AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1206500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206500 MtrunA17_Chr4g0055541 95.736 258 7 1 1 254 1 258 0.0 501
Msa1206500 MtrunA17_Chr4g0055531 76.923 78 7 3 176 253 1 67 5.77e-31 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206500 AT4G17600.1 58.209 268 82 9 9 253 1 261 6.94e-94 277
Msa1206500 AT5G47110.1 54.231 260 98 3 5 250 1 253 2.43e-92 273

Find 82 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTAAGTGAATGTGAAAT+TGG 0.145280 8_1:-63584326 Msa1206500:three_prime_UTR
TTGTCATTGCTGGATGATTC+TGG 0.199235 8_1:+63584963 None:intergenic
CTGTTAGTAAACTCCTTTCT+AGG 0.242211 8_1:+63584207 None:intergenic
CCTGAAGCTGAACTACTTAA+TGG 0.270926 8_1:-63584879 Msa1206500:intron
CTTGGGATTTGATGCAGTTT+AGG 0.275261 8_1:-63586408 Msa1206500:CDS
CAGAGGCAAGAAGGAGAAAA+TGG 0.288966 8_1:-63584998 Msa1206500:CDS
AGGATTCTTTATGACATATC+TGG 0.306621 8_1:-63584735 Msa1206500:CDS
CTAGATGGGTTGCTGGGACT+TGG 0.308595 8_1:-63586426 Msa1206500:CDS
GTTGTTGCTGTGATGGGGTT+TGG 0.321435 8_1:+63586645 None:intergenic
AATATCTCTGTTGGGACAAA+TGG 0.327366 8_1:-63586508 Msa1206500:CDS
AACAACTATGTCTATGTCTA+TGG 0.327759 8_1:-63586716 Msa1206500:CDS
CCATTAAGTAGTTCAGCTTC+AGG 0.328770 8_1:+63584879 None:intergenic
TGCAAAAGAAGTTGTTCATT+TGG 0.330402 8_1:+63584681 None:intergenic
GTGGATCCTAGATGGGTTGC+TGG 0.337107 8_1:-63586433 Msa1206500:CDS
TCCTGTTGCTGAGGAAGTTA+AGG 0.351393 8_1:-63586470 Msa1206500:CDS
TAGATGGGTTGCTGGGACTT+GGG 0.360135 8_1:-63586425 Msa1206500:CDS
GCAGGTCGTGCCGCAATGAT+AGG 0.391276 8_1:-63584755 Msa1206500:intron
CACTACAGGATTGTCATTGC+TGG 0.391810 8_1:+63584953 None:intergenic
TCTATCTCATCCTTTGAGAA+TGG 0.407619 8_1:+63586866 None:intergenic
AAAGGAGAGAGGGAGAATAA+AGG 0.426062 8_1:+63586589 None:intergenic
TGTCATTGCTGGATGATTCT+GGG 0.426373 8_1:+63584964 None:intergenic
ACCTTAACTTCCTCAGCAAC+AGG 0.427561 8_1:+63586469 None:intergenic
CACCTCCATTGTACCTTGGT+GGG 0.440364 8_1:-63584925 Msa1206500:CDS
CCATTGTACCTTGGTGGGCA+TGG 0.442929 8_1:-63584920 Msa1206500:CDS
ACACCTCCATTGTACCTTGG+TGG 0.444291 8_1:-63584926 Msa1206500:CDS
GAGATAGAAGTGAGAGAGAG+AGG 0.445148 8_1:-63586851 Msa1206500:five_prime_UTR
AAAGAGGTTGTTGCTGTGAT+GGG 0.448159 8_1:+63586639 None:intergenic
TCTTAAGTGAATGTGAAATT+GGG 0.450263 8_1:-63584325 Msa1206500:three_prime_UTR
CTTGGTGGGCATGGATCAAA+AGG 0.454670 8_1:-63584911 Msa1206500:CDS
CTATCTCATCCTTTGAGAAT+GGG 0.455940 8_1:+63586867 None:intergenic
TCTCCTTTGAGAGCTTCAGC+TGG 0.464697 8_1:-63586574 Msa1206500:CDS
CAAGTCCCAGCAACCCATCT+AGG 0.465863 8_1:+63586427 None:intergenic
GTCTGAGAGTGAGAGTAAAG+AGG 0.470984 8_1:+63586623 None:intergenic
GAGGAAGTTAAGGTTTCTAC+TGG 0.471230 8_1:-63586460 Msa1206500:CDS
GTAGTTCAGCTTCAGGGAGA+TGG 0.482198 8_1:+63584886 None:intergenic
TGGGATGCTGTTATTGATGC+TGG 0.487504 8_1:-63586367 Msa1206500:intron
TATCTGGTCGATAGCTTGAC+AGG 0.493166 8_1:-63584719 Msa1206500:CDS
ACAAGCAATGGCAAGCAACT+TGG 0.494549 8_1:-63584559 Msa1206500:CDS
GTCCCAACAGAGATATTCTC+AGG 0.497364 8_1:+63586514 None:intergenic
CTGAAGCTCTCAAAGGAGAG+AGG 0.497577 8_1:+63586578 None:intergenic
TAAAGTTGCATTGATGATGT+TGG 0.497636 8_1:+63586749 None:intergenic
ATATCTCTGTTGGGACAAAT+GGG 0.501225 8_1:-63586507 Msa1206500:CDS
CATTAAGTAGTTCAGCTTCA+GGG 0.512069 8_1:+63584880 None:intergenic
CACCTGAGAATATCTCTGTT+GGG 0.512810 8_1:-63586516 Msa1206500:CDS
AACTCTTCTCTTCGTAGCAG+TGG 0.516899 8_1:-63584657 Msa1206500:CDS
GTGGTTGAGATTCTAGTAAG+AGG 0.522550 8_1:+63586682 None:intergenic
TGGATCCTAGATGGGTTGCT+GGG 0.524372 8_1:-63586432 Msa1206500:CDS
CCACCTGAGAATATCTCTGT+TGG 0.527412 8_1:-63586517 Msa1206500:CDS
TAAAGAGGTTGTTGCTGTGA+TGG 0.527773 8_1:+63586638 None:intergenic
TGAAGCTCTCAAAGGAGAGA+GGG 0.529054 8_1:+63586579 None:intergenic
ACTCTTCTCTTCGTAGCAGT+GGG 0.529406 8_1:-63584656 Msa1206500:CDS
CATAGACATAGTTGTTGACA+TGG 0.536011 8_1:+63586723 None:intergenic
CGAGTGAAGTAATCCTAGAA+AGG 0.537463 8_1:-63584220 Msa1206500:three_prime_UTR
TTGACACCTCCATTGTACCT+TGG 0.538618 8_1:-63584929 Msa1206500:CDS
TTCTGCTGTTCCTGTTGCTG+AGG 0.541706 8_1:-63586479 Msa1206500:CDS
GCACTAGCAAGATTATAATA+CGG 0.556628 8_1:+63584444 None:intergenic
GAGAGAGGGAGAATAAAGGA+AGG 0.556971 8_1:+63586593 None:intergenic
GCAATGGCAAGCAACTTGGC+AGG 0.558161 8_1:-63584555 Msa1206500:CDS
GTTCCAGCTGAAGCTCTCAA+AGG 0.564912 8_1:+63586571 None:intergenic
ATGGAGGTGTCAAACACTAC+AGG 0.565063 8_1:+63584939 None:intergenic
ACAGAGATATTCTCAGGTGG+TGG 0.567214 8_1:+63586520 None:intergenic
CCATGCCCACCAAGGTACAA+TGG 0.590303 8_1:+63584920 None:intergenic
AAGAGGTTGTTGCTGTGATG+GGG 0.604087 8_1:+63586640 None:intergenic
ACTTCTCATCAGGAAGAATG+AGG 0.608234 8_1:-63584627 Msa1206500:CDS
ATTAAGAGACAAAATGCGGT+AGG 0.608595 8_1:+63584475 None:intergenic
TCTTCTCTTCGTAGCAGTGG+GGG 0.615034 8_1:-63584654 Msa1206500:CDS
GTACTTGTGCCCATTCTCAA+AGG 0.615059 8_1:-63586876 Msa1206500:five_prime_UTR
CTTCTCTTCGTAGCAGTGGG+GGG 0.622227 8_1:-63584653 Msa1206500:CDS
CTCTTCTCTTCGTAGCAGTG+GGG 0.624987 8_1:-63584655 Msa1206500:CDS
ATGATGTTGGTATAAGTGTG+TGG 0.635084 8_1:+63586762 None:intergenic
CATAAAGAATCCTATCATTG+CGG 0.653449 8_1:+63584745 None:intergenic
GTGAAGTGAACTAGTGAGGT+GGG 0.653474 8_1:+63586913 None:intergenic
GTCGATAGCTTGACAGGAGT+AGG 0.654568 8_1:-63584713 Msa1206500:CDS
TTTGGAGAGTGAAGAATGAG+TGG 0.655905 8_1:+63586663 None:intergenic
AATAACAGCATCCCAATCAG+TGG 0.659865 8_1:+63586375 None:intergenic
ACAAGTACAACAACTCAATG+AGG 0.689410 8_1:+63586891 None:intergenic
TGCGGTAGGAGAGAACTACA+TGG 0.690984 8_1:+63584489 None:intergenic
CCAACAGAGATATTCTCAGG+TGG 0.707278 8_1:+63586517 None:intergenic
TGCCCACCAAGGTACAATGG+AGG 0.708718 8_1:+63584923 None:intergenic
GGTGAAGTGAACTAGTGAGG+TGG 0.717626 8_1:+63586912 None:intergenic
TGAGGTGAAGTGAACTAGTG+AGG 0.727235 8_1:+63586909 None:intergenic
CTATATTAAGAGACAAAATG+CGG 0.743314 8_1:+63584471 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACAATTATTTAATTAGAA+GGG + chr8_1:63585905-63585924 None:intergenic 10.0%
!!! AAATTTAGAATAACTAAATC+AGG + chr8_1:63585052-63585071 None:intergenic 15.0%
!!! ATTTAGTGATTAATTTGTTA+AGG + chr8_1:63585176-63585195 None:intergenic 15.0%
!! CTTACAATTATTTAATTAGA+AGG + chr8_1:63585906-63585925 None:intergenic 15.0%
!! AGAAATAGAAATAAAATTTG+AGG + chr8_1:63586035-63586054 None:intergenic 15.0%
!!! TATTTCTATTTCTATATACT+AGG - chr8_1:63586042-63586061 Msa1206500:intron 15.0%
!!! TGATACTTTTAAGAAATTAT+TGG - chr8_1:63586517-63586536 Msa1206500:CDS 15.0%
!! AAACAATGAACTTAAAGAAA+AGG + chr8_1:63584787-63584806 None:intergenic 20.0%
!! TATGTTAACTGAATAATAAG+TGG - chr8_1:63584939-63584958 Msa1206500:CDS 20.0%
!! CTACTAATCATATTGATATA+GGG - chr8_1:63585959-63585978 Msa1206500:intron 20.0%
!!! TACTTTTAAGAAATTATTGG+AGG - chr8_1:63586520-63586539 Msa1206500:CDS 20.0%
! ACTTAAAGAAAAGGTAGAAA+AGG + chr8_1:63584778-63584797 None:intergenic 25.0%
!!! CTTTAAGTTCATTGTTTTGT+AGG - chr8_1:63584790-63584809 Msa1206500:intron 25.0%
! TTAAACTCTATAGTAGGAAA+TGG + chr8_1:63584899-63584918 None:intergenic 25.0%
! AGGAAATTAAACTCTATAGT+AGG + chr8_1:63584905-63584924 None:intergenic 25.0%
! AACATAAATCATCAATCAAG+AGG + chr8_1:63584925-63584944 None:intergenic 25.0%
!!! GATTAATTTGTTAAGGCAAT+GGG + chr8_1:63585169-63585188 None:intergenic 25.0%
!!! TGATTAATTTGTTAAGGCAA+TGG + chr8_1:63585170-63585189 None:intergenic 25.0%
!! TCTGTTAATAAAAAAAGCAC+AGG - chr8_1:63585546-63585565 Msa1206500:intron 25.0%
!! CTGTTAATAAAAAAAGCACA+GGG - chr8_1:63585547-63585566 Msa1206500:intron 25.0%
!! TGTTAATAAAAAAAGCACAG+GGG - chr8_1:63585548-63585567 Msa1206500:intron 25.0%
!! AGTAGAAAGTTAAAGAGTAT+AGG + chr8_1:63585665-63585684 None:intergenic 25.0%
! AAAATGCAGAAGAAACAAAT+TGG + chr8_1:63585693-63585712 None:intergenic 25.0%
!!! AATTTGTTTCTTCTGCATTT+TGG - chr8_1:63585692-63585711 Msa1206500:intron 25.0%
! TAGACGGTAATTGTATAATA+GGG - chr8_1:63585843-63585862 Msa1206500:intron 25.0%
!! ATCCTCTTTTTATGATCAAA+AGG - chr8_1:63585927-63585946 Msa1206500:intron 25.0%
!! TCCTCTTTTTATGATCAAAA+GGG - chr8_1:63585928-63585947 Msa1206500:intron 25.0%
! ATCAATATGATTAGTAGCAA+TGG + chr8_1:63585956-63585975 None:intergenic 25.0%
! GCTACTAATCATATTGATAT+AGG - chr8_1:63585958-63585977 Msa1206500:intron 25.0%
!! AATGTACTCATTTTCTGATT+TGG - chr8_1:63586083-63586102 Msa1206500:intron 25.0%
! AAAATGAAACGAGAAAGTAA+AGG - chr8_1:63586281-63586300 Msa1206500:intron 25.0%
! CTATATTAAGAGACAAAATG+CGG + chr8_1:63586649-63586668 None:intergenic 25.0%
! TTCTTAAGTGAATGTGAAAT+TGG - chr8_1:63586791-63586810 Msa1206500:five_prime_UTR 25.0%
! TCTTAAGTGAATGTGAAATT+GGG - chr8_1:63586792-63586811 Msa1206500:five_prime_UTR 25.0%
!! TAAAGTTGCATTGATGATGT+TGG + chr8_1:63584371-63584390 None:intergenic 30.0%
AACAACTATGTCTATGTCTA+TGG - chr8_1:63584401-63584420 Msa1206500:three_prime_UTR 30.0%
!!! GAGAATAAAGGAAGGTTTTT+TGG + chr8_1:63584519-63584538 None:intergenic 30.0%
TTGATGCAGTTTAGGAAAAA+TGG - chr8_1:63584717-63584736 Msa1206500:CDS 30.0%
TGAAATTCGTTTACTTCCAT+AGG + chr8_1:63584986-63585005 None:intergenic 30.0%
!!! GAAGAAATCTGTGTTTTTTG+TGG - chr8_1:63585024-63585043 Msa1206500:intron 30.0%
AAGGATTATGTAGGAGATTT+AGG - chr8_1:63585119-63585138 Msa1206500:intron 30.0%
ACTAAATATTACCCACATAG+TGG - chr8_1:63585189-63585208 Msa1206500:intron 30.0%
CTAAATATTACCCACATAGT+GGG - chr8_1:63585190-63585209 Msa1206500:intron 30.0%
! TAGTGTATTTAGTTTACTGC+TGG - chr8_1:63585319-63585338 Msa1206500:intron 30.0%
!!! TGCTTTTTGAGTTAAAGAAG+AGG - chr8_1:63585439-63585458 Msa1206500:intron 30.0%
TTTATCTTAACAGCTGCTAA+AGG + chr8_1:63585511-63585530 None:intergenic 30.0%
! TTAAAGAGTATAGGAAGACT+AGG + chr8_1:63585656-63585675 None:intergenic 30.0%
GTAGACGGTAATTGTATAAT+AGG - chr8_1:63585842-63585861 Msa1206500:intron 30.0%
ATTAGAAGGGTAAAGATCAA+AGG + chr8_1:63585892-63585911 None:intergenic 30.0%
! CCTCTTTTTATGATCAAAAG+GGG - chr8_1:63585929-63585948 Msa1206500:intron 30.0%
! CTCTTTTTATGATCAAAAGG+GGG - chr8_1:63585930-63585949 Msa1206500:intron 30.0%
!!! AAAGGTTGTTTTTCGATAAG+AGG - chr8_1:63586299-63586318 Msa1206500:intron 30.0%
!!! AAGGTTGTTTTTCGATAAGA+GGG - chr8_1:63586300-63586319 Msa1206500:intron 30.0%
ACTTTGTTAACCTTTCTTCT+TGG - chr8_1:63586332-63586351 Msa1206500:intron 30.0%
CTTTGTTAACCTTTCTTCTT+GGG - chr8_1:63586333-63586352 Msa1206500:intron 30.0%
CATAAAGAATCCTATCATTG+CGG + chr8_1:63586375-63586394 None:intergenic 30.0%
AGGATTCTTTATGACATATC+TGG - chr8_1:63586382-63586401 Msa1206500:CDS 30.0%
TGCAAAAGAAGTTGTTCATT+TGG + chr8_1:63586439-63586458 None:intergenic 30.0%
! CTACATTTTATGACAAGCAA+TGG - chr8_1:63586546-63586565 Msa1206500:CDS 30.0%
CACTTCCAAAAAAGATTAGT+GGG - chr8_1:63586598-63586617 Msa1206500:CDS 30.0%
!!! ACAATCCCACTAATCTTTTT+TGG + chr8_1:63586606-63586625 None:intergenic 30.0%
GCACTAGCAAGATTATAATA+CGG + chr8_1:63586676-63586695 None:intergenic 30.0%
! TTTTTGTATGTTCGCAATGT+AGG - chr8_1:63586764-63586783 Msa1206500:five_prime_UTR 30.0%
ACAAGTACAACAACTCAATG+AGG + chr8_1:63584229-63584248 None:intergenic 35.0%
! CTATCTCATCCTTTGAGAAT+GGG + chr8_1:63584253-63584272 None:intergenic 35.0%
! TCTATCTCATCCTTTGAGAA+TGG + chr8_1:63584254-63584273 None:intergenic 35.0%
ATGATGTTGGTATAAGTGTG+TGG + chr8_1:63584358-63584377 None:intergenic 35.0%
CATAGACATAGTTGTTGACA+TGG + chr8_1:63584397-63584416 None:intergenic 35.0%
AATATCTCTGTTGGGACAAA+TGG - chr8_1:63584609-63584628 Msa1206500:CDS 35.0%
ATATCTCTGTTGGGACAAAT+GGG - chr8_1:63584610-63584629 Msa1206500:CDS 35.0%
!!! TAAGGTTTCTACTGGTTTTG+TGG - chr8_1:63584665-63584684 Msa1206500:CDS 35.0%
! GAAAAATGGTACCACTGATT+GGG - chr8_1:63584731-63584750 Msa1206500:CDS 35.0%
CTGAATAATAAGTGGTACTG+TGG - chr8_1:63584947-63584966 Msa1206500:CDS 35.0%
ACCACTAGACTAATTCTTCA+GGG + chr8_1:63585080-63585099 None:intergenic 35.0%
! AAGAATTAGTCTAGTGGTCT+GGG - chr8_1:63585082-63585101 Msa1206500:intron 35.0%
! ACTCTGAAGAAGGATTATGT+AGG - chr8_1:63585110-63585129 Msa1206500:intron 35.0%
AATAACCATTGATGAGTCCA+AGG + chr8_1:63585264-63585283 None:intergenic 35.0%
TCAATGGTTATTCCTTCTTC+TGG - chr8_1:63585272-63585291 Msa1206500:intron 35.0%
CAATGGTTATTCCTTCTTCT+GGG - chr8_1:63585273-63585292 Msa1206500:intron 35.0%
TCAAAAAGCAGTGTGTTTCA+TGG + chr8_1:63585429-63585448 None:intergenic 35.0%
TAAAGAAGAGGTGAAAGATC+TGG - chr8_1:63585451-63585470 Msa1206500:intron 35.0%
!! AAAGATCTGGTTTGTTGAGT+GGG - chr8_1:63585464-63585483 Msa1206500:intron 35.0%
! CTCTTGATTTTTGCAAAGCA+GGG + chr8_1:63585586-63585605 None:intergenic 35.0%
!! TGGTTTTACATGGAAAGACA+TGG - chr8_1:63585720-63585739 Msa1206500:intron 35.0%
ATGTAGACTTAGAGTCAGTT+TGG - chr8_1:63585761-63585780 Msa1206500:intron 35.0%
TGTAGACTTAGAGTCAGTTT+GGG - chr8_1:63585762-63585781 Msa1206500:intron 35.0%
AGTCAGTTTGGGTAAACTTA+TGG - chr8_1:63585773-63585792 Msa1206500:intron 35.0%
AAAAGTTTCTTGCAGTACAG+CGG - chr8_1:63585808-63585827 Msa1206500:intron 35.0%
! CCCCTTTTGATCATAAAAAG+AGG + chr8_1:63585932-63585951 None:intergenic 35.0%
! TCTCTTTTACAGTTGGCATA+AGG - chr8_1:63585986-63586005 Msa1206500:intron 35.0%
CATTAAGTAGTTCAGCTTCA+GGG + chr8_1:63586240-63586259 None:intergenic 35.0%
GCACTTCCAAAAAAGATTAG+TGG - chr8_1:63586597-63586616 Msa1206500:CDS 35.0%
ATTAAGAGACAAAATGCGGT+AGG + chr8_1:63586645-63586664 None:intergenic 35.0%
CTGTTAGTAAACTCCTTTCT+AGG + chr8_1:63586913-63586932 None:intergenic 35.0%
GTGGTTGAGATTCTAGTAAG+AGG + chr8_1:63584438-63584457 None:intergenic 40.0%
TTTGGAGAGTGAAGAATGAG+TGG + chr8_1:63584457-63584476 None:intergenic 40.0%
AAAGAGGTTGTTGCTGTGAT+GGG + chr8_1:63584481-63584500 None:intergenic 40.0%
TAAAGAGGTTGTTGCTGTGA+TGG + chr8_1:63584482-63584501 None:intergenic 40.0%
AAAGGAGAGAGGGAGAATAA+AGG + chr8_1:63584531-63584550 None:intergenic 40.0%
CACCTGAGAATATCTCTGTT+GGG - chr8_1:63584601-63584620 Msa1206500:CDS 40.0%
GAGGAAGTTAAGGTTTCTAC+TGG - chr8_1:63584657-63584676 Msa1206500:CDS 40.0%
!!! TGGTTTTGTGGATCCTAGAT+GGG - chr8_1:63584677-63584696 Msa1206500:CDS 40.0%
CTTGGGATTTGATGCAGTTT+AGG - chr8_1:63584709-63584728 Msa1206500:CDS 40.0%
GGAAAAATGGTACCACTGAT+TGG - chr8_1:63584730-63584749 Msa1206500:CDS 40.0%
AATAACAGCATCCCAATCAG+TGG + chr8_1:63584745-63584764 None:intergenic 40.0%
TAAGTGGTACTGTGGTAGTA+AGG - chr8_1:63584955-63584974 Msa1206500:CDS 40.0%
TGGTAGTAAGGTTTCACCTA+TGG - chr8_1:63584967-63584986 Msa1206500:CDS 40.0%
! TCCCTGAAGAATTAGTCTAG+TGG - chr8_1:63585076-63585095 Msa1206500:intron 40.0%
GACCACTAGACTAATTCTTC+AGG + chr8_1:63585081-63585100 None:intergenic 40.0%
! GAAGAATTAGTCTAGTGGTC+TGG - chr8_1:63585081-63585100 Msa1206500:intron 40.0%
! ATTACCCACATAGTGGGAAA+AGG - chr8_1:63585196-63585215 Msa1206500:intron 40.0%
! CTATTTGGCTGTATTGACGT+TGG + chr8_1:63585364-63585383 None:intergenic 40.0%
ATACAGCCAAATAGTTACCG+AGG - chr8_1:63585370-63585389 Msa1206500:intron 40.0%
TTGAGTCCTCGGTAACTATT+TGG + chr8_1:63585379-63585398 None:intergenic 40.0%
ATAGTTACCGAGGACTCAAT+AGG - chr8_1:63585380-63585399 Msa1206500:intron 40.0%
AAAGCAGTGTGTTTCATGGT+CGG + chr8_1:63585425-63585444 None:intergenic 40.0%
!! GAAAGATCTGGTTTGTTGAG+TGG - chr8_1:63585463-63585482 Msa1206500:intron 40.0%
TTTGTTGAGTGGGAAGGATA+TGG - chr8_1:63585474-63585493 Msa1206500:intron 40.0%
GTGGGAAGGATATGGTAAAA+TGG - chr8_1:63585482-63585501 Msa1206500:intron 40.0%
! GCTCTTGATTTTTGCAAAGC+AGG + chr8_1:63585587-63585606 None:intergenic 40.0%
GCAGAAGAAACAAATTGGCA+AGG + chr8_1:63585688-63585707 None:intergenic 40.0%
!! TGTTTCTTCTGCATTTTGGC+AGG - chr8_1:63585696-63585715 Msa1206500:intron 40.0%
!! GTTTCTTCTGCATTTTGGCA+GGG - chr8_1:63585697-63585716 Msa1206500:intron 40.0%
TACATGGAAAGACATGGTTG+TGG - chr8_1:63585726-63585745 Msa1206500:intron 40.0%
! GGGTGATTCTCTTTTACAGT+TGG - chr8_1:63585979-63585998 Msa1206500:intron 40.0%
! TCCTTCTTGCCTCTGAAAAT+GGG + chr8_1:63586114-63586133 None:intergenic 40.0%
TGTCATTGCTGGATGATTCT+GGG + chr8_1:63586156-63586175 None:intergenic 40.0%
TTGTCATTGCTGGATGATTC+TGG + chr8_1:63586157-63586176 None:intergenic 40.0%
CCATTAAGTAGTTCAGCTTC+AGG + chr8_1:63586241-63586260 None:intergenic 40.0%
CCTGAAGCTGAACTACTTAA+TGG - chr8_1:63586238-63586257 Msa1206500:intron 40.0%
TGCATGATACCCAAGAAGAA+AGG + chr8_1:63586345-63586364 None:intergenic 40.0%
TTTCTTCTTGGGTATCATGC+AGG - chr8_1:63586344-63586363 Msa1206500:intron 40.0%
ACTTCTCATCAGGAAGAATG+AGG - chr8_1:63586490-63586509 Msa1206500:CDS 40.0%
CGAGTGAAGTAATCCTAGAA+AGG - chr8_1:63586897-63586916 Msa1206500:five_prime_UTR 40.0%
GTGAAGTGAACTAGTGAGGT+GGG + chr8_1:63584207-63584226 None:intergenic 45.0%
TGAGGTGAAGTGAACTAGTG+AGG + chr8_1:63584211-63584230 None:intergenic 45.0%
GTACTTGTGCCCATTCTCAA+AGG - chr8_1:63584241-63584260 Msa1206500:three_prime_UTR 45.0%
GAGATAGAAGTGAGAGAGAG+AGG - chr8_1:63584266-63584285 Msa1206500:three_prime_UTR 45.0%
AAGAGGTTGTTGCTGTGATG+GGG + chr8_1:63584480-63584499 None:intergenic 45.0%
GTCTGAGAGTGAGAGTAAAG+AGG + chr8_1:63584497-63584516 None:intergenic 45.0%
GAGAGAGGGAGAATAAAGGA+AGG + chr8_1:63584527-63584546 None:intergenic 45.0%
TGAAGCTCTCAAAGGAGAGA+GGG + chr8_1:63584541-63584560 None:intergenic 45.0%
ACAGAGATATTCTCAGGTGG+TGG + chr8_1:63584600-63584619 None:intergenic 45.0%
CCAACAGAGATATTCTCAGG+TGG + chr8_1:63584603-63584622 None:intergenic 45.0%
CCACCTGAGAATATCTCTGT+TGG - chr8_1:63584600-63584619 Msa1206500:CDS 45.0%
GTCCCAACAGAGATATTCTC+AGG + chr8_1:63584606-63584625 None:intergenic 45.0%
TCCTGTTGCTGAGGAAGTTA+AGG - chr8_1:63584647-63584666 Msa1206500:CDS 45.0%
ACCTTAACTTCCTCAGCAAC+AGG + chr8_1:63584651-63584670 None:intergenic 45.0%
!!! CTGGTTTTGTGGATCCTAGA+TGG - chr8_1:63584676-63584695 Msa1206500:CDS 45.0%
TGGGATGCTGTTATTGATGC+TGG - chr8_1:63584750-63584769 Msa1206500:CDS 45.0%
! ATTAGTCTAGTGGTCTGGGT+TGG - chr8_1:63585086-63585105 Msa1206500:intron 45.0%
! CATGCCTTTTCCCACTATGT+GGG + chr8_1:63585203-63585222 None:intergenic 45.0%
AAGCACCTTGGACTCATCAA+TGG - chr8_1:63585256-63585275 Msa1206500:intron 45.0%
! TTCCTTCTTCTGGGAAATGC+CGG - chr8_1:63585282-63585301 Msa1206500:intron 45.0%
CACTAATGCATCAACCACAC+CGG + chr8_1:63585304-63585323 None:intergenic 45.0%
TATTGACGTTGGACTTTCCC+TGG + chr8_1:63585353-63585372 None:intergenic 45.0%
CCAAACACCTATTGAGTCCT+CGG + chr8_1:63585390-63585409 None:intergenic 45.0%
!! ATCTGGTTTGTTGAGTGGGA+AGG - chr8_1:63585468-63585487 Msa1206500:intron 45.0%
!! AAAAGCACAGGGGTTTTAGC+TGG - chr8_1:63585558-63585577 Msa1206500:intron 45.0%
AACGTGGCTGAGAAGCTATA+GGG + chr8_1:63585609-63585628 None:intergenic 45.0%
!! TTTGGCAGGGTGGTTTTACA+TGG - chr8_1:63585710-63585729 Msa1206500:intron 45.0%
! GCGGCTACTAGTTTAGTAGA+CGG - chr8_1:63585827-63585846 Msa1206500:intron 45.0%
! TTGGTCCTTCCCATTTTCAG+AGG - chr8_1:63586102-63586121 Msa1206500:intron 45.0%
! TCTTGCCTCTGAAAATGGGA+AGG + chr8_1:63586110-63586129 None:intergenic 45.0%
! TCCCATTTTCAGAGGCAAGA+AGG - chr8_1:63586110-63586129 Msa1206500:intron 45.0%
! CTCCTTCTTGCCTCTGAAAA+TGG + chr8_1:63586115-63586134 None:intergenic 45.0%
CAGAGGCAAGAAGGAGAAAA+TGG - chr8_1:63586119-63586138 Msa1206500:intron 45.0%
CACTACAGGATTGTCATTGC+TGG + chr8_1:63586167-63586186 None:intergenic 45.0%
!! ATGGAGGTGTCAAACACTAC+AGG + chr8_1:63586181-63586200 None:intergenic 45.0%
TTGACACCTCCATTGTACCT+TGG - chr8_1:63586188-63586207 Msa1206500:intron 45.0%
TATCTGGTCGATAGCTTGAC+AGG - chr8_1:63586398-63586417 Msa1206500:CDS 45.0%
AACTCTTCTCTTCGTAGCAG+TGG - chr8_1:63586460-63586479 Msa1206500:CDS 45.0%
ACTCTTCTCTTCGTAGCAGT+GGG - chr8_1:63586461-63586480 Msa1206500:CDS 45.0%
ACAAGCAATGGCAAGCAACT+TGG - chr8_1:63586558-63586577 Msa1206500:CDS 45.0%
GGTGAAGTGAACTAGTGAGG+TGG + chr8_1:63584208-63584227 None:intergenic 50.0%
! GTTGTTGCTGTGATGGGGTT+TGG + chr8_1:63584475-63584494 None:intergenic 50.0%
CTGAAGCTCTCAAAGGAGAG+AGG + chr8_1:63584542-63584561 None:intergenic 50.0%
! TCTCCTTTGAGAGCTTCAGC+TGG - chr8_1:63584543-63584562 Msa1206500:CDS 50.0%
GTTCCAGCTGAAGCTCTCAA+AGG + chr8_1:63584549-63584568 None:intergenic 50.0%
TTCTGCTGTTCCTGTTGCTG+AGG - chr8_1:63584638-63584657 Msa1206500:CDS 50.0%
!! TGGATCCTAGATGGGTTGCT+GGG - chr8_1:63584685-63584704 Msa1206500:CDS 50.0%
!! TAGATGGGTTGCTGGGACTT+GGG - chr8_1:63584692-63584711 Msa1206500:CDS 50.0%
! CTGGGTTGGAACTCTGAAGA+AGG - chr8_1:63585100-63585119 Msa1206500:intron 50.0%
! CCATGCCTTTTCCCACTATG+TGG + chr8_1:63585204-63585223 None:intergenic 50.0%
! CCACATAGTGGGAAAAGGCA+TGG - chr8_1:63585201-63585220 Msa1206500:intron 50.0%
TGTGTGCATAGCAAGCACCT+TGG - chr8_1:63585244-63585263 Msa1206500:intron 50.0%
TTACTGCTGGCATGTGTTCC+AGG - chr8_1:63585332-63585351 Msa1206500:intron 50.0%
TACTGCTGGCATGTGTTCCA+GGG - chr8_1:63585333-63585352 Msa1206500:intron 50.0%
CCGAGGACTCAATAGGTGTT+TGG - chr8_1:63585387-63585406 Msa1206500:intron 50.0%
GAACGTGGCTGAGAAGCTAT+AGG + chr8_1:63585610-63585629 None:intergenic 50.0%
ATCCACCATAGCCGTGTCAA+CGG + chr8_1:63585632-63585651 None:intergenic 50.0%
!! TCTTCTGCATTTTGGCAGGG+TGG - chr8_1:63585700-63585719 Msa1206500:intron 50.0%
ACACCTCCATTGTACCTTGG+TGG - chr8_1:63586191-63586210 Msa1206500:intron 50.0%
CACCTCCATTGTACCTTGGT+GGG - chr8_1:63586192-63586211 Msa1206500:intron 50.0%
! CTTTTGATCCATGCCCACCA+AGG + chr8_1:63586208-63586227 None:intergenic 50.0%
! CTTGGTGGGCATGGATCAAA+AGG - chr8_1:63586206-63586225 Msa1206500:intron 50.0%
GTAGTTCAGCTTCAGGGAGA+TGG + chr8_1:63586234-63586253 None:intergenic 50.0%
GTCGATAGCTTGACAGGAGT+AGG - chr8_1:63586404-63586423 Msa1206500:CDS 50.0%
CTCTTCTCTTCGTAGCAGTG+GGG - chr8_1:63586462-63586481 Msa1206500:CDS 50.0%
TCTTCTCTTCGTAGCAGTGG+GGG - chr8_1:63586463-63586482 Msa1206500:CDS 50.0%
TGCGGTAGGAGAGAACTACA+TGG + chr8_1:63586631-63586650 None:intergenic 50.0%
!! GTGGATCCTAGATGGGTTGC+TGG - chr8_1:63584684-63584703 Msa1206500:CDS 55.0%
CAAGTCCCAGCAACCCATCT+AGG + chr8_1:63584693-63584712 None:intergenic 55.0%
!! CTAGATGGGTTGCTGGGACT+TGG - chr8_1:63584691-63584710 Msa1206500:CDS 55.0%
CACCGGCATTTCCCAGAAGA+AGG + chr8_1:63585287-63585306 None:intergenic 55.0%
! TCTTCTGGGAAATGCCGGTG+TGG - chr8_1:63585287-63585306 Msa1206500:intron 55.0%
GTGTGTTTCATGGTCGGCGT+TGG + chr8_1:63585419-63585438 None:intergenic 55.0%
TCAGCCACGTTCCGTTGACA+CGG - chr8_1:63585618-63585637 Msa1206500:intron 55.0%
ATAGCCGTGTCAACGGAACG+TGG + chr8_1:63585625-63585644 None:intergenic 55.0%
ACGTTCCGTTGACACGGCTA+TGG - chr8_1:63585624-63585643 Msa1206500:intron 55.0%
TTCCGTTGACACGGCTATGG+TGG - chr8_1:63585627-63585646 Msa1206500:intron 55.0%
TGCCCACCAAGGTACAATGG+AGG + chr8_1:63586197-63586216 None:intergenic 55.0%
CCATGCCCACCAAGGTACAA+TGG + chr8_1:63586200-63586219 None:intergenic 55.0%
! CCATTGTACCTTGGTGGGCA+TGG - chr8_1:63586197-63586216 Msa1206500:intron 55.0%
CTTCTCTTCGTAGCAGTGGG+GGG - chr8_1:63586464-63586483 Msa1206500:CDS 55.0%
!! TGGGGGGAGTACTTCTCATC+AGG - chr8_1:63586480-63586499 Msa1206500:CDS 55.0%
GCAATGGCAAGCAACTTGGC+AGG - chr8_1:63586562-63586581 Msa1206500:CDS 55.0%
GCAGGTCGTGCCGCAATGAT+AGG - chr8_1:63586362-63586381 Msa1206500:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 63584193 63586946 63584193 ID=Msa1206500;Name=Msa1206500
chr8_1 mRNA 63584193 63586946 63584193 ID=Msa1206500-mRNA-1;Parent=Msa1206500;Name=Msa1206500-mRNA-1;_AED=0.16;_eAED=0.16;_QI=203|1|1|1|1|1|3|330|254
chr8_1 exon 63584193 63584773 63584193 ID=Msa1206500-mRNA-1:exon:20665;Parent=Msa1206500-mRNA-1
chr8_1 exon 63584880 63585017 63584880 ID=Msa1206500-mRNA-1:exon:20664;Parent=Msa1206500-mRNA-1
chr8_1 exon 63586368 63586946 63586368 ID=Msa1206500-mRNA-1:exon:20663;Parent=Msa1206500-mRNA-1
chr8_1 five_prime_UTR 63586744 63586946 63586744 ID=Msa1206500-mRNA-1:five_prime_utr;Parent=Msa1206500-mRNA-1
chr8_1 CDS 63586368 63586743 63586368 ID=Msa1206500-mRNA-1:cds;Parent=Msa1206500-mRNA-1
chr8_1 CDS 63584880 63585017 63584880 ID=Msa1206500-mRNA-1:cds;Parent=Msa1206500-mRNA-1
chr8_1 CDS 63584523 63584773 63584523 ID=Msa1206500-mRNA-1:cds;Parent=Msa1206500-mRNA-1
chr8_1 three_prime_UTR 63584193 63584522 63584193 ID=Msa1206500-mRNA-1:three_prime_utr;Parent=Msa1206500-mRNA-1
Gene Sequence

>Msa1206500

ATGTCAACAACTATGTCTATGTCTATGGCTTCTTTTTCTCCTCTTACTAGAATCTCAACCACTCATTCTTCACTCTCCAAACCCCATCACAGCAACAACCTCTTTACTCTCACTCTCAGACCAAAAAACCTTCCTTTATTCTCCCTCTCTCCTTTGAGAGCTTCAGCTGGAACTTCTGATTCAGCTGATACTGCAGTGAAACCACCACCTGAGAATATCTCTGTTGGGACAAATGGGTCTGCTTCTGCTGTTCCTGTTGCTGAGGAAGTTAAGGTTTCTACTGGTTTTGTGGATCCTAGATGGGTTGCTGGGACTTGGGATTTGATGCAGTTTAGGAAAAATGGTACCACTGATTGGGATGCTGTTATTGATGCTGAGGCAAGAAGGAGAAAATGGCTCGAGACTAACCCAGAATCATCCAGCAATGACAATCCTGTAGTGTTTGACACCTCCATTGTACCTTGGTGGGCATGGATCAAAAGGTTCCATCTCCCTGAAGCTGAACTACTTAATGGTCGTGCCGCAATGATAGGATTCTTTATGACATATCTGGTCGATAGCTTGACAGGAGTAGGTCTTGTTGACCAAATGAACAACTTCTTTTGCAAAACTCTTCTCTTCGTAGCAGTGGGGGGAGTACTTCTCATCAGGAAGAATGAGGATGTTGATACTTTTAAGAAATTATTGGAGGAGACTACATTTTATGACAAGCAATGGCAAGCAACTTGGCAGGATGAGAACTCAAGCACTTCCAAAAAAGATTAG

Protein sequence

>Msa1206500

MSTTMSMSMASFSPLTRISTTHSSLSKPHHSNNLFTLTLRPKNLPLFSLSPLRASAGTSDSADTAVKPPPENISVGTNGSASAVPVAEEVKVSTGFVDPRWVAGTWDLMQFRKNGTTDWDAVIDAEARRRKWLETNPESSSNDNPVVFDTSIVPWWAWIKRFHLPEAELLNGRAAMIGFFMTYLVDSLTGVGLVDQMNNFFCKTLLFVAVGGVLLIRKNEDVDTFKKLLEETTFYDKQWQATWQDENSSTSKKD*