AlfalfaGEDB | Msa0320740

M. sativa cultivar zhongmu-4 / Msa0320740

KEGG: K15032
GO: -
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320740	XP_013463279.1	92.541	362	25	1	29	390	28	387	0.0	671

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0320740	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012060	Msa0320740	0.813970	1.954080e-51	-8.615850e-47
Msa0017510	Msa0320740	0.842612	2.324552e-58	-8.615850e-47
Msa0046100	Msa0320740	0.803876	2.827231e-49	-8.615850e-47
Msa0068680	Msa0320740	0.804606	1.993078e-49	-8.615850e-47
Msa0101810	Msa0320740	-0.827328	1.662541e-54	-8.615850e-47
Msa0122590	Msa0320740	0.809138	2.194066e-50	-8.615850e-47
Msa0157290	Msa0320740	0.844099	9.324816e-59	-8.615850e-47
Msa0166870	Msa0320740	0.802381	5.763044e-49	-8.615850e-47
Msa0179580	Msa0320740	0.821977	3.030646e-53	-8.615850e-47
Msa0191250	Msa0320740	0.801114	1.048722e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320740	MtrunA17_Chr2g0296191	92.197	346	25	1	29	374	167	510	0.0	639
Msa0320740	MtrunA17_Chr2g0296191	62.575	334	118	3	48	374	664	997	3.42e-134	409
Msa0320740	MtrunA17_Chr2g0296251	59.079	391	120	3	21	373	9	397	1.75e-154	441
Msa0320740	MtrunA17_Chr2g0296221	63.977	347	118	3	48	387	81	427	1.36e-151	435
Msa0320740	MtrunA17_Chr2g0296711	60.920	348	131	2	48	390	55	402	9.60e-149	427
Msa0320740	MtrunA17_Chr2g0296721	61.960	347	128	2	48	390	52	398	8.68e-148	424
Msa0320740	MtrunA17_Chr2g0315731	62.356	348	126	2	48	390	72	419	8.73e-148	425
Msa0320740	MtrunA17_Chr2g0296741	59.483	348	136	2	48	390	72	419	1.68e-143	414
Msa0320740	MtrunA17_Chr2g0296291	57.180	383	126	2	46	390	32	414	1.93e-143	414
Msa0320740	MtrunA17_Chr2g0296231	57.182	362	146	4	35	389	36	395	1.97e-137	397

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0320740	AT5G07900.1	33.133	332	214	4	47	371	69	399	4.99e-59	197
Msa0320740	AT1G21150.1	31.045	335	225	3	46	374	55	389	1.94e-48	169
Msa0320740	AT1G21150.2	31.045	335	225	3	46	374	119	453	7.55e-48	169
Msa0320740	AT1G21150.3	30.294	340	231	3	41	374	14	353	2.42e-47	165
Msa0320740	AT1G61980.3	30.000	350	204	6	47	357	52	399	1.17e-37	140
Msa0320740	AT1G61980.2	30.000	350	204	6	47	357	52	399	1.17e-37	140
Msa0320740	AT1G61980.1	30.000	350	204	6	47	357	52	399	1.17e-37	140
Msa0320740	AT1G61970.2	31.356	354	196	8	46	357	51	399	6.81e-37	139
Msa0320740	AT1G61970.7	31.356	354	196	8	46	357	51	399	6.81e-37	139
Msa0320740	AT1G61970.6	31.356	354	196	8	46	357	51	399	6.81e-37	139

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Find 66 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATTCTGTAAAATTCT+AGG	0.190911	2_4:-21476821	None:intergenic
AACTGAGAACATATTTGCTT+AGG	0.466357	2_4:-21477459	None:intergenic
AAGGATTGTTCCAAGGGCAT+TGG	0.488885	2_4:+21477354	Msa0320740:CDS
AATGGATGTGGTTGTTGAAA+TGG	0.453420	2_4:+21473619	None:intergenic
AATGTATGAGTAAAACACTT+TGG	0.452530	2_4:+21477134	Msa0320740:CDS
AATTGAATTGTGGGTATCTG+AGG	0.523687	2_4:-21476726	None:intergenic
AATTGATTTCCTTAGTACTT+TGG	0.395237	2_4:+21477045	Msa0320740:CDS
AATTGCAGAACCAATGCCCT+TGG	0.540852	2_4:-21477364	None:intergenic
ACCCAAAAGTTGAAGTTGAA+GGG	0.582729	2_4:-21477093	None:intergenic
ACTTCGGAAGAATTGAATTG+TGG	0.515752	2_4:-21476736	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGGTGTTTGATGAAATTC+TGG	+	chr2_4:21473710-21473729	Msa0320740:intron	30.0%
AGAACCCAAATTCTTAAATG+TGG	+	chr2_4:21473822-21473841	Msa0320740:intron	30.0%
GAACCCAAATTCTTAAATGT+GGG	+	chr2_4:21473823-21473842	Msa0320740:intron	30.0%
TAGTTGCAAATTGTCTTGAT+TGG	+	chr2_4:21473973-21473992	Msa0320740:intron	30.0%
CTAAAATACACTTGTAGAGT+TGG	-	chr2_4:21474187-21474206	None:intergenic	30.0%
AAACAAACTAGTACCAAATG+CGG	-	chr2_4:21474264-21474283	None:intergenic	30.0%
ATGAATAGAGCAAGAAACTT+TGG	-	chr2_4:21474522-21474541	None:intergenic	30.0%
CTCTATTCATGAATCTTGAA+TGG	+	chr2_4:21474532-21474551	Msa0320740:intron	30.0%
TCATGAATCTTGAATGGAAT+TGG	+	chr2_4:21474538-21474557	Msa0320740:intron	30.0%
TAAAAGATGATCTATATGGG+GGG	+	chr2_4:21475129-21475148	Msa0320740:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	21473620	21477576	21473620	ID=Msa0320740;Name=Msa0320740
chr2_4	mRNA	21473620	21477576	21473620	ID=Msa0320740-mRNA-1;Parent=Msa0320740;Name=Msa0320740-mRNA-1;_AED=0.92;_eAED=0.92;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|390
chr2_4	exon	21473620	21473672	21473620	ID=Msa0320740-mRNA-1:exon:7920;Parent=Msa0320740-mRNA-1
chr2_4	exon	21474798	21474880	21474798	ID=Msa0320740-mRNA-1:exon:7921;Parent=Msa0320740-mRNA-1
chr2_4	exon	21476540	21477576	21476540	ID=Msa0320740-mRNA-1:exon:7922;Parent=Msa0320740-mRNA-1
chr2_4	CDS	21473620	21473672	21473620	ID=Msa0320740-mRNA-1:cds;Parent=Msa0320740-mRNA-1
chr2_4	CDS	21474798	21474880	21474798	ID=Msa0320740-mRNA-1:cds;Parent=Msa0320740-mRNA-1
chr2_4	CDS	21476540	21477576	21476540	ID=Msa0320740-mRNA-1:cds;Parent=Msa0320740-mRNA-1

Gene Sequence

>Msa0320740

ATGGATGTGGTTGTTGAAATGGTGGACGAGGCTTCTGATAAACCCTCAGCTGTGGGACCTTCCGCCGGTGTCATCTCTGAAGGACTCTTCGCTTCACAGTTCTTTGAGGCAACACTTTTGACCTTATGCAATCATGACTCATTCACCGTCTCTTACCTCATCAACACCATTGGTTTCCCTCGTGAAACAGCTCTCAAAGCTTCAAAACGACTTCGTTTCAACTCTCCACAAAAACCCAATTCATTTTTCACTTTCTTCACAAACCTTGGTTTTTCAGATTCCAATATACGCAGCATTATCATAAAACAACCACGTTTTCTTTCCTCAGATACCCACAATTCAATTCTTCCGAAGTTTCAATTTTTTCTATCCAAAGGTGCTTCAGCTTCTGAAATCGCGTGTTTGTTAGCAGCGAATCCTAGAATTTTACAGAATAGTTTGGAGAATAGAATAATTCCTCTTTTTGAATTTTATAAGAGGTTTTTTAAATCTGATAAAGCTACAATTTGTTGCATCATTCGAAATTTGATATCTTTGCCTTACAATCTTACTACTGTTAATGTTAAGCTATTGATTGATTATGGAGTTTGTGATTCCGCTATTGCTAGATTGCTTTTGACAAGACCAGCTATACTTGGATCAATTGATTTCCTTAGTACTTTGGAGGAAGTTAAGGTTTTAGGGTTTGACCCTTCAACTTCAACTTTTGGGTCAGCTTTGGTTGCAAAGAAATGTATGAGTAAAACACTTTGGGATGAGAAAGTTGATGTTTTTAAGAAATGGGGTTGGTCTGATGAAGATGTTATTCGTGCATTTAGAGGTCGTCCTGAATTGTTGTTGACTTCAATTGATAAGATTAATTTGGTGTTGAGTTTTTGGGTTAATCAATTGGGTTGGAATTCTTTGGCACTTTCTAAAAGGCCACGTATTTTTAGTTACAGTTTGCAGAAAAGGATTGTTCCAAGGGCATTGGTTCTGCAATTTCTTGTGATGAAAGGTTTGAGGAAAAAGAATGCCAGCTTAGTTGAACCGTTTGCTCCGTCTAAGGAAATGTTCCTAAGCAAATATGTTCTCAGTTTTAAGGAGGATTCTGATTATTTATTAAAGCTTTATGAGGAAAACGTAAATCTTGCATCCACCAAGGAGAACATTGACATGCCATTCACCAAATAG

Protein sequence

>Msa0320740

MDVVVEMVDEASDKPSAVGPSAGVISEGLFASQFFEATLLTLCNHDSFTVSYLINTIGFPRETALKASKRLRFNSPQKPNSFFTFFTNLGFSDSNIRSIIIKQPRFLSSDTHNSILPKFQFFLSKGASASEIACLLAANPRILQNSLENRIIPLFEFYKRFFKSDKATICCIIRNLISLPYNLTTVNVKLLIDYGVCDSAIARLLLTRPAILGSIDFLSTLEEVKVLGFDPSTSTFGSALVAKKCMSKTLWDEKVDVFKKWGWSDEDVIRAFRGRPELLLTSIDKINLVLSFWVNQLGWNSLALSKRPRIFSYSLQKRIVPRALVLQFLVMKGLRKKNASLVEPFAPSKEMFLSKYVLSFKEDSDYLLKLYEENVNLASTKENIDMPFTK*