Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423760 | XP_003611722.1 | 44.697 | 132 | 63 | 5 | 51 | 176 | 49 | 176 | 2.85e-19 | 90.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423760 | G7K6M3 | 44.697 | 132 | 63 | 5 | 51 | 176 | 49 | 176 | 1.36e-19 | 90.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044000 | Msa0423760 | 0.848916 | 4.516320e-60 | -8.615850e-47 |
| Msa0127800 | Msa0423760 | 0.822079 | 2.869565e-53 | -8.615850e-47 |
| Msa0423760 | Msa0512750 | 0.810106 | 1.359061e-50 | -8.615850e-47 |
| Msa0423760 | Msa0610430 | 0.810455 | 1.143141e-50 | -8.615850e-47 |
| Msa0423760 | Msa0610840 | -0.813477 | 2.509796e-51 | -8.615850e-47 |
| Msa0423760 | Msa0663810 | 0.832034 | 1.190174e-55 | -8.615850e-47 |
| Msa0423760 | Msa0735660 | 0.800204 | 1.608655e-48 | -8.615850e-47 |
| Msa0423760 | Msa0820850 | 0.804368 | 2.233635e-49 | -8.615850e-47 |
| Msa0423760 | Msa0849030 | 0.827550 | 1.470504e-54 | -8.615850e-47 |
| Msa0423760 | Msa0861130 | 0.811395 | 7.154747e-51 | -8.615850e-47 |
| Msa0423760 | Msa1048160 | 0.800238 | 1.583115e-48 | -8.615850e-47 |
| Msa0423760 | Msa1068870 | 0.802033 | 6.796976e-49 | -8.615850e-47 |
| Msa0423760 | Msa1081930 | 0.801181 | 1.016196e-48 | -8.615850e-47 |
| Msa0423760 | Msa1100050 | 0.814462 | 1.521869e-51 | -8.615850e-47 |
| Msa0423760 | Msa1135470 | 0.816075 | 6.667290e-52 | -8.615850e-47 |
| Msa0423760 | Msa1353470 | 0.803197 | 3.911349e-49 | -8.615850e-47 |
| Msa0423760 | Msa1454570 | 0.805814 | 1.113066e-49 | -8.615850e-47 |
| Msa0261550 | Msa0423760 | 0.804933 | 1.702547e-49 | -8.615850e-47 |
| Msa0265430 | Msa0423760 | 0.810522 | 1.105534e-50 | -8.615850e-47 |
| Msa0340380 | Msa0423760 | 0.802271 | 6.073066e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423760 | MtrunA17_Chr5g0402101 | 44.697 | 132 | 63 | 5 | 51 | 176 | 88 | 215 | 6.38e-23 | 90.9 |
| Msa0423760 | MtrunA17_Chr8g0393061 | 44.860 | 107 | 58 | 1 | 70 | 176 | 187 | 292 | 1.57e-21 | 88.6 |
| Msa0423760 | MtrunA17_Chr8g0349601 | 40.000 | 120 | 71 | 1 | 57 | 176 | 162 | 280 | 3.90e-19 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0423760 | AT3G11400.1 | 42.593 | 108 | 60 | 2 | 70 | 176 | 188 | 294 | 2.36e-18 | 80.5 |
| Msa0423760 | AT3G11400.2 | 42.593 | 108 | 60 | 2 | 70 | 176 | 215 | 321 | 4.13e-18 | 80.1 |
| Msa0423760 | AT5G06000.1 | 50.000 | 90 | 43 | 2 | 88 | 177 | 201 | 288 | 7.92e-18 | 79.3 |
Find 54 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATTGATTGGGTTATTT+TGG | 0.132539 | 3_2:+73729177 | None:intergenic |
| GCTGAACTCTGCAATCCTTT+TGG | 0.278938 | 3_2:-73728635 | Msa0423760:CDS |
| AATGGGCACTTTGGCTTTGT+TGG | 0.296129 | 3_2:-73728566 | Msa0423760:CDS |
| GAATAACACCATTTGGGTTT+GGG | 0.312217 | 3_2:+73729088 | None:intergenic |
| GTTGCTATTGATCATGAGTT+TGG | 0.354203 | 3_2:-73728593 | Msa0423760:CDS |
| CCAGTCGGAATAACACCATT+TGG | 0.363293 | 3_2:+73729081 | None:intergenic |
| GGAATAACACCATTTGGGTT+TGG | 0.365366 | 3_2:+73729087 | None:intergenic |
| CGTCAAGACTAACTCTGATT+TGG | 0.368388 | 3_2:-73728657 | Msa0423760:CDS |
| TCTTCGATCGGAGGATTGAT+TGG | 0.383375 | 3_2:+73729167 | None:intergenic |
| TGACAACACTAATTCTGTTC+TGG | 0.388742 | 3_2:-73728699 | Msa0423760:CDS |
| CCATCTGGACGATGATCTAA+TGG | 0.391387 | 3_2:-73728843 | Msa0423760:CDS |
| CTTAAACCTCCAGTCAAGAT+TGG | 0.395452 | 3_2:-73728791 | Msa0423760:CDS |
| CAGTCGGAATAACACCATTT+GGG | 0.404699 | 3_2:+73729082 | None:intergenic |
| ATCATGAGTTTGGCTGTAAT+GGG | 0.432837 | 3_2:-73728583 | Msa0423760:CDS |
| AGAATTAGTGTTGTCATGAT+AGG | 0.440596 | 3_2:+73728706 | None:intergenic |
| CTTCGATCGGAGGATTGATT+GGG | 0.443132 | 3_2:+73729168 | None:intergenic |
| GGCGATGATGACGTCTCCTC+TGG | 0.453304 | 3_2:-73729112 | Msa0423760:CDS |
| ATGTCAATCGAGAAGGTTAA+GGG | 0.456912 | 3_2:-73729133 | Msa0423760:CDS |
| GAGTTAGTCTTGACGTAGTA+CGG | 0.459024 | 3_2:+73728665 | None:intergenic |
| TTGACTGGAGGTTTAAGATC+GGG | 0.459633 | 3_2:+73728797 | None:intergenic |
| GATCATGAGTTTGGCTGTAA+TGG | 0.459824 | 3_2:-73728584 | Msa0423760:CDS |
| ATCTACAGGTGTCAACCATC+TGG | 0.460313 | 3_2:-73728858 | Msa0423760:intron |
| TGCAGCCATTGGAGTTCAAT+GGG | 0.467586 | 3_2:-73728480 | Msa0423760:CDS |
| GATGTCAATCGAGAAGGTTA+AGG | 0.469431 | 3_2:-73729134 | Msa0423760:CDS |
| ATGCAGCCATTGGAGTTCAA+TGG | 0.475522 | 3_2:-73728481 | Msa0423760:CDS |
| TTCTGCATCAATGCAGCCAT+TGG | 0.477150 | 3_2:-73728491 | Msa0423760:CDS |
| TTAAACCTCCAGTCAAGATT+GGG | 0.478705 | 3_2:-73728790 | Msa0423760:CDS |
| AATGCTATTAACAATCTCAA+TGG | 0.491734 | 3_2:-73728518 | Msa0423760:CDS |
| TGAAAACTCCCAATCTTGAC+TGG | 0.507608 | 3_2:+73728782 | None:intergenic |
| CCTCTGGACCCAAACCCAAA+TGG | 0.509889 | 3_2:-73729096 | Msa0423760:CDS |
| ATGCTATTAACAATCTCAAT+GGG | 0.515985 | 3_2:-73728517 | Msa0423760:CDS |
| TATTCCGACTGGTGGTTGCT+TGG | 0.517803 | 3_2:-73729070 | Msa0423760:CDS |
| AGCATTCTGAGCGCCGTCCC+TGG | 0.519732 | 3_2:+73728535 | None:intergenic |
| CTTGACTGGAGGTTTAAGAT+CGG | 0.522819 | 3_2:+73728796 | None:intergenic |
| TTTGGCTGTAATGGGCACTT+TGG | 0.523105 | 3_2:-73728575 | Msa0423760:CDS |
| CCATTTGGGTTTGGGTCCAG+AGG | 0.536787 | 3_2:+73729096 | None:intergenic |
| ATCAATAGCAACATCAGCAC+TGG | 0.551955 | 3_2:+73728604 | None:intergenic |
| CCAAATGGTGTTATTCCGAC+TGG | 0.556130 | 3_2:-73729081 | Msa0423760:CDS |
| CCATTAGATCATCGTCCAGA+TGG | 0.560442 | 3_2:+73728843 | None:intergenic |
| AGTTAGTCTTGACGTAGTAC+GGG | 0.569054 | 3_2:+73728666 | None:intergenic |
| GGTTTAAGATCGGGTTCACA+AGG | 0.579164 | 3_2:+73728806 | None:intergenic |
| CTTGACGTAGTACGGGAGGT+TGG | 0.581448 | 3_2:+73728673 | None:intergenic |
| GCACTGGTGACATCTCCAAA+AGG | 0.591331 | 3_2:+73728620 | None:intergenic |
| GAGAAGATGACTTATGCGAC+TGG | 0.600564 | 3_2:-73728731 | Msa0423760:CDS |
| AAAAGCGATGTCAATCGAGA+AGG | 0.605781 | 3_2:-73729140 | Msa0423760:exon |
| ACAAAAGCTTCCAGATAGTG+AGG | 0.624258 | 3_2:+73728755 | None:intergenic |
| ATTCTGAGCGCCGTCCCTGG+TGG | 0.630057 | 3_2:+73728538 | None:intergenic |
| AAACTCCCAATCTTGACTGG+AGG | 0.640258 | 3_2:+73728785 | None:intergenic |
| AATGGTGTTATTCCGACTGG+TGG | 0.641780 | 3_2:-73729078 | Msa0423760:CDS |
| GGTGACCCATTGAACTCCAA+TGG | 0.644165 | 3_2:+73728475 | None:intergenic |
| AGAAGATGACTTATGCGACT+GGG | 0.651580 | 3_2:-73728730 | Msa0423760:CDS |
| TAGTCTTGACGTAGTACGGG+AGG | 0.662487 | 3_2:+73728669 | None:intergenic |
| GCTTCCAAGCAACCACCAGT+CGG | 0.666520 | 3_2:+73729066 | None:intergenic |
| GACAGCGACTCAGACGACGA+AGG | 0.728123 | 3_2:-73729037 | Msa0423760:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAAAACTGAAGATAAC+AGG | + | chr3_2:73728667-73728686 | None:intergenic | 20.0% |
| !! | AGTGATATTGAAATTAGATT+AGG | + | chr3_2:73728698-73728717 | None:intergenic | 20.0% |
| !!! | AATTTAAAACTGAAGATAAC+AGG | + | chr3_2:73728667-73728686 | None:intergenic | 20.0% |
| !! | AGTGATATTGAAATTAGATT+AGG | + | chr3_2:73728698-73728717 | None:intergenic | 20.0% |
| ! | TAACGAAGTTAATTGAATAC+CGG | - | chr3_2:73728729-73728748 | Msa0423760:CDS | 25.0% |
| ! | TTATATCTGTTTGTATCTAC+AGG | - | chr3_2:73728781-73728800 | Msa0423760:CDS | 25.0% |
| ! | AATGCTATTAACAATCTCAA+TGG | - | chr3_2:73729135-73729154 | Msa0423760:CDS | 25.0% |
| ! | ATGCTATTAACAATCTCAAT+GGG | - | chr3_2:73729136-73729155 | Msa0423760:CDS | 25.0% |
| ! | TAACGAAGTTAATTGAATAC+CGG | - | chr3_2:73728729-73728748 | Msa0423760:CDS | 25.0% |
| ! | TTATATCTGTTTGTATCTAC+AGG | - | chr3_2:73728781-73728800 | Msa0423760:CDS | 25.0% |
| ! | AATGCTATTAACAATCTCAA+TGG | - | chr3_2:73729135-73729154 | Msa0423760:CDS | 25.0% |
| ! | ATGCTATTAACAATCTCAAT+GGG | - | chr3_2:73729136-73729155 | Msa0423760:CDS | 25.0% |
| TGAAGATAACAGGAAAAAAC+GGG | + | chr3_2:73728657-73728676 | None:intergenic | 30.0% | |
| CTGAAGATAACAGGAAAAAA+CGG | + | chr3_2:73728658-73728677 | None:intergenic | 30.0% | |
| TGATAGACATCAAATTCATC+CGG | + | chr3_2:73728751-73728770 | None:intergenic | 30.0% | |
| AGAATTAGTGTTGTCATGAT+AGG | + | chr3_2:73728950-73728969 | None:intergenic | 30.0% | |
| TGAAGATAACAGGAAAAAAC+GGG | + | chr3_2:73728657-73728676 | None:intergenic | 30.0% | |
| CTGAAGATAACAGGAAAAAA+CGG | + | chr3_2:73728658-73728677 | None:intergenic | 30.0% | |
| TGATAGACATCAAATTCATC+CGG | + | chr3_2:73728751-73728770 | None:intergenic | 30.0% | |
| AGAATTAGTGTTGTCATGAT+AGG | + | chr3_2:73728950-73728969 | None:intergenic | 30.0% | |
| ! | GAGGATTGATTGGGTTATTT+TGG | + | chr3_2:73728479-73728498 | None:intergenic | 35.0% |
| !! | TCGCTTTTGTTATCTTCGAT+CGG | + | chr3_2:73728501-73728520 | None:intergenic | 35.0% |
| ATGTCAATCGAGAAGGTTAA+GGG | - | chr3_2:73728520-73728539 | Msa0423760:CDS | 35.0% | |
| ! | GAATAACACCATTTGGGTTT+GGG | + | chr3_2:73728568-73728587 | None:intergenic | 35.0% |
| TTAAACCTCCAGTCAAGATT+GGG | - | chr3_2:73728863-73728882 | Msa0423760:intron | 35.0% | |
| TGACAACACTAATTCTGTTC+TGG | - | chr3_2:73728954-73728973 | Msa0423760:intron | 35.0% | |
| ! | GTTGCTATTGATCATGAGTT+TGG | - | chr3_2:73729060-73729079 | Msa0423760:CDS | 35.0% |
| ATCATGAGTTTGGCTGTAAT+GGG | - | chr3_2:73729070-73729089 | Msa0423760:CDS | 35.0% | |
| ! | GAGGATTGATTGGGTTATTT+TGG | + | chr3_2:73728479-73728498 | None:intergenic | 35.0% |
| !! | TCGCTTTTGTTATCTTCGAT+CGG | + | chr3_2:73728501-73728520 | None:intergenic | 35.0% |
| ATGTCAATCGAGAAGGTTAA+GGG | - | chr3_2:73728520-73728539 | Msa0423760:CDS | 35.0% | |
| ! | GAATAACACCATTTGGGTTT+GGG | + | chr3_2:73728568-73728587 | None:intergenic | 35.0% |
| TTAAACCTCCAGTCAAGATT+GGG | - | chr3_2:73728863-73728882 | Msa0423760:intron | 35.0% | |
| TGACAACACTAATTCTGTTC+TGG | - | chr3_2:73728954-73728973 | Msa0423760:intron | 35.0% | |
| ! | GTTGCTATTGATCATGAGTT+TGG | - | chr3_2:73729060-73729079 | Msa0423760:CDS | 35.0% |
| ATCATGAGTTTGGCTGTAAT+GGG | - | chr3_2:73729070-73729089 | Msa0423760:CDS | 35.0% | |
| !! | CTTTTGTTATCTTCGATCGG+AGG | + | chr3_2:73728498-73728517 | None:intergenic | 40.0% |
| AAAAGCGATGTCAATCGAGA+AGG | - | chr3_2:73728513-73728532 | Msa0423760:CDS | 40.0% | |
| GATGTCAATCGAGAAGGTTA+AGG | - | chr3_2:73728519-73728538 | Msa0423760:CDS | 40.0% | |
| ! | GGAATAACACCATTTGGGTT+TGG | + | chr3_2:73728569-73728588 | None:intergenic | 40.0% |
| CAGTCGGAATAACACCATTT+GGG | + | chr3_2:73728574-73728593 | None:intergenic | 40.0% | |
| ! | TTGACTGGAGGTTTAAGATC+GGG | + | chr3_2:73728859-73728878 | None:intergenic | 40.0% |
| ! | CTTGACTGGAGGTTTAAGAT+CGG | + | chr3_2:73728860-73728879 | None:intergenic | 40.0% |
| CTTAAACCTCCAGTCAAGAT+TGG | - | chr3_2:73728862-73728881 | Msa0423760:intron | 40.0% | |
| TGAAAACTCCCAATCTTGAC+TGG | + | chr3_2:73728874-73728893 | None:intergenic | 40.0% | |
| ! | TTTTCACGTACCTCACTATC+TGG | - | chr3_2:73728888-73728907 | Msa0423760:intron | 40.0% |
| ACAAAAGCTTCCAGATAGTG+AGG | + | chr3_2:73728901-73728920 | None:intergenic | 40.0% | |
| AGAAGATGACTTATGCGACT+GGG | - | chr3_2:73728923-73728942 | Msa0423760:intron | 40.0% | |
| !! | AGTTAGTCTTGACGTAGTAC+GGG | + | chr3_2:73728990-73729009 | None:intergenic | 40.0% |
| !! | GAGTTAGTCTTGACGTAGTA+CGG | + | chr3_2:73728991-73729010 | None:intergenic | 40.0% |
| CGTCAAGACTAACTCTGATT+TGG | - | chr3_2:73728996-73729015 | Msa0423760:intron | 40.0% | |
| ATCAATAGCAACATCAGCAC+TGG | + | chr3_2:73729052-73729071 | None:intergenic | 40.0% | |
| GATCATGAGTTTGGCTGTAA+TGG | - | chr3_2:73729069-73729088 | Msa0423760:CDS | 40.0% | |
| !! | CTTTTGTTATCTTCGATCGG+AGG | + | chr3_2:73728498-73728517 | None:intergenic | 40.0% |
| AAAAGCGATGTCAATCGAGA+AGG | - | chr3_2:73728513-73728532 | Msa0423760:CDS | 40.0% | |
| GATGTCAATCGAGAAGGTTA+AGG | - | chr3_2:73728519-73728538 | Msa0423760:CDS | 40.0% | |
| ! | GGAATAACACCATTTGGGTT+TGG | + | chr3_2:73728569-73728588 | None:intergenic | 40.0% |
| CAGTCGGAATAACACCATTT+GGG | + | chr3_2:73728574-73728593 | None:intergenic | 40.0% | |
| ! | TTGACTGGAGGTTTAAGATC+GGG | + | chr3_2:73728859-73728878 | None:intergenic | 40.0% |
| ! | CTTGACTGGAGGTTTAAGAT+CGG | + | chr3_2:73728860-73728879 | None:intergenic | 40.0% |
| CTTAAACCTCCAGTCAAGAT+TGG | - | chr3_2:73728862-73728881 | Msa0423760:intron | 40.0% | |
| TGAAAACTCCCAATCTTGAC+TGG | + | chr3_2:73728874-73728893 | None:intergenic | 40.0% | |
| ! | TTTTCACGTACCTCACTATC+TGG | - | chr3_2:73728888-73728907 | Msa0423760:intron | 40.0% |
| ACAAAAGCTTCCAGATAGTG+AGG | + | chr3_2:73728901-73728920 | None:intergenic | 40.0% | |
| AGAAGATGACTTATGCGACT+GGG | - | chr3_2:73728923-73728942 | Msa0423760:intron | 40.0% | |
| !! | AGTTAGTCTTGACGTAGTAC+GGG | + | chr3_2:73728990-73729009 | None:intergenic | 40.0% |
| !! | GAGTTAGTCTTGACGTAGTA+CGG | + | chr3_2:73728991-73729010 | None:intergenic | 40.0% |
| CGTCAAGACTAACTCTGATT+TGG | - | chr3_2:73728996-73729015 | Msa0423760:intron | 40.0% | |
| ATCAATAGCAACATCAGCAC+TGG | + | chr3_2:73729052-73729071 | None:intergenic | 40.0% | |
| GATCATGAGTTTGGCTGTAA+TGG | - | chr3_2:73729069-73729088 | Msa0423760:CDS | 40.0% | |
| CTTCGATCGGAGGATTGATT+GGG | + | chr3_2:73728488-73728507 | None:intergenic | 45.0% | |
| TCTTCGATCGGAGGATTGAT+TGG | + | chr3_2:73728489-73728508 | None:intergenic | 45.0% | |
| CCAGTCGGAATAACACCATT+TGG | + | chr3_2:73728575-73728594 | None:intergenic | 45.0% | |
| !! | CCAAATGGTGTTATTCCGAC+TGG | - | chr3_2:73728572-73728591 | Msa0423760:CDS | 45.0% |
| !! | AATGGTGTTATTCCGACTGG+TGG | - | chr3_2:73728575-73728594 | Msa0423760:CDS | 45.0% |
| ATCTACAGGTGTCAACCATC+TGG | - | chr3_2:73728795-73728814 | Msa0423760:CDS | 45.0% | |
| CCATTAGATCATCGTCCAGA+TGG | + | chr3_2:73728813-73728832 | None:intergenic | 45.0% | |
| CCATCTGGACGATGATCTAA+TGG | - | chr3_2:73728810-73728829 | Msa0423760:CDS | 45.0% | |
| ! | GGTTTAAGATCGGGTTCACA+AGG | + | chr3_2:73728850-73728869 | None:intergenic | 45.0% |
| AAACTCCCAATCTTGACTGG+AGG | + | chr3_2:73728871-73728890 | None:intergenic | 45.0% | |
| GAGAAGATGACTTATGCGAC+TGG | - | chr3_2:73728922-73728941 | Msa0423760:intron | 45.0% | |
| ! | GCTGAACTCTGCAATCCTTT+TGG | - | chr3_2:73729018-73729037 | Msa0423760:intron | 45.0% |
| !! | TTTGGCTGTAATGGGCACTT+TGG | - | chr3_2:73729078-73729097 | Msa0423760:CDS | 45.0% |
| !! | AATGGGCACTTTGGCTTTGT+TGG | - | chr3_2:73729087-73729106 | Msa0423760:CDS | 45.0% |
| !!! | CTTTGTTGGCTTTTCCACCA+GGG | - | chr3_2:73729101-73729120 | Msa0423760:CDS | 45.0% |
| TTCTGCATCAATGCAGCCAT+TGG | - | chr3_2:73729162-73729181 | Msa0423760:five_prime_UTR | 45.0% | |
| ATGCAGCCATTGGAGTTCAA+TGG | - | chr3_2:73729172-73729191 | Msa0423760:five_prime_UTR | 45.0% | |
| TGCAGCCATTGGAGTTCAAT+GGG | - | chr3_2:73729173-73729192 | Msa0423760:five_prime_UTR | 45.0% | |
| CTTCGATCGGAGGATTGATT+GGG | + | chr3_2:73728488-73728507 | None:intergenic | 45.0% | |
| TCTTCGATCGGAGGATTGAT+TGG | + | chr3_2:73728489-73728508 | None:intergenic | 45.0% | |
| CCAGTCGGAATAACACCATT+TGG | + | chr3_2:73728575-73728594 | None:intergenic | 45.0% | |
| !! | CCAAATGGTGTTATTCCGAC+TGG | - | chr3_2:73728572-73728591 | Msa0423760:CDS | 45.0% |
| !! | AATGGTGTTATTCCGACTGG+TGG | - | chr3_2:73728575-73728594 | Msa0423760:CDS | 45.0% |
| ATCTACAGGTGTCAACCATC+TGG | - | chr3_2:73728795-73728814 | Msa0423760:CDS | 45.0% | |
| CCATTAGATCATCGTCCAGA+TGG | + | chr3_2:73728813-73728832 | None:intergenic | 45.0% | |
| CCATCTGGACGATGATCTAA+TGG | - | chr3_2:73728810-73728829 | Msa0423760:CDS | 45.0% | |
| ! | GGTTTAAGATCGGGTTCACA+AGG | + | chr3_2:73728850-73728869 | None:intergenic | 45.0% |
| AAACTCCCAATCTTGACTGG+AGG | + | chr3_2:73728871-73728890 | None:intergenic | 45.0% | |
| GAGAAGATGACTTATGCGAC+TGG | - | chr3_2:73728922-73728941 | Msa0423760:intron | 45.0% | |
| ! | GCTGAACTCTGCAATCCTTT+TGG | - | chr3_2:73729018-73729037 | Msa0423760:intron | 45.0% |
| !! | TTTGGCTGTAATGGGCACTT+TGG | - | chr3_2:73729078-73729097 | Msa0423760:CDS | 45.0% |
| !! | AATGGGCACTTTGGCTTTGT+TGG | - | chr3_2:73729087-73729106 | Msa0423760:CDS | 45.0% |
| !!! | CTTTGTTGGCTTTTCCACCA+GGG | - | chr3_2:73729101-73729120 | Msa0423760:CDS | 45.0% |
| TTCTGCATCAATGCAGCCAT+TGG | - | chr3_2:73729162-73729181 | Msa0423760:five_prime_UTR | 45.0% | |
| ATGCAGCCATTGGAGTTCAA+TGG | - | chr3_2:73729172-73729191 | Msa0423760:five_prime_UTR | 45.0% | |
| TGCAGCCATTGGAGTTCAAT+GGG | - | chr3_2:73729173-73729192 | Msa0423760:five_prime_UTR | 45.0% | |
| TATTCCGACTGGTGGTTGCT+TGG | - | chr3_2:73728583-73728602 | Msa0423760:CDS | 50.0% | |
| ! | TAGTCTTGACGTAGTACGGG+AGG | + | chr3_2:73728987-73729006 | None:intergenic | 50.0% |
| ! | GCACTGGTGACATCTCCAAA+AGG | + | chr3_2:73729036-73729055 | None:intergenic | 50.0% |
| !!! | GCTTTGTTGGCTTTTCCACC+AGG | - | chr3_2:73729100-73729119 | Msa0423760:CDS | 50.0% |
| GGTGACCCATTGAACTCCAA+TGG | + | chr3_2:73729181-73729200 | None:intergenic | 50.0% | |
| TATTCCGACTGGTGGTTGCT+TGG | - | chr3_2:73728583-73728602 | Msa0423760:CDS | 50.0% | |
| ! | TAGTCTTGACGTAGTACGGG+AGG | + | chr3_2:73728987-73729006 | None:intergenic | 50.0% |
| ! | GCACTGGTGACATCTCCAAA+AGG | + | chr3_2:73729036-73729055 | None:intergenic | 50.0% |
| !!! | GCTTTGTTGGCTTTTCCACC+AGG | - | chr3_2:73729100-73729119 | Msa0423760:CDS | 50.0% |
| GGTGACCCATTGAACTCCAA+TGG | + | chr3_2:73729181-73729200 | None:intergenic | 50.0% | |
| ! | CCATTTGGGTTTGGGTCCAG+AGG | + | chr3_2:73728560-73728579 | None:intergenic | 55.0% |
| CCTCTGGACCCAAACCCAAA+TGG | - | chr3_2:73728557-73728576 | Msa0423760:CDS | 55.0% | |
| GCTTCCAAGCAACCACCAGT+CGG | + | chr3_2:73728590-73728609 | None:intergenic | 55.0% | |
| CTTGACGTAGTACGGGAGGT+TGG | + | chr3_2:73728983-73729002 | None:intergenic | 55.0% | |
| !!! | GTTGGCTTTTCCACCAGGGA+CGG | - | chr3_2:73729105-73729124 | Msa0423760:CDS | 55.0% |
| ! | CCATTTGGGTTTGGGTCCAG+AGG | + | chr3_2:73728560-73728579 | None:intergenic | 55.0% |
| CCTCTGGACCCAAACCCAAA+TGG | - | chr3_2:73728557-73728576 | Msa0423760:CDS | 55.0% | |
| GCTTCCAAGCAACCACCAGT+CGG | + | chr3_2:73728590-73728609 | None:intergenic | 55.0% | |
| CTTGACGTAGTACGGGAGGT+TGG | + | chr3_2:73728983-73729002 | None:intergenic | 55.0% | |
| !!! | GTTGGCTTTTCCACCAGGGA+CGG | - | chr3_2:73729105-73729124 | Msa0423760:CDS | 55.0% |
| ! | GGCGATGATGACGTCTCCTC+TGG | - | chr3_2:73728541-73728560 | Msa0423760:CDS | 60.0% |
| GACAGCGACTCAGACGACGA+AGG | - | chr3_2:73728616-73728635 | Msa0423760:CDS | 60.0% | |
| AGCGACTCAGACGACGAAGG+TGG | - | chr3_2:73728619-73728638 | Msa0423760:CDS | 60.0% | |
| GCGACTCAGACGACGAAGGT+GGG | - | chr3_2:73728620-73728639 | Msa0423760:CDS | 60.0% | |
| CGACTCAGACGACGAAGGTG+GGG | - | chr3_2:73728621-73728640 | Msa0423760:CDS | 60.0% | |
| ! | GGCGATGATGACGTCTCCTC+TGG | - | chr3_2:73728541-73728560 | Msa0423760:CDS | 60.0% |
| GACAGCGACTCAGACGACGA+AGG | - | chr3_2:73728616-73728635 | Msa0423760:CDS | 60.0% | |
| AGCGACTCAGACGACGAAGG+TGG | - | chr3_2:73728619-73728638 | Msa0423760:CDS | 60.0% | |
| GCGACTCAGACGACGAAGGT+GGG | - | chr3_2:73728620-73728639 | Msa0423760:CDS | 60.0% | |
| CGACTCAGACGACGAAGGTG+GGG | - | chr3_2:73728621-73728640 | Msa0423760:CDS | 60.0% | |
| ! | ATTCTGAGCGCCGTCCCTGG+TGG | + | chr3_2:73729118-73729137 | None:intergenic | 65.0% |
| ! | AGCATTCTGAGCGCCGTCCC+TGG | + | chr3_2:73729121-73729140 | None:intergenic | 65.0% |
| ! | ATTCTGAGCGCCGTCCCTGG+TGG | + | chr3_2:73729118-73729137 | None:intergenic | 65.0% |
| ! | AGCATTCTGAGCGCCGTCCC+TGG | + | chr3_2:73729121-73729140 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 73728457 | 73729218 | 73728457 | ID=Msa0423760;Name=Msa0423760 |
| chr3_2 | mRNA | 73728457 | 73729218 | 73728457 | ID=Msa0423760-mRNA-1;Parent=Msa0423760;Name=Msa0423760-mRNA-1;_AED=0.01;_eAED=0.01;_QI=63|1|0.5|1|1|1|2|0|177 |
| chr3_2 | exon | 73728457 | 73728872 | 73728457 | ID=Msa0423760-mRNA-1:exon:18501;Parent=Msa0423760-mRNA-1 |
| chr3_2 | exon | 73729038 | 73729218 | 73729038 | ID=Msa0423760-mRNA-1:exon:18500;Parent=Msa0423760-mRNA-1 |
| chr3_2 | five_prime_UTR | 73729156 | 73729218 | 73729156 | ID=Msa0423760-mRNA-1:five_prime_utr;Parent=Msa0423760-mRNA-1 |
| chr3_2 | CDS | 73729038 | 73729155 | 73729038 | ID=Msa0423760-mRNA-1:cds;Parent=Msa0423760-mRNA-1 |
| chr3_2 | CDS | 73728457 | 73728872 | 73728457 | ID=Msa0423760-mRNA-1:cds;Parent=Msa0423760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
