AlfalfaGEDB | Msa0178020

M. sativa cultivar zhongmu-4 / Msa0178020

KEGG: K02221
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840
PFAM: PF02325.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178020	XP_013469567.1	95.305	213	10	0	1	213	1	213	1.57e-146	416

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178020	sp\|Q8RWM7\|CCB3_ARATH	76.271	118	28	0	94	211	54	171	1.94e-59	187

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178020	A0A072VZW8	95.305	213	10	0	1	213	1	213	7.49e-147	416

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0178020	0.838004	3.719263e-57	-8.615850e-47
Msa0001420	Msa0178020	0.856390	3.322310e-62	-8.615850e-47
Msa0001510	Msa0178020	0.934244	5.451944e-96	-8.615850e-47
Msa0001540	Msa0178020	0.908765	1.195611e-81	-8.615850e-47
Msa0002060	Msa0178020	0.864086	1.565514e-64	-8.615850e-47
Msa0002690	Msa0178020	0.878538	2.589225e-69	-8.615850e-47
Msa0002700	Msa0178020	0.865253	6.750570e-65	-8.615850e-47
Msa0002760	Msa0178020	0.802058	6.718300e-49	-8.615850e-47
Msa0003340	Msa0178020	0.823775	1.155118e-53	-8.615850e-47
Msa0004180	Msa0178020	0.902946	5.756791e-79	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178020	MtrunA17_Chr1g0200991	95.305	213	10	0	1	213	1	213	1.44e-150	416

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178020	AT5G36120.1	76.271	118	28	0	94	211	54	171	1.97e-60	187

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Find 61 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAATGCTGAGAGGA+AGG	0.508019	1_4:-65389241	None:intergenic
AAACACACCACACAGCCGTG+TGG	0.741901	1_4:-65389710	None:intergenic
AAACCAAATGCTGAGAGGAA+GGG	0.610645	1_4:-65389240	None:intergenic
AAAGTGATTCCACCTCTTGC+TGG	0.406086	1_4:+65389372	Msa0178020:CDS
AAATTAGCTATTGGATTTCT+AGG	0.235118	1_4:+65389216	Msa0178020:CDS
AACTTTCCAACTGGAAGTTT+TGG	0.294268	1_4:-65389297	None:intergenic
AAGACAGTAACCAGATAAGG+AGG	0.588124	1_4:-65387641	None:intergenic
AATCTCAACTCCTTCCATGC+GGG	0.548178	1_4:+65387702	Msa0178020:CDS
ACATACGGAAACTTTCCAAC+TGG	0.468445	1_4:-65389306	None:intergenic
ACATCCACACCAGCAAGAGG+TGG	0.639484	1_4:-65389381	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGGTAGAAATGATAAGAA+AGG	-	chr1_4:65387761-65387780	None:intergenic	30.0%
AAAGAGTGAAAGTGAAATGA+AGG	-	chr1_4:65387779-65387798	None:intergenic	30.0%
CATAAATATGATACTGCAAC+TGG	-	chr1_4:65387966-65387985	None:intergenic	30.0%
CAGTTGCAGTATCATATTTA+TGG	+	chr1_4:65387964-65387983	Msa0178020:intron	30.0%
GGATTCATAAAGTTTGATGT+CGG	+	chr1_4:65388078-65388097	Msa0178020:intron	30.0%
CACTTAATTGTAGGTTTCTA+TGG	+	chr1_4:65388117-65388136	Msa0178020:intron	30.0%
CAACTAGTAACAAAAGAGTA+AGG	+	chr1_4:65388216-65388235	Msa0178020:intron	30.0%
CTAGTGTGTTCAAAATTTCA+TGG	+	chr1_4:65388715-65388734	Msa0178020:intron	30.0%
CAATTTATTCCTAATCCTAC+TGG	+	chr1_4:65388795-65388814	Msa0178020:intron	30.0%
TGGAAGAAAATGCATATGTT+TGG	-	chr1_4:65388877-65388896	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	65387598	65389778	65387598	ID=Msa0178020;Name=Msa0178020
chr1_4	mRNA	65387598	65389778	65387598	ID=Msa0178020-mRNA-1;Parent=Msa0178020;Name=Msa0178020-mRNA-1;_AED=0.05;_eAED=0.05;_QI=80\|1\|1\|1\|1\|1\|3\|278\|213
chr1_4	exon	65387598	65387732	65387598	ID=Msa0178020-mRNA-1:exon:21212;Parent=Msa0178020-mRNA-1
chr1_4	exon	65387828	65387877	65387828	ID=Msa0178020-mRNA-1:exon:21213;Parent=Msa0178020-mRNA-1
chr1_4	exon	65388964	65389778	65388964	ID=Msa0178020-mRNA-1:exon:21214;Parent=Msa0178020-mRNA-1
chr1_4	five_prime_UTR	65387598	65387677	65387598	ID=Msa0178020-mRNA-1:five_prime_utr;Parent=Msa0178020-mRNA-1
chr1_4	CDS	65387678	65387732	65387678	ID=Msa0178020-mRNA-1:cds;Parent=Msa0178020-mRNA-1
chr1_4	CDS	65387828	65387877	65387828	ID=Msa0178020-mRNA-1:cds;Parent=Msa0178020-mRNA-1
chr1_4	CDS	65388964	65389500	65388964	ID=Msa0178020-mRNA-1:cds;Parent=Msa0178020-mRNA-1
chr1_4	three_prime_UTR	65389501	65389778	65389501	ID=Msa0178020-mRNA-1:three_prime_utr;Parent=Msa0178020-mRNA-1

Gene Sequence

>Msa0178020

ATGGCGACGCAATCTTATCTTGTTAATCTCAACTCCTTCCATGCGGGAATCACTGGGCGGAATCCTTCAATATTCAAGCCTGCCAATTTTGGCTTTGGCGTCTATAAAAGTTTGAAGCATCCTACTAGAAGAAATGTAAACGGAAGTTCACGAATCATGCAATGTTGTTCATGTTACACGGAAGTTGGAGCTTCTGCCAGCGCAACATTCCCAATATTAAATGGAGCTACTGCACAGAAATGTCTTGATTTGGATGTTGACTTGAATATCTTCAAGCTTAACATGCCAGAAACTTTACATGCTTCCACAGATTTCATGACAGGATTGATGCTTGCTGATATTGATCCTGCTACTGCAAAATTAGCTATTGGATTTCTAGGTCCCTTCCTCTCAGCATTTGGTTTTCTCTTTATCGTGAGAATAGTCATGTCATGGTATCCAAAACTTCCAGTTGGAAAGTTTCCGTATGTAATAGCTTATGCTCCTACTGAACCTCTTCTCGTTCCTACTCGCAAAGTGATTCCACCTCTTGCTGGTGTGGATGTTACTCCTGTGGTTTGGTTTGGACTGCTTAGTTTTCTTAACGAAATATTAGTGGGTCCACAAGGATTACTTGTTCTCCTTTCACAACAAGTCAATTAG

Protein sequence

>Msa0178020

MATQSYLVNLNSFHAGITGRNPSIFKPANFGFGVYKSLKHPTRRNVNGSSRIMQCCSCYTEVGASASATFPILNGATAQKCLDLDVDLNIFKLNMPETLHASTDFMTGLMLADIDPATAKLAIGFLGPFLSAFGFLFIVRIVMSWYPKLPVGKFPYVIAYAPTEPLLVPTRKVIPPLAGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQVN*