AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0085190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085190 MtrunA17_Chr1g0200581 95.283 212 10 0 1 212 1 212 7.67e-134 374
Msa0085190 MtrunA17_Chr7g0271521 50.476 105 52 0 93 197 161 265 9.17e-22 90.5
Msa0085190 MtrunA17_Chr2g0307701 50.476 105 52 0 93 197 71 175 9.60e-22 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085190 AT1G35680.1 50.000 226 90 7 1 209 1 220 1.70e-53 171
Msa0085190 AT4G30930.1 46.429 112 59 1 92 202 140 251 5.91e-22 90.9

Find 71 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATGGACGATATAAATT+TGG 0.192854 1_2:-65167264 Msa0085190:CDS
CATCCGGATAAATAGCATTA+TGG 0.235579 1_2:-65167309 Msa0085190:CDS
ACAGCAGATTCAGTGGATTT+AGG 0.249346 1_2:+65169201 None:intergenic
CTGGAAAATAGCAATGTATT+TGG 0.269474 1_2:+65167076 None:intergenic
TTTATCCGGATGCGTGTATT+TGG 0.270233 1_2:+65167320 None:intergenic
ATATCGTCCATAGTAACTTT+TGG 0.287859 1_2:+65167272 None:intergenic
AAGTTCTCTCTTGTTCAAAA+TGG 0.296593 1_2:-65169391 Msa0085190:exon
GGTTTGTAAGAGTAAATAAA+TGG 0.298935 1_2:-65169458 Msa0085190:five_prime_UTR
CCTTGAATTGAAAGATTTGT+TGG 0.302811 1_2:-65166979 Msa0085190:three_prime_UTR
GTAGGAATTGGAGTGATAAT+TGG 0.305973 1_2:+65167050 None:intergenic
AGTAACAATTCAAAGTAAAT+AGG 0.311756 1_2:+65167018 None:intergenic
CCAACAAATCTTTCAATTCA+AGG 0.333576 1_2:+65166979 None:intergenic
AAGCACTACCGTAGAACTAT+TGG 0.389507 1_2:-65167620 Msa0085190:CDS
AGGCTCTTCATAGTAGGAAT+TGG 0.391862 1_2:+65167038 None:intergenic
AAATTGTTCAGTCTCCTTCA+TGG 0.399185 1_2:-65169131 Msa0085190:CDS
ATCCGGATAAATAGCATTAT+GGG 0.402240 1_2:-65167308 Msa0085190:CDS
GGCCAGGGTGAACAATATAT+TGG 0.416675 1_2:+65168474 None:intergenic
GGACTACCCAAAAGTTACTA+TGG 0.431208 1_2:-65167279 Msa0085190:CDS
ACCACAGCATTTGTTACTAC+TGG 0.436337 1_2:+65167801 None:intergenic
AGAGGATAGAGTTGAGAGAG+AGG 0.436596 1_2:-65169414 Msa0085190:five_prime_UTR
GTAAATAGGCTCTTCATAGT+AGG 0.438916 1_2:+65167032 None:intergenic
GATTCAGTGGATTTAGGAAC+GGG 0.439429 1_2:+65169207 None:intergenic
TACTGGTTTGCCAATGTAGC+AGG 0.447272 1_2:+65167818 None:intergenic
GTAAATAAATGGATAGGAAG+AGG 0.447418 1_2:-65169447 Msa0085190:five_prime_UTR
AGCCCATAATGCTATTTATC+CGG 0.454993 1_2:+65167306 None:intergenic
ATTGTAGATCGCCCTGCATA+AGG 0.455809 1_2:-65167865 Msa0085190:intron
TCAGTCTCCTTCATGGGAGA+AGG 0.458893 1_2:-65169124 Msa0085190:CDS
TGAACAACAAGCCAGCGGCC+AGG 0.470564 1_2:+65168458 None:intergenic
ACAGATACATCCTGCTACAT+TGG 0.471048 1_2:-65167828 Msa0085190:CDS
CTTGTTGTTCAGAGGCTCAA+AGG 0.473982 1_2:-65168446 Msa0085190:CDS
GGAAGAGGAAGAACATAAAG+AGG 0.475604 1_2:-65169432 Msa0085190:five_prime_UTR
ACTTGAGACTCAGACTCAAC+AGG 0.480236 1_2:+65169174 None:intergenic
AATTGTTCAGTCTCCTTCAT+GGG 0.484994 1_2:-65169130 Msa0085190:CDS
GAACAACAAGCCAGCGGCCA+GGG 0.488250 1_2:+65168459 None:intergenic
TTGAGGCTTTGTTGAACAAT+GGG 0.491609 1_2:+65169320 None:intergenic
TTGGAGTGATAATTGGAGAC+TGG 0.496604 1_2:+65167057 None:intergenic
ATATGCGACAGTGGAAGATC+AGG 0.499742 1_2:-65167778 Msa0085190:intron
CAGTCTCCTTCATGGGAGAA+GGG 0.511001 1_2:-65169123 Msa0085190:CDS
CAACCAGTAAAACCTTATGC+AGG 0.515174 1_2:+65167853 None:intergenic
GCCGCTGGCTTGTTGTTCAG+AGG 0.515615 1_2:-65168454 Msa0085190:CDS
TGATGAGAAATAGAGAATTG+AGG 0.517104 1_2:+65169303 None:intergenic
ATATTGTTCACCCTGGCCGC+TGG 0.519617 1_2:-65168469 Msa0085190:CDS
TGGAAAGAGAGGTTGTGAGA+AGG 0.523157 1_2:+65169261 None:intergenic
AAATAGCATTATGGGCTATG+AGG 0.523959 1_2:-65167300 Msa0085190:CDS
TTATTGTATTCAAATACAAA+AGG 0.529558 1_2:-65167646 Msa0085190:CDS
AGGCAAGCGTTGTGAGAAAG+TGG 0.533199 1_2:+65169236 None:intergenic
AAAAGACCCTTCTCCCATGA+AGG 0.536139 1_2:+65169117 None:intergenic
TGTGAAAGAAGAACAGAGAG+TGG 0.542220 1_2:+65169344 None:intergenic
GTCTGTGTCCAATAGTTCTA+CGG 0.543286 1_2:+65167612 None:intergenic
ATTGAGGCTTTGTTGAACAA+TGG 0.545857 1_2:+65169319 None:intergenic
GACAGCCAAATACACGCATC+CGG 0.549802 1_2:-65167325 Msa0085190:intron
TTGTGAGAAGGAACACGAGA+AGG 0.551095 1_2:+65169273 None:intergenic
GTAAGAGTAAATAAATGGAT+AGG 0.553474 1_2:-65169453 Msa0085190:five_prime_UTR
TATTAGCAATCAATTTGCCA+TGG 0.553700 1_2:-65167181 Msa0085190:three_prime_UTR
TAGAACTATTGGACACAGAC+AGG 0.559177 1_2:-65167609 Msa0085190:intron
AGATTCAGTGGATTTAGGAA+CGG 0.565702 1_2:+65169206 None:intergenic
AGCGTTGTGAGAAAGTGGAT+TGG 0.591056 1_2:+65169241 None:intergenic
AGGTGCAACAGCAGATTCAG+TGG 0.593123 1_2:+65169194 None:intergenic
CGCCAATATATTGTTCACCC+TGG 0.594986 1_2:-65168476 Msa0085190:CDS
TGAGTCTGAGTCTCAAGTGT+CGG 0.608217 1_2:-65169169 Msa0085190:CDS
TGTGAGAAGGAACACGAGAA+GGG 0.611777 1_2:+65169274 None:intergenic
ACCAGTAGTAACAAATGCTG+TGG 0.613380 1_2:-65167802 Msa0085190:CDS
AGAAAGTGGATTGGAAAGAG+AGG 0.617691 1_2:+65169250 None:intergenic
AACCAGTAAAACCTTATGCA+GGG 0.620022 1_2:+65167854 None:intergenic
GTATACCTTGTCGTTAACGT+TGG 0.621234 1_2:+65168421 None:intergenic
GAAGGAACACGAGAAGGGAA+AGG 0.624230 1_2:+65169279 None:intergenic
AGGAGACTGAACAATTTGAG+AGG 0.639275 1_2:+65169137 None:intergenic
AGGTGCCAACGTTAACGACA+AGG 0.654570 1_2:-65168426 Msa0085190:intron
GATTTAGGAACGGGTAACAG+AGG 0.658715 1_2:+65169216 None:intergenic
GCCTCTGAACAACAAGCCAG+CGG 0.664752 1_2:+65168453 None:intergenic
TGCTGTGGTATATGCGACAG+TGG 0.682736 1_2:-65167787 Msa0085190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACAATATATTTAAAACTA+TGG - chr1_2:65168155-65168174 Msa0085190:intron 10.0%
!! ACCTATAAATATAATATAAA+AGG - chr1_2:65168312-65168331 Msa0085190:intron 10.0%
!! CCTATAAATATAATATAAAA+GGG - chr1_2:65168313-65168332 Msa0085190:intron 10.0%
!!! AAAAAGTTTTGATAAATAAT+TGG + chr1_2:65168871-65168890 None:intergenic 10.0%
!! ATATAAAATAGATAAAACCA+TGG + chr1_2:65167504-65167523 None:intergenic 15.0%
!!! AATATATTTAAAACTATGGT+TGG - chr1_2:65168159-65168178 Msa0085190:intron 15.0%
!!! CCCTTTTATATTATATTTAT+AGG + chr1_2:65168316-65168335 None:intergenic 15.0%
!! TATAATATAAAAGGGTTTAA+TGG - chr1_2:65168321-65168340 Msa0085190:intron 15.0%
!! AAAGTATATTATAAGAAACT+AGG - chr1_2:65168345-65168364 Msa0085190:intron 15.0%
!!! TGTACATTAATTTTAACTAT+TGG - chr1_2:65168535-65168554 Msa0085190:intron 15.0%
!! TTATTGTATTCAAATACAAA+AGG - chr1_2:65168778-65168797 Msa0085190:intron 15.0%
!! TTTGAACAATTCAAACAAAA+GGG + chr1_2:65167393-65167412 None:intergenic 20.0%
!!! TTTTGAACAATTCAAACAAA+AGG + chr1_2:65167394-65167413 None:intergenic 20.0%
!! AAAAATATGCAAACTCAATT+GGG + chr1_2:65167471-65167490 None:intergenic 20.0%
!!! CATTTATCTGAAATTATTTG+TGG - chr1_2:65167531-65167550 Msa0085190:intron 20.0%
!! TTGTTTGTAATTGTATTGTT+AGG - chr1_2:65167797-65167816 Msa0085190:CDS 20.0%
!!! TAGGTATTTGTTTATTGTTT+TGG - chr1_2:65167847-65167866 Msa0085190:CDS 20.0%
!!! AGGTATTTGTTTATTGTTTT+GGG - chr1_2:65167848-65167867 Msa0085190:CDS 20.0%
!! GCTAATCATTACTTAATAAA+TGG + chr1_2:65168129-65168148 None:intergenic 20.0%
!! ATGAATGAAATTCAAATCAT+TGG - chr1_2:65168406-65168425 Msa0085190:intron 20.0%
!! AACATTCATAAAAAATGACA+TGG + chr1_2:65169037-65169056 None:intergenic 20.0%
!! AGTAACAATTCAAAGTAAAT+AGG + chr1_2:65169409-65169428 None:intergenic 20.0%
! GGTTTGTAAGAGTAAATAAA+TGG - chr1_2:65166966-65166985 Msa0085190:three_prime_UTR 25.0%
! GTAAGAGTAAATAAATGGAT+AGG - chr1_2:65166971-65166990 Msa0085190:three_prime_UTR 25.0%
!!! CTTTTTTTTAATGTTGAGTG+TGG - chr1_2:65167358-65167377 Msa0085190:intron 25.0%
! TGTTAATCTAGATTGTTCTA+TGG - chr1_2:65167435-65167454 Msa0085190:intron 25.0%
! CAAAAATATGCAAACTCAAT+TGG + chr1_2:65167472-65167491 None:intergenic 25.0%
!! CAATTGAGTTTGCATATTTT+TGG - chr1_2:65167470-65167489 Msa0085190:intron 25.0%
! TTAGGAATGGTTAAGTAAAA+TGG - chr1_2:65167576-65167595 Msa0085190:intron 25.0%
! TAGGAATGGTTAAGTAAAAT+GGG - chr1_2:65167577-65167596 Msa0085190:intron 25.0%
! GATAGACTTTACTTATGTTT+CGG + chr1_2:65167649-65167668 None:intergenic 25.0%
!! ATATAGGTTGAAACAATCAT+TGG + chr1_2:65167671-65167690 None:intergenic 25.0%
!!! TCAACCTATATTTTTGAACT+TGG - chr1_2:65167680-65167699 Msa0085190:intron 25.0%
!!! CAACCTATATTTTTGAACTT+GGG - chr1_2:65167681-65167700 Msa0085190:intron 25.0%
!!! GGTATTTGTTTATTGTTTTG+GGG - chr1_2:65167849-65167868 Msa0085190:CDS 25.0%
!!! TTGTGTTGTTTTGTTTAGAT+TGG - chr1_2:65167921-65167940 Msa0085190:intron 25.0%
! GAAATAATGAGTTTAACGAA+TGG + chr1_2:65168052-65168071 None:intergenic 25.0%
!! ATAAATGGTAGCAATTTTAG+AGG + chr1_2:65168114-65168133 None:intergenic 25.0%
!! CTATCATGATGTCAATTTTA+CGG + chr1_2:65168225-65168244 None:intergenic 25.0%
! AAGTGGCAAATTATAATCAT+TGG + chr1_2:65168440-65168459 None:intergenic 25.0%
! AACAGTAAATGTTCAGATAA+TGG + chr1_2:65168490-65168509 None:intergenic 25.0%
!!! TTTTAGCTTTTTTTCCTAAC+AGG + chr1_2:65168700-65168719 None:intergenic 25.0%
! TAAAACAAAATGGTTAAGGT+AGG + chr1_2:65168736-65168755 None:intergenic 25.0%
! GCATTAAAACAAAATGGTTA+AGG + chr1_2:65168740-65168759 None:intergenic 25.0%
!!! TAACCATTTTGTTTTAATGC+AGG - chr1_2:65168740-65168759 Msa0085190:intron 25.0%
!!! AACCATTTTGTTTTAATGCA+GGG - chr1_2:65168741-65168760 Msa0085190:intron 25.0%
! CATTCATCATATATACAACA+TGG + chr1_2:65168990-65169009 None:intergenic 25.0%
! TCAAATCAAACATCAAATTC+TGG + chr1_2:65169067-65169086 None:intergenic 25.0%
! TACTATGGACGATATAAATT+TGG - chr1_2:65169160-65169179 Msa0085190:CDS 25.0%
! GATAAAAACAAAACTAACCA+TGG + chr1_2:65169263-65169282 None:intergenic 25.0%
!!! GGTTAGTTTTGTTTTTATCA+TGG - chr1_2:65169264-65169283 Msa0085190:CDS 25.0%
!!! AGTTTTGTTTTTATCATGGT+TGG - chr1_2:65169268-65169287 Msa0085190:CDS 25.0%
GTAAATAAATGGATAGGAAG+AGG - chr1_2:65166977-65166996 Msa0085190:three_prime_UTR 30.0%
AAGTTCTCTCTTGTTCAAAA+TGG - chr1_2:65167033-65167052 Msa0085190:three_prime_UTR 30.0%
TGATGAGAAATAGAGAATTG+AGG + chr1_2:65167124-65167143 None:intergenic 30.0%
!! TTGTAATGGTGAGTTTTTAG+TGG - chr1_2:65167335-65167354 Msa0085190:intron 30.0%
! TTTTAATGTTGAGTGTGGAT+TGG - chr1_2:65167363-65167382 Msa0085190:intron 30.0%
TTTAATGTTGAGTGTGGATT+GGG - chr1_2:65167364-65167383 Msa0085190:intron 30.0%
AGTATTGCACATTCAAGATT+AGG - chr1_2:65167558-65167577 Msa0085190:intron 30.0%
GAACCCAAGTTCAAAAATAT+AGG + chr1_2:65167687-65167706 None:intergenic 30.0%
TCAATTATAGACGAATCACT+CGG + chr1_2:65167712-65167731 None:intergenic 30.0%
!!! TGTTGTTTTGTTTAGATTGG+TGG - chr1_2:65167924-65167943 Msa0085190:intron 30.0%
!!! AATTTTAGAGGAAGTGCTTA+AGG + chr1_2:65168102-65168121 None:intergenic 30.0%
!! TTTAAAACTATGGTTGGCTT+AGG - chr1_2:65168165-65168184 Msa0085190:intron 30.0%
TATGGTCAAAATACCTCTTT+AGG + chr1_2:65168371-65168390 None:intergenic 30.0%
CATTCATTTCTCACATCATA+TGG + chr1_2:65168389-65168408 None:intergenic 30.0%
AATCGTTTCAAAGAGAAAAG+TGG + chr1_2:65168457-65168476 None:intergenic 30.0%
AACCCTGCATTAAAACAAAA+TGG + chr1_2:65168746-65168765 None:intergenic 30.0%
ATTGGATTGCACAAAGTAAA+AGG + chr1_2:65168853-65168872 None:intergenic 30.0%
TGAAAGGAGCTTAGAAATAT+GGG - chr1_2:65168961-65168980 Msa0085190:intron 30.0%
ATCCGGATAAATAGCATTAT+GGG - chr1_2:65169116-65169135 Msa0085190:CDS 30.0%
! TATCGTCCATAGTAACTTTT+GGG + chr1_2:65169154-65169173 None:intergenic 30.0%
! ATATCGTCCATAGTAACTTT+TGG + chr1_2:65169155-65169174 None:intergenic 30.0%
TATTAGCAATCAATTTGCCA+TGG - chr1_2:65169243-65169262 Msa0085190:CDS 30.0%
CTGGAAAATAGCAATGTATT+TGG + chr1_2:65169351-65169370 None:intergenic 30.0%
CCAACAAATCTTTCAATTCA+AGG + chr1_2:65169448-65169467 None:intergenic 30.0%
CCTTGAATTGAAAGATTTGT+TGG - chr1_2:65169445-65169464 Msa0085190:five_prime_UTR 30.0%
!! TTGAGGCTTTGTTGAACAAT+GGG + chr1_2:65167107-65167126 None:intergenic 35.0%
!! ATTGAGGCTTTGTTGAACAA+TGG + chr1_2:65167108-65167127 None:intergenic 35.0%
! AGATTCAGTGGATTTAGGAA+CGG + chr1_2:65167221-65167240 None:intergenic 35.0%
AAATTGTTCAGTCTCCTTCA+TGG - chr1_2:65167293-65167312 Msa0085190:CDS 35.0%
AATTGTTCAGTCTCCTTCAT+GGG - chr1_2:65167294-65167313 Msa0085190:CDS 35.0%
! CAAAAGTTACATGCTTTGAG+TGG - chr1_2:65167409-65167428 Msa0085190:intron 35.0%
!!! TATTTTTGGCTCTATCACCA+TGG - chr1_2:65167484-65167503 Msa0085190:intron 35.0%
TGCACATTCAAGATTAGGAA+TGG - chr1_2:65167563-65167582 Msa0085190:intron 35.0%
CAATTATAGACGAATCACTC+GGG + chr1_2:65167711-65167730 None:intergenic 35.0%
TCAATCACGTAGCTAGTAAA+AGG - chr1_2:65167751-65167770 Msa0085190:intron 35.0%
CAATCACGTAGCTAGTAAAA+GGG - chr1_2:65167752-65167771 Msa0085190:intron 35.0%
!! AGCTAGTAAAAGGGTTAGTT+TGG - chr1_2:65167761-65167780 Msa0085190:intron 35.0%
!! AGTAAAAGGGTTAGTTTGGA+TGG - chr1_2:65167765-65167784 Msa0085190:intron 35.0%
!! AGTTTGTTGGGTTGGTAAAT+AGG - chr1_2:65167828-65167847 Msa0085190:CDS 35.0%
TGCTTAAGGAGCAAAGAAAA+TGG + chr1_2:65168088-65168107 None:intergenic 35.0%
! CAATTTTACGGAACCAGAAA+GGG + chr1_2:65168213-65168232 None:intergenic 35.0%
! TCAATTTTACGGAACCAGAA+AGG + chr1_2:65168214-65168233 None:intergenic 35.0%
ACTACTAATGACCTGAACTA+TGG - chr1_2:65168283-65168302 Msa0085190:intron 35.0%
CTACTAATGACCTGAACTAT+GGG - chr1_2:65168284-65168303 Msa0085190:intron 35.0%
ATAAGAAACTAGGCCTAAAG+AGG - chr1_2:65168355-65168374 Msa0085190:intron 35.0%
AACCAGTAAAACCTTATGCA+GGG + chr1_2:65168573-65168592 None:intergenic 35.0%
TTACCCTTAGACTTTCTGAA+AGG - chr1_2:65168945-65168964 Msa0085190:intron 35.0%
CTGAAAGGAGCTTAGAAATA+TGG - chr1_2:65168960-65168979 Msa0085190:intron 35.0%
TATGATGAATGTTTGCCTGT+AGG - chr1_2:65168999-65169018 Msa0085190:intron 35.0%
CATCCGGATAAATAGCATTA+TGG - chr1_2:65169115-65169134 Msa0085190:CDS 35.0%
! AGCCCATAATGCTATTTATC+CGG + chr1_2:65169121-65169140 None:intergenic 35.0%
! AAATAGCATTATGGGCTATG+AGG - chr1_2:65169124-65169143 Msa0085190:CDS 35.0%
GTAGGAATTGGAGTGATAAT+TGG + chr1_2:65169377-65169396 None:intergenic 35.0%
GTAAATAGGCTCTTCATAGT+AGG + chr1_2:65169395-65169414 None:intergenic 35.0%
GGAAGAGGAAGAACATAAAG+AGG - chr1_2:65166992-65167011 Msa0085190:three_prime_UTR 40.0%
TGTGAAAGAAGAACAGAGAG+TGG + chr1_2:65167083-65167102 None:intergenic 40.0%
!! AGAAAGTGGATTGGAAAGAG+AGG + chr1_2:65167177-65167196 None:intergenic 40.0%
! GATTCAGTGGATTTAGGAAC+GGG + chr1_2:65167220-65167239 None:intergenic 40.0%
! ACAGCAGATTCAGTGGATTT+AGG + chr1_2:65167226-65167245 None:intergenic 40.0%
AGGAGACTGAACAATTTGAG+AGG + chr1_2:65167290-65167309 None:intergenic 40.0%
!!! GGGTCTTTTTGCTGTTGTAA+TGG - chr1_2:65167321-65167340 Msa0085190:CDS 40.0%
! TTAGGCTACTTCGAGTTTGT+TGG - chr1_2:65167815-65167834 Msa0085190:CDS 40.0%
! TAGGCTACTTCGAGTTTGTT+GGG - chr1_2:65167816-65167835 Msa0085190:CDS 40.0%
GTATACCTTGTCGTTAACGT+TGG + chr1_2:65168006-65168025 None:intergenic 40.0%
AATGACCTGAACTATGGGTT+AGG - chr1_2:65168289-65168308 Msa0085190:intron 40.0%
CAACCAGTAAAACCTTATGC+AGG + chr1_2:65168574-65168593 None:intergenic 40.0%
! CTGCATAAGGTTTTACTGGT+TGG - chr1_2:65168572-65168591 Msa0085190:intron 40.0%
ACAGATACATCCTGCTACAT+TGG - chr1_2:65168596-65168615 Msa0085190:intron 40.0%
ACCAGTAGTAACAAATGCTG+TGG - chr1_2:65168622-65168641 Msa0085190:intron 40.0%
! ACCACAGCATTTGTTACTAC+TGG + chr1_2:65168626-65168645 None:intergenic 40.0%
!! TCTGCTTTTGTTCTCCTGTT+AGG - chr1_2:65168683-65168702 Msa0085190:intron 40.0%
AAGCACTACCGTAGAACTAT+TGG - chr1_2:65168804-65168823 Msa0085190:intron 40.0%
! GTCTGTGTCCAATAGTTCTA+CGG + chr1_2:65168815-65168834 None:intergenic 40.0%
TAGAACTATTGGACACAGAC+AGG - chr1_2:65168815-65168834 Msa0085190:intron 40.0%
GCGATTGAAATGTCTATGTG+TGG - chr1_2:65168891-65168910 Msa0085190:intron 40.0%
TGAAATGTCTATGTGTGGCT+TGG - chr1_2:65168896-65168915 Msa0085190:intron 40.0%
GAAATGTCTATGTGTGGCTT+GGG - chr1_2:65168897-65168916 Msa0085190:intron 40.0%
! TGGCTTGGGAACTAATTCTT+TGG - chr1_2:65168911-65168930 Msa0085190:intron 40.0%
GGCTTGGGAACTAATTCTTT+GGG - chr1_2:65168912-65168931 Msa0085190:intron 40.0%
GCTTGGGAACTAATTCTTTG+GGG - chr1_2:65168913-65168932 Msa0085190:intron 40.0%
GCTCCTTTCAGAAAGTCTAA+GGG + chr1_2:65168951-65168970 None:intergenic 40.0%
AGCTCCTTTCAGAAAGTCTA+AGG + chr1_2:65168952-65168971 None:intergenic 40.0%
TTTATCCGGATGCGTGTATT+TGG + chr1_2:65169107-65169126 None:intergenic 40.0%
GGACTACCCAAAAGTTACTA+TGG - chr1_2:65169145-65169164 Msa0085190:CDS 40.0%
TTGGAGTGATAATTGGAGAC+TGG + chr1_2:65169370-65169389 None:intergenic 40.0%
AGGCTCTTCATAGTAGGAAT+TGG + chr1_2:65169389-65169408 None:intergenic 40.0%
AGAGGATAGAGTTGAGAGAG+AGG - chr1_2:65167010-65167029 Msa0085190:three_prime_UTR 45.0%
TGTGAGAAGGAACACGAGAA+GGG + chr1_2:65167153-65167172 None:intergenic 45.0%
TTGTGAGAAGGAACACGAGA+AGG + chr1_2:65167154-65167173 None:intergenic 45.0%
TGGAAAGAGAGGTTGTGAGA+AGG + chr1_2:65167166-65167185 None:intergenic 45.0%
AGCGTTGTGAGAAAGTGGAT+TGG + chr1_2:65167186-65167205 None:intergenic 45.0%
GATTTAGGAACGGGTAACAG+AGG + chr1_2:65167211-65167230 None:intergenic 45.0%
ACTTGAGACTCAGACTCAAC+AGG + chr1_2:65167253-65167272 None:intergenic 45.0%
TGAGTCTGAGTCTCAAGTGT+CGG - chr1_2:65167255-65167274 Msa0085190:CDS 45.0%
AAAAGACCCTTCTCCCATGA+AGG + chr1_2:65167310-65167329 None:intergenic 45.0%
TATGTTTCGGCCAAACTCCA+GGG + chr1_2:65167636-65167655 None:intergenic 45.0%
TTATGTTTCGGCCAAACTCC+AGG + chr1_2:65167637-65167656 None:intergenic 45.0%
GCTACGTGATTGAGCTTAAG+TGG + chr1_2:65167744-65167763 None:intergenic 45.0%
!! CTACTTCGAGTTTGTTGGGT+TGG - chr1_2:65167820-65167839 Msa0085190:CDS 45.0%
CGCCAATATATTGTTCACCC+TGG - chr1_2:65167948-65167967 Msa0085190:intron 45.0%
GGCCAGGGTGAACAATATAT+TGG + chr1_2:65167953-65167972 None:intergenic 45.0%
!! CTTGTTGTTCAGAGGCTCAA+AGG - chr1_2:65167978-65167997 Msa0085190:intron 45.0%
TAGGTCCTAACCCATAGTTC+AGG + chr1_2:65168297-65168316 None:intergenic 45.0%
ATTGTAGATCGCCCTGCATA+AGG - chr1_2:65168559-65168578 Msa0085190:intron 45.0%
!! TACTGGTTTGCCAATGTAGC+AGG + chr1_2:65168609-65168628 None:intergenic 45.0%
ATATGCGACAGTGGAAGATC+AGG - chr1_2:65168646-65168665 Msa0085190:intron 45.0%
GAAGGAACACGAGAAGGGAA+AGG + chr1_2:65167148-65167167 None:intergenic 50.0%
! AGGCAAGCGTTGTGAGAAAG+TGG + chr1_2:65167191-65167210 None:intergenic 50.0%
AGGTGCAACAGCAGATTCAG+TGG + chr1_2:65167233-65167252 None:intergenic 50.0%
TCAGTCTCCTTCATGGGAGA+AGG - chr1_2:65167300-65167319 Msa0085190:CDS 50.0%
CAGTCTCCTTCATGGGAGAA+GGG - chr1_2:65167301-65167320 Msa0085190:CDS 50.0%
AGGTGCCAACGTTAACGACA+AGG - chr1_2:65167998-65168017 Msa0085190:intron 50.0%
! CGCCCTGCATAAGGTTTTAC+TGG - chr1_2:65168568-65168587 Msa0085190:intron 50.0%
TGCTGTGGTATATGCGACAG+TGG - chr1_2:65168637-65168656 Msa0085190:intron 50.0%
TGTTTGCCTGTAGGCACATG+AGG - chr1_2:65169008-65169027 Msa0085190:intron 50.0%
GACAGCCAAATACACGCATC+CGG - chr1_2:65169099-65169118 Msa0085190:intron 50.0%
TTGTCTTATCCCTCCGACCC+TGG - chr1_2:65167616-65167635 Msa0085190:CDS 55.0%
TTTCGGCCAAACTCCAGGGT+CGG + chr1_2:65167632-65167651 None:intergenic 55.0%
ATATTGTTCACCCTGGCCGC+TGG - chr1_2:65167955-65167974 Msa0085190:intron 55.0%
GCCTCTGAACAACAAGCCAG+CGG + chr1_2:65167974-65167993 None:intergenic 55.0%
AGTGCTTCCTGCTCCCTTTC+TGG - chr1_2:65168197-65168216 Msa0085190:intron 55.0%
TACGGAACCAGAAAGGGAGC+AGG + chr1_2:65168207-65168226 None:intergenic 55.0%
TGGAAGCCTCATGTGCCTAC+AGG + chr1_2:65169017-65169036 None:intergenic 55.0%
ATCCCTCCGACCCTGGAGTT+TGG - chr1_2:65167623-65167642 Msa0085190:CDS 60.0%
GAACAACAAGCCAGCGGCCA+GGG + chr1_2:65167968-65167987 None:intergenic 60.0%
TGAACAACAAGCCAGCGGCC+AGG + chr1_2:65167969-65167988 None:intergenic 60.0%
!! GCCGCTGGCTTGTTGTTCAG+AGG - chr1_2:65167970-65167989 Msa0085190:intron 60.0%
GGCCAAACTCCAGGGTCGGA+GGG + chr1_2:65167628-65167647 None:intergenic 65.0%
CGGCCAAACTCCAGGGTCGG+AGG + chr1_2:65167629-65167648 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 65166963 65169483 65166963 ID=Msa0085190;Name=Msa0085190
chr1_2 mRNA 65166963 65169483 65166963 ID=Msa0085190-mRNA-1;Parent=Msa0085190;Name=Msa0085190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89|1|1|1|1|1|5|290|212
chr1_2 exon 65166963 65167342 65166963 ID=Msa0085190-mRNA-1:exon:22009;Parent=Msa0085190-mRNA-1
chr1_2 exon 65167610 65167684 65167610 ID=Msa0085190-mRNA-1:exon:22008;Parent=Msa0085190-mRNA-1
chr1_2 exon 65167779 65167880 65167779 ID=Msa0085190-mRNA-1:exon:22007;Parent=Msa0085190-mRNA-1
chr1_2 exon 65168427 65168507 65168427 ID=Msa0085190-mRNA-1:exon:22006;Parent=Msa0085190-mRNA-1
chr1_2 exon 65169104 65169483 65169104 ID=Msa0085190-mRNA-1:exon:22005;Parent=Msa0085190-mRNA-1
chr1_2 five_prime_UTR 65169395 65169483 65169395 ID=Msa0085190-mRNA-1:five_prime_utr;Parent=Msa0085190-mRNA-1
chr1_2 CDS 65169104 65169394 65169104 ID=Msa0085190-mRNA-1:cds;Parent=Msa0085190-mRNA-1
chr1_2 CDS 65168427 65168507 65168427 ID=Msa0085190-mRNA-1:cds;Parent=Msa0085190-mRNA-1
chr1_2 CDS 65167779 65167880 65167779 ID=Msa0085190-mRNA-1:cds;Parent=Msa0085190-mRNA-1
chr1_2 CDS 65167610 65167684 65167610 ID=Msa0085190-mRNA-1:cds;Parent=Msa0085190-mRNA-1
chr1_2 CDS 65167253 65167342 65167253 ID=Msa0085190-mRNA-1:cds;Parent=Msa0085190-mRNA-1
chr1_2 three_prime_UTR 65166963 65167252 65166963 ID=Msa0085190-mRNA-1:three_prime_utr;Parent=Msa0085190-mRNA-1
Gene Sequence

>Msa0085190

ATGGCTTCTGCAACTGCTTCTACTCTTTCCACTCTCTGTTCTTCTTTCACAACCCATTGTTCAACAAAGCCTCAATTCTCTATTTCTCATCAACCTTTCCCTTCTCGTGTTCCTTCTCACAACCTCTCTTTCCAATCCACTTTCTCACAACGCTTGCCTCTGTTACCCGTTCCTAAATCCACTGAATCTGCTGTTGCACCTGTTGAGTCTGAGTCTCAAGTGTCGGAGTCTGAATCCTCTCAAATTGTTCAGTCTCCTTCATGGGAGAAGGGTCTTTTTGCTGTTGTAATGATTGGTGGACGCCAATATATTGTTCACCCTGGCCGCTGGCTTGTTGTTCAGAGGCTCAAAGGTGCCAACGTTAACGACAAGATCGCCCTGCATAAGGTTTTACTGGTTGGAACAGATACATCCTGCTACATTGGCAAACCAGTAGTAACAAATGCTGTGGTATATGCGACAGTGGAAGATCAGGGTTTAGACAACAAAGTTATTGTATTCAAATACAAAAGGAAGAAGCACTACCGTAGAACTATTGGACACAGACAGCCAAATACACGCATCCGGATAAATAGCATTATGGGCTATGAGGACTACCCAAAAGTTACTATGGACGATATAAATTTGGAATCATCATGA

Protein sequence

>Msa0085190

MASATASTLSTLCSSFTTHCSTKPQFSISHQPFPSRVPSHNLSFQSTFSQRLPLLPVPKSTESAVAPVESESQVSESESSQIVQSPSWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEDQGLDNKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLESS*