AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1411390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411390 MtrunA17_Chr1g0200991 95.305 213 10 0 1 213 1 213 1.44e-150 416
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411390 AT5G36120.1 76.271 118 28 0 94 211 54 171 1.97e-60 187

Find 61 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTCAAGCCTGCCAATTT+TGG 0.175186 tig0023765:+11719 Msa1411390:CDS
AAATTAGCTATTGGATTTCT+AGG 0.235118 tig0023765:+13093 Msa1411390:CDS
GTGGAAGCATGTAAAGTTTC+TGG 0.237885 tig0023765:-13021 None:intergenic
GCAGTAGCTCCATTTAATAT+TGG 0.271603 tig0023765:-12946 None:intergenic
GCTACTGCAAAATTAGCTAT+TGG 0.286164 tig0023765:+13084 Msa1411390:CDS
ATTCTTCAGAAACTTGCTTT+TGG 0.293281 tig0023765:+13627 Msa1411390:three_prime_UTR
AACTTTCCAACTGGAAGTTT+TGG 0.294268 tig0023765:-13174 None:intergenic
GATAAGGTTCCCTCCTTATC+TGG 0.301317 tig0023765:+11508 Msa1411390:five_prime_UTR
ATCTTAAAAGAGTGCATTAA+AGG 0.316351 tig0023765:+13509 Msa1411390:three_prime_UTR
TGCACAGAAATGTCTTGATT+TGG 0.323938 tig0023765:+12966 Msa1411390:CDS
CAGTAGCTCCATTTAATATT+GGG 0.326304 tig0023765:-12945 None:intergenic
GGTCCCTTCCTCTCAGCATT+TGG 0.328305 tig0023765:+13114 Msa1411390:CDS
GATTGCGTCGCCATTGTCTT+TGG 0.341765 tig0023765:-11546 None:intergenic
GTTACTCCTGTGGTTTGGTT+TGG 0.343396 tig0023765:+13279 Msa1411390:CDS
GCAACATTCCCAATATTAAA+TGG 0.349940 tig0023765:+12937 Msa1411390:CDS
ATAGACGCCAAAGCCAAAAT+TGG 0.364576 tig0023765:-11732 None:intergenic
AAAGTGATTCCACCTCTTGC+TGG 0.406086 tig0023765:+13249 Msa1411390:CDS
TCCTTCCATGCGGGAATCAC+TGG 0.420299 tig0023765:+11588 Msa1411390:CDS
CCGTTTACATTTCTTCTAGT+AGG 0.431697 tig0023765:-12856 None:intergenic
TTGGCAGGCTTGAATATTGA+AGG 0.440570 tig0023765:-11713 None:intergenic
TGGATGTTACTCCTGTGGTT+TGG 0.458618 tig0023765:+13274 Msa1411390:CDS
ATTTACACTTGCACTCATCC+TGG 0.465511 tig0023765:+13486 Msa1411390:three_prime_UTR
ACATACGGAAACTTTCCAAC+TGG 0.468445 tig0023765:-13183 None:intergenic
GATTCCACCTCTTGCTGGTG+TGG 0.479342 tig0023765:+13254 Msa1411390:CDS
TGTTCATGTTACACGGAAGT+TGG 0.493516 tig0023765:+12901 Msa1411390:CDS
AAAACCAAATGCTGAGAGGA+AGG 0.508019 tig0023765:-13118 None:intergenic
CCTACTAGAAGAAATGTAAA+CGG 0.509362 tig0023765:+12856 Msa1411390:CDS
GCTTCCACAGATTTCATGAC+AGG 0.516968 tig0023765:+13036 Msa1411390:CDS
ATTACATGTAATGTACGATA+AGG 0.518920 tig0023765:+11492 Msa1411390:five_prime_UTR
ACCAGTGATTCCCGCATGGA+AGG 0.535939 tig0023765:-11589 None:intergenic
ACTAATTGACTTGTTGTGAA+AGG 0.535966 tig0023765:-13356 None:intergenic
AATCTCAACTCCTTCCATGC+GGG 0.548178 tig0023765:+11579 Msa1411390:CDS
ACGCCAAAGCCAAAATTGGC+AGG 0.551243 tig0023765:-11728 None:intergenic
GGAGCATAAGCTATTACATA+CGG 0.551916 tig0023765:-13198 None:intergenic
ACTAAGACAGTAACCAGATA+AGG 0.554526 tig0023765:-11521 None:intergenic
TAATATTGGGAATGTTGCGC+TGG 0.558180 tig0023765:-12932 None:intergenic
TTTCTTAACGAAATATTAGT+GGG 0.558433 tig0023765:+13312 Msa1411390:CDS
GGAACGAGAAGAGGTTCAGT+AGG 0.566984 tig0023765:-13219 None:intergenic
TGGTGTGGATGTTACTCCTG+TGG 0.582978 tig0023765:+13269 Msa1411390:CDS
AAGACAGTAACCAGATAAGG+AGG 0.588124 tig0023765:-11518 None:intergenic
GGTGGAATCACTTTGCGAGT+AGG 0.596999 tig0023765:-13240 None:intergenic
CAATCCTGTCATGAAATCTG+TGG 0.605529 tig0023765:-13040 None:intergenic
TCGTGAGAATAGTCATGTCA+TGG 0.608890 tig0023765:+13148 Msa1411390:CDS
TGGTATCCAAAACTTCCAGT+TGG 0.610622 tig0023765:+13168 Msa1411390:CDS
AAACCAAATGCTGAGAGGAA+GGG 0.610645 tig0023765:-13117 None:intergenic
AGCAGTCCAAACCAAACCAC+AGG 0.619774 tig0023765:-13285 None:intergenic
GAAATATTAGTGGGTCCACA+AGG 0.621452 tig0023765:+13321 Msa1411390:CDS
TTGCGAGTAGGAACGAGAAG+AGG 0.621864 tig0023765:-13228 None:intergenic
GCAATGTTGTTCATGTTACA+CGG 0.626783 tig0023765:+12894 Msa1411390:CDS
ACATCCACACCAGCAAGAGG+TGG 0.639484 tig0023765:-13258 None:intergenic
CAGCCGTGTGGTATCCATTG+CGG 0.652811 tig0023765:-13575 None:intergenic
GTAACATCCACACCAGCAAG+AGG 0.665466 tig0023765:-13261 None:intergenic
GAACCGCAATGGATACCACA+CGG 0.669767 tig0023765:+13572 Msa1411390:three_prime_UTR
AGTTACCAGTGATTCCCGCA+TGG 0.677820 tig0023765:-11593 None:intergenic
AGACAGTAACCAGATAAGGA+GGG 0.679427 tig0023765:-11517 None:intergenic
AGAGAAAACCAAATGCTGAG+AGG 0.680045 tig0023765:-13122 None:intergenic
GTCTTAGTGACCAAAGACAA+TGG 0.682222 tig0023765:+11536 Msa1411390:exon
TAATCTCAACTCCTTCCATG+CGG 0.694188 tig0023765:+11578 Msa1411390:CDS
AGGAGAACAAGTAATCCTTG+TGG 0.699959 tig0023765:-13336 None:intergenic
ATGGATACCACACGGCTGTG+TGG 0.706468 tig0023765:+13580 Msa1411390:three_prime_UTR
AAACACACCACACAGCCGTG+TGG 0.741901 tig0023765:-13587 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATTTTTCTTTAATAAAG+AGG + tig0023765:11800-11819 Msa1411390:intron 15.0%
!!! ACATTTTTCTTTAATAAAGA+GGG + tig0023765:11801-11820 Msa1411390:intron 15.0%
!!! ATTTATTCTAAAATATGTTG+TGG + tig0023765:11901-11920 Msa1411390:intron 15.0%
!!! TTTATTCTAAAATATGTTGT+GGG + tig0023765:11902-11921 Msa1411390:intron 15.0%
!! TATTATTACTTGAACAATTA+TGG + tig0023765:12211-12230 Msa1411390:intron 15.0%
!!! AACATTTTTCTTTAATAAAG+AGG + tig0023765:11800-11819 Msa1411390:intron 15.0%
!!! ACATTTTTCTTTAATAAAGA+GGG + tig0023765:11801-11820 Msa1411390:intron 15.0%
!!! ATTTATTCTAAAATATGTTG+TGG + tig0023765:11901-11920 Msa1411390:intron 15.0%
!!! TTTATTCTAAAATATGTTGT+GGG + tig0023765:11902-11921 Msa1411390:intron 15.0%
!! TATTATTACTTGAACAATTA+TGG + tig0023765:12211-12230 Msa1411390:intron 15.0%
!! TATTGAATTAGTTGAACAAA+TGG + tig0023765:11876-11895 Msa1411390:intron 20.0%
!! AAAGAATACACATAATACTA+CGG + tig0023765:12247-12266 Msa1411390:intron 20.0%
!!! TTTTCTTAACGAAATATTAG+TGG + tig0023765:13311-13330 Msa1411390:CDS 20.0%
!! TTTCTTAACGAAATATTAGT+GGG + tig0023765:13312-13331 Msa1411390:CDS 20.0%
!!! TTGTATCTTATCATTCTTTT+TGG + tig0023765:13411-13430 Msa1411390:three_prime_UTR 20.0%
!! TATTGAATTAGTTGAACAAA+TGG + tig0023765:11876-11895 Msa1411390:intron 20.0%
!! AAAGAATACACATAATACTA+CGG + tig0023765:12247-12266 Msa1411390:intron 20.0%
!!! TTTTCTTAACGAAATATTAG+TGG + tig0023765:13311-13330 Msa1411390:CDS 20.0%
!! TTTCTTAACGAAATATTAGT+GGG + tig0023765:13312-13331 Msa1411390:CDS 20.0%
!!! TTGTATCTTATCATTCTTTT+TGG + tig0023765:13411-13430 Msa1411390:three_prime_UTR 20.0%
! ATTACATGTAATGTACGATA+AGG + tig0023765:11492-11511 Msa1411390:five_prime_UTR 25.0%
!!! TTCCATTTTTTCAATCTTGT+AGG + tig0023765:11683-11702 Msa1411390:intron 25.0%
!!! TCCATTTTTTCAATCTTGTA+GGG + tig0023765:11684-11703 Msa1411390:intron 25.0%
!! TACAATTAAGTGATAATGAG+TGG - tig0023765:11986-12005 None:intergenic 25.0%
! ACTCATTATCACTTAATTGT+AGG + tig0023765:11985-12004 Msa1411390:intron 25.0%
!!! ACAATTTGATTTGTTGAGTA+TGG - tig0023765:12445-12464 None:intergenic 25.0%
! ACTGATAAATAAGTAAAGCT+TGG - tig0023765:12511-12530 None:intergenic 25.0%
! ATTTGCTTAAACAAACTCAA+TGG - tig0023765:12726-12745 None:intergenic 25.0%
! AAATTAGCTATTGGATTTCT+AGG + tig0023765:13093-13112 Msa1411390:CDS 25.0%
!! ATCTTAAAAGAGTGCATTAA+AGG + tig0023765:13509-13528 Msa1411390:three_prime_UTR 25.0%
! ATTACATGTAATGTACGATA+AGG + tig0023765:11492-11511 Msa1411390:five_prime_UTR 25.0%
!!! TTCCATTTTTTCAATCTTGT+AGG + tig0023765:11683-11702 Msa1411390:intron 25.0%
!!! TCCATTTTTTCAATCTTGTA+GGG + tig0023765:11684-11703 Msa1411390:intron 25.0%
!! TACAATTAAGTGATAATGAG+TGG - tig0023765:11986-12005 None:intergenic 25.0%
! ACTCATTATCACTTAATTGT+AGG + tig0023765:11985-12004 Msa1411390:intron 25.0%
!!! ACAATTTGATTTGTTGAGTA+TGG - tig0023765:12445-12464 None:intergenic 25.0%
! ACTGATAAATAAGTAAAGCT+TGG - tig0023765:12511-12530 None:intergenic 25.0%
! ATTTGCTTAAACAAACTCAA+TGG - tig0023765:12726-12745 None:intergenic 25.0%
! AAATTAGCTATTGGATTTCT+AGG + tig0023765:13093-13112 Msa1411390:CDS 25.0%
!! ATCTTAAAAGAGTGCATTAA+AGG + tig0023765:13509-13528 Msa1411390:three_prime_UTR 25.0%
GAAGGTAGAAATGATAAGAA+AGG - tig0023765:11638-11657 None:intergenic 30.0%
AAAGAGTGAAAGTGAAATGA+AGG - tig0023765:11656-11675 None:intergenic 30.0%
!!! ATTTTTTCAATCTTGTAGGG+CGG + tig0023765:11687-11706 Msa1411390:intron 30.0%
CATAAATATGATACTGCAAC+TGG - tig0023765:11843-11862 None:intergenic 30.0%
CAGTTGCAGTATCATATTTA+TGG + tig0023765:11841-11860 Msa1411390:intron 30.0%
GGATTCATAAAGTTTGATGT+CGG + tig0023765:11955-11974 Msa1411390:intron 30.0%
CACTTAATTGTAGGTTTCTA+TGG + tig0023765:11994-12013 Msa1411390:intron 30.0%
CAACTAGTAACAAAAGAGTA+AGG + tig0023765:12093-12112 Msa1411390:intron 30.0%
CTAGTGTGTTCAAAATTTCA+TGG + tig0023765:12592-12611 Msa1411390:intron 30.0%
!!! CAGTTCAGTTGTTTTTTTGT+AGG + tig0023765:12639-12658 Msa1411390:intron 30.0%
CAATTTATTCCTAATCCTAC+TGG + tig0023765:12672-12691 Msa1411390:intron 30.0%
TGGAAGAAAATGCATATGTT+TGG - tig0023765:12754-12773 None:intergenic 30.0%
! TAACATGATATTTTGCAACG+TGG - tig0023765:12774-12793 None:intergenic 30.0%
CCTACTAGAAGAAATGTAAA+CGG + tig0023765:12856-12875 Msa1411390:CDS 30.0%
GCAACATTCCCAATATTAAA+TGG + tig0023765:12937-12956 Msa1411390:CDS 30.0%
CAGTAGCTCCATTTAATATT+GGG - tig0023765:12948-12967 None:intergenic 30.0%
!! ACTAATTGACTTGTTGTGAA+AGG - tig0023765:13359-13378 None:intergenic 30.0%
! AGACTAGTATAAATTTTGCG+TGG - tig0023765:13539-13558 None:intergenic 30.0%
!! ATTCTTCAGAAACTTGCTTT+TGG + tig0023765:13627-13646 Msa1411390:three_prime_UTR 30.0%
GAAGGTAGAAATGATAAGAA+AGG - tig0023765:11638-11657 None:intergenic 30.0%
AAAGAGTGAAAGTGAAATGA+AGG - tig0023765:11656-11675 None:intergenic 30.0%
!!! ATTTTTTCAATCTTGTAGGG+CGG + tig0023765:11687-11706 Msa1411390:intron 30.0%
CATAAATATGATACTGCAAC+TGG - tig0023765:11843-11862 None:intergenic 30.0%
CAGTTGCAGTATCATATTTA+TGG + tig0023765:11841-11860 Msa1411390:intron 30.0%
GGATTCATAAAGTTTGATGT+CGG + tig0023765:11955-11974 Msa1411390:intron 30.0%
CACTTAATTGTAGGTTTCTA+TGG + tig0023765:11994-12013 Msa1411390:intron 30.0%
CAACTAGTAACAAAAGAGTA+AGG + tig0023765:12093-12112 Msa1411390:intron 30.0%
CTAGTGTGTTCAAAATTTCA+TGG + tig0023765:12592-12611 Msa1411390:intron 30.0%
!!! CAGTTCAGTTGTTTTTTTGT+AGG + tig0023765:12639-12658 Msa1411390:intron 30.0%
CAATTTATTCCTAATCCTAC+TGG + tig0023765:12672-12691 Msa1411390:intron 30.0%
TGGAAGAAAATGCATATGTT+TGG - tig0023765:12754-12773 None:intergenic 30.0%
! TAACATGATATTTTGCAACG+TGG - tig0023765:12774-12793 None:intergenic 30.0%
CCTACTAGAAGAAATGTAAA+CGG + tig0023765:12856-12875 Msa1411390:CDS 30.0%
GCAACATTCCCAATATTAAA+TGG + tig0023765:12937-12956 Msa1411390:CDS 30.0%
CAGTAGCTCCATTTAATATT+GGG - tig0023765:12948-12967 None:intergenic 30.0%
!! ACTAATTGACTTGTTGTGAA+AGG - tig0023765:13359-13378 None:intergenic 30.0%
! AGACTAGTATAAATTTTGCG+TGG - tig0023765:13539-13558 None:intergenic 30.0%
!! ATTCTTCAGAAACTTGCTTT+TGG + tig0023765:13627-13646 Msa1411390:three_prime_UTR 30.0%
ACTAAGACAGTAACCAGATA+AGG - tig0023765:11524-11543 None:intergenic 35.0%
GCCCTACAAGATTGAAAAAA+TGG - tig0023765:11688-11707 None:intergenic 35.0%
! ATATTCAAGCCTGCCAATTT+TGG + tig0023765:11719-11738 Msa1411390:CDS 35.0%
TGTTGTGGGATTATGACATT+CGG + tig0023765:11916-11935 Msa1411390:intron 35.0%
ATGACATTCGGTAGTTTCTT+AGG + tig0023765:11928-11947 Msa1411390:intron 35.0%
TTCGGTAGTTTCTTAGGATT+TGG + tig0023765:11934-11953 Msa1411390:intron 35.0%
AAATCGCAAGACAATGAACA+AGG + tig0023765:12123-12142 Msa1411390:intron 35.0%
!! TAGGCACAACTTTTTGTTGT+GGG - tig0023765:12338-12357 None:intergenic 35.0%
! TTAGGCACAACTTTTTGTTG+TGG - tig0023765:12339-12358 None:intergenic 35.0%
! GAGAATTTGAGTTCCAATCT+TGG + tig0023765:12469-12488 Msa1411390:intron 35.0%
AAATAAGTAAAGCTTGGCCA+AGG - tig0023765:12505-12524 None:intergenic 35.0%
!!! TTTTTCTGGTCTTAACTCTC+TGG - tig0023765:12570-12589 None:intergenic 35.0%
! TGAACACACTAGCATTTTTC+TGG - tig0023765:12584-12603 None:intergenic 35.0%
AAACAACTGAACTGTTGCAT+GGG - tig0023765:12633-12652 None:intergenic 35.0%
AAAACAACTGAACTGTTGCA+TGG - tig0023765:12634-12653 None:intergenic 35.0%
TTATAACGACTAGTACCAGT+AGG - tig0023765:12690-12709 None:intergenic 35.0%
CCGTTTACATTTCTTCTAGT+AGG - tig0023765:12859-12878 None:intergenic 35.0%
GCAATGTTGTTCATGTTACA+CGG + tig0023765:12894-12913 Msa1411390:CDS 35.0%
GCAGTAGCTCCATTTAATAT+TGG - tig0023765:12949-12968 None:intergenic 35.0%
TGCACAGAAATGTCTTGATT+TGG + tig0023765:12966-12985 Msa1411390:CDS 35.0%
! ATAGCTAATTTTGCAGTAGC+AGG - tig0023765:13084-13103 None:intergenic 35.0%
GCTACTGCAAAATTAGCTAT+TGG + tig0023765:13084-13103 Msa1411390:CDS 35.0%
! AACTTTCCAACTGGAAGTTT+TGG - tig0023765:13177-13196 None:intergenic 35.0%
GGAGCATAAGCTATTACATA+CGG - tig0023765:13201-13220 None:intergenic 35.0%
!!! AATGCACTCTTTTAAGATCC+AGG - tig0023765:13507-13526 None:intergenic 35.0%
!! ACAACTATTTTGAACCGCAA+TGG + tig0023765:13561-13580 Msa1411390:three_prime_UTR 35.0%
ACTAAGACAGTAACCAGATA+AGG - tig0023765:11524-11543 None:intergenic 35.0%
GCCCTACAAGATTGAAAAAA+TGG - tig0023765:11688-11707 None:intergenic 35.0%
! ATATTCAAGCCTGCCAATTT+TGG + tig0023765:11719-11738 Msa1411390:CDS 35.0%
TGTTGTGGGATTATGACATT+CGG + tig0023765:11916-11935 Msa1411390:intron 35.0%
ATGACATTCGGTAGTTTCTT+AGG + tig0023765:11928-11947 Msa1411390:intron 35.0%
TTCGGTAGTTTCTTAGGATT+TGG + tig0023765:11934-11953 Msa1411390:intron 35.0%
AAATCGCAAGACAATGAACA+AGG + tig0023765:12123-12142 Msa1411390:intron 35.0%
!! TAGGCACAACTTTTTGTTGT+GGG - tig0023765:12338-12357 None:intergenic 35.0%
! TTAGGCACAACTTTTTGTTG+TGG - tig0023765:12339-12358 None:intergenic 35.0%
! GAGAATTTGAGTTCCAATCT+TGG + tig0023765:12469-12488 Msa1411390:intron 35.0%
AAATAAGTAAAGCTTGGCCA+AGG - tig0023765:12505-12524 None:intergenic 35.0%
!!! TTTTTCTGGTCTTAACTCTC+TGG - tig0023765:12570-12589 None:intergenic 35.0%
! TGAACACACTAGCATTTTTC+TGG - tig0023765:12584-12603 None:intergenic 35.0%
AAACAACTGAACTGTTGCAT+GGG - tig0023765:12633-12652 None:intergenic 35.0%
AAAACAACTGAACTGTTGCA+TGG - tig0023765:12634-12653 None:intergenic 35.0%
TTATAACGACTAGTACCAGT+AGG - tig0023765:12690-12709 None:intergenic 35.0%
CCGTTTACATTTCTTCTAGT+AGG - tig0023765:12859-12878 None:intergenic 35.0%
GCAATGTTGTTCATGTTACA+CGG + tig0023765:12894-12913 Msa1411390:CDS 35.0%
GCAGTAGCTCCATTTAATAT+TGG - tig0023765:12949-12968 None:intergenic 35.0%
TGCACAGAAATGTCTTGATT+TGG + tig0023765:12966-12985 Msa1411390:CDS 35.0%
! ATAGCTAATTTTGCAGTAGC+AGG - tig0023765:13084-13103 None:intergenic 35.0%
GCTACTGCAAAATTAGCTAT+TGG + tig0023765:13084-13103 Msa1411390:CDS 35.0%
! AACTTTCCAACTGGAAGTTT+TGG - tig0023765:13177-13196 None:intergenic 35.0%
GGAGCATAAGCTATTACATA+CGG - tig0023765:13201-13220 None:intergenic 35.0%
!!! AATGCACTCTTTTAAGATCC+AGG - tig0023765:13507-13526 None:intergenic 35.0%
!! ACAACTATTTTGAACCGCAA+TGG + tig0023765:13561-13580 Msa1411390:three_prime_UTR 35.0%
AGACAGTAACCAGATAAGGA+GGG - tig0023765:11520-11539 None:intergenic 40.0%
AAGACAGTAACCAGATAAGG+AGG - tig0023765:11521-11540 None:intergenic 40.0%
GTCTTAGTGACCAAAGACAA+TGG + tig0023765:11536-11555 Msa1411390:exon 40.0%
TAATCTCAACTCCTTCCATG+CGG + tig0023765:11578-11597 Msa1411390:CDS 40.0%
TTGGCAGGCTTGAATATTGA+AGG - tig0023765:11716-11735 None:intergenic 40.0%
ATAGACGCCAAAGCCAAAAT+TGG - tig0023765:11735-11754 None:intergenic 40.0%
! GTTTCTATGGCTACTAGCTT+TGG + tig0023765:12007-12026 Msa1411390:intron 40.0%
!! TAGCTTTGGCATAATGCTAG+TGG + tig0023765:12021-12040 Msa1411390:intron 40.0%
! AGCTTTGGCATAATGCTAGT+GGG + tig0023765:12022-12041 Msa1411390:intron 40.0%
TTGCAAACGTAGACACACTT+GGG - tig0023765:12169-12188 None:intergenic 40.0%
!! AGGCACAACTTTTTGTTGTG+GGG - tig0023765:12337-12356 None:intergenic 40.0%
AGTTGTGCCTAATGTACGTT+TGG + tig0023765:12347-12366 Msa1411390:intron 40.0%
GTTGTGCCTAATGTACGTTT+GGG + tig0023765:12348-12367 Msa1411390:intron 40.0%
!! TTTGCTCTTGCTTTTGCGTT+TGG - tig0023765:12374-12393 None:intergenic 40.0%
AAACGCAAAAGCAAGAGCAA+AGG + tig0023765:12373-12392 Msa1411390:intron 40.0%
TTGAGTATGGCTCATAGACA+CGG - tig0023765:12432-12451 None:intergenic 40.0%
! ATTTGAGTTCCAATCTTGGC+TGG + tig0023765:12473-12492 Msa1411390:intron 40.0%
AGTCAAACGTCATACTACCA+AGG + tig0023765:12528-12547 Msa1411390:intron 40.0%
TGTTCATGTTACACGGAAGT+TGG + tig0023765:12901-12920 Msa1411390:CDS 40.0%
TAATATTGGGAATGTTGCGC+TGG - tig0023765:12935-12954 None:intergenic 40.0%
! GTGGAAGCATGTAAAGTTTC+TGG - tig0023765:13024-13043 None:intergenic 40.0%
CAATCCTGTCATGAAATCTG+TGG - tig0023765:13043-13062 None:intergenic 40.0%
AAACCAAATGCTGAGAGGAA+GGG - tig0023765:13120-13139 None:intergenic 40.0%
AAAACCAAATGCTGAGAGGA+AGG - tig0023765:13121-13140 None:intergenic 40.0%
AGAGAAAACCAAATGCTGAG+AGG - tig0023765:13125-13144 None:intergenic 40.0%
TCGTGAGAATAGTCATGTCA+TGG + tig0023765:13148-13167 Msa1411390:CDS 40.0%
TGGTATCCAAAACTTCCAGT+TGG + tig0023765:13168-13187 Msa1411390:CDS 40.0%
ACATACGGAAACTTTCCAAC+TGG - tig0023765:13186-13205 None:intergenic 40.0%
! GAAATATTAGTGGGTCCACA+AGG + tig0023765:13321-13340 Msa1411390:CDS 40.0%
AGGAGAACAAGTAATCCTTG+TGG - tig0023765:13339-13358 None:intergenic 40.0%
ATTTACACTTGCACTCATCC+TGG + tig0023765:13486-13505 Msa1411390:three_prime_UTR 40.0%
AGACAGTAACCAGATAAGGA+GGG - tig0023765:11520-11539 None:intergenic 40.0%
AAGACAGTAACCAGATAAGG+AGG - tig0023765:11521-11540 None:intergenic 40.0%
GTCTTAGTGACCAAAGACAA+TGG + tig0023765:11536-11555 Msa1411390:exon 40.0%
TAATCTCAACTCCTTCCATG+CGG + tig0023765:11578-11597 Msa1411390:CDS 40.0%
TTGGCAGGCTTGAATATTGA+AGG - tig0023765:11716-11735 None:intergenic 40.0%
ATAGACGCCAAAGCCAAAAT+TGG - tig0023765:11735-11754 None:intergenic 40.0%
! GTTTCTATGGCTACTAGCTT+TGG + tig0023765:12007-12026 Msa1411390:intron 40.0%
!! TAGCTTTGGCATAATGCTAG+TGG + tig0023765:12021-12040 Msa1411390:intron 40.0%
! AGCTTTGGCATAATGCTAGT+GGG + tig0023765:12022-12041 Msa1411390:intron 40.0%
TTGCAAACGTAGACACACTT+GGG - tig0023765:12169-12188 None:intergenic 40.0%
!! AGGCACAACTTTTTGTTGTG+GGG - tig0023765:12337-12356 None:intergenic 40.0%
AGTTGTGCCTAATGTACGTT+TGG + tig0023765:12347-12366 Msa1411390:intron 40.0%
GTTGTGCCTAATGTACGTTT+GGG + tig0023765:12348-12367 Msa1411390:intron 40.0%
!! TTTGCTCTTGCTTTTGCGTT+TGG - tig0023765:12374-12393 None:intergenic 40.0%
AAACGCAAAAGCAAGAGCAA+AGG + tig0023765:12373-12392 Msa1411390:intron 40.0%
TTGAGTATGGCTCATAGACA+CGG - tig0023765:12432-12451 None:intergenic 40.0%
! ATTTGAGTTCCAATCTTGGC+TGG + tig0023765:12473-12492 Msa1411390:intron 40.0%
AGTCAAACGTCATACTACCA+AGG + tig0023765:12528-12547 Msa1411390:intron 40.0%
TGTTCATGTTACACGGAAGT+TGG + tig0023765:12901-12920 Msa1411390:CDS 40.0%
TAATATTGGGAATGTTGCGC+TGG - tig0023765:12935-12954 None:intergenic 40.0%
! GTGGAAGCATGTAAAGTTTC+TGG - tig0023765:13024-13043 None:intergenic 40.0%
CAATCCTGTCATGAAATCTG+TGG - tig0023765:13043-13062 None:intergenic 40.0%
AAACCAAATGCTGAGAGGAA+GGG - tig0023765:13120-13139 None:intergenic 40.0%
AAAACCAAATGCTGAGAGGA+AGG - tig0023765:13121-13140 None:intergenic 40.0%
AGAGAAAACCAAATGCTGAG+AGG - tig0023765:13125-13144 None:intergenic 40.0%
TCGTGAGAATAGTCATGTCA+TGG + tig0023765:13148-13167 Msa1411390:CDS 40.0%
TGGTATCCAAAACTTCCAGT+TGG + tig0023765:13168-13187 Msa1411390:CDS 40.0%
ACATACGGAAACTTTCCAAC+TGG - tig0023765:13186-13205 None:intergenic 40.0%
! GAAATATTAGTGGGTCCACA+AGG + tig0023765:13321-13340 Msa1411390:CDS 40.0%
AGGAGAACAAGTAATCCTTG+TGG - tig0023765:13339-13358 None:intergenic 40.0%
ATTTACACTTGCACTCATCC+TGG + tig0023765:13486-13505 Msa1411390:three_prime_UTR 40.0%
GATAAGGTTCCCTCCTTATC+TGG + tig0023765:11508-11527 Msa1411390:five_prime_UTR 45.0%
AATCTCAACTCCTTCCATGC+GGG + tig0023765:11579-11598 Msa1411390:CDS 45.0%
!!! AAGCCTGCCAATTTTGGCTT+TGG + tig0023765:11725-11744 Msa1411390:CDS 45.0%
GTTGCAAACGTAGACACACT+TGG - tig0023765:12170-12189 None:intergenic 45.0%
! TTTGTTGTGGGGATGAGAGT+GGG - tig0023765:12326-12345 None:intergenic 45.0%
!! TTTTGTTGTGGGGATGAGAG+TGG - tig0023765:12327-12346 None:intergenic 45.0%
GTTTGGCCCAAACGTACATT+AGG - tig0023765:12357-12376 None:intergenic 45.0%
AGGATAGTTCCAGCCAAGAT+TGG - tig0023765:12485-12504 None:intergenic 45.0%
ATCTTGGCTGGAACTATCCT+TGG + tig0023765:12485-12504 Msa1411390:intron 45.0%
ACTGAACTGTTGCATGGGAA+AGG - tig0023765:12628-12647 None:intergenic 45.0%
CGACTAGTACCAGTAGGATT+AGG - tig0023765:12684-12703 None:intergenic 45.0%
CCAAACACTGCTAAGCTAAC+TGG - tig0023765:12804-12823 None:intergenic 45.0%
! CCAGTTAGCTTAGCAGTGTT+TGG + tig0023765:12801-12820 Msa1411390:intron 45.0%
GCTTCCACAGATTTCATGAC+AGG + tig0023765:13036-13055 Msa1411390:CDS 45.0%
AAAGTGATTCCACCTCTTGC+TGG + tig0023765:13249-13268 Msa1411390:CDS 45.0%
TGGATGTTACTCCTGTGGTT+TGG + tig0023765:13274-13293 Msa1411390:CDS 45.0%
!! GTTACTCCTGTGGTTTGGTT+TGG + tig0023765:13279-13298 Msa1411390:CDS 45.0%
GATAAGGTTCCCTCCTTATC+TGG + tig0023765:11508-11527 Msa1411390:five_prime_UTR 45.0%
AATCTCAACTCCTTCCATGC+GGG + tig0023765:11579-11598 Msa1411390:CDS 45.0%
!!! AAGCCTGCCAATTTTGGCTT+TGG + tig0023765:11725-11744 Msa1411390:CDS 45.0%
GTTGCAAACGTAGACACACT+TGG - tig0023765:12170-12189 None:intergenic 45.0%
! TTTGTTGTGGGGATGAGAGT+GGG - tig0023765:12326-12345 None:intergenic 45.0%
!! TTTTGTTGTGGGGATGAGAG+TGG - tig0023765:12327-12346 None:intergenic 45.0%
GTTTGGCCCAAACGTACATT+AGG - tig0023765:12357-12376 None:intergenic 45.0%
AGGATAGTTCCAGCCAAGAT+TGG - tig0023765:12485-12504 None:intergenic 45.0%
ATCTTGGCTGGAACTATCCT+TGG + tig0023765:12485-12504 Msa1411390:intron 45.0%
ACTGAACTGTTGCATGGGAA+AGG - tig0023765:12628-12647 None:intergenic 45.0%
CGACTAGTACCAGTAGGATT+AGG - tig0023765:12684-12703 None:intergenic 45.0%
CCAAACACTGCTAAGCTAAC+TGG - tig0023765:12804-12823 None:intergenic 45.0%
! CCAGTTAGCTTAGCAGTGTT+TGG + tig0023765:12801-12820 Msa1411390:intron 45.0%
GCTTCCACAGATTTCATGAC+AGG + tig0023765:13036-13055 Msa1411390:CDS 45.0%
AAAGTGATTCCACCTCTTGC+TGG + tig0023765:13249-13268 Msa1411390:CDS 45.0%
TGGATGTTACTCCTGTGGTT+TGG + tig0023765:13274-13293 Msa1411390:CDS 45.0%
!! GTTACTCCTGTGGTTTGGTT+TGG + tig0023765:13279-13298 Msa1411390:CDS 45.0%
GATTGCGTCGCCATTGTCTT+TGG - tig0023765:11549-11568 None:intergenic 50.0%
AGTTACCAGTGATTCCCGCA+TGG - tig0023765:11596-11615 None:intergenic 50.0%
ACGCCAAAGCCAAAATTGGC+AGG - tig0023765:11731-11750 None:intergenic 50.0%
AATACCCCTGAACCGTACCA+TGG + tig0023765:12283-12302 Msa1411390:intron 50.0%
ATACCCCTGAACCGTACCAT+GGG + tig0023765:12284-12303 Msa1411390:intron 50.0%
ATAGCCCATGGTACGGTTCA+GGG - tig0023765:12291-12310 None:intergenic 50.0%
TGGCTCATAGACACGGAAGA+GGG - tig0023765:12425-12444 None:intergenic 50.0%
ATGGCTCATAGACACGGAAG+AGG - tig0023765:12426-12445 None:intergenic 50.0%
! GTCTTAACTCTCTGGTTCCC+GGG - tig0023765:12562-12581 None:intergenic 50.0%
! GGTCTTAACTCTCTGGTTCC+CGG - tig0023765:12563-12582 None:intergenic 50.0%
GGAACGAGAAGAGGTTCAGT+AGG - tig0023765:13222-13241 None:intergenic 50.0%
TTGCGAGTAGGAACGAGAAG+AGG - tig0023765:13231-13250 None:intergenic 50.0%
GGTGGAATCACTTTGCGAGT+AGG - tig0023765:13243-13262 None:intergenic 50.0%
GTAACATCCACACCAGCAAG+AGG - tig0023765:13264-13283 None:intergenic 50.0%
TGGTGTGGATGTTACTCCTG+TGG + tig0023765:13269-13288 Msa1411390:CDS 50.0%
AGCAGTCCAAACCAAACCAC+AGG - tig0023765:13288-13307 None:intergenic 50.0%
GAACCGCAATGGATACCACA+CGG + tig0023765:13572-13591 Msa1411390:three_prime_UTR 50.0%
GATTGCGTCGCCATTGTCTT+TGG - tig0023765:11549-11568 None:intergenic 50.0%
AGTTACCAGTGATTCCCGCA+TGG - tig0023765:11596-11615 None:intergenic 50.0%
ACGCCAAAGCCAAAATTGGC+AGG - tig0023765:11731-11750 None:intergenic 50.0%
AATACCCCTGAACCGTACCA+TGG + tig0023765:12283-12302 Msa1411390:intron 50.0%
ATACCCCTGAACCGTACCAT+GGG + tig0023765:12284-12303 Msa1411390:intron 50.0%
ATAGCCCATGGTACGGTTCA+GGG - tig0023765:12291-12310 None:intergenic 50.0%
TGGCTCATAGACACGGAAGA+GGG - tig0023765:12425-12444 None:intergenic 50.0%
ATGGCTCATAGACACGGAAG+AGG - tig0023765:12426-12445 None:intergenic 50.0%
! GTCTTAACTCTCTGGTTCCC+GGG - tig0023765:12562-12581 None:intergenic 50.0%
! GGTCTTAACTCTCTGGTTCC+CGG - tig0023765:12563-12582 None:intergenic 50.0%
GGAACGAGAAGAGGTTCAGT+AGG - tig0023765:13222-13241 None:intergenic 50.0%
TTGCGAGTAGGAACGAGAAG+AGG - tig0023765:13231-13250 None:intergenic 50.0%
GGTGGAATCACTTTGCGAGT+AGG - tig0023765:13243-13262 None:intergenic 50.0%
GTAACATCCACACCAGCAAG+AGG - tig0023765:13264-13283 None:intergenic 50.0%
TGGTGTGGATGTTACTCCTG+TGG + tig0023765:13269-13288 Msa1411390:CDS 50.0%
AGCAGTCCAAACCAAACCAC+AGG - tig0023765:13288-13307 None:intergenic 50.0%
GAACCGCAATGGATACCACA+CGG + tig0023765:13572-13591 Msa1411390:three_prime_UTR 50.0%
TCCTTCCATGCGGGAATCAC+TGG + tig0023765:11588-11607 Msa1411390:CDS 55.0%
ACCAGTGATTCCCGCATGGA+AGG - tig0023765:11592-11611 None:intergenic 55.0%
TAGCCCATGGTACGGTTCAG+GGG - tig0023765:12290-12309 None:intergenic 55.0%
GATAGCCCATGGTACGGTTC+AGG - tig0023765:12292-12311 None:intergenic 55.0%
GGCTCATAGACACGGAAGAG+GGG - tig0023765:12424-12443 None:intergenic 55.0%
GGTCCCTTCCTCTCAGCATT+TGG + tig0023765:13114-13133 Msa1411390:CDS 55.0%
GATTCCACCTCTTGCTGGTG+TGG + tig0023765:13254-13273 Msa1411390:CDS 55.0%
ACATCCACACCAGCAAGAGG+TGG - tig0023765:13261-13280 None:intergenic 55.0%
CAGCCGTGTGGTATCCATTG+CGG - tig0023765:13578-13597 None:intergenic 55.0%
ATGGATACCACACGGCTGTG+TGG + tig0023765:13580-13599 Msa1411390:three_prime_UTR 55.0%
AAACACACCACACAGCCGTG+TGG - tig0023765:13590-13609 None:intergenic 55.0%
TCCTTCCATGCGGGAATCAC+TGG + tig0023765:11588-11607 Msa1411390:CDS 55.0%
ACCAGTGATTCCCGCATGGA+AGG - tig0023765:11592-11611 None:intergenic 55.0%
TAGCCCATGGTACGGTTCAG+GGG - tig0023765:12290-12309 None:intergenic 55.0%
GATAGCCCATGGTACGGTTC+AGG - tig0023765:12292-12311 None:intergenic 55.0%
GGCTCATAGACACGGAAGAG+GGG - tig0023765:12424-12443 None:intergenic 55.0%
GGTCCCTTCCTCTCAGCATT+TGG + tig0023765:13114-13133 Msa1411390:CDS 55.0%
GATTCCACCTCTTGCTGGTG+TGG + tig0023765:13254-13273 Msa1411390:CDS 55.0%
ACATCCACACCAGCAAGAGG+TGG - tig0023765:13261-13280 None:intergenic 55.0%
CAGCCGTGTGGTATCCATTG+CGG - tig0023765:13578-13597 None:intergenic 55.0%
ATGGATACCACACGGCTGTG+TGG + tig0023765:13580-13599 Msa1411390:three_prime_UTR 55.0%
AAACACACCACACAGCCGTG+TGG - tig0023765:13590-13609 None:intergenic 55.0%
! GGATGAGAGTGGGAGTGTGG+GGG - tig0023765:12316-12335 None:intergenic 60.0%
! GGGATGAGAGTGGGAGTGTG+GGG - tig0023765:12317-12336 None:intergenic 60.0%
! GGGGATGAGAGTGGGAGTGT+GGG - tig0023765:12318-12337 None:intergenic 60.0%
TGGGGATGAGAGTGGGAGTG+TGG - tig0023765:12319-12338 None:intergenic 60.0%
TAGACACGGAAGAGGGGCGA+GGG - tig0023765:12418-12437 None:intergenic 60.0%
ATAGACACGGAAGAGGGGCG+AGG - tig0023765:12419-12438 None:intergenic 60.0%
ACTACCAAGGCCCCTTCTCC+CGG + tig0023765:12541-12560 Msa1411390:intron 60.0%
! TCTCTGGTTCCCGGGAGAAG+GGG - tig0023765:12554-12573 None:intergenic 60.0%
! CTCTCTGGTTCCCGGGAGAA+GGG - tig0023765:12555-12574 None:intergenic 60.0%
! ACTCTCTGGTTCCCGGGAGA+AGG - tig0023765:12556-12575 None:intergenic 60.0%
! GGATGAGAGTGGGAGTGTGG+GGG - tig0023765:12316-12335 None:intergenic 60.0%
! GGGATGAGAGTGGGAGTGTG+GGG - tig0023765:12317-12336 None:intergenic 60.0%
! GGGGATGAGAGTGGGAGTGT+GGG - tig0023765:12318-12337 None:intergenic 60.0%
TGGGGATGAGAGTGGGAGTG+TGG - tig0023765:12319-12338 None:intergenic 60.0%
TAGACACGGAAGAGGGGCGA+GGG - tig0023765:12418-12437 None:intergenic 60.0%
ATAGACACGGAAGAGGGGCG+AGG - tig0023765:12419-12438 None:intergenic 60.0%
ACTACCAAGGCCCCTTCTCC+CGG + tig0023765:12541-12560 Msa1411390:intron 60.0%
! TCTCTGGTTCCCGGGAGAAG+GGG - tig0023765:12554-12573 None:intergenic 60.0%
! CTCTCTGGTTCCCGGGAGAA+GGG - tig0023765:12555-12574 None:intergenic 60.0%
! ACTCTCTGGTTCCCGGGAGA+AGG - tig0023765:12556-12575 None:intergenic 60.0%
GGGGGCGATAGCCCATGGTA+CGG - tig0023765:12298-12317 None:intergenic 65.0%
AGTGTGGGGGCGATAGCCCA+TGG - tig0023765:12303-12322 None:intergenic 65.0%
CTACCAAGGCCCCTTCTCCC+GGG + tig0023765:12542-12561 Msa1411390:intron 65.0%
GGGGGCGATAGCCCATGGTA+CGG - tig0023765:12298-12317 None:intergenic 65.0%
AGTGTGGGGGCGATAGCCCA+TGG - tig0023765:12303-12322 None:intergenic 65.0%
CTACCAAGGCCCCTTCTCCC+GGG + tig0023765:12542-12561 Msa1411390:intron 65.0%
GTTCCCGGGAGAAGGGGCCT+TGG - tig0023765:12548-12567 None:intergenic 70.0%
GTTCCCGGGAGAAGGGGCCT+TGG - tig0023765:12548-12567 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0023765 gene 11475 13655 11475 ID=Msa1411390;Name=Msa1411390
tig0023765 mRNA 11475 13655 11475 ID=Msa1411390-mRNA-1;Parent=Msa1411390;Name=Msa1411390-mRNA-1;_AED=0.05;_eAED=0.05;_QI=80|1|1|1|1|1|3|278|213
tig0023765 exon 11475 11609 11475 ID=Msa1411390-mRNA-1:exon:20099;Parent=Msa1411390-mRNA-1
tig0023765 exon 11705 11754 11705 ID=Msa1411390-mRNA-1:exon:20100;Parent=Msa1411390-mRNA-1
tig0023765 exon 12841 13655 12841 ID=Msa1411390-mRNA-1:exon:20101;Parent=Msa1411390-mRNA-1
tig0023765 five_prime_UTR 11475 11554 11475 ID=Msa1411390-mRNA-1:five_prime_utr;Parent=Msa1411390-mRNA-1
tig0023765 CDS 11555 11609 11555 ID=Msa1411390-mRNA-1:cds;Parent=Msa1411390-mRNA-1
tig0023765 CDS 11705 11754 11705 ID=Msa1411390-mRNA-1:cds;Parent=Msa1411390-mRNA-1
tig0023765 CDS 12841 13377 12841 ID=Msa1411390-mRNA-1:cds;Parent=Msa1411390-mRNA-1
tig0023765 three_prime_UTR 13378 13655 13378 ID=Msa1411390-mRNA-1:three_prime_utr;Parent=Msa1411390-mRNA-1
Gene Sequence

>Msa1411390

ATGGCGACGCAATCTTATCTTGTTAATCTCAACTCCTTCCATGCGGGAATCACTGGGCGGAATCCTTCAATATTCAAGCCTGCCAATTTTGGCTTTGGCGTCTATAAAAGTTTGAAGCATCCTACTAGAAGAAATGTAAACGGAAGTTCACGAATCATGCAATGTTGTTCATGTTACACGGAAGTTGGAGCTTCTGCCAGCGCAACATTCCCAATATTAAATGGAGCTACTGCACAGAAATGTCTTGATTTGGATGTTGACTTGAATATCTTCAAGCTTAACATGCCAGAAACTTTACATGCTTCCACAGATTTCATGACAGGATTGATGCTTGCTGATATTGATCCTGCTACTGCAAAATTAGCTATTGGATTTCTAGGTCCCTTCCTCTCAGCATTTGGTTTTCTCTTTATCGTGAGAATAGTCATGTCATGGTATCCAAAACTTCCAGTTGGAAAGTTTCCGTATGTAATAGCTTATGCTCCTACTGAACCTCTTCTCGTTCCTACTCGCAAAGTGATTCCACCTCTTGCTGGTGTGGATGTTACTCCTGTGGTTTGGTTTGGACTGCTTAGTTTTCTTAACGAAATATTAGTGGGTCCACAAGGATTACTTGTTCTCCTTTCACAACAAGTCAATTAG

Protein sequence

>Msa1411390

MATQSYLVNLNSFHAGITGRNPSIFKPANFGFGVYKSLKHPTRRNVNGSSRIMQCCSCYTEVGASASATFPILNGATAQKCLDLDVDLNIFKLNMPETLHASTDFMTGLMLADIDPATAKLAIGFLGPFLSAFGFLFIVRIVMSWYPKLPVGKFPYVIAYAPTEPLLVPTRKVIPPLAGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQVN*