AlfalfaGEDB | Msa0453830

M. sativa cultivar zhongmu-4 / Msa0453830

KEGG: -
GO: GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01151.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0453830	XP_003626313.1	95.620	274	11	1	1	273	1	274	5.70e-163	463

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0453830	sp\|Q9SYY4\|ELO3L_ARATH	28.472	288	176	8	9	273	9	289	6.29e-30	117

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0453830	Q2HTN1	95.620	274	11	1	1	273	1	274	2.72e-163	463

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa0453830	0.826606	2.474418e-54	-8.615850e-47
Msa0037300	Msa0453830	0.813960	1.964661e-51	-8.615850e-47
Msa0085190	Msa0453830	0.803243	3.826461e-49	-8.615850e-47
Msa0085230	Msa0453830	0.809074	2.264766e-50	-8.615850e-47
Msa0178020	Msa0453830	0.816805	4.576007e-52	-8.615850e-47
Msa0216390	Msa0453830	0.802047	6.751018e-49	-8.615850e-47
Msa0380390	Msa0453830	0.826383	2.796482e-54	-8.615850e-47
Msa0453830	Msa0502010	0.816672	4.900785e-52	-8.615850e-47
Msa0453830	Msa0766950	0.814986	1.164706e-51	-8.615850e-47
Msa0453830	Msa1206500	0.807806	4.223070e-50	-8.615850e-47
Msa0453830	Msa1208630	0.826987	2.005708e-54	-8.615850e-47
Msa0453830	Msa1297500	0.801758	7.742363e-49	-8.615850e-47
Msa0453830	Msa1298180	0.812226	4.715636e-51	-8.615850e-47
Msa0453830	Msa1375570	0.815385	9.498837e-52	-8.615850e-47
Msa0453830	Msa1376560	0.800795	1.218514e-48	-8.615850e-47
Msa0453830	Msa1409530	0.805364	1.383735e-49	-8.615850e-47
Msa0453830	Msa1411390	0.817383	3.392837e-52	-8.615850e-47
Msa0453830	Msa1439880	0.817295	3.551459e-52	-8.615850e-47
Msa0256590	Msa0453830	0.805862	1.087386e-49	-8.615850e-47
Msa0288350	Msa0453830	0.801014	1.099248e-48	-8.615850e-47
Msa0288360	Msa0453830	0.801504	8.729665e-49	-8.615850e-47
Msa0295730	Msa0453830	0.823734	1.180931e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0453830	MtrunA17_Chr7g0273031	95.620	274	11	1	1	273	1	274	5.24e-167	463
Msa0453830	MtrunA17_Chr8g0373641	33.929	280	168	3	9	273	16	293	1.73e-42	147
Msa0453830	MtrunA17_Chr3g0141331	33.216	283	164	5	9	273	15	290	4.69e-41	143
Msa0453830	MtrunA17_Chr5g0403531	33.333	288	157	7	7	272	9	283	4.97e-38	135
Msa0453830	MtrunA17_Chr1g0154571	27.305	282	143	7	9	270	9	248	2.31e-18	82.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0453830	AT3G06470.1	57.664	274	103	5	9	272	8	278	1.70e-100	295
Msa0453830	AT3G06460.1	52.107	261	116	5	9	262	8	266	3.54e-85	257
Msa0453830	AT1G75000.1	30.717	293	153	6	10	269	5	280	8.79e-37	132
Msa0453830	AT4G36830.1	28.472	288	176	8	9	273	9	289	6.39e-31	117
Msa0453830	AT4G36830.2	29.572	257	153	7	9	244	9	258	1.26e-25	103

Find 99 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAATGGTCCTTTCTTCTTT+TGG	0.091856	3_3:-44685973	Msa0453830:CDS
TCCGGTGGTGGTGGATGCTC+TGG	0.244745	3_3:-44685620	Msa0453830:CDS
CTCCATCCTCTCCCTCATTA+TGG	0.310997	3_3:-44686074	Msa0453830:CDS
GAGAGTGAGGGAGAGATAAA+AGG	0.334543	3_3:+44686171	None:intergenic
CTCTCCCTCATTATGGCTAT+TGG	0.337974	3_3:-44686067	Msa0453830:CDS
GGATAGGTGGGAGAGGGAAG+AGG	0.353829	3_3:+44686143	None:intergenic
TCCCAATCATGTGTTATCTA+TGG	0.356723	3_3:-44685838	Msa0453830:CDS
GGAGGTTAGGCGTGTGGGTT+AGG	0.364467	3_3:+44686029	None:intergenic
GGATGGAGAGGATGAGGTTG+TGG	0.388690	3_3:+44686089	None:intergenic
GTGGGAGAGGGAAGAGGAGA+AGG	0.389465	3_3:+44686149	None:intergenic
CTTTATTATCACTTCGGATC+CGG	0.398177	3_3:-44685638	Msa0453830:CDS
CAAAAGAAGAAAGGACCATT+TGG	0.406806	3_3:+44685974	None:intergenic
TGGTGGATGCTCTGGGATGA+AGG	0.407237	3_3:-44685612	Msa0453830:CDS
GAGTTGGTAAGAAGTGCAAT+AGG	0.410491	3_3:+44685791	None:intergenic
GAGGAATGAGAGACGTTTGA+TGG	0.423143	3_3:+44685883	None:intergenic
GTTAGGCGTGTGGGTTAGGA+TGG	0.424043	3_3:+44686033	None:intergenic
GAGGTTGTGGAGTGCGGTGA+AGG	0.426675	3_3:+44686102	None:intergenic
GGAAGTGAGGTGGGATAGGT+GGG	0.431318	3_3:+44686131	None:intergenic
GATGCTCTGGGATGAAGGCT+TGG	0.437263	3_3:-44685607	Msa0453830:CDS
AGCCATAGATAACACATGAT+TGG	0.439169	3_3:+44685836	None:intergenic
AGGAAGTGAGGTGGGATAGG+TGG	0.440874	3_3:+44686130	None:intergenic
GTGTTCAGCTTCGCCGTCTC+CGG	0.442875	3_3:-44685668	Msa0453830:CDS
GGAAGAGGAGAAGGAGAGTG+AGG	0.444740	3_3:+44686158	None:intergenic
CACTTCGGATCCGGTGGTGG+TGG	0.447681	3_3:-44685629	Msa0453830:CDS
TTGGCAGAATCCTTCAACAT+TGG	0.449261	3_3:-44686282	Msa0453830:CDS
TTGAGGAAGTGAGGTGGGAT+AGG	0.449819	3_3:+44686127	None:intergenic
GGGAGAGGATGGAGAGGATG+AGG	0.450488	3_3:+44686083	None:intergenic
GGACCATTTGGAGGGGTATG+AGG	0.451616	3_3:+44685986	None:intergenic
GCCATAGATAACACATGATT+GGG	0.452793	3_3:+44685837	None:intergenic
TGGAAAGAGAGAGGAACAAA+AGG	0.452957	3_3:+44686197	None:intergenic
CAGATGGTGGAGCGGAGGTT+AGG	0.467929	3_3:+44686016	None:intergenic
CCGGTGGTGGTGGATGCTCT+GGG	0.474001	3_3:-44685619	Msa0453830:CDS
TGAACACGAACTGAACAATC+TGG	0.475700	3_3:+44685684	None:intergenic
TACTACTTCCTCACCACTGT+TGG	0.476064	3_3:-44685743	Msa0453830:CDS
CTCATGCTTTATTATCACTT+CGG	0.480515	3_3:-44685644	Msa0453830:CDS
TATCACTTCGGATCCGGTGG+TGG	0.497768	3_3:-44685632	Msa0453830:CDS
AGGAACAAAAGGGATGAGGC+TGG	0.499237	3_3:+44686208	None:intergenic
GGAGCGGAGGTTAGGCGTGT+GGG	0.499948	3_3:+44686024	None:intergenic
GAGGTGGGATAGGTGGGAGA+GGG	0.500599	3_3:+44686137	None:intergenic
AGTTGGTAAGAAGTGCAATA+GGG	0.500935	3_3:+44685792	None:intergenic
GATGAGGCTGGAGTGTGAGG+AGG	0.502414	3_3:+44686220	None:intergenic
TGAGGTGGGATAGGTGGGAG+AGG	0.507625	3_3:+44686136	None:intergenic
GAAGAGGAGAAGGAGAGTGA+GGG	0.511361	3_3:+44686159	None:intergenic
AGCTGAATGGAAAACCTCAT+TGG	0.512015	3_3:-44686301	None:intergenic
CCTCCTCATACCCCTCCAAA+TGG	0.515262	3_3:-44685989	Msa0453830:CDS
TGGAGCGGAGGTTAGGCGTG+TGG	0.516377	3_3:+44686023	None:intergenic
GAGGGAAGCAGATGGTGGAG+CGG	0.519215	3_3:+44686008	None:intergenic
CCCAGAGCATCCACCACCAC+CGG	0.521985	3_3:+44685619	None:intergenic
AGCCATAATGAGGGAGAGGA+TGG	0.527649	3_3:+44686072	None:intergenic
TCGGTAACGACGCGTTTCCA+CGG	0.536456	3_3:+44685710	None:intergenic
GCGTGTGGGTTAGGATGGTG+AGG	0.537723	3_3:+44686038	None:intergenic
GGTAAACTAGCCAATGTTGA+AGG	0.541678	3_3:+44686272	None:intergenic
AGGGTTTGAGGAAGTGAGGT+GGG	0.545949	3_3:+44686122	None:intergenic
ATGAGGCTGGAGTGTGAGGA+GGG	0.554548	3_3:+44686221	None:intergenic
GGAGTGCGGTGAAGGGTTTG+AGG	0.557377	3_3:+44686110	None:intergenic
GAGGGAGAGATAAAAGGCAA+TGG	0.559656	3_3:+44686177	None:intergenic
TTTCGAGAGGTAGAAGATGT+AGG	0.563009	3_3:+44685949	None:intergenic
GTGATAATAAAGCATGAGAC+CGG	0.563667	3_3:+44685649	None:intergenic
GTTGAAGGATTCTGCCAATG+AGG	0.566132	3_3:+44686287	None:intergenic
CAATAGCCATAATGAGGGAG+AGG	0.566959	3_3:+44686068	None:intergenic
AGGGATGAGGCTGGAGTGTG+AGG	0.567634	3_3:+44686217	None:intergenic
AGGTGCCAATAGCCATAATG+AGG	0.568133	3_3:+44686062	None:intergenic
ATGTAGGCCCAAAAGAAGAA+AGG	0.568774	3_3:+44685965	None:intergenic
GACGTTTGATGGATCTTGAG+AGG	0.571177	3_3:+44685894	None:intergenic
TGATTGGGACGGTGGAATGA+TGG	0.571858	3_3:+44685852	None:intergenic
GTGAAGGGTTTGAGGAAGTG+AGG	0.573391	3_3:+44686118	None:intergenic
AGGTTGTGGAGTGCGGTGAA+GGG	0.575003	3_3:+44686103	None:intergenic
AAGAAGAAAGGACCATTTGG+AGG	0.575349	3_3:+44685977	None:intergenic
GTGGGTTAGGATGGTGAGGG+AGG	0.577836	3_3:+44686042	None:intergenic
AAGGGTTTGAGGAAGTGAGG+TGG	0.580580	3_3:+44686121	None:intergenic
TATTATCACTTCGGATCCGG+TGG	0.582897	3_3:-44685635	Msa0453830:CDS
CCATTTGGAGGGGTATGAGG+AGG	0.582905	3_3:+44685989	None:intergenic
GGTATGAGGAGGGAAGCAGA+TGG	0.584509	3_3:+44686000	None:intergenic
GGAAAGAGAGAGGAACAAAA+GGG	0.584564	3_3:+44686198	None:intergenic
CGACGCGTTTCCACGGCGGT+CGG	0.590079	3_3:+44685717	None:intergenic
GGAAGCAGATGGTGGAGCGG+AGG	0.590296	3_3:+44686011	None:intergenic
GAGGATGAGGTTGTGGAGTG+CGG	0.590535	3_3:+44686096	None:intergenic
AGAAGAAAGGACCATTTGGA+GGG	0.591110	3_3:+44685978	None:intergenic
AGAGAGGAACAAAAGGGATG+AGG	0.592520	3_3:+44686204	None:intergenic
ATGAGGAGGGAAGCAGATGG+TGG	0.597449	3_3:+44686003	None:intergenic
CATTTGGAGGGGTATGAGGA+GGG	0.598396	3_3:+44685990	None:intergenic
AAAAGGCAATGGAAAGAGAG+AGG	0.610233	3_3:+44686188	None:intergenic
ATAAAGCATGAGACCGGAGA+CGG	0.617252	3_3:+44685655	None:intergenic
ATAACACATGATTGGGACGG+TGG	0.620196	3_3:+44685844	None:intergenic
GTCGGATTCCAACAGTGGTG+AGG	0.628146	3_3:+44685735	None:intergenic
CGTGTGGGTTAGGATGGTGA+GGG	0.629717	3_3:+44686039	None:intergenic
TGAATTCAAGATATTTCGAG+AGG	0.629871	3_3:+44685936	None:intergenic
CGGTGGAATGATGGTACACG+TGG	0.631074	3_3:+44685861	None:intergenic
GAAGAAAGGACCATTTGGAG+GGG	0.639807	3_3:+44685979	None:intergenic
CGGCGGTCGGATTCCAACAG+TGG	0.641832	3_3:+44685730	None:intergenic
TAATGAGGGAGAGGATGGAG+AGG	0.644404	3_3:+44686077	None:intergenic
GAACTGAACAATCTGGCAGT+CGG	0.662736	3_3:+44685691	None:intergenic
TGGAATGATGGTACACGTGG+AGG	0.666407	3_3:+44685864	None:intergenic
TAGATAACACATGATTGGGA+CGG	0.671340	3_3:+44685841	None:intergenic
GGTGCCAATAGCCATAATGA+GGG	0.679843	3_3:+44686063	None:intergenic
AGTAAGAGTACATGATGACG+TGG	0.708386	3_3:+44685762	None:intergenic
GATGACGTGGACGAATGAGT+TGG	0.710566	3_3:+44685775	None:intergenic
CTGTTGGAATCCGACCGCCG+TGG	0.731632	3_3:-44685727	Msa0453830:CDS
GTAACGACGCGTTTCCACGG+CGG	0.765126	3_3:+44685713	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TGAAATTTAGAATTTTTGGA+TGG	+	chr3_3:44685543-44685562	None:intergenic	20.0%
!!!	CATGTGAAATTTAGAATTTT+TGG	+	chr3_3:44685547-44685566	None:intergenic	20.0%
!!	CAAAAATTCTAAATTTCACA+TGG	-	chr3_3:44685545-44685564	Msa0453830:CDS	20.0%
!!!	TGAAATTTAGAATTTTTGGA+TGG	+	chr3_3:44685543-44685562	None:intergenic	20.0%
!!!	CATGTGAAATTTAGAATTTT+TGG	+	chr3_3:44685547-44685566	None:intergenic	20.0%
!!	CAAAAATTCTAAATTTCACA+TGG	-	chr3_3:44685545-44685564	Msa0453830:CDS	20.0%
!!!	TGTTTTTAATGCTTCTCTTT+TGG	-	chr3_3:44686218-44686237	Msa0453830:CDS	25.0%
!!!	TGTTTTTAATGCTTCTCTTT+TGG	-	chr3_3:44686218-44686237	Msa0453830:CDS	25.0%
!	AAATGGTCCTTTCTTCTTTT+GGG	-	chr3_3:44685819-44685838	Msa0453830:CDS	30.0%
	TGAATTCAAGATATTTCGAG+AGG	+	chr3_3:44685858-44685877	None:intergenic	30.0%
!	CTCATGCTTTATTATCACTT+CGG	-	chr3_3:44686147-44686166	Msa0453830:CDS	30.0%
!	AAATGGTCCTTTCTTCTTTT+GGG	-	chr3_3:44685819-44685838	Msa0453830:CDS	30.0%
	TGAATTCAAGATATTTCGAG+AGG	+	chr3_3:44685858-44685877	None:intergenic	30.0%
!	CTCATGCTTTATTATCACTT+CGG	-	chr3_3:44686147-44686166	Msa0453830:CDS	30.0%
	CAAAAGAAGAAAGGACCATT+TGG	+	chr3_3:44685820-44685839	None:intergenic	35.0%
!	CAAATGGTCCTTTCTTCTTT+TGG	-	chr3_3:44685818-44685837	Msa0453830:CDS	35.0%
	TAGATAACACATGATTGGGA+CGG	+	chr3_3:44685953-44685972	None:intergenic	35.0%
	TCCCAATCATGTGTTATCTA+TGG	-	chr3_3:44685953-44685972	Msa0453830:CDS	35.0%
	GCCATAGATAACACATGATT+GGG	+	chr3_3:44685957-44685976	None:intergenic	35.0%
	AGCCATAGATAACACATGAT+TGG	+	chr3_3:44685958-44685977	None:intergenic	35.0%
!!	AGTTGGTAAGAAGTGCAATA+GGG	+	chr3_3:44686002-44686021	None:intergenic	35.0%
	GTGATAATAAAGCATGAGAC+CGG	+	chr3_3:44686145-44686164	None:intergenic	35.0%
	CTTTATTATCACTTCGGATC+CGG	-	chr3_3:44686153-44686172	Msa0453830:CDS	35.0%
	CAAAAGAAGAAAGGACCATT+TGG	+	chr3_3:44685820-44685839	None:intergenic	35.0%
!	CAAATGGTCCTTTCTTCTTT+TGG	-	chr3_3:44685818-44685837	Msa0453830:CDS	35.0%
	TAGATAACACATGATTGGGA+CGG	+	chr3_3:44685953-44685972	None:intergenic	35.0%
	TCCCAATCATGTGTTATCTA+TGG	-	chr3_3:44685953-44685972	Msa0453830:CDS	35.0%
	GCCATAGATAACACATGATT+GGG	+	chr3_3:44685957-44685976	None:intergenic	35.0%
	AGCCATAGATAACACATGAT+TGG	+	chr3_3:44685958-44685977	None:intergenic	35.0%
!!	AGTTGGTAAGAAGTGCAATA+GGG	+	chr3_3:44686002-44686021	None:intergenic	35.0%
	GTGATAATAAAGCATGAGAC+CGG	+	chr3_3:44686145-44686164	None:intergenic	35.0%
	CTTTATTATCACTTCGGATC+CGG	-	chr3_3:44686153-44686172	Msa0453830:CDS	35.0%
	TTGGCAGAATCCTTCAACAT+TGG	-	chr3_3:44685509-44685528	Msa0453830:CDS	40.0%
	GGTAAACTAGCCAATGTTGA+AGG	+	chr3_3:44685522-44685541	None:intergenic	40.0%
	GGAAAGAGAGAGGAACAAAA+GGG	+	chr3_3:44685596-44685615	None:intergenic	40.0%
	TGGAAAGAGAGAGGAACAAA+AGG	+	chr3_3:44685597-44685616	None:intergenic	40.0%
	AAAAGGCAATGGAAAGAGAG+AGG	+	chr3_3:44685606-44685625	None:intergenic	40.0%
	AGAAGAAAGGACCATTTGGA+GGG	+	chr3_3:44685816-44685835	None:intergenic	40.0%
	AAGAAGAAAGGACCATTTGG+AGG	+	chr3_3:44685817-44685836	None:intergenic	40.0%
	ATGTAGGCCCAAAAGAAGAA+AGG	+	chr3_3:44685829-44685848	None:intergenic	40.0%
	TTTCGAGAGGTAGAAGATGT+AGG	+	chr3_3:44685845-44685864	None:intergenic	40.0%
!!	GAGTTGGTAAGAAGTGCAAT+AGG	+	chr3_3:44686003-44686022	None:intergenic	40.0%
!	AGTAAGAGTACATGATGACG+TGG	+	chr3_3:44686032-44686051	None:intergenic	40.0%
	TGAACACGAACTGAACAATC+TGG	+	chr3_3:44686110-44686129	None:intergenic	40.0%
	TTGGCAGAATCCTTCAACAT+TGG	-	chr3_3:44685509-44685528	Msa0453830:CDS	40.0%
	GGTAAACTAGCCAATGTTGA+AGG	+	chr3_3:44685522-44685541	None:intergenic	40.0%
	GGAAAGAGAGAGGAACAAAA+GGG	+	chr3_3:44685596-44685615	None:intergenic	40.0%
	TGGAAAGAGAGAGGAACAAA+AGG	+	chr3_3:44685597-44685616	None:intergenic	40.0%
	AAAAGGCAATGGAAAGAGAG+AGG	+	chr3_3:44685606-44685625	None:intergenic	40.0%
	AGAAGAAAGGACCATTTGGA+GGG	+	chr3_3:44685816-44685835	None:intergenic	40.0%
	AAGAAGAAAGGACCATTTGG+AGG	+	chr3_3:44685817-44685836	None:intergenic	40.0%
	ATGTAGGCCCAAAAGAAGAA+AGG	+	chr3_3:44685829-44685848	None:intergenic	40.0%
	TTTCGAGAGGTAGAAGATGT+AGG	+	chr3_3:44685845-44685864	None:intergenic	40.0%
!!	GAGTTGGTAAGAAGTGCAAT+AGG	+	chr3_3:44686003-44686022	None:intergenic	40.0%
!	AGTAAGAGTACATGATGACG+TGG	+	chr3_3:44686032-44686051	None:intergenic	40.0%
	TGAACACGAACTGAACAATC+TGG	+	chr3_3:44686110-44686129	None:intergenic	40.0%
	GTTGAAGGATTCTGCCAATG+AGG	+	chr3_3:44685507-44685526	None:intergenic	45.0%
	AGAGAGGAACAAAAGGGATG+AGG	+	chr3_3:44685590-44685609	None:intergenic	45.0%
	GAGGGAGAGATAAAAGGCAA+TGG	+	chr3_3:44685617-44685636	None:intergenic	45.0%
	GAGAGTGAGGGAGAGATAAA+AGG	+	chr3_3:44685623-44685642	None:intergenic	45.0%
	CAATAGCCATAATGAGGGAG+AGG	+	chr3_3:44685726-44685745	None:intergenic	45.0%
	CTCTCCCTCATTATGGCTAT+TGG	-	chr3_3:44685724-44685743	Msa0453830:CDS	45.0%
	GGTGCCAATAGCCATAATGA+GGG	+	chr3_3:44685731-44685750	None:intergenic	45.0%
	AGGTGCCAATAGCCATAATG+AGG	+	chr3_3:44685732-44685751	None:intergenic	45.0%
	GAAGAAAGGACCATTTGGAG+GGG	+	chr3_3:44685815-44685834	None:intergenic	45.0%
!	GACGTTTGATGGATCTTGAG+AGG	+	chr3_3:44685900-44685919	None:intergenic	45.0%
	GAGGAATGAGAGACGTTTGA+TGG	+	chr3_3:44685911-44685930	None:intergenic	45.0%
	ATAACACATGATTGGGACGG+TGG	+	chr3_3:44685950-44685969	None:intergenic	45.0%
	TACTACTTCCTCACCACTGT+TGG	-	chr3_3:44686048-44686067	Msa0453830:CDS	45.0%
	GAACTGAACAATCTGGCAGT+CGG	+	chr3_3:44686103-44686122	None:intergenic	45.0%
	ATAAAGCATGAGACCGGAGA+CGG	+	chr3_3:44686139-44686158	None:intergenic	45.0%
	TATTATCACTTCGGATCCGG+TGG	-	chr3_3:44686156-44686175	Msa0453830:CDS	45.0%
	GTTGAAGGATTCTGCCAATG+AGG	+	chr3_3:44685507-44685526	None:intergenic	45.0%
	AGAGAGGAACAAAAGGGATG+AGG	+	chr3_3:44685590-44685609	None:intergenic	45.0%
	GAGGGAGAGATAAAAGGCAA+TGG	+	chr3_3:44685617-44685636	None:intergenic	45.0%
	GAGAGTGAGGGAGAGATAAA+AGG	+	chr3_3:44685623-44685642	None:intergenic	45.0%
	CAATAGCCATAATGAGGGAG+AGG	+	chr3_3:44685726-44685745	None:intergenic	45.0%
	CTCTCCCTCATTATGGCTAT+TGG	-	chr3_3:44685724-44685743	Msa0453830:CDS	45.0%
	GGTGCCAATAGCCATAATGA+GGG	+	chr3_3:44685731-44685750	None:intergenic	45.0%
	AGGTGCCAATAGCCATAATG+AGG	+	chr3_3:44685732-44685751	None:intergenic	45.0%
	GAAGAAAGGACCATTTGGAG+GGG	+	chr3_3:44685815-44685834	None:intergenic	45.0%
!	GACGTTTGATGGATCTTGAG+AGG	+	chr3_3:44685900-44685919	None:intergenic	45.0%
	GAGGAATGAGAGACGTTTGA+TGG	+	chr3_3:44685911-44685930	None:intergenic	45.0%
	ATAACACATGATTGGGACGG+TGG	+	chr3_3:44685950-44685969	None:intergenic	45.0%
	TACTACTTCCTCACCACTGT+TGG	-	chr3_3:44686048-44686067	Msa0453830:CDS	45.0%
	GAACTGAACAATCTGGCAGT+CGG	+	chr3_3:44686103-44686122	None:intergenic	45.0%
	ATAAAGCATGAGACCGGAGA+CGG	+	chr3_3:44686139-44686158	None:intergenic	45.0%
	TATTATCACTTCGGATCCGG+TGG	-	chr3_3:44686156-44686175	Msa0453830:CDS	45.0%
	AGGAACAAAAGGGATGAGGC+TGG	+	chr3_3:44685586-44685605	None:intergenic	50.0%
	GAAGAGGAGAAGGAGAGTGA+GGG	+	chr3_3:44685635-44685654	None:intergenic	50.0%
	TTGAGGAAGTGAGGTGGGAT+AGG	+	chr3_3:44685667-44685686	None:intergenic	50.0%
	AGGGTTTGAGGAAGTGAGGT+GGG	+	chr3_3:44685672-44685691	None:intergenic	50.0%
	AAGGGTTTGAGGAAGTGAGG+TGG	+	chr3_3:44685673-44685692	None:intergenic	50.0%
	GTGAAGGGTTTGAGGAAGTG+AGG	+	chr3_3:44685676-44685695	None:intergenic	50.0%
	TAATGAGGGAGAGGATGGAG+AGG	+	chr3_3:44685717-44685736	None:intergenic	50.0%
	CTCCATCCTCTCCCTCATTA+TGG	-	chr3_3:44685717-44685736	Msa0453830:CDS	50.0%
	AGCCATAATGAGGGAGAGGA+TGG	+	chr3_3:44685722-44685741	None:intergenic	50.0%
!	CATTTGGAGGGGTATGAGGA+GGG	+	chr3_3:44685804-44685823	None:intergenic	50.0%
	TGGAATGATGGTACACGTGG+AGG	+	chr3_3:44685930-44685949	None:intergenic	50.0%
	TGATTGGGACGGTGGAATGA+TGG	+	chr3_3:44685942-44685961	None:intergenic	50.0%
	GATGACGTGGACGAATGAGT+TGG	+	chr3_3:44686019-44686038	None:intergenic	50.0%
	AGGAACAAAAGGGATGAGGC+TGG	+	chr3_3:44685586-44685605	None:intergenic	50.0%
	GAAGAGGAGAAGGAGAGTGA+GGG	+	chr3_3:44685635-44685654	None:intergenic	50.0%
	TTGAGGAAGTGAGGTGGGAT+AGG	+	chr3_3:44685667-44685686	None:intergenic	50.0%
	AGGGTTTGAGGAAGTGAGGT+GGG	+	chr3_3:44685672-44685691	None:intergenic	50.0%
	AAGGGTTTGAGGAAGTGAGG+TGG	+	chr3_3:44685673-44685692	None:intergenic	50.0%
	GTGAAGGGTTTGAGGAAGTG+AGG	+	chr3_3:44685676-44685695	None:intergenic	50.0%
	TAATGAGGGAGAGGATGGAG+AGG	+	chr3_3:44685717-44685736	None:intergenic	50.0%
	CTCCATCCTCTCCCTCATTA+TGG	-	chr3_3:44685717-44685736	Msa0453830:CDS	50.0%
	AGCCATAATGAGGGAGAGGA+TGG	+	chr3_3:44685722-44685741	None:intergenic	50.0%
!	CATTTGGAGGGGTATGAGGA+GGG	+	chr3_3:44685804-44685823	None:intergenic	50.0%
	TGGAATGATGGTACACGTGG+AGG	+	chr3_3:44685930-44685949	None:intergenic	50.0%
	TGATTGGGACGGTGGAATGA+TGG	+	chr3_3:44685942-44685961	None:intergenic	50.0%
	GATGACGTGGACGAATGAGT+TGG	+	chr3_3:44686019-44686038	None:intergenic	50.0%
	ATGAGGCTGGAGTGTGAGGA+GGG	+	chr3_3:44685573-44685592	None:intergenic	55.0%
	GGAAGAGGAGAAGGAGAGTG+AGG	+	chr3_3:44685636-44685655	None:intergenic	55.0%
	GGAAGTGAGGTGGGATAGGT+GGG	+	chr3_3:44685663-44685682	None:intergenic	55.0%
	AGGAAGTGAGGTGGGATAGG+TGG	+	chr3_3:44685664-44685683	None:intergenic	55.0%
	AGGTTGTGGAGTGCGGTGAA+GGG	+	chr3_3:44685691-44685710	None:intergenic	55.0%
	GAGGATGAGGTTGTGGAGTG+CGG	+	chr3_3:44685698-44685717	None:intergenic	55.0%
	GGATGGAGAGGATGAGGTTG+TGG	+	chr3_3:44685705-44685724	None:intergenic	55.0%
!!	CGTGTGGGTTAGGATGGTGA+GGG	+	chr3_3:44685755-44685774	None:intergenic	55.0%
!!	GTTAGGCGTGTGGGTTAGGA+TGG	+	chr3_3:44685761-44685780	None:intergenic	55.0%
	ATGAGGAGGGAAGCAGATGG+TGG	+	chr3_3:44685791-44685810	None:intergenic	55.0%
	GGTATGAGGAGGGAAGCAGA+TGG	+	chr3_3:44685794-44685813	None:intergenic	55.0%
!	CCATTTGGAGGGGTATGAGG+AGG	+	chr3_3:44685805-44685824	None:intergenic	55.0%
	CCTCCTCATACCCCTCCAAA+TGG	-	chr3_3:44685802-44685821	Msa0453830:CDS	55.0%
!	GGACCATTTGGAGGGGTATG+AGG	+	chr3_3:44685808-44685827	None:intergenic	55.0%
	CGGTGGAATGATGGTACACG+TGG	+	chr3_3:44685933-44685952	None:intergenic	55.0%
	GTCGGATTCCAACAGTGGTG+AGG	+	chr3_3:44686059-44686078	None:intergenic	55.0%
	TCGGTAACGACGCGTTTCCA+CGG	+	chr3_3:44686084-44686103	None:intergenic	55.0%
	TATCACTTCGGATCCGGTGG+TGG	-	chr3_3:44686159-44686178	Msa0453830:CDS	55.0%
!!	TGGTGGATGCTCTGGGATGA+AGG	-	chr3_3:44686179-44686198	Msa0453830:CDS	55.0%
!!	GATGCTCTGGGATGAAGGCT+TGG	-	chr3_3:44686184-44686203	Msa0453830:CDS	55.0%
	ATGAGGCTGGAGTGTGAGGA+GGG	+	chr3_3:44685573-44685592	None:intergenic	55.0%
	GGAAGAGGAGAAGGAGAGTG+AGG	+	chr3_3:44685636-44685655	None:intergenic	55.0%
	GGAAGTGAGGTGGGATAGGT+GGG	+	chr3_3:44685663-44685682	None:intergenic	55.0%
	AGGAAGTGAGGTGGGATAGG+TGG	+	chr3_3:44685664-44685683	None:intergenic	55.0%
	AGGTTGTGGAGTGCGGTGAA+GGG	+	chr3_3:44685691-44685710	None:intergenic	55.0%
	GAGGATGAGGTTGTGGAGTG+CGG	+	chr3_3:44685698-44685717	None:intergenic	55.0%
	GGATGGAGAGGATGAGGTTG+TGG	+	chr3_3:44685705-44685724	None:intergenic	55.0%
!!	CGTGTGGGTTAGGATGGTGA+GGG	+	chr3_3:44685755-44685774	None:intergenic	55.0%
!!	GTTAGGCGTGTGGGTTAGGA+TGG	+	chr3_3:44685761-44685780	None:intergenic	55.0%
	ATGAGGAGGGAAGCAGATGG+TGG	+	chr3_3:44685791-44685810	None:intergenic	55.0%
	GGTATGAGGAGGGAAGCAGA+TGG	+	chr3_3:44685794-44685813	None:intergenic	55.0%
!	CCATTTGGAGGGGTATGAGG+AGG	+	chr3_3:44685805-44685824	None:intergenic	55.0%
	CCTCCTCATACCCCTCCAAA+TGG	-	chr3_3:44685802-44685821	Msa0453830:CDS	55.0%
!	GGACCATTTGGAGGGGTATG+AGG	+	chr3_3:44685808-44685827	None:intergenic	55.0%
	CGGTGGAATGATGGTACACG+TGG	+	chr3_3:44685933-44685952	None:intergenic	55.0%
	GTCGGATTCCAACAGTGGTG+AGG	+	chr3_3:44686059-44686078	None:intergenic	55.0%
	TCGGTAACGACGCGTTTCCA+CGG	+	chr3_3:44686084-44686103	None:intergenic	55.0%
	TATCACTTCGGATCCGGTGG+TGG	-	chr3_3:44686159-44686178	Msa0453830:CDS	55.0%
!!	TGGTGGATGCTCTGGGATGA+AGG	-	chr3_3:44686179-44686198	Msa0453830:CDS	55.0%
!!	GATGCTCTGGGATGAAGGCT+TGG	-	chr3_3:44686184-44686203	Msa0453830:CDS	55.0%
	GATGAGGCTGGAGTGTGAGG+AGG	+	chr3_3:44685574-44685593	None:intergenic	60.0%
	AGGGATGAGGCTGGAGTGTG+AGG	+	chr3_3:44685577-44685596	None:intergenic	60.0%
	GTGGGAGAGGGAAGAGGAGA+AGG	+	chr3_3:44685645-44685664	None:intergenic	60.0%
	GGATAGGTGGGAGAGGGAAG+AGG	+	chr3_3:44685651-44685670	None:intergenic	60.0%
	GAGGTGGGATAGGTGGGAGA+GGG	+	chr3_3:44685657-44685676	None:intergenic	60.0%
	TGAGGTGGGATAGGTGGGAG+AGG	+	chr3_3:44685658-44685677	None:intergenic	60.0%
	GGAGTGCGGTGAAGGGTTTG+AGG	+	chr3_3:44685684-44685703	None:intergenic	60.0%
	GAGGTTGTGGAGTGCGGTGA+AGG	+	chr3_3:44685692-44685711	None:intergenic	60.0%
	GGGAGAGGATGGAGAGGATG+AGG	+	chr3_3:44685711-44685730	None:intergenic	60.0%
!!	GTGGGTTAGGATGGTGAGGG+AGG	+	chr3_3:44685752-44685771	None:intergenic	60.0%
!!	GCGTGTGGGTTAGGATGGTG+AGG	+	chr3_3:44685756-44685775	None:intergenic	60.0%
	GGAGGTTAGGCGTGTGGGTT+AGG	+	chr3_3:44685765-44685784	None:intergenic	60.0%
!!	CAGATGGTGGAGCGGAGGTT+AGG	+	chr3_3:44685778-44685797	None:intergenic	60.0%
!!	GAGGGAAGCAGATGGTGGAG+CGG	+	chr3_3:44685786-44685805	None:intergenic	60.0%
	GTAACGACGCGTTTCCACGG+CGG	+	chr3_3:44686081-44686100	None:intergenic	60.0%
	GTGTTCAGCTTCGCCGTCTC+CGG	-	chr3_3:44686123-44686142	Msa0453830:CDS	60.0%
	GATGAGGCTGGAGTGTGAGG+AGG	+	chr3_3:44685574-44685593	None:intergenic	60.0%
	AGGGATGAGGCTGGAGTGTG+AGG	+	chr3_3:44685577-44685596	None:intergenic	60.0%
	GTGGGAGAGGGAAGAGGAGA+AGG	+	chr3_3:44685645-44685664	None:intergenic	60.0%
	GGATAGGTGGGAGAGGGAAG+AGG	+	chr3_3:44685651-44685670	None:intergenic	60.0%
	GAGGTGGGATAGGTGGGAGA+GGG	+	chr3_3:44685657-44685676	None:intergenic	60.0%
	TGAGGTGGGATAGGTGGGAG+AGG	+	chr3_3:44685658-44685677	None:intergenic	60.0%
	GGAGTGCGGTGAAGGGTTTG+AGG	+	chr3_3:44685684-44685703	None:intergenic	60.0%
	GAGGTTGTGGAGTGCGGTGA+AGG	+	chr3_3:44685692-44685711	None:intergenic	60.0%
	GGGAGAGGATGGAGAGGATG+AGG	+	chr3_3:44685711-44685730	None:intergenic	60.0%
!!	GTGGGTTAGGATGGTGAGGG+AGG	+	chr3_3:44685752-44685771	None:intergenic	60.0%
!!	GCGTGTGGGTTAGGATGGTG+AGG	+	chr3_3:44685756-44685775	None:intergenic	60.0%
	GGAGGTTAGGCGTGTGGGTT+AGG	+	chr3_3:44685765-44685784	None:intergenic	60.0%
!!	CAGATGGTGGAGCGGAGGTT+AGG	+	chr3_3:44685778-44685797	None:intergenic	60.0%
!!	GAGGGAAGCAGATGGTGGAG+CGG	+	chr3_3:44685786-44685805	None:intergenic	60.0%
	GTAACGACGCGTTTCCACGG+CGG	+	chr3_3:44686081-44686100	None:intergenic	60.0%
	GTGTTCAGCTTCGCCGTCTC+CGG	-	chr3_3:44686123-44686142	Msa0453830:CDS	60.0%
	GGAGCGGAGGTTAGGCGTGT+GGG	+	chr3_3:44685770-44685789	None:intergenic	65.0%
	TGGAGCGGAGGTTAGGCGTG+TGG	+	chr3_3:44685771-44685790	None:intergenic	65.0%
!!	GGAAGCAGATGGTGGAGCGG+AGG	+	chr3_3:44685783-44685802	None:intergenic	65.0%
	CGGCGGTCGGATTCCAACAG+TGG	+	chr3_3:44686064-44686083	None:intergenic	65.0%
	CTGTTGGAATCCGACCGCCG+TGG	-	chr3_3:44686064-44686083	Msa0453830:CDS	65.0%
!	CACTTCGGATCCGGTGGTGG+TGG	-	chr3_3:44686162-44686181	Msa0453830:CDS	65.0%
!!	TCCGGTGGTGGTGGATGCTC+TGG	-	chr3_3:44686171-44686190	Msa0453830:CDS	65.0%
!	CCCAGAGCATCCACCACCAC+CGG	+	chr3_3:44686175-44686194	None:intergenic	65.0%
!!	CCGGTGGTGGTGGATGCTCT+GGG	-	chr3_3:44686172-44686191	Msa0453830:CDS	65.0%
	GGAGCGGAGGTTAGGCGTGT+GGG	+	chr3_3:44685770-44685789	None:intergenic	65.0%
	TGGAGCGGAGGTTAGGCGTG+TGG	+	chr3_3:44685771-44685790	None:intergenic	65.0%
!!	GGAAGCAGATGGTGGAGCGG+AGG	+	chr3_3:44685783-44685802	None:intergenic	65.0%
	CGGCGGTCGGATTCCAACAG+TGG	+	chr3_3:44686064-44686083	None:intergenic	65.0%
	CTGTTGGAATCCGACCGCCG+TGG	-	chr3_3:44686064-44686083	Msa0453830:CDS	65.0%
!	CACTTCGGATCCGGTGGTGG+TGG	-	chr3_3:44686162-44686181	Msa0453830:CDS	65.0%
!!	TCCGGTGGTGGTGGATGCTC+TGG	-	chr3_3:44686171-44686190	Msa0453830:CDS	65.0%
!	CCCAGAGCATCCACCACCAC+CGG	+	chr3_3:44686175-44686194	None:intergenic	65.0%
!!	CCGGTGGTGGTGGATGCTCT+GGG	-	chr3_3:44686172-44686191	Msa0453830:CDS	65.0%
	CGACGCGTTTCCACGGCGGT+CGG	+	chr3_3:44686077-44686096	None:intergenic	70.0%
	CGACGCGTTTCCACGGCGGT+CGG	+	chr3_3:44686077-44686096	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	44685496	44686317	44685496	ID=Msa0453830;Name=Msa0453830
chr3_3	mRNA	44685496	44686317	44685496	ID=Msa0453830-mRNA-1;Parent=Msa0453830;Name=Msa0453830-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|273
chr3_3	exon	44685496	44686317	44685496	ID=Msa0453830-mRNA-1:exon:8194;Parent=Msa0453830-mRNA-1
chr3_3	CDS	44685496	44686317	44685496	ID=Msa0453830-mRNA-1:cds;Parent=Msa0453830-mRNA-1

Gene Sequence

>Msa0453830

ATGGAAAACCTCATTGGCAGAATCCTTCAACATTGGCTAGTTTACCATCCAAAAATTCTAAATTTCACATGGAACCCTCCTCACACTCCAGCCTCATCCCTTTTGTTCCTCTCTCTTTCCATTGCCTTTTATCTCTCCCTCACTCTCCTTCTCCTCTTCCCTCTCCCACCTATCCCACCTCACTTCCTCAAACCCTTCACCGCACTCCACAACCTCATCCTCTCCATCCTCTCCCTCATTATGGCTATTGGCACCTCCCTCACCATCCTAACCCACACGCCTAACCTCCGCTCCACCATCTGCTTCCCTCCTCATACCCCTCCAAATGGTCCTTTCTTCTTTTGGGCCTACATCTTCTACCTCTCGAAATATCTTGAATTCATTGACACACTCTTCATCATCCTCTCAAGATCCATCAAACGTCTCTCATTCCTCCACGTGTACCATCATTCCACCGTCCCAATCATGTGTTATCTATGGCTTAATTCTTCTCAATCACTTTTCCCTATTGCACTTCTTACCAACTCATTCGTCCACGTCATCATGTACTCTTACTACTTCCTCACCACTGTTGGAATCCGACCGCCGTGGAAACGCGTCGTTACCGACTGCCAGATTGTTCAGTTCGTGTTCAGCTTCGCCGTCTCCGGTCTCATGCTTTATTATCACTTCGGATCCGGTGGTGGTGGATGCTCTGGGATGAAGGCTTGGTGCTTCAATGCTGTTTTTAATGCTTCTCTTTTGGCTCTTTTTCTTGATTTTCATCTCAAGAGTTATGCTAATTCTAAGAAGAAGAAACGTACTACCGAAAAAGACTCGTGA

Protein sequence

>Msa0453830

MENLIGRILQHWLVYHPKILNFTWNPPHTPASSLLFLSLSIAFYLSLTLLLLFPLPPIPPHFLKPFTALHNLILSILSLIMAIGTSLTILTHTPNLRSTICFPPHTPPNGPFFFWAYIFYLSKYLEFIDTLFIILSRSIKRLSFLHVYHHSTVPIMCYLWLNSSQSLFPIALLTNSFVHVIMYSYYFLTTVGIRPPWKRVVTDCQIVQFVFSFAVSGLMLYYHFGSGGGGCSGMKAWCFNAVFNASLLALFLDFHLKSYANSKKKKRTTEKDS*