_4:21476583-21476602 | None:intergenic | 45.0% |
! | TTCAGAAGCTGAAGCACCTT+TGG | - | chr2_4:21476777-21476796 | None:intergenic | 45.0% |
! | AAGGATTGTTCCAAGGGCAT+TGG | + | chr2_4:21477354-21477373 | Msa0320740:CDS | 45.0% |
AATTGCAGAACCAATGCCCT+TGG | - | chr2_4:21477367-21477386 | None:intergenic | 45.0% | |
AGCAAACGGTTCAACTAAGC+TGG | - | chr2_4:21477422-21477441 | None:intergenic | 45.0% | |
CGTAAATCTTGCATCCACCA+AGG | + | chr2_4:21477525-21477544 | Msa0320740:CDS | 45.0% | |
CATGTCAATGTTCTCCTTGG+TGG | - | chr2_4:21477542-21477561 | None:intergenic | 45.0% | |
TGGCATGTCAATGTTCTCCT+TGG | - | chr2_4:21477545-21477564 | None:intergenic | 45.0% | |
!! | GGTTGTTGAAATGGTGGACG+AGG | + | chr2_4:21473628-21473647 | Msa0320740:CDS | 50.0% |
GGCCACGCCATTACCAAAAT+TGG | - | chr2_4:21474070-21474089 | None:intergenic | 50.0% | |
! | GAGCGTTGCAGGAGATTTAC+AGG | - | chr2_4:21474402-21474421 | None:intergenic | 50.0% |
!! | ATGGAAAAGGAGAGCGTTGC+AGG | - | chr2_4:21474413-21474432 | None:intergenic | 50.0% |
ACACTTGATGCATGTGGGCT+AGG | + | chr2_4:21474588-21474607 | Msa0320740:intron | 50.0% | |
GAGTCCTTCAGAGATGACAC+CGG | - | chr2_4:21474812-21474831 | None:intergenic | 50.0% | |
TGTCCAAAATCGACGAGTCG+GGG | - | chr2_4:21475046-21475065 | None:intergenic | 50.0% | |
GTGTCCAAAATCGACGAGTC+GGG | - | chr2_4:21475047-21475066 | None:intergenic | 50.0% | |
GGTGTCCAAAATCGACGAGT+CGG | - | chr2_4:21475048-21475067 | None:intergenic | 50.0% | |
GACACCACGACACACTAGTA+TGG | + | chr2_4:21475062-21475081 | Msa0320740:intron | 50.0% | |
! | TGGGTCAAATTTGGCTCGAG+GGG | - | chr2_4:21475492-21475511 | None:intergenic | 50.0% |
TGACCCATTCAATGCACACG+TGG | + | chr2_4:21475505-21475524 | Msa0320740:intron | 50.0% | |
CGTCCACGTGTGCATTGAAT+GGG | - | chr2_4:21475511-21475530 | None:intergenic | 50.0% | |
ACGTCCACGTGTGCATTGAA+TGG | - | chr2_4:21475512-21475531 | None:intergenic | 50.0% | |
TGACCCAGCTCAGAGCAAAA+TGG | + | chr2_4:21476210-21476229 | Msa0320740:intron | 50.0% | |
TCTTGTTAACGAGTGCTCCC+AGG | + | chr2_4:21476326-21476345 | Msa0320740:intron | 50.0% | |
CTTGTTAACGAGTGCTCCCA+GGG | + | chr2_4:21476327-21476346 | Msa0320740:intron | 50.0% | |
!! | GGATCCTTAAAGAGTGCCCT+GGG | - | chr2_4:21476346-21476365 | None:intergenic | 50.0% |
!! | AGGATCCTTAAAGAGTGCCC+TGG | - | chr2_4:21476347-21476366 | None:intergenic | 50.0% |
!! | GCTTTGAGAGCTGTTTCACG+AGG | - | chr2_4:21476584-21476603 | None:intergenic | 50.0% |
TGAACCGTTTGCTCCGTCTA+AGG | + | chr2_4:21477429-21477448 | Msa0320740:CDS | 50.0% | |
!!! | TTTTGGTAATGGCGTGGCCC+TGG | + | chr2_4:21474071-21474090 | Msa0320740:intron | 55.0% |
TCCTTCAGAGATGACACCGG+CGG | - | chr2_4:21474809-21474828 | None:intergenic | 55.0% | |
TCCAAAATCGACGAGTCGGG+GGG | - | chr2_4:21475044-21475063 | None:intergenic | 55.0% | |
GTCCAAAATCGACGAGTCGG+GGG | - | chr2_4:21475045-21475064 | None:intergenic | 55.0% | |
CGAGGGGCCAAAACTGCAAA+AGG | - | chr2_4:21475476-21475495 | None:intergenic | 55.0% | |
! | TGCTCCCAGGGCACTCTTTA+AGG | + | chr2_4:21476339-21476358 | Msa0320740:intron | 55.0% |
TCAGAGATGACACCGGCGGA+AGG | - | chr2_4:21474805-21474824 | None:intergenic | 60.0% | |
!! | TCCGCCGGTGTCATCTCTGA+AGG | + | chr2_4:21474805-21474824 | Msa0320740:CDS | 60.0% |
AAAATCGACGAGTCGGGGGG+GGG | - | chr2_4:21475041-21475060 | None:intergenic | 60.0% | |
CAAAATCGACGAGTCGGGGG+GGG | - | chr2_4:21475042-21475061 | None:intergenic | 60.0% | |
CCAAAATCGACGAGTCGGGG+GGG | - | chr2_4:21475043-21475062 | None:intergenic | 60.0% | |
AGGCCTTAACTAGTGCCCCG+AGG | + | chr2_4:21476455-21476474 | Msa0320740:intron | 60.0% | |
! | GAGCCTCGGGGCACTAGTTA+AGG | - | chr2_4:21476461-21476480 | None:intergenic | 60.0% |
TAACTAGTGCCCCGAGGCTC+TGG | + | chr2_4:21476461-21476480 | Msa0320740:intron | 60.0% | |
!! | TGGTAATGGCGTGGCCCTGG+TGG | + | chr2_4:21474074-21474093 | Msa0320740:intron | 65.0% |
TTGGACAGGGGACCTTCCGC+CGG | + | chr2_4:21474790-21474809 | Msa0320740:intron | 65.0% | |
AAATCGACGAGTCGGGGGGG+GGG | - | chr2_4:21475040-21475059 | None:intergenic | 65.0% | |
!!! | CCCCCCCGACTCGTCGATTT+TGG | + | chr2_4:21475040-21475059 | Msa0320740:intron | 65.0% |
AATCGACGAGTCGGGGGGGG+GGG | - | chr2_4:21475039-21475058 | None:intergenic | 70.0% | |
ATCGACGAGTCGGGGGGGGG+GGG | - | chr2_4:21475038-21475057 | None:intergenic | 75.0% | |
! | TCGACGAGTCGGGGGGGGGG+GGG | - | chr2_4:21475037-21475056 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 21473620 | 21477576 | 21473620 | ID=Msa0320740;Name=Msa0320740 |
chr2_4 | mRNA | 21473620 | 21477576 | 21473620 | ID=Msa0320740-mRNA-1;Parent=Msa0320740;Name=Msa0320740-mRNA-1;_AED=0.92;_eAED=0.92;_QI=0|0|0|0.33|1|1|3|0|390 |
chr2_4 | exon | 21473620 | 21473672 | 21473620 | ID=Msa0320740-mRNA-1:exon:7920;Parent=Msa0320740-mRNA-1 |
chr2_4 | exon | 21474798 | 21474880 | 21474798 | ID=Msa0320740-mRNA-1:exon:7921;Parent=Msa0320740-mRNA-1 |
chr2_4 | exon | 21476540 | 21477576 | 21476540 | ID=Msa0320740-mRNA-1:exon:7922;Parent=Msa0320740-mRNA-1 |
chr2_4 | CDS | 21473620 | 21473672 | 21473620 | ID=Msa0320740-mRNA-1:cds;Parent=Msa0320740-mRNA-1 |
chr2_4 | CDS | 21474798 | 21474880 | 21474798 | ID=Msa0320740-mRNA-1:cds;Parent=Msa0320740-mRNA-1 |
chr2_4 | CDS | 21476540 | 21477576 | 21476540 | ID=Msa0320740-mRNA-1:cds;Parent=Msa0320740-mRNA-1 |
Gene Sequence |
Protein sequence |