AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1291450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1291450 MtrunA17_Chr8g0365921 94.954 218 11 0 1 218 1 218 9.94e-158 435
Msa1291450 MtrunA17_Chr1g0193061 68.182 220 65 4 1 216 1 219 2.66e-106 305
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1291450 AT1G23440.1 70.642 218 63 1 1 218 1 217 4.80e-114 325
Msa1291450 AT1G23440.3 70.642 218 63 1 1 218 1 217 4.80e-114 325
Msa1291450 AT1G56700.1 62.100 219 81 2 1 218 1 218 1.24e-99 288
Msa1291450 AT1G56700.2 62.100 219 81 2 1 218 1 218 1.24e-99 288
Msa1291450 AT1G56700.4 62.100 219 81 2 1 218 1 218 1.24e-99 288
Msa1291450 AT1G56700.3 60.526 190 73 2 30 218 1 189 1.59e-82 244
Msa1291450 AT1G23440.2 62.222 90 34 0 1 90 1 90 4.67e-35 120

Find 86 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATAAATAATTTGTTAT+TGG 0.144719 8_3:-46789670 Msa1291450:three_prime_UTR
AATATTGAAATCCTTGAAAA+AGG 0.209948 8_3:-46790135 Msa1291450:CDS
ATAACCTCTGTAGGGTTTAT+TGG 0.218695 8_3:+46792799 None:intergenic
AAAATTACAATTCATGTAAC+TGG 0.219675 8_3:-46792844 Msa1291450:CDS
AGGTTATTGTTAATAATCTT+AGG 0.220188 8_3:-46792783 Msa1291450:CDS
GTCTTAAGATGATTAGCTTT+TGG 0.267152 8_3:-46789260 Msa1291450:three_prime_UTR
TTCCGCTGTTCTGATGAATT+AGG 0.270479 8_3:-46791418 Msa1291450:CDS
GAGATTTACAGCCTCTCTTT+TGG 0.294280 8_3:-46789958 Msa1291450:CDS
TCATGACATTCACATGTAAA+AGG 0.303547 8_3:+46789376 None:intergenic
AATTCATGAACATTGGTTCT+TGG 0.304667 8_3:-46789745 Msa1291450:three_prime_UTR
TGACACACATGTTGGCAAAA+AGG 0.318426 8_3:-46789627 Msa1291450:three_prime_UTR
TTGGAAGGAAGTGGAATATA+AGG 0.336358 8_3:-46789411 Msa1291450:three_prime_UTR
CCTCCATCCTCAAGGACTAT+TGG 0.368174 8_3:+46791237 None:intergenic
CTTCCAGTTGGTGTTACTCT+TGG 0.368291 8_3:-46792739 Msa1291450:CDS
AGAGTAATGCAAATGTTGTT+TGG 0.368333 8_3:-46792627 Msa1291450:CDS
AAGAATTCAGAATTCAGAAA+TGG 0.372313 8_3:-46792884 Msa1291450:exon
GACTGCCATGTCCTGTCATC+TGG 0.374311 8_3:-46789884 Msa1291450:three_prime_UTR
TTATCTTCCAAGACTGGTTA+AGG 0.378217 8_3:-46789282 Msa1291450:three_prime_UTR
TACATGTGAATGTCATGATA+AGG 0.407513 8_3:-46789371 Msa1291450:three_prime_UTR
CTTAAGACCTTAACCAGTCT+TGG 0.408357 8_3:+46789275 None:intergenic
ATGTGTATTACCACTCTCTT+CGG 0.421496 8_3:-46790058 Msa1291450:CDS
ACTGTTGAGTCAACCTTGTA+TGG 0.423818 8_3:-46789513 Msa1291450:three_prime_UTR
ATTTATGCTTCAGCTTCACT+TGG 0.429836 8_3:-46791500 Msa1291450:intron
TTTATGCTTCAGCTTCACTT+GGG 0.439902 8_3:-46791499 Msa1291450:intron
AGGGATTATGTTGAAAAGAA+AGG 0.447369 8_3:-46792763 Msa1291450:CDS
CTTCCAAGAGTAACACCAAC+TGG 0.451339 8_3:+46792736 None:intergenic
GGTTATTGTTAATAATCTTA+GGG 0.451439 8_3:-46792782 Msa1291450:CDS
TTTCTTCAATTGGAAGGAAG+TGG 0.454931 8_3:-46789420 Msa1291450:three_prime_UTR
CTGTTTGGAGAAAATGCCAC+TGG 0.459133 8_3:+46793389 None:intergenic
TTGCTTAGTGTGCTTACGGT+TGG 0.459555 8_3:+46789603 None:intergenic
TTATTAACAATAACCTCTGT+AGG 0.460484 8_3:+46792790 None:intergenic
ACTGGGTTTAAGAAGTTTCA+AGG 0.460584 8_3:-46792826 Msa1291450:CDS
AAGGTTTGCCATTGAGCGGT+TGG 0.461153 8_3:-46791458 Msa1291450:CDS
GAGTAATGCAAATGTTGTTT+GGG 0.463728 8_3:-46792626 Msa1291450:intron
CATGATAAGGTTATAGTTGT+CGG 0.468378 8_3:-46789358 Msa1291450:three_prime_UTR
GATTTCAATATTGCATCAAC+GGG 0.475315 8_3:+46790146 None:intergenic
AGAATTCAGAATTCAGAAAT+GGG 0.477928 8_3:-46792883 Msa1291450:exon
GTCGGTAAAGTTAGTATATG+TGG 0.490011 8_3:-46789340 Msa1291450:three_prime_UTR
TGCACTATTCTTGACGTGGC+TGG 0.492051 8_3:-46792712 Msa1291450:CDS
GGATTTCAATATTGCATCAA+CGG 0.495159 8_3:+46790145 None:intergenic
AAGAAGAAAGCAATGCTTTG+CGG 0.495683 8_3:+46793345 None:intergenic
GGAATCTGTTGTGTCGAAAA+CGG 0.508223 8_3:-46792656 Msa1291450:CDS
CTCGTGTGATTAGTGACAGC+GGG 0.510285 8_3:+46793449 None:intergenic
TGGGCATTATCTTCCAAGAC+TGG 0.515621 8_3:-46789288 Msa1291450:three_prime_UTR
TTATGCTTCAGCTTCACTTG+GGG 0.520510 8_3:-46791498 Msa1291450:intron
TTTCGACACAACAGATTCCA+TGG 0.522218 8_3:+46792660 None:intergenic
GTTTGCCATTGAGCGGTTGG+CGG 0.523269 8_3:-46791455 Msa1291450:CDS
TCTTCGGTTCGCAGAACAGA+AGG 0.529048 8_3:-46790042 Msa1291450:CDS
AATTCAGAAATGGGATCTGA+AGG 0.532059 8_3:-46792874 Msa1291450:exon
ATTCTTGACGTGGCTGGTGA+TGG 0.533255 8_3:-46792706 Msa1291450:CDS
TACATACACAACCAGATGAC+AGG 0.536660 8_3:+46789873 None:intergenic
CTGCAAGGTTTGCCATTGAG+CGG 0.540890 8_3:-46791462 Msa1291450:CDS
GTATAATAATTCATGAACAT+TGG 0.542943 8_3:-46789752 Msa1291450:three_prime_UTR
AAACTGTACTCAACCATACA+AGG 0.543154 8_3:+46789500 None:intergenic
TATTAACAATAACCTCTGTA+GGG 0.552390 8_3:+46792791 None:intergenic
AAATTACAATTCATGTAACT+GGG 0.560230 8_3:-46792843 Msa1291450:CDS
GAGAAATTCCTCCATCCTCA+AGG 0.563765 8_3:+46791229 None:intergenic
ATTCACCGCCAACCGCTCAA+TGG 0.566870 8_3:+46791450 None:intergenic
TATGCTTCAGCTTCACTTGG+GGG 0.574889 8_3:-46791497 Msa1291450:intron
GTCACACTTCGTGAATTCCC+AGG 0.577319 8_3:-46793255 Msa1291450:intron
TCCTCAGCTTTATCAGACCA+TGG 0.578488 8_3:-46792677 Msa1291450:CDS
GAAAAGAAAGGTCTTCCAGT+TGG 0.590107 8_3:-46792751 Msa1291450:CDS
GTACCAATAGTCCTTGAGGA+TGG 0.605270 8_3:-46791240 Msa1291450:CDS
GATTGCACAGATATATATGC+TGG 0.605384 8_3:-46789723 Msa1291450:three_prime_UTR
TTATTAACATGCAGAAGCAA+TGG 0.607143 8_3:+46789932 None:intergenic
GCAAGTACCAATAGTCCTTG+AGG 0.613468 8_3:-46791244 Msa1291450:CDS
CCAATAGTCCTTGAGGATGG+AGG 0.618477 8_3:-46791237 Msa1291450:CDS
AGGAATTTCTCGAACAAGAG+AGG 0.621029 8_3:-46791217 Msa1291450:intron
GGGTGAACAGTGGAGCTGCA+AGG 0.626140 8_3:-46791477 Msa1291450:CDS
ATTCAGAAATGGGATCTGAA+GGG 0.630200 8_3:-46792873 Msa1291450:exon
CTTCGGTTCGCAGAACAGAA+GGG 0.630794 8_3:-46790041 Msa1291450:CDS
GCTGTTCTGATGAATTAGGA+TGG 0.630988 8_3:-46791414 Msa1291450:CDS
CACAACCAGATGACAGGACA+TGG 0.632247 8_3:+46789879 None:intergenic
AATTGATTGAATTGTATGCA+AGG 0.637455 8_3:-46789906 Msa1291450:three_prime_UTR
AGCAATGGCCTCCAAAAGAG+AGG 0.639282 8_3:+46789947 None:intergenic
AAGTTGCACTATTCTTGACG+TGG 0.643245 8_3:-46792716 Msa1291450:CDS
TCCATGGTCTGATAAAGCTG+AGG 0.663058 8_3:+46792676 None:intergenic
GGCTATATTTGTGTATGACT+AGG 0.670813 8_3:-46789459 Msa1291450:three_prime_UTR
ATATTTGTGTATGACTAGGA+TGG 0.674241 8_3:-46789455 Msa1291450:three_prime_UTR
ATCCTAATTCATCAGAACAG+CGG 0.674516 8_3:+46791416 None:intergenic
TCTCGTGTGATTAGTGACAG+CGG 0.675394 8_3:+46793448 None:intergenic
TGTTTGGAGAAAATGCCACT+GGG 0.680530 8_3:+46793390 None:intergenic
GTGATGATATCAGTCGACGC+AGG 0.691901 8_3:-46790098 Msa1291450:CDS
GTTCTGCGAACCGAAGAGAG+TGG 0.713903 8_3:+46790048 None:intergenic
AGTGCCAATAAACCCTACAG+AGG 0.735762 8_3:-46792803 Msa1291450:CDS
TCACACGAGAAACACGACAG+TGG 0.737839 8_3:-46793435 Msa1291450:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAAATTAATTAAACATA+AGG + chr8_3:46789548-46789567 None:intergenic 10.0%
!!! ATTTATTACTACAATTTTAA+AGG + chr8_3:46790480-46790499 None:intergenic 10.0%
!!! TTATTTTTTATAGATGAAAT+TGG - chr8_3:46791332-46791351 Msa1291450:intron 10.0%
!!! AGAAATAAATAATTTGTTAT+TGG - chr8_3:46793023-46793042 Msa1291450:intron 10.0%
!! TAAAAAGTTTAAACGAAAAT+TGG - chr8_3:46789777-46789796 Msa1291450:three_prime_UTR 15.0%
!! AAAAAGTTTAAACGAAAATT+GGG - chr8_3:46789778-46789797 Msa1291450:three_prime_UTR 15.0%
!!! TTTATTTTGTCTTTTGTTAT+AGG - chr8_3:46790233-46790252 Msa1291450:intron 15.0%
!! AATAAATAGCATATAAGTAT+AGG - chr8_3:46790493-46790512 Msa1291450:intron 15.0%
!!! TTTCATTTTGTTTAATGTAT+AGG - chr8_3:46791592-46791611 Msa1291450:intron 15.0%
!!! TTCATTTTGTTTAATGTATA+GGG - chr8_3:46791593-46791612 Msa1291450:intron 15.0%
!!! AAAAAACATTTTTATTTACC+CGG - chr8_3:46791909-46791928 Msa1291450:intron 15.0%
!!! TAAGGTAGAAATTTTATATT+GGG + chr8_3:46792198-46792217 None:intergenic 15.0%
!!! TTAAGGTAGAAATTTTATAT+TGG + chr8_3:46792199-46792218 None:intergenic 15.0%
!!! AATTATTTATTTCTTTTGCT+TGG + chr8_3:46793017-46793036 None:intergenic 15.0%
!!! TTTTATACAAAACATTTGAA+TGG - chr8_3:46793213-46793232 Msa1291450:intron 15.0%
!!! TGTATTTTATTTTCTTCAAT+TGG - chr8_3:46793263-46793282 Msa1291450:five_prime_UTR 15.0%
!!! AAGAAAAAAAAAAGTATATG+TGG - chr8_3:46793385-46793404 Msa1291450:five_prime_UTR 15.0%
!!! AGAAAAAAAAAAGTATATGT+GGG - chr8_3:46793386-46793405 Msa1291450:five_prime_UTR 15.0%
!!! ACATGAATTGTAATTTTCTT+TGG + chr8_3:46789846-46789865 None:intergenic 20.0%
!! AAAATTACAATTCATGTAAC+TGG - chr8_3:46789849-46789868 Msa1291450:three_prime_UTR 20.0%
!! AAATTACAATTCATGTAACT+GGG - chr8_3:46789850-46789869 Msa1291450:three_prime_UTR 20.0%
!! AGGTTATTGTTAATAATCTT+AGG - chr8_3:46789910-46789929 Msa1291450:three_prime_UTR 20.0%
!! GGTTATTGTTAATAATCTTA+GGG - chr8_3:46789911-46789930 Msa1291450:three_prime_UTR 20.0%
!! ATTGAATTGCATTAGAAATT+TGG - chr8_3:46790612-46790631 Msa1291450:intron 20.0%
!! AAACAAAATAACACTCAATA+AGG + chr8_3:46790774-46790793 None:intergenic 20.0%
!! TAAAAATCTCATAATTAACG+AGG + chr8_3:46790829-46790848 None:intergenic 20.0%
!! TTCTATTATCAAAATAATCC+AGG + chr8_3:46791128-46791147 None:intergenic 20.0%
!! ACGTTAATGTTGTATTAAAT+TGG - chr8_3:46791724-46791743 Msa1291450:intron 20.0%
!! AACGTTAATGTTGTATTAAT+TGG - chr8_3:46791772-46791791 Msa1291450:intron 20.0%
!! CTTATTAAGGATTCAAAAAA+TGG - chr8_3:46792105-46792124 Msa1291450:intron 20.0%
!! AATATTGAAATCCTTGAAAA+AGG - chr8_3:46792558-46792577 Msa1291450:intron 20.0%
!! ATATTGAAATCCTTGAAAAA+GGG - chr8_3:46792559-46792578 Msa1291450:intron 20.0%
!! GTATAATAATTCATGAACAT+TGG - chr8_3:46792941-46792960 Msa1291450:intron 20.0%
!!! TTTTATTTTCTTCAATTGGA+AGG - chr8_3:46793267-46793286 Msa1291450:five_prime_UTR 20.0%
! ACATGAAAAAGAGAGAAAAA+TGG + chr8_3:46789466-46789485 None:intergenic 25.0%
! AAGTGATCAATTTAGTGAAA+GGG - chr8_3:46789629-46789648 Msa1291450:three_prime_UTR 25.0%
! AAGAATTCAGAATTCAGAAA+TGG - chr8_3:46789809-46789828 Msa1291450:three_prime_UTR 25.0%
! AGAATTCAGAATTCAGAAAT+GGG - chr8_3:46789810-46789829 Msa1291450:three_prime_UTR 25.0%
! TATTAACAATAACCTCTGTA+GGG + chr8_3:46789905-46789924 None:intergenic 25.0%
! TTATTAACAATAACCTCTGT+AGG + chr8_3:46789906-46789925 None:intergenic 25.0%
! GTTGAAAACAGCTTATAAAT+TGG + chr8_3:46790161-46790180 None:intergenic 25.0%
! ATAGCATAAACAATTGTCAT+AGG + chr8_3:46790412-46790431 None:intergenic 25.0%
!! ATGAGATTTTTATAACTCTG+TGG - chr8_3:46790837-46790856 Msa1291450:intron 25.0%
!! TGAGATTTTTATAACTCTGT+GGG - chr8_3:46790838-46790857 Msa1291450:intron 25.0%
! AACATTTCGCTAAACAATAA+TGG - chr8_3:46790960-46790979 Msa1291450:intron 25.0%
! ATGTTGTAAAATAGCAGTTA+TGG + chr8_3:46791025-46791044 None:intergenic 25.0%
!!! ACTGCTATTTTACAACATTA+TGG - chr8_3:46791027-46791046 Msa1291450:intron 25.0%
!!! CTGCTATTTTACAACATTAT+GGG - chr8_3:46791028-46791047 Msa1291450:intron 25.0%
! GATTATATACTCATATTTCC+TGG - chr8_3:46791107-46791126 Msa1291450:intron 25.0%
!!! TGTATTAAATTGGTTTTGTG+AGG - chr8_3:46791734-46791753 Msa1291450:intron 25.0%
! AATGTTGTATTAATTGGTTG+AGG - chr8_3:46791778-46791797 Msa1291450:intron 25.0%
! ATGTTGTATTAATTGGTTGA+GGG - chr8_3:46791779-46791798 Msa1291450:intron 25.0%
! AGAGAAAGAACAAATCAATA+AGG - chr8_3:46791880-46791899 Msa1291450:intron 25.0%
! GGCACTTGATAAAAAATTTA+AGG + chr8_3:46792216-46792235 None:intergenic 25.0%
! TTAAAGATTCAAATGACTCA+TGG + chr8_3:46792378-46792397 None:intergenic 25.0%
! CATTTGAATCTTTAAATCGA+TGG - chr8_3:46792383-46792402 Msa1291450:intron 25.0%
! ACAAAAAATAGTAGCAACTT+AGG + chr8_3:46792509-46792528 None:intergenic 25.0%
!!! ATAATCTTTTCCCTTTTTCA+AGG + chr8_3:46792572-46792591 None:intergenic 25.0%
!!! TCATCGATTTTCGAAAATAA+GGG + chr8_3:46792703-46792722 None:intergenic 25.0%
!!! TTCATCGATTTTCGAAAATA+AGG + chr8_3:46792704-46792723 None:intergenic 25.0%
! AATTGATTGAATTGTATGCA+AGG - chr8_3:46792787-46792806 Msa1291450:CDS 25.0%
! GTAATATTTTCATATCCCAG+TGG - chr8_3:46789288-46789307 Msa1291450:three_prime_UTR 30.0%
!! TGTTTGACTTTTCTTCTGTT+TGG + chr8_3:46789322-46789341 None:intergenic 30.0%
AAGAGACAGAGAAACATAAT+TGG + chr8_3:46789502-46789521 None:intergenic 30.0%
TAGCAGAAATTAAGATTGTG+TGG + chr8_3:46789525-46789544 None:intergenic 30.0%
GAAGTGATCAATTTAGTGAA+AGG - chr8_3:46789628-46789647 Msa1291450:three_prime_UTR 30.0%
AGTGATCAATTTAGTGAAAG+GGG - chr8_3:46789630-46789649 Msa1291450:three_prime_UTR 30.0%
AGGGATTATGTTGAAAAGAA+AGG - chr8_3:46789930-46789949 Msa1291450:exon 30.0%
AGAGTAATGCAAATGTTGTT+TGG - chr8_3:46790066-46790085 Msa1291450:CDS 30.0%
! GAGTAATGCAAATGTTGTTT+GGG - chr8_3:46790067-46790086 Msa1291450:CDS 30.0%
TCTCTAGTGTCAATTTAGAT+GGG + chr8_3:46790310-46790329 None:intergenic 30.0%
GTACTATCGTATAATCTGTT+TGG + chr8_3:46790458-46790477 None:intergenic 30.0%
! TATCATTTTCACCACATTTC+TGG - chr8_3:46790580-46790599 Msa1291450:intron 30.0%
!! ATTTGTTTCTACCAGAAATG+TGG + chr8_3:46790594-46790613 None:intergenic 30.0%
TGTCAATTGCATAACAGTAA+TGG + chr8_3:46790751-46790770 None:intergenic 30.0%
!! ATAACGAGAGTACTTAGAAA+CGG + chr8_3:46790801-46790820 None:intergenic 30.0%
AAGGAAAATGAAGATATGAG+AGG + chr8_3:46791171-46791190 None:intergenic 30.0%
GAAATTGGAAAAAAGCTACA+AGG - chr8_3:46791347-46791366 Msa1291450:intron 30.0%
AACTCAGATAATGCAAAACA+TGG + chr8_3:46791397-46791416 None:intergenic 30.0%
! TACTTGCTGAAAAGGAAAAT+TGG + chr8_3:46791436-46791455 None:intergenic 30.0%
! CATGTTGGATTGCATTTTAT+AGG - chr8_3:46791542-46791561 Msa1291450:intron 30.0%
ATAAAGCTTACAAAATCCTC+AGG - chr8_3:46791664-46791683 Msa1291450:intron 30.0%
AAAATCCTCAGGTCATAAAT+TGG - chr8_3:46791675-46791694 Msa1291450:intron 30.0%
AACCTTGGTTCAAAAGTAAA+AGG - chr8_3:46791968-46791987 Msa1291450:intron 30.0%
!! ATCCTTTTACTTTTGAACCA+AGG + chr8_3:46791973-46791992 None:intergenic 30.0%
!!! ATTTTTTATCAAGTGCCCTT+AGG - chr8_3:46792219-46792238 Msa1291450:intron 30.0%
!!! TTTTTTATCAAGTGCCCTTA+GGG - chr8_3:46792220-46792239 Msa1291450:intron 30.0%
GATTTCAATATTGCATCAAC+GGG + chr8_3:46792550-46792569 None:intergenic 30.0%
GGATTTCAATATTGCATCAA+CGG + chr8_3:46792551-46792570 None:intergenic 30.0%
TTATTAACATGCAGAAGCAA+TGG + chr8_3:46792764-46792783 None:intergenic 30.0%
!! AATTCATGAACATTGGTTCT+TGG - chr8_3:46792948-46792967 Msa1291450:intron 30.0%
! ATTTTTGCTTAGTGTGCTTA+CGG + chr8_3:46793097-46793116 None:intergenic 30.0%
ATATTTGTGTATGACTAGGA+TGG - chr8_3:46793238-46793257 Msa1291450:intron 30.0%
TCATGACATTCACATGTAAA+AGG + chr8_3:46793320-46793339 None:intergenic 30.0%
TACATGTGAATGTCATGATA+AGG - chr8_3:46793322-46793341 Msa1291450:five_prime_UTR 30.0%
CATGATAAGGTTATAGTTGT+CGG - chr8_3:46793335-46793354 Msa1291450:five_prime_UTR 30.0%
!!! GTCTTAAGATGATTAGCTTT+TGG - chr8_3:46793433-46793452 Msa1291450:five_prime_UTR 30.0%
AAGAAGAAAGCAATGCTTTG+CGG + chr8_3:46789351-46789370 None:intergenic 35.0%
! CGAAGTGTGACAATTTTGTT+TGG + chr8_3:46789429-46789448 None:intergenic 35.0%
AAGAGAGAAAAATGGTACCT+GGG + chr8_3:46789458-46789477 None:intergenic 35.0%
AAAGAGAGAAAAATGGTACC+TGG + chr8_3:46789459-46789478 None:intergenic 35.0%
AATTCAGAAATGGGATCTGA+AGG - chr8_3:46789819-46789838 Msa1291450:three_prime_UTR 35.0%
ATTCAGAAATGGGATCTGAA+GGG - chr8_3:46789820-46789839 Msa1291450:three_prime_UTR 35.0%
ACTGGGTTTAAGAAGTTTCA+AGG - chr8_3:46789867-46789886 Msa1291450:three_prime_UTR 35.0%
ATAACCTCTGTAGGGTTTAT+TGG + chr8_3:46789897-46789916 None:intergenic 35.0%
CTCTCTAGTGTCAATTTAGA+TGG + chr8_3:46790311-46790330 None:intergenic 35.0%
TGCTAGACATTGTAACACAT+CGG - chr8_3:46790693-46790712 Msa1291450:intron 35.0%
GTTATAGGGCTATAGTATAG+TGG + chr8_3:46790998-46791017 None:intergenic 35.0%
CATTATGGGTAACCAATGAT+CGG - chr8_3:46791042-46791061 Msa1291450:intron 35.0%
ACTCAAAATCTACCGATCAT+TGG + chr8_3:46791057-46791076 None:intergenic 35.0%
GAAGCTGAAGCATAAATTCA+AGG + chr8_3:46791190-46791209 None:intergenic 35.0%
ATTTATGCTTCAGCTTCACT+TGG - chr8_3:46791193-46791212 Msa1291450:intron 35.0%
TTTATGCTTCAGCTTCACTT+GGG - chr8_3:46791194-46791213 Msa1291450:intron 35.0%
ATCCTAATTCATCAGAACAG+CGG + chr8_3:46791280-46791299 None:intergenic 35.0%
! AGCTACAAGGTTTTCTTGTA+TGG - chr8_3:46791360-46791379 Msa1291450:intron 35.0%
! ACTATTGGTACTTGCTGAAA+AGG + chr8_3:46791444-46791463 None:intergenic 35.0%
TCCACGTTAGTCAGAAATAA+AGG - chr8_3:46791628-46791647 Msa1291450:intron 35.0%
CAAAACCAATTTATGACCTG+AGG + chr8_3:46791683-46791702 None:intergenic 35.0%
!!! GGTCATAAATTGGTTTTGTG+AGG - chr8_3:46791685-46791704 Msa1291450:intron 35.0%
AACCATACAAGTCTATAACC+GGG + chr8_3:46791930-46791949 None:intergenic 35.0%
CAACCATACAAGTCTATAAC+CGG + chr8_3:46791931-46791950 None:intergenic 35.0%
!! TTACTTTTGAACCAAGGTTG+CGG + chr8_3:46791967-46791986 None:intergenic 35.0%
TAGCAAGACCCATAATAGAA+AGG + chr8_3:46792067-46792086 None:intergenic 35.0%
ATCCTTAATAAGTGCCCTAA+AGG + chr8_3:46792097-46792116 None:intergenic 35.0%
CCTAAGCTAGAACTATAGAA+GGG + chr8_3:46792261-46792280 None:intergenic 35.0%
!! CCTTCTATAGTTCTAGCTTA+GGG - chr8_3:46792259-46792278 Msa1291450:intron 35.0%
!! ACGACTCGGTCTTAATATTA+TGG - chr8_3:46792292-46792311 Msa1291450:intron 35.0%
CTCATGGTTTACTGATAAGT+GGG + chr8_3:46792362-46792381 None:intergenic 35.0%
ACTCATGGTTTACTGATAAG+TGG + chr8_3:46792363-46792382 None:intergenic 35.0%
AAACCATACTGAACTTGCAA+AGG - chr8_3:46792417-46792436 Msa1291450:intron 35.0%
ATTCCTTTGCAAGTTCAGTA+TGG + chr8_3:46792423-46792442 None:intergenic 35.0%
ATGTGTATTACCACTCTCTT+CGG - chr8_3:46792635-46792654 Msa1291450:CDS 35.0%
GATTGCACAGATATATATGC+TGG - chr8_3:46792970-46792989 Msa1291450:intron 35.0%
AGCAAAAATGACACACATGT+TGG - chr8_3:46793058-46793077 Msa1291450:intron 35.0%
AAACTGTACTCAACCATACA+AGG + chr8_3:46793196-46793215 None:intergenic 35.0%
GGCTATATTTGTGTATGACT+AGG - chr8_3:46793234-46793253 Msa1291450:intron 35.0%
TTTCTTCAATTGGAAGGAAG+TGG - chr8_3:46793273-46793292 Msa1291450:five_prime_UTR 35.0%
TTGGAAGGAAGTGGAATATA+AGG - chr8_3:46793282-46793301 Msa1291450:five_prime_UTR 35.0%
GTCGGTAAAGTTAGTATATG+TGG - chr8_3:46793353-46793372 Msa1291450:five_prime_UTR 35.0%
! TTATCTTCCAAGACTGGTTA+AGG - chr8_3:46793411-46793430 Msa1291450:five_prime_UTR 35.0%
TGTTTGGAGAAAATGCCACT+GGG + chr8_3:46789306-46789325 None:intergenic 40.0%
GAAAAGAAAGGTCTTCCAGT+TGG - chr8_3:46789942-46789961 Msa1291450:CDS 40.0%
AAGTTGCACTATTCTTGACG+TGG - chr8_3:46789977-46789996 Msa1291450:CDS 40.0%
TTTCGACACAACAGATTCCA+TGG + chr8_3:46790036-46790055 None:intergenic 40.0%
GGAATCTGTTGTGTCGAAAA+CGG - chr8_3:46790037-46790056 Msa1291450:CDS 40.0%
CAATGTCTAGCAGCAATTTC+AGG + chr8_3:46790685-46790704 None:intergenic 40.0%
ACTACAGGACTGAAGTATAG+CGG + chr8_3:46790918-46790937 None:intergenic 40.0%
AGCGAAATGTTGTCAAACAG+TGG + chr8_3:46790951-46790970 None:intergenic 40.0%
TTATGCTTCAGCTTCACTTG+GGG - chr8_3:46791195-46791214 Msa1291450:intron 40.0%
TTCCGCTGTTCTGATGAATT+AGG - chr8_3:46791275-46791294 Msa1291450:intron 40.0%
GCTGTTCTGATGAATTAGGA+TGG - chr8_3:46791279-46791298 Msa1291450:intron 40.0%
GCATGATCATAACTCACTTG+TGG + chr8_3:46791308-46791327 None:intergenic 40.0%
AGGAATTTCTCGAACAAGAG+AGG - chr8_3:46791476-46791495 Msa1291450:CDS 40.0%
!! GCCTTTATTTCTGACTAACG+TGG + chr8_3:46791632-46791651 None:intergenic 40.0%
!!! TGGTTTTGTGAGGTTGAGAT+TGG - chr8_3:46791695-46791714 Msa1291450:intron 40.0%
!!! TGGTTTTGTGAGGTTGAGAT+TGG - chr8_3:46791695-46791714 Msa1291450:intron 40.0%
TACCCGGTTATAGACTTGTA+TGG - chr8_3:46791925-46791944 Msa1291450:intron 40.0%
CGGTTATAGACTTGTATGGT+TGG - chr8_3:46791929-46791948 Msa1291450:intron 40.0%
!! CCCATAATAGAAAGGTACTG+CGG + chr8_3:46792059-46792078 None:intergenic 40.0%
CCGCAGTACCTTTCTATTAT+GGG - chr8_3:46792056-46792075 Msa1291450:intron 40.0%
TCTTGCTAACAAGTGCCTTT+AGG - chr8_3:46792079-46792098 Msa1291450:intron 40.0%
CTTGCTAACAAGTGCCTTTA+GGG - chr8_3:46792080-46792099 Msa1291450:intron 40.0%
!! TGCCTTTAGGGCACTTATTA+AGG - chr8_3:46792092-46792111 Msa1291450:intron 40.0%
AATGCTAACAAGTGCCCTAA+GGG + chr8_3:46792237-46792256 None:intergenic 40.0%
AAATGCTAACAAGTGCCCTA+AGG + chr8_3:46792238-46792257 None:intergenic 40.0%
!! CCCTTCTATAGTTCTAGCTT+AGG - chr8_3:46792258-46792277 Msa1291450:intron 40.0%
CCCTAAGCTAGAACTATAGA+AGG + chr8_3:46792262-46792281 None:intergenic 40.0%
!! CTATAGTTCTAGCTTAGGGT+TGG - chr8_3:46792263-46792282 Msa1291450:intron 40.0%
! GAGATTTACAGCCTCTCTTT+TGG - chr8_3:46792735-46792754 Msa1291450:CDS 40.0%
! ATTTACAGCCTCTCTTTTGG+AGG - chr8_3:46792738-46792757 Msa1291450:CDS 40.0%
TACATACACAACCAGATGAC+AGG + chr8_3:46792823-46792842 None:intergenic 40.0%
TGACACACATGTTGGCAAAA+AGG - chr8_3:46793066-46793085 Msa1291450:intron 40.0%
AGCAAAAATGTCACACATGC+TGG - chr8_3:46793108-46793127 Msa1291450:intron 40.0%
ACTGTTGAGTCAACCTTGTA+TGG - chr8_3:46793180-46793199 Msa1291450:intron 40.0%
CTTAAGACCTTAACCAGTCT+TGG + chr8_3:46793421-46793440 None:intergenic 40.0%
TCTCGTGTGATTAGTGACAG+CGG + chr8_3:46789248-46789267 None:intergenic 45.0%
CTGTTTGGAGAAAATGCCAC+TGG + chr8_3:46789307-46789326 None:intergenic 45.0%
AGTGCCAATAAACCCTACAG+AGG - chr8_3:46789890-46789909 Msa1291450:three_prime_UTR 45.0%
!! CTTCCAGTTGGTGTTACTCT+TGG - chr8_3:46789954-46789973 Msa1291450:CDS 45.0%
CTTCCAAGAGTAACACCAAC+TGG + chr8_3:46789960-46789979 None:intergenic 45.0%
! TCCTCAGCTTTATCAGACCA+TGG - chr8_3:46790016-46790035 Msa1291450:CDS 45.0%
TCCATGGTCTGATAAAGCTG+AGG + chr8_3:46790020-46790039 None:intergenic 45.0%
!! GTGGTATTGGCTTGGGATAT+GGG + chr8_3:46790367-46790386 None:intergenic 45.0%
!! AGTGGTATTGGCTTGGGATA+TGG + chr8_3:46790368-46790387 None:intergenic 45.0%
TATCCCAAGCCAATACCACT+AGG - chr8_3:46790368-46790387 Msa1291450:intron 45.0%
GAAACCAGTGCTGTCAATTG+CGG - chr8_3:46790860-46790879 Msa1291450:intron 45.0%
!! AGTGGCTATAGAAGCACTAC+AGG + chr8_3:46790933-46790952 None:intergenic 45.0%
GCAGTTATGGCAGCGTTATA+GGG + chr8_3:46791012-46791031 None:intergenic 45.0%
AGCAGTTATGGCAGCGTTAT+AGG + chr8_3:46791013-46791032 None:intergenic 45.0%
TATGCTTCAGCTTCACTTGG+GGG - chr8_3:46791196-46791215 Msa1291450:intron 45.0%
GCAAGTACCAATAGTCCTTG+AGG - chr8_3:46791449-46791468 Msa1291450:CDS 45.0%
GTACCAATAGTCCTTGAGGA+TGG - chr8_3:46791453-46791472 Msa1291450:CDS 45.0%
GAGAAATTCCTCCATCCTCA+AGG + chr8_3:46791467-46791486 None:intergenic 45.0%
TCGCGTGATCTGTAACATGT+TGG - chr8_3:46791527-46791546 Msa1291450:intron 45.0%
! GTTTGTTAGAACCGCAACCT+TGG - chr8_3:46791953-46791972 Msa1291450:intron 45.0%
GTAGGAGACATAGGCACAAT+TGG + chr8_3:46792026-46792045 None:intergenic 45.0%
GCCGCAGTACCTTTCTATTA+TGG - chr8_3:46792055-46792074 Msa1291450:intron 45.0%
ATAAGTGGGTAGTTCGTTCG+AGG + chr8_3:46792348-46792367 None:intergenic 45.0%
TTGCTTAGTGTGCTTACGGT+TGG + chr8_3:46793093-46793112 None:intergenic 45.0%
TGGGCATTATCTTCCAAGAC+TGG - chr8_3:46793405-46793424 Msa1291450:five_prime_UTR 45.0%
!! AATATAAAAATAATACAAAA+GGG + chr8_3:46789381-46789400 None:intergenic 5.0%
!! AAATATAAAAATAATACAAA+AGG + chr8_3:46789382-46789401 None:intergenic 5.0%
CTCGTGTGATTAGTGACAGC+GGG + chr8_3:46789247-46789266 None:intergenic 50.0%
TCACACGAGAAACACGACAG+TGG - chr8_3:46789258-46789277 Msa1291450:three_prime_UTR 50.0%
GTCACACTTCGTGAATTCCC+AGG - chr8_3:46789438-46789457 Msa1291450:three_prime_UTR 50.0%
TGCACTATTCTTGACGTGGC+TGG - chr8_3:46789981-46790000 Msa1291450:CDS 50.0%
ATTCTTGACGTGGCTGGTGA+TGG - chr8_3:46789987-46790006 Msa1291450:CDS 50.0%
GAATCGAACCTGAGACCTCA+AGG - chr8_3:46790330-46790349 Msa1291450:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG + chr8_3:46790374-46790393 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG + chr8_3:46790375-46790394 None:intergenic 50.0%
!! TAGGGTTGGCCTAGTGGTAT+TGG + chr8_3:46790380-46790399 None:intergenic 50.0%
TGTCATAGGCCAACCCACTA+GGG + chr8_3:46790398-46790417 None:intergenic 50.0%
TTGTCATAGGCCAACCCACT+AGG + chr8_3:46790399-46790418 None:intergenic 50.0%
CAATCCGCAATTGACAGCAC+TGG + chr8_3:46790867-46790886 None:intergenic 50.0%
CTGCAAGGTTTGCCATTGAG+CGG - chr8_3:46791231-46791250 Msa1291450:CDS 50.0%
AAGGTTTGCCATTGAGCGGT+TGG - chr8_3:46791235-46791254 Msa1291450:CDS 50.0%
CCTCCATCCTCAAGGACTAT+TGG + chr8_3:46791459-46791478 None:intergenic 50.0%
CCAATAGTCCTTGAGGATGG+AGG - chr8_3:46791456-46791475 Msa1291450:CDS 50.0%
CTATGTCTCCTACTGCAGAG+CGG - chr8_3:46792033-46792052 Msa1291450:intron 50.0%
! AGGGTTGGCATAGTACGACT+CGG - chr8_3:46792278-46792297 Msa1291450:intron 50.0%
! TCAGGGGTAATGGTGCAAAC+TGG + chr8_3:46792319-46792338 None:intergenic 50.0%
TTCGTTCGAGGTACGGTTCA+GGG + chr8_3:46792336-46792355 None:intergenic 50.0%
TGGGTAGTTCGTTCGAGGTA+CGG + chr8_3:46792343-46792362 None:intergenic 50.0%
GTGATGATATCAGTCGACGC+AGG - chr8_3:46792595-46792614 Msa1291450:intron 50.0%
! TCTTCGGTTCGCAGAACAGA+AGG - chr8_3:46792651-46792670 Msa1291450:CDS 50.0%
! CTTCGGTTCGCAGAACAGAA+GGG - chr8_3:46792652-46792671 Msa1291450:CDS 50.0%
AGCAATGGCCTCCAAAAGAG+AGG + chr8_3:46792749-46792768 None:intergenic 50.0%
CACAACCAGATGACAGGACA+TGG + chr8_3:46792817-46792836 None:intergenic 50.0%
TCGAACCTGAGACCTCAAGG+AGG - chr8_3:46790333-46790352 Msa1291450:intron 55.0%
TACCACTAGGCCAACCCTAG+TGG - chr8_3:46790381-46790400 Msa1291450:intron 55.0%
ACCACTAGGCCAACCCTAGT+GGG - chr8_3:46790382-46790401 Msa1291450:intron 55.0%
ATAGGCCAACCCACTAGGGT+TGG + chr8_3:46790394-46790413 None:intergenic 55.0%
CTTCACTTGGGGGTGAACAG+TGG - chr8_3:46791206-46791225 Msa1291450:intron 55.0%
GTTTGCCATTGAGCGGTTGG+CGG - chr8_3:46791238-46791257 Msa1291450:CDS 55.0%
ATTCACCGCCAACCGCTCAA+TGG + chr8_3:46791246-46791265 None:intergenic 55.0%
CGCTCTGCAGTAGGAGACAT+AGG + chr8_3:46792035-46792054 None:intergenic 55.0%
GAGGTACGGTTCAGGGGTAA+TGG + chr8_3:46792329-46792348 None:intergenic 55.0%
TCGTTCGAGGTACGGTTCAG+GGG + chr8_3:46792335-46792354 None:intergenic 55.0%
GTTCGTTCGAGGTACGGTTC+AGG + chr8_3:46792337-46792356 None:intergenic 55.0%
GTTCTGCGAACCGAAGAGAG+TGG + chr8_3:46792648-46792667 None:intergenic 55.0%
GACTGCCATGTCCTGTCATC+TGG - chr8_3:46792809-46792828 Msa1291450:CDS 55.0%
GTGCTCCTCCTTGAGGTCTC+AGG + chr8_3:46790341-46790360 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTTG+AGG + chr8_3:46790348-46790367 None:intergenic 60.0%
!! ACCCACTAGGGTTGGCCTAG+TGG + chr8_3:46790386-46790405 None:intergenic 60.0%
! CTAGGCCAACCCTAGTGGGT+TGG - chr8_3:46790386-46790405 Msa1291450:intron 60.0%
GGGTGAACAGTGGAGCTGCA+AGG - chr8_3:46791216-46791235 Msa1291450:intron 60.0%
TACTGCGGCCGCTCTGCAGT+AGG + chr8_3:46792044-46792063 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 46789244 46793471 46789244 ID=Msa1291450;Name=Msa1291450
chr8_3 mRNA 46789244 46793471 46789244 ID=Msa1291450-mRNA-1;Parent=Msa1291450;Name=Msa1291450-mRNA-1;_AED=0.11;_eAED=0.11;_QI=280|1|1|1|0.75|0.6|5|691|218
chr8_3 exon 46789244 46790177 46789244 ID=Msa1291450-mRNA-1:exon:13017;Parent=Msa1291450-mRNA-1
chr8_3 exon 46791218 46791265 46791218 ID=Msa1291450-mRNA-1:exon:13016;Parent=Msa1291450-mRNA-1
chr8_3 exon 46791405 46791509 46791405 ID=Msa1291450-mRNA-1:exon:13015;Parent=Msa1291450-mRNA-1
chr8_3 exon 46792627 46792951 46792627 ID=Msa1291450-mRNA-1:exon:13014;Parent=Msa1291450-mRNA-1
chr8_3 exon 46793256 46793471 46793256 ID=Msa1291450-mRNA-1:exon:13013;Parent=Msa1291450-mRNA-1
chr8_3 five_prime_UTR 46793256 46793471 46793256 ID=Msa1291450-mRNA-1:five_prime_utr;Parent=Msa1291450-mRNA-1
chr8_3 five_prime_UTR 46792888 46792951 46792888 ID=Msa1291450-mRNA-1:five_prime_utr;Parent=Msa1291450-mRNA-1
chr8_3 CDS 46792627 46792887 46792627 ID=Msa1291450-mRNA-1:cds;Parent=Msa1291450-mRNA-1
chr8_3 CDS 46791405 46791509 46791405 ID=Msa1291450-mRNA-1:cds;Parent=Msa1291450-mRNA-1
chr8_3 CDS 46791218 46791265 46791218 ID=Msa1291450-mRNA-1:cds;Parent=Msa1291450-mRNA-1
chr8_3 CDS 46789935 46790177 46789935 ID=Msa1291450-mRNA-1:cds;Parent=Msa1291450-mRNA-1
chr8_3 three_prime_UTR 46789244 46789934 46789244 ID=Msa1291450-mRNA-1:three_prime_utr;Parent=Msa1291450-mRNA-1
Gene Sequence

>Msa1291450

ATGGGATCTGAAGGGCCAAAGAAAATTACAATTCATGTAACTGGGTTTAAGAAGTTTCAAGGAGTGCCAATAAACCCTACAGAGGTTATTGTTAATAATCTTAGGGATTATGTTGAAAAGAAAGGTCTTCCAGTTGGTGTTACTCTTGGAAGTTGCACTATTCTTGACGTGGCTGGTGATGGTGCACTTCCTCAGCTTTATCAGACCATGGAATCTGTTGTGTCGAAAACGGATACTGAGAGTAATGCAAATGTTGTTTGGCTTCACTTGGGGGTGAACAGTGGAGCTGCAAGGTTTGCCATTGAGCGGTTGGCGGTGAATGAAGCTACTTTCCGCTGTTCTGATGAATTAGGATGGCAACCACAACAAGTACCAATAGTCCTTGAGGATGGAGGAATTTCTCGAACAAGAGAGACTTCTCTACCCGTTGATGCAATATTGAAATCCTTGAAAAAGGGAAAAGATTATGATGTGATGATATCAGTCGACGCAGGACGATTTGTTTGCAATTATGTGTATTACCACTCTCTTCGGTTCGCAGAACAGAAGGGTAACAAGTCTCTATTTGTTCATGTTCCCTTATTTTCGAAAATCGATGAAGAAACTCAGATGAGATTTACAGCCTCTCTTTTGGAGGCCATTGCTTCTGCATGTTAA

Protein sequence

>Msa1291450

MGSEGPKKITIHVTGFKKFQGVPINPTEVIVNNLRDYVEKKGLPVGVTLGSCTILDVAGDGALPQLYQTMESVVSKTDTESNANVVWLHLGVNSGAARFAIERLAVNEATFRCSDELGWQPQQVPIVLEDGGISRTRETSLPVDAILKSLKKGKDYDVMISVDAGRFVCNYVYYHSLRFAEQKGNKSLFVHVPLFSKIDEETQMRFTASLLEAIASAC*