AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0766950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766950 MtrunA17_Chr5g0418481 81.250 176 3 1 1 146 1 176 1.06e-97 278
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766950 AT2G03420.1 75.676 74 18 0 71 144 95 168 4.56e-36 122

Find 52 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAAACTGTTTCTTCAAT+TGG 0.317245 5_2:-29388470 None:intergenic
CTTCAATTGCAATTCTTCTC+TGG 0.318920 5_2:+29386862 Msa0766950:CDS
CTGCTTACGAGGGGCGGAAT+GGG 0.329826 5_2:+29388245 Msa0766950:CDS
ATGAATTTGTCCCTTGCCTC+TGG 0.354711 5_2:-29388300 None:intergenic
ACGTGGATCATTTATATGTA+TGG 0.369586 5_2:+29388538 Msa0766950:three_prime_UTR
AGCAAAGGACGGGGAGATAA+GGG 0.376721 5_2:-29386598 None:intergenic
CCTCAAAAGAAGGTTCAGTT+TGG 0.387035 5_2:+29386753 Msa0766950:CDS
CATGATGATGATGATTGGTT+TGG 0.414757 5_2:-29386670 None:intergenic
CTGCCTATCAGCTGAACACT+TGG 0.443158 5_2:-29386629 None:intergenic
CTCCCAAGTGTTCAGCTGAT+AGG 0.450504 5_2:+29386626 Msa0766950:five_prime_UTR
GTAAGAATGATGAGAAGATA+AGG 0.480601 5_2:-29386808 None:intergenic
CAAACCAATCATCATCATCA+TGG 0.480934 5_2:+29386671 Msa0766950:exon
AAGCAAAGGACGGGGAGATA+AGG 0.481712 5_2:-29386599 None:intergenic
GGGAGTTGGAAGCAAAGGAC+GGG 0.489079 5_2:-29386608 None:intergenic
CGAGGGGCGGAATGGGGAGT+TGG 0.490686 5_2:+29388252 Msa0766950:CDS
GCTCAAGCAGTTTCTTCACC+AGG 0.491458 5_2:-29387559 None:intergenic
ACTGCTTACGAGGGGCGGAA+TGG 0.499290 5_2:+29388244 Msa0766950:CDS
GAACCCATGATGATGATGAT+TGG 0.506344 5_2:-29386675 None:intergenic
CATAGCAATGTTGAAGGAGA+AGG 0.511435 5_2:+29388320 Msa0766950:CDS
TCAGCTGAACACTTGGGAGT+TGG 0.522533 5_2:-29386622 None:intergenic
CAAATTCATAGCAATGTTGA+AGG 0.527626 5_2:+29388314 Msa0766950:CDS
ACTCAGCAATCCTCAAAAGA+AGG 0.529490 5_2:+29386743 Msa0766950:CDS
CACTTGGGAGTTGGAAGCAA+AGG 0.533144 5_2:-29386613 None:intergenic
ATTCTTCTCTGGTCAACTCC+AGG 0.534134 5_2:+29386873 Msa0766950:CDS
CTCAAGCAGTTTCTTCACCA+GGG 0.535692 5_2:-29387558 None:intergenic
GTGGAAATCTGAATGAAAGA+TGG 0.538239 5_2:-29386708 None:intergenic
GATAGGCAGCAGTGTAGAGA+GGG 0.542653 5_2:+29386643 Msa0766950:five_prime_UTR
GGGAATGACTCCAGAGGCAA+GGG 0.550474 5_2:+29388290 Msa0766950:CDS
TCAAGCAGTTTCTTCACCAG+GGG 0.567433 5_2:-29387557 None:intergenic
TGCTTACGAGGGGCGGAATG+GGG 0.568619 5_2:+29388246 Msa0766950:CDS
GCAAAGGACGGGGAGATAAG+GGG 0.569816 5_2:-29386597 None:intergenic
TGGGAGTTGGAAGCAAAGGA+CGG 0.574782 5_2:-29386609 None:intergenic
AATGAAAGATGGTAATGAAG+AGG 0.576236 5_2:-29386697 None:intergenic
AGGGAATGACTCCAGAGGCA+AGG 0.577514 5_2:+29388289 Msa0766950:CDS
GAGAACAAGTACTGCTTACG+AGG 0.584541 5_2:+29388234 Msa0766950:CDS
AAACCAATCATCATCATCAT+GGG 0.587744 5_2:+29386672 Msa0766950:exon
TGCAGCTAGAGCATATAGAA+AGG 0.592119 5_2:+29388362 Msa0766950:three_prime_UTR
TAAGGGGCAGCAGAGATACA+AGG 0.593420 5_2:-29386581 None:intergenic
GTTGGTGATTGTTCAGCAGA+GGG 0.594398 5_2:+29388270 Msa0766950:CDS
AGTTGGTGATTGTTCAGCAG+AGG 0.606424 5_2:+29388269 Msa0766950:CDS
CAAGTACTGCTTACGAGGGG+CGG 0.612792 5_2:+29388239 Msa0766950:CDS
TGATAGGCAGCAGTGTAGAG+AGG 0.614861 5_2:+29386642 Msa0766950:five_prime_UTR
TGCCTATCAGCTGAACACTT+GGG 0.618533 5_2:-29386628 None:intergenic
TTGAACTAATTAATTAGACG+TGG 0.620014 5_2:+29388521 Msa0766950:three_prime_UTR
GGAGTTGGAAGCAAAGGACG+GGG 0.625031 5_2:-29386607 None:intergenic
GCAATGTTGAAGGAGAAGGT+TGG 0.630694 5_2:+29388324 Msa0766950:CDS
ATTGCAATTGAAGCAGCCAA+AGG 0.635712 5_2:-29386852 None:intergenic
AGAACAAGTACTGCTTACGA+GGG 0.671236 5_2:+29388235 Msa0766950:CDS
ATAGGCAGCAGTGTAGAGAG+GGG 0.674164 5_2:+29386644 Msa0766950:five_prime_UTR
AAGATTTAAAGAGACACCCC+TGG 0.680049 5_2:+29387541 Msa0766950:CDS
AGCAGAGGGAATGACTCCAG+AGG 0.703314 5_2:+29388284 Msa0766950:CDS
GAACAAGTACTGCTTACGAG+GGG 0.743478 5_2:+29388236 Msa0766950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATTGTTTTTGAAAA+AGG + chr5_2:29388415-29388434 Msa0766950:three_prime_UTR 10.0%
!!! AAATATATTGTTTTTGAAAA+AGG + chr5_2:29388415-29388434 Msa0766950:three_prime_UTR 10.0%
!! TAATGTCCAATTAAAAAAAT+TGG + chr5_2:29387788-29387807 Msa0766950:intron 15.0%
!! TTTGAATGGTTAATATATTT+CGG + chr5_2:29388047-29388066 Msa0766950:intron 15.0%
!! TAATGTCCAATTAAAAAAAT+TGG + chr5_2:29387788-29387807 Msa0766950:intron 15.0%
!! TTTGAATGGTTAATATATTT+CGG + chr5_2:29388047-29388066 Msa0766950:intron 15.0%
!! CTTTAATTCTTAAGAATCAT+AGG - chr5_2:29387198-29387217 None:intergenic 20.0%
!! AGTTTCATTTCATGAAATTT+AGG - chr5_2:29387454-29387473 None:intergenic 20.0%
!! TTATGATTATTATTTCACAG+AGG + chr5_2:29387487-29387506 Msa0766950:intron 20.0%
!! TAGCCTAAAAAAATTATAAG+AGG - chr5_2:29387878-29387897 None:intergenic 20.0%
!! ATTGACAAAAATGTAAGAAT+TGG + chr5_2:29387961-29387980 Msa0766950:intron 20.0%
!!! TATAGAAAGGAAAATGTTTT+AGG + chr5_2:29388375-29388394 Msa0766950:three_prime_UTR 20.0%
!! CTTTAATTCTTAAGAATCAT+AGG - chr5_2:29387198-29387217 None:intergenic 20.0%
!! AGTTTCATTTCATGAAATTT+AGG - chr5_2:29387454-29387473 None:intergenic 20.0%
!! TTATGATTATTATTTCACAG+AGG + chr5_2:29387487-29387506 Msa0766950:intron 20.0%
!! TAGCCTAAAAAAATTATAAG+AGG - chr5_2:29387878-29387897 None:intergenic 20.0%
!! ATTGACAAAAATGTAAGAAT+TGG + chr5_2:29387961-29387980 Msa0766950:intron 20.0%
!!! TATAGAAAGGAAAATGTTTT+AGG + chr5_2:29388375-29388394 Msa0766950:three_prime_UTR 20.0%
!! TAAGATAGTTTGAGTTAGTT+AGG + chr5_2:29387073-29387092 Msa0766950:intron 25.0%
! AAATCATGTATGAGAAATGT+CGG - chr5_2:29387747-29387766 None:intergenic 25.0%
! TCCAATTAAAAAAATTGGCT+CGG + chr5_2:29387793-29387812 Msa0766950:intron 25.0%
!!! GAGCCTCTTATAATTTTTTT+AGG + chr5_2:29387872-29387891 Msa0766950:intron 25.0%
! AATACATCATATCAGTAACT+AGG + chr5_2:29387908-29387927 Msa0766950:intron 25.0%
! CTCACAAAAAAGAATATTAC+AGG - chr5_2:29388000-29388019 None:intergenic 25.0%
!!! ACCATGACTTTATTTTTGAA+TGG + chr5_2:29388033-29388052 Msa0766950:intron 25.0%
! ACCATTCAAAAATAAAGTCA+TGG - chr5_2:29388037-29388056 None:intergenic 25.0%
! TTAATACCAAGACGAATAAT+AGG - chr5_2:29388127-29388146 None:intergenic 25.0%
!! ATTTTTGTGTTTTGCTCTTT+AGG + chr5_2:29388196-29388215 Msa0766950:intron 25.0%
!!! ATATTTTGAAACTATGCAAC+AGG - chr5_2:29388496-29388515 None:intergenic 25.0%
! TTGAACTAATTAATTAGACG+TGG + chr5_2:29388521-29388540 Msa0766950:three_prime_UTR 25.0%
!! TAAGATAGTTTGAGTTAGTT+AGG + chr5_2:29387073-29387092 Msa0766950:intron 25.0%
! AAATCATGTATGAGAAATGT+CGG - chr5_2:29387747-29387766 None:intergenic 25.0%
! TCCAATTAAAAAAATTGGCT+CGG + chr5_2:29387793-29387812 Msa0766950:intron 25.0%
!!! GAGCCTCTTATAATTTTTTT+AGG + chr5_2:29387872-29387891 Msa0766950:intron 25.0%
! AATACATCATATCAGTAACT+AGG + chr5_2:29387908-29387927 Msa0766950:intron 25.0%
! CTCACAAAAAAGAATATTAC+AGG - chr5_2:29388000-29388019 None:intergenic 25.0%
!!! ACCATGACTTTATTTTTGAA+TGG + chr5_2:29388033-29388052 Msa0766950:intron 25.0%
! ACCATTCAAAAATAAAGTCA+TGG - chr5_2:29388037-29388056 None:intergenic 25.0%
! TTAATACCAAGACGAATAAT+AGG - chr5_2:29388127-29388146 None:intergenic 25.0%
!! ATTTTTGTGTTTTGCTCTTT+AGG + chr5_2:29388196-29388215 Msa0766950:intron 25.0%
!!! ATATTTTGAAACTATGCAAC+AGG - chr5_2:29388496-29388515 None:intergenic 25.0%
! TTGAACTAATTAATTAGACG+TGG + chr5_2:29388521-29388540 Msa0766950:three_prime_UTR 25.0%
AAACCAATCATCATCATCAT+GGG + chr5_2:29386672-29386691 Msa0766950:exon 30.0%
! AATGAAAGATGGTAATGAAG+AGG - chr5_2:29386700-29386719 None:intergenic 30.0%
GTAAGAATGATGAGAAGATA+AGG - chr5_2:29386811-29386830 None:intergenic 30.0%
TCTTCAAAAATCAGTTCCTT+TGG + chr5_2:29386836-29386855 Msa0766950:CDS 30.0%
ATATGAGATAGAGATAGCAT+AGG - chr5_2:29387151-29387170 None:intergenic 30.0%
TGAAACCATTAAAACGTTTG+AGG - chr5_2:29387394-29387413 None:intergenic 30.0%
! CATTTTCAGCATATTTCTTC+TGG - chr5_2:29387517-29387536 None:intergenic 30.0%
!! TTTTATTTAGACAAAGTCGC+AGG + chr5_2:29387639-29387658 Msa0766950:intron 30.0%
GACATTTCTCATACATGATT+TGG + chr5_2:29387746-29387765 Msa0766950:intron 30.0%
!!! TCCGAGCCAATTTTTTTAAT+TGG - chr5_2:29387797-29387816 None:intergenic 30.0%
TTAGATCCTATTATTCGTCT+TGG + chr5_2:29388118-29388137 Msa0766950:intron 30.0%
CAAATTCATAGCAATGTTGA+AGG + chr5_2:29388314-29388333 Msa0766950:CDS 30.0%
!!! ATATTTTGAAACTCTGCAAC+AGG - chr5_2:29388401-29388420 None:intergenic 30.0%
!! AAAGCACAGTTTTGACATAT+TGG + chr5_2:29388441-29388460 Msa0766950:three_prime_UTR 30.0%
! CCTAAAACTGTTTCTTCAAT+TGG - chr5_2:29388473-29388492 None:intergenic 30.0%
! CCAATTGAAGAAACAGTTTT+AGG + chr5_2:29388470-29388489 Msa0766950:three_prime_UTR 30.0%
ACGTGGATCATTTATATGTA+TGG + chr5_2:29388538-29388557 Msa0766950:three_prime_UTR 30.0%
AAACCAATCATCATCATCAT+GGG + chr5_2:29386672-29386691 Msa0766950:exon 30.0%
! AATGAAAGATGGTAATGAAG+AGG - chr5_2:29386700-29386719 None:intergenic 30.0%
GTAAGAATGATGAGAAGATA+AGG - chr5_2:29386811-29386830 None:intergenic 30.0%
TCTTCAAAAATCAGTTCCTT+TGG + chr5_2:29386836-29386855 Msa0766950:CDS 30.0%
ATATGAGATAGAGATAGCAT+AGG - chr5_2:29387151-29387170 None:intergenic 30.0%
TGAAACCATTAAAACGTTTG+AGG - chr5_2:29387394-29387413 None:intergenic 30.0%
! CATTTTCAGCATATTTCTTC+TGG - chr5_2:29387517-29387536 None:intergenic 30.0%
!! TTTTATTTAGACAAAGTCGC+AGG + chr5_2:29387639-29387658 Msa0766950:intron 30.0%
GACATTTCTCATACATGATT+TGG + chr5_2:29387746-29387765 Msa0766950:intron 30.0%
!!! TCCGAGCCAATTTTTTTAAT+TGG - chr5_2:29387797-29387816 None:intergenic 30.0%
TTAGATCCTATTATTCGTCT+TGG + chr5_2:29388118-29388137 Msa0766950:intron 30.0%
CAAATTCATAGCAATGTTGA+AGG + chr5_2:29388314-29388333 Msa0766950:CDS 30.0%
!!! ATATTTTGAAACTCTGCAAC+AGG - chr5_2:29388401-29388420 None:intergenic 30.0%
!! AAAGCACAGTTTTGACATAT+TGG + chr5_2:29388441-29388460 Msa0766950:three_prime_UTR 30.0%
! CCTAAAACTGTTTCTTCAAT+TGG - chr5_2:29388473-29388492 None:intergenic 30.0%
! CCAATTGAAGAAACAGTTTT+AGG + chr5_2:29388470-29388489 Msa0766950:three_prime_UTR 30.0%
ACGTGGATCATTTATATGTA+TGG + chr5_2:29388538-29388557 Msa0766950:three_prime_UTR 30.0%
! CATGATGATGATGATTGGTT+TGG - chr5_2:29386673-29386692 None:intergenic 35.0%
CAAACCAATCATCATCATCA+TGG + chr5_2:29386671-29386690 Msa0766950:exon 35.0%
GTGGAAATCTGAATGAAAGA+TGG - chr5_2:29386711-29386730 None:intergenic 35.0%
! ATTGCTGAGTTTTTCACAGA+AGG - chr5_2:29386733-29386752 None:intergenic 35.0%
CTTCAATTGCAATTCTTCTC+TGG + chr5_2:29386862-29386881 Msa0766950:CDS 35.0%
! TGGTAAAAGGTTACTTTACC+TGG - chr5_2:29386894-29386913 None:intergenic 35.0%
CTGCATTAAAGCATGGTAAA+AGG - chr5_2:29386907-29386926 None:intergenic 35.0%
TGACGATTATGATTGATCGA+CGG + chr5_2:29387237-29387256 Msa0766950:intron 35.0%
! GACTTCCTCAAACGTTTTAA+TGG + chr5_2:29387386-29387405 Msa0766950:intron 35.0%
! AAAGTGCTATGTCGATATGT+CGG + chr5_2:29387707-29387726 Msa0766950:intron 35.0%
! TCATACATGATTTGGACATG+AGG + chr5_2:29387754-29387773 Msa0766950:intron 35.0%
TTATAAGAGGCTCACTCAAT+AGG - chr5_2:29387865-29387884 None:intergenic 35.0%
ATAGGATCTAATGCATACAC+CGG - chr5_2:29388109-29388128 None:intergenic 35.0%
!! CACAGTTTTGACATATTGGT+TGG + chr5_2:29388445-29388464 Msa0766950:three_prime_UTR 35.0%
! CATGATGATGATGATTGGTT+TGG - chr5_2:29386673-29386692 None:intergenic 35.0%
CAAACCAATCATCATCATCA+TGG + chr5_2:29386671-29386690 Msa0766950:exon 35.0%
GTGGAAATCTGAATGAAAGA+TGG - chr5_2:29386711-29386730 None:intergenic 35.0%
! ATTGCTGAGTTTTTCACAGA+AGG - chr5_2:29386733-29386752 None:intergenic 35.0%
CTTCAATTGCAATTCTTCTC+TGG + chr5_2:29386862-29386881 Msa0766950:CDS 35.0%
! TGGTAAAAGGTTACTTTACC+TGG - chr5_2:29386894-29386913 None:intergenic 35.0%
CTGCATTAAAGCATGGTAAA+AGG - chr5_2:29386907-29386926 None:intergenic 35.0%
TGACGATTATGATTGATCGA+CGG + chr5_2:29387237-29387256 Msa0766950:intron 35.0%
! GACTTCCTCAAACGTTTTAA+TGG + chr5_2:29387386-29387405 Msa0766950:intron 35.0%
! AAAGTGCTATGTCGATATGT+CGG + chr5_2:29387707-29387726 Msa0766950:intron 35.0%
! TCATACATGATTTGGACATG+AGG + chr5_2:29387754-29387773 Msa0766950:intron 35.0%
TTATAAGAGGCTCACTCAAT+AGG - chr5_2:29387865-29387884 None:intergenic 35.0%
ATAGGATCTAATGCATACAC+CGG - chr5_2:29388109-29388128 None:intergenic 35.0%
!! CACAGTTTTGACATATTGGT+TGG + chr5_2:29388445-29388464 Msa0766950:three_prime_UTR 35.0%
! GAACCCATGATGATGATGAT+TGG - chr5_2:29386678-29386697 None:intergenic 40.0%
ACTCAGCAATCCTCAAAAGA+AGG + chr5_2:29386743-29386762 Msa0766950:CDS 40.0%
! CCAAACTGAACCTTCTTTTG+AGG - chr5_2:29386756-29386775 None:intergenic 40.0%
CCTCAAAAGAAGGTTCAGTT+TGG + chr5_2:29386753-29386772 Msa0766950:CDS 40.0%
ATTGCAATTGAAGCAGCCAA+AGG - chr5_2:29386855-29386874 None:intergenic 40.0%
TTGCATGCTGCATTAAAGCA+TGG - chr5_2:29386914-29386933 None:intergenic 40.0%
AGTCACTAAGACACATGCTA+AGG + chr5_2:29386938-29386957 Msa0766950:intron 40.0%
!!! TCTTATTTTGCAGCACATGC+TGG + chr5_2:29387305-29387324 Msa0766950:intron 40.0%
AAGATTTAAAGAGACACCCC+TGG + chr5_2:29387541-29387560 Msa0766950:CDS 40.0%
! TCGATATGTCGGATACGTTT+TGG + chr5_2:29387718-29387737 Msa0766950:intron 40.0%
ATCTAATGCATACACCGGAT+AGG - chr5_2:29388104-29388123 None:intergenic 40.0%
! AGAACAAGTACTGCTTACGA+GGG + chr5_2:29388235-29388254 Msa0766950:CDS 40.0%
CATAGCAATGTTGAAGGAGA+AGG + chr5_2:29388320-29388339 Msa0766950:CDS 40.0%
TGCAGCTAGAGCATATAGAA+AGG + chr5_2:29388362-29388381 Msa0766950:three_prime_UTR 40.0%
! GAACCCATGATGATGATGAT+TGG - chr5_2:29386678-29386697 None:intergenic 40.0%
ACTCAGCAATCCTCAAAAGA+AGG + chr5_2:29386743-29386762 Msa0766950:CDS 40.0%
! CCAAACTGAACCTTCTTTTG+AGG - chr5_2:29386756-29386775 None:intergenic 40.0%
CCTCAAAAGAAGGTTCAGTT+TGG + chr5_2:29386753-29386772 Msa0766950:CDS 40.0%
ATTGCAATTGAAGCAGCCAA+AGG - chr5_2:29386855-29386874 None:intergenic 40.0%
TTGCATGCTGCATTAAAGCA+TGG - chr5_2:29386914-29386933 None:intergenic 40.0%
AGTCACTAAGACACATGCTA+AGG + chr5_2:29386938-29386957 Msa0766950:intron 40.0%
!!! TCTTATTTTGCAGCACATGC+TGG + chr5_2:29387305-29387324 Msa0766950:intron 40.0%
AAGATTTAAAGAGACACCCC+TGG + chr5_2:29387541-29387560 Msa0766950:CDS 40.0%
! TCGATATGTCGGATACGTTT+TGG + chr5_2:29387718-29387737 Msa0766950:intron 40.0%
ATCTAATGCATACACCGGAT+AGG - chr5_2:29388104-29388123 None:intergenic 40.0%
! AGAACAAGTACTGCTTACGA+GGG + chr5_2:29388235-29388254 Msa0766950:CDS 40.0%
CATAGCAATGTTGAAGGAGA+AGG + chr5_2:29388320-29388339 Msa0766950:CDS 40.0%
TGCAGCTAGAGCATATAGAA+AGG + chr5_2:29388362-29388381 Msa0766950:three_prime_UTR 40.0%
TGCCTATCAGCTGAACACTT+GGG - chr5_2:29386631-29386650 None:intergenic 45.0%
! GCTGAGTTTTTCACAGAAGG+TGG - chr5_2:29386730-29386749 None:intergenic 45.0%
ATTCTTCTCTGGTCAACTCC+AGG + chr5_2:29386873-29386892 Msa0766950:CDS 45.0%
GGATTCATGTCAGGAATCAC+AGG + chr5_2:29387326-29387345 Msa0766950:intron 45.0%
CGTTTGAGGAAGTCAATCTG+AGG - chr5_2:29387380-29387399 None:intergenic 45.0%
TCAAGCAGTTTCTTCACCAG+GGG - chr5_2:29387560-29387579 None:intergenic 45.0%
CTCAAGCAGTTTCTTCACCA+GGG - chr5_2:29387561-29387580 None:intergenic 45.0%
!! TCACTCAATAGGTGTTGGCT+CGG - chr5_2:29387854-29387873 None:intergenic 45.0%
GTGTCTCTCTTTGTCCTATC+CGG + chr5_2:29388087-29388106 Msa0766950:intron 45.0%
! GAGAACAAGTACTGCTTACG+AGG + chr5_2:29388234-29388253 Msa0766950:CDS 45.0%
! GAACAAGTACTGCTTACGAG+GGG + chr5_2:29388236-29388255 Msa0766950:CDS 45.0%
!! AGTTGGTGATTGTTCAGCAG+AGG + chr5_2:29388269-29388288 Msa0766950:CDS 45.0%
!! GTTGGTGATTGTTCAGCAGA+GGG + chr5_2:29388270-29388289 Msa0766950:CDS 45.0%
ATGAATTTGTCCCTTGCCTC+TGG - chr5_2:29388303-29388322 None:intergenic 45.0%
GCAATGTTGAAGGAGAAGGT+TGG + chr5_2:29388324-29388343 Msa0766950:CDS 45.0%
GCAGAGATACAAGGCTGATA+AGG - chr5_2:29386575-29386594 None:intergenic 45.0%
TGCCTATCAGCTGAACACTT+GGG - chr5_2:29386631-29386650 None:intergenic 45.0%
! GCTGAGTTTTTCACAGAAGG+TGG - chr5_2:29386730-29386749 None:intergenic 45.0%
ATTCTTCTCTGGTCAACTCC+AGG + chr5_2:29386873-29386892 Msa0766950:CDS 45.0%
GGATTCATGTCAGGAATCAC+AGG + chr5_2:29387326-29387345 Msa0766950:intron 45.0%
CGTTTGAGGAAGTCAATCTG+AGG - chr5_2:29387380-29387399 None:intergenic 45.0%
TCAAGCAGTTTCTTCACCAG+GGG - chr5_2:29387560-29387579 None:intergenic 45.0%
CTCAAGCAGTTTCTTCACCA+GGG - chr5_2:29387561-29387580 None:intergenic 45.0%
!! TCACTCAATAGGTGTTGGCT+CGG - chr5_2:29387854-29387873 None:intergenic 45.0%
GTGTCTCTCTTTGTCCTATC+CGG + chr5_2:29388087-29388106 Msa0766950:intron 45.0%
! GAGAACAAGTACTGCTTACG+AGG + chr5_2:29388234-29388253 Msa0766950:CDS 45.0%
! GAACAAGTACTGCTTACGAG+GGG + chr5_2:29388236-29388255 Msa0766950:CDS 45.0%
!! AGTTGGTGATTGTTCAGCAG+AGG + chr5_2:29388269-29388288 Msa0766950:CDS 45.0%
!! GTTGGTGATTGTTCAGCAGA+GGG + chr5_2:29388270-29388289 Msa0766950:CDS 45.0%
ATGAATTTGTCCCTTGCCTC+TGG - chr5_2:29388303-29388322 None:intergenic 45.0%
GCAATGTTGAAGGAGAAGGT+TGG + chr5_2:29388324-29388343 Msa0766950:CDS 45.0%
TAAGGGGCAGCAGAGATACA+AGG - chr5_2:29386584-29386603 None:intergenic 50.0%
AGCAAAGGACGGGGAGATAA+GGG - chr5_2:29386601-29386620 None:intergenic 50.0%
AAGCAAAGGACGGGGAGATA+AGG - chr5_2:29386602-29386621 None:intergenic 50.0%
TGGGAGTTGGAAGCAAAGGA+CGG - chr5_2:29386612-29386631 None:intergenic 50.0%
CACTTGGGAGTTGGAAGCAA+AGG - chr5_2:29386616-29386635 None:intergenic 50.0%
TCAGCTGAACACTTGGGAGT+TGG - chr5_2:29386625-29386644 None:intergenic 50.0%
CTCCCAAGTGTTCAGCTGAT+AGG + chr5_2:29386626-29386645 Msa0766950:five_prime_UTR 50.0%
CTGCCTATCAGCTGAACACT+TGG - chr5_2:29386632-29386651 None:intergenic 50.0%
TGATAGGCAGCAGTGTAGAG+AGG + chr5_2:29386642-29386661 Msa0766950:five_prime_UTR 50.0%
GATAGGCAGCAGTGTAGAGA+GGG + chr5_2:29386643-29386662 Msa0766950:five_prime_UTR 50.0%
ATAGGCAGCAGTGTAGAGAG+GGG + chr5_2:29386644-29386663 Msa0766950:five_prime_UTR 50.0%
GCACATGCTGGATTCATGTC+AGG + chr5_2:29387317-29387336 Msa0766950:intron 50.0%
ACAGGACTAGAGTCTGTTCC+TGG + chr5_2:29387344-29387363 Msa0766950:intron 50.0%
! AAGTCAATCTGAGGCAGCTC+AGG - chr5_2:29387371-29387390 None:intergenic 50.0%
GCTCAAGCAGTTTCTTCACC+AGG - chr5_2:29387562-29387581 None:intergenic 50.0%
GTGTCCAAGACGTGTCTAAC+AGG - chr5_2:29387820-29387839 None:intergenic 50.0%
GAGGCTCACTCAATAGGTGT+TGG - chr5_2:29387859-29387878 None:intergenic 50.0%
CAAAGAGAGACACCGCAACA+CGG - chr5_2:29388080-29388099 None:intergenic 50.0%
TAAGGGGCAGCAGAGATACA+AGG - chr5_2:29386584-29386603 None:intergenic 50.0%
AGCAAAGGACGGGGAGATAA+GGG - chr5_2:29386601-29386620 None:intergenic 50.0%
AAGCAAAGGACGGGGAGATA+AGG - chr5_2:29386602-29386621 None:intergenic 50.0%
TGGGAGTTGGAAGCAAAGGA+CGG - chr5_2:29386612-29386631 None:intergenic 50.0%
CACTTGGGAGTTGGAAGCAA+AGG - chr5_2:29386616-29386635 None:intergenic 50.0%
TCAGCTGAACACTTGGGAGT+TGG - chr5_2:29386625-29386644 None:intergenic 50.0%
CTCCCAAGTGTTCAGCTGAT+AGG + chr5_2:29386626-29386645 Msa0766950:five_prime_UTR 50.0%
CTGCCTATCAGCTGAACACT+TGG - chr5_2:29386632-29386651 None:intergenic 50.0%
TGATAGGCAGCAGTGTAGAG+AGG + chr5_2:29386642-29386661 Msa0766950:five_prime_UTR 50.0%
GATAGGCAGCAGTGTAGAGA+GGG + chr5_2:29386643-29386662 Msa0766950:five_prime_UTR 50.0%
ATAGGCAGCAGTGTAGAGAG+GGG + chr5_2:29386644-29386663 Msa0766950:five_prime_UTR 50.0%
GCACATGCTGGATTCATGTC+AGG + chr5_2:29387317-29387336 Msa0766950:intron 50.0%
ACAGGACTAGAGTCTGTTCC+TGG + chr5_2:29387344-29387363 Msa0766950:intron 50.0%
! AAGTCAATCTGAGGCAGCTC+AGG - chr5_2:29387371-29387390 None:intergenic 50.0%
GCTCAAGCAGTTTCTTCACC+AGG - chr5_2:29387562-29387581 None:intergenic 50.0%
GTGTCCAAGACGTGTCTAAC+AGG - chr5_2:29387820-29387839 None:intergenic 50.0%
GAGGCTCACTCAATAGGTGT+TGG - chr5_2:29387859-29387878 None:intergenic 50.0%
CAAAGAGAGACACCGCAACA+CGG - chr5_2:29388080-29388099 None:intergenic 50.0%
GCAAAGGACGGGGAGATAAG+GGG - chr5_2:29386600-29386619 None:intergenic 55.0%
GGAGTTGGAAGCAAAGGACG+GGG - chr5_2:29386610-29386629 None:intergenic 55.0%
GGGAGTTGGAAGCAAAGGAC+GGG - chr5_2:29386611-29386630 None:intergenic 55.0%
CGGACCTGTTAGACACGTCT+TGG + chr5_2:29387813-29387832 Msa0766950:intron 55.0%
TTCGGACACAAGCCGTGTTG+CGG + chr5_2:29388065-29388084 Msa0766950:intron 55.0%
! CAAGTACTGCTTACGAGGGG+CGG + chr5_2:29388239-29388258 Msa0766950:CDS 55.0%
AGCAGAGGGAATGACTCCAG+AGG + chr5_2:29388284-29388303 Msa0766950:CDS 55.0%
AGGGAATGACTCCAGAGGCA+AGG + chr5_2:29388289-29388308 Msa0766950:CDS 55.0%
GGGAATGACTCCAGAGGCAA+GGG + chr5_2:29388290-29388309 Msa0766950:CDS 55.0%
GCAAAGGACGGGGAGATAAG+GGG - chr5_2:29386600-29386619 None:intergenic 55.0%
GGAGTTGGAAGCAAAGGACG+GGG - chr5_2:29386610-29386629 None:intergenic 55.0%
GGGAGTTGGAAGCAAAGGAC+GGG - chr5_2:29386611-29386630 None:intergenic 55.0%
CGGACCTGTTAGACACGTCT+TGG + chr5_2:29387813-29387832 Msa0766950:intron 55.0%
TTCGGACACAAGCCGTGTTG+CGG + chr5_2:29388065-29388084 Msa0766950:intron 55.0%
! CAAGTACTGCTTACGAGGGG+CGG + chr5_2:29388239-29388258 Msa0766950:CDS 55.0%
AGCAGAGGGAATGACTCCAG+AGG + chr5_2:29388284-29388303 Msa0766950:CDS 55.0%
AGGGAATGACTCCAGAGGCA+AGG + chr5_2:29388289-29388308 Msa0766950:CDS 55.0%
GGGAATGACTCCAGAGGCAA+GGG + chr5_2:29388290-29388309 Msa0766950:CDS 55.0%
! ATCTGAGGCAGCTCAGGACC+AGG - chr5_2:29387365-29387384 None:intergenic 60.0%
TCGCAGGCAGCTGCAAGTGA+TGG + chr5_2:29387655-29387674 Msa0766950:intron 60.0%
ACTGCTTACGAGGGGCGGAA+TGG + chr5_2:29388244-29388263 Msa0766950:CDS 60.0%
CTGCTTACGAGGGGCGGAAT+GGG + chr5_2:29388245-29388264 Msa0766950:CDS 60.0%
TGCTTACGAGGGGCGGAATG+GGG + chr5_2:29388246-29388265 Msa0766950:CDS 60.0%
! ATCTGAGGCAGCTCAGGACC+AGG - chr5_2:29387365-29387384 None:intergenic 60.0%
TCGCAGGCAGCTGCAAGTGA+TGG + chr5_2:29387655-29387674 Msa0766950:intron 60.0%
ACTGCTTACGAGGGGCGGAA+TGG + chr5_2:29388244-29388263 Msa0766950:CDS 60.0%
CTGCTTACGAGGGGCGGAAT+GGG + chr5_2:29388245-29388264 Msa0766950:CDS 60.0%
TGCTTACGAGGGGCGGAATG+GGG + chr5_2:29388246-29388265 Msa0766950:CDS 60.0%
CGAGGGGCGGAATGGGGAGT+TGG + chr5_2:29388252-29388271 Msa0766950:CDS 70.0%
CGAGGGGCGGAATGGGGAGT+TGG + chr5_2:29388252-29388271 Msa0766950:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 29386575 29388645 29386575 ID=Msa0766950;Name=Msa0766950
chr5_2 mRNA 29386575 29388645 29386575 ID=Msa0766950-mRNA-1;Parent=Msa0766950;Name=Msa0766950-mRNA-1;_AED=0.10;_eAED=0.10;_QI=115|0.5|1|1|1|1|3|289|146
chr5_2 exon 29386575 29386894 29386575 ID=Msa0766950-mRNA-1:exon:11178;Parent=Msa0766950-mRNA-1
chr5_2 exon 29387507 29387603 29387507 ID=Msa0766950-mRNA-1:exon:11179;Parent=Msa0766950-mRNA-1
chr5_2 exon 29388218 29388645 29388218 ID=Msa0766950-mRNA-1:exon:11180;Parent=Msa0766950-mRNA-1
chr5_2 five_prime_UTR 29386575 29386689 29386575 ID=Msa0766950-mRNA-1:five_prime_utr;Parent=Msa0766950-mRNA-1
chr5_2 CDS 29386690 29386894 29386690 ID=Msa0766950-mRNA-1:cds;Parent=Msa0766950-mRNA-1
chr5_2 CDS 29387507 29387603 29387507 ID=Msa0766950-mRNA-1:cds;Parent=Msa0766950-mRNA-1
chr5_2 CDS 29388218 29388356 29388218 ID=Msa0766950-mRNA-1:cds;Parent=Msa0766950-mRNA-1
chr5_2 three_prime_UTR 29388357 29388645 29388357 ID=Msa0766950-mRNA-1:three_prime_utr;Parent=Msa0766950-mRNA-1
Gene Sequence

>Msa0766950

ATGGGTTCCTCTTCATTACCATCTTTCATTCAGATTTCCACCTTCTGTGAAAAACTCAGCAATCCTCAAAAGAAGGTTCAGTTTGGAATGACAAAAAATGACACAAAGTTTTCTTGCTCCTTATCTTCTCATCATTCTTACAATATTCTTCAAAAATCAGTTCCTTTGGCTGCTTCAATTGCAATTCTTCTCTGGTCAACTCCAGAGGAAAACCAGAAGAAATATGCTGAAAATGATGCAAGATTTAAAGAGACACCCCTGGTGAAGAAACTGCTTGAGCAATCTAAGTTGAATAAAGAGAAGAATAGTAAAGAAATTGAGAACAAGTACTGCTTACGAGGGGCGGAATGGGGAGTTGGTGATTGTTCAGCAGAGGGAATGACTCCAGAGGCAAGGGACAAATTCATAGCAATGTTGAAGGAGAAGGTTGGAGAAAAGTAA

Protein sequence

>Msa0766950

MGSSSLPSFIQISTFCEKLSNPQKKVQFGMTKNDTKFSCSLSSHHSYNILQKSVPLAASIAILLWSTPEENQKKYAENDARFKETPLVKKLLEQSKLNKEKNSKEIENKYCLRGAEWGVGDCSAEGMTPEARDKFIAMLKEKVGEK*