AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1297500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297500 MtrunA17_Chr4g0054701 98.052 154 1 1 1 152 1 154 4.14e-104 294
Msa1297500 MtrunA17_Chr8g0381011 73.451 113 30 0 29 141 2 114 4.27e-56 173
Msa1297500 MtrunA17_Chr8g0381011 49.333 75 37 1 23 97 35 108 4.65e-14 65.9
Msa1297500 MtrunA17_Chr2g0303181 58.621 116 45 1 29 141 2 117 3.40e-46 148
Msa1297500 MtrunA17_Chr4g0047341 56.000 75 33 0 68 142 40 114 3.96e-23 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297500 AT1G32540.3 87.013 154 16 2 1 151 1 153 2.08e-82 239
Msa1297500 AT1G32540.2 87.013 154 16 2 1 151 1 153 2.08e-82 239
Msa1297500 AT1G32540.1 94.215 121 7 0 28 148 64 184 8.21e-80 234
Msa1297500 AT1G32540.5 89.928 139 11 1 1 136 1 139 6.35e-77 226
Msa1297500 AT1G32540.4 91.954 87 4 1 20 103 20 106 2.02e-50 157
Msa1297500 AT1G32540.6 91.954 87 4 1 20 103 20 106 2.02e-50 157
Msa1297500 AT1G32540.7 97.368 76 2 0 28 103 64 139 2.49e-48 153
Msa1297500 AT4G20380.2 60.484 124 38 3 29 141 7 130 2.57e-41 137
Msa1297500 AT4G20380.7 60.484 124 38 3 29 141 7 130 2.57e-41 137
Msa1297500 AT4G20380.6 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1297500 AT4G20380.3 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1297500 AT4G20380.4 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1297500 AT4G20380.1 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1297500 AT4G20380.5 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1297500 AT4G20380.9 60.656 122 37 3 29 139 2 123 7.16e-41 134
Msa1297500 AT4G20380.8 50.667 150 37 3 29 141 2 151 9.68e-38 128
Msa1297500 AT4G20380.8 46.154 78 39 1 70 144 4 81 3.75e-15 69.7
Msa1297500 AT4G21610.1 55.294 85 35 1 67 148 57 141 2.31e-27 100
Msa1297500 AT4G21610.2 60.274 73 29 0 67 139 57 129 3.32e-26 97.1

Find 66 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAATTCTTCATCACTTC+TGG 0.189524 8_3:-57865974 Msa1297500:five_prime_UTR
CCTTTGACTCTCACTTTATC+TGG 0.202596 8_3:-57865898 Msa1297500:five_prime_UTR
AAAGGTCCAAGTACAGTAAA+AGG 0.221457 8_3:-57863823 Msa1297500:three_prime_UTR
TTATTTCTTTCACATACTTT+TGG 0.252427 8_3:-57863861 Msa1297500:three_prime_UTR
TTTGTTCTGTTTGTAGAATT+TGG 0.262955 8_3:-57865732 Msa1297500:five_prime_UTR
TATTGAGTTATGTGTGATAA+AGG 0.287226 8_3:+57866027 None:intergenic
GTACTTAAATATCAATCTTA+AGG 0.309191 8_3:-57864150 Msa1297500:three_prime_UTR
AACGTTTACTCTCATAATAT+TGG 0.313642 8_3:-57866287 None:intergenic
CAGAGTCAACTTGTGTGTTC+TGG 0.355331 8_3:-57865060 Msa1297500:CDS
ATGCTACTTATGTATCAATA+TGG 0.369271 8_3:-57864480 Msa1297500:CDS
TATATCAGTAAGATAACAAC+TGG 0.377081 8_3:-57863781 None:intergenic
AAGTATGTGAAAGAAATAAA+TGG 0.382512 8_3:+57863865 None:intergenic
TTTGTTGGAGGTGTTGTATA+TGG 0.389709 8_3:+57865618 None:intergenic
GTGTATTGTGACAGCAAATC+AGG 0.393093 8_3:-57864532 Msa1297500:intron
GAGAAAAGAAATGGTGGAAA+AGG 0.412620 8_3:+57866153 None:intergenic
ATTGCAAACTGCACATTTCA+CGG 0.413666 8_3:+57864449 None:intergenic
ATTGAGTTATGTGTGATAAA+GGG 0.422105 8_3:+57866028 None:intergenic
GGATAAGGAGCAAGTGGAAC+TGG 0.439901 8_3:+57865669 None:intergenic
AAGGAAACCTTTGAAGCAAA+AGG 0.443679 8_3:+57865852 None:intergenic
CATTACAGACTCTACAACCT+TGG 0.445898 8_3:-57864179 Msa1297500:three_prime_UTR
GCTGGAGGTGGAGTTGGATA+AGG 0.453949 8_3:+57865654 None:intergenic
GCTGGAGCAGGAGCTGGAGG+TGG 0.460297 8_3:+57865642 None:intergenic
CATACAGAAGTGGCTCCAAC+TGG 0.466065 8_3:+57865015 None:intergenic
AAAGTGAAGATACCATTTGT+TGG 0.467296 8_3:+57865603 None:intergenic
GGATGTACATGAGTAAAGTA+TGG 0.469461 8_3:+57864757 None:intergenic
GCAGGAGCTGGAGGTGGAGT+TGG 0.472992 8_3:+57865648 None:intergenic
GTCACAGCAGTGCCACCTCC+TGG 0.473850 8_3:-57864973 Msa1297500:intron
GAAATGGCTCAGTTAGTTTG+TGG 0.475051 8_3:-57864786 Msa1297500:CDS
AAAAGGGTAAAGCAGTCAAA+TGG 0.480658 8_3:-57863806 Msa1297500:three_prime_UTR
TGTATTCACAGGCACAGAAA+TGG 0.480688 8_3:-57864802 Msa1297500:intron
TATGGAGCTGGAGCAGGAGC+TGG 0.484907 8_3:+57865636 None:intergenic
CCAGATAAAGTGAGAGTCAA+AGG 0.509284 8_3:+57865898 None:intergenic
GAGAGAGAGAAAAGAAATGG+TGG 0.510108 8_3:+57866147 None:intergenic
TATACAACACCTCCAACAAA+TGG 0.513032 8_3:-57865615 Msa1297500:intron
GTTGTATATGGAGCTGGAGC+AGG 0.513741 8_3:+57865630 None:intergenic
TCACACAGTCAATCTAGCTC+TGG 0.518089 8_3:-57864703 Msa1297500:CDS
AACCTTCTTATGTATCCAGT+TGG 0.523909 8_3:-57865030 Msa1297500:CDS
GGAGGTGTTGTATATGGAGC+TGG 0.527136 8_3:+57865624 None:intergenic
AAGGTCCAAGTACAGTAAAA+GGG 0.533894 8_3:-57863822 Msa1297500:three_prime_UTR
ATAATAGTATATGATTTATG+AGG 0.535470 8_3:+57864210 None:intergenic
TCTTCCTCCAGCTTCATGCA+TGG 0.537787 8_3:-57865947 Msa1297500:five_prime_UTR
AATACAATCACCGTCACGCA+AGG 0.559660 8_3:+57864068 None:intergenic
TTTGCTAGAAAAGAAAATGA+AGG 0.559817 8_3:-57866257 Msa1297500:five_prime_UTR
ATTTACCTTACCAAAAGATG+TGG 0.560547 8_3:+57863963 None:intergenic
GTGAAGATACCATTTGTTGG+AGG 0.564232 8_3:+57865606 None:intergenic
CTCCAACTGGATACATAAGA+AGG 0.572621 8_3:+57865028 None:intergenic
AAACCTTTGAAGCAAAAGGT+TGG 0.575078 8_3:+57865856 None:intergenic
TGAAAGAAATAAATGGTGCT+TGG 0.582348 8_3:+57863872 None:intergenic
CTGCTCCGTCGTGCTTGCTG+AGG 0.583212 8_3:+57864246 None:intergenic
GGAGTTGGATAAGGAGCAAG+TGG 0.592607 8_3:+57865663 None:intergenic
TATTTCATCATACCAGGAGG+TGG 0.599736 8_3:+57864961 None:intergenic
AACAGCACAGCATACAGAAG+TGG 0.604154 8_3:+57865005 None:intergenic
GGAGCTGGAGCAGGAGCTGG+AGG 0.618511 8_3:+57865639 None:intergenic
ATGGCTCAGTTAGTTTGTGG+AGG 0.620989 8_3:-57864783 Msa1297500:CDS
ATACAATCACCGTCACGCAA+GGG 0.630625 8_3:+57864069 None:intergenic
ACAGTCAATCTAGCTCTGGA+AGG 0.636792 8_3:-57864699 Msa1297500:intron
ATGTCAACTGTGGTAACTGC+AGG 0.637282 8_3:-57864503 Msa1297500:CDS
AAAATAACTCTATACATGTG+AGG 0.644150 8_3:+57864093 None:intergenic
AATCATATACTATTATAGCA+AGG 0.645071 8_3:-57864203 Msa1297500:three_prime_UTR
AAAACCATGCATGAAGCTGG+AGG 0.646121 8_3:+57865943 None:intergenic
AACTATACTGACCCCAACTG+AGG 0.675495 8_3:+57864419 None:intergenic
GCAGGCCTCAGCAAGCACGA+CGG 0.676096 8_3:-57864251 Msa1297500:intron
ATTGAACACTCGTCGCTCCG+CGG 0.692743 8_3:+57864736 None:intergenic
CAGGTAGCACATGTCAACTG+TGG 0.705529 8_3:-57864513 Msa1297500:CDS
ACTTTACTCATGTACATCCG+CGG 0.709515 8_3:-57864753 Msa1297500:CDS
ATGGTGGAAAAGGATATGAG+TGG 0.731997 8_3:+57866163 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATACAAAATTTACTAAA+TGG - chr8_3:57864681-57864700 Msa1297500:intron 10.0%
!!! ATATAATTTTACTTGTACAA+TGG + chr8_3:57863990-57864009 None:intergenic 15.0%
!! ATAATAGTATATGATTTATG+AGG + chr8_3:57865860-57865879 None:intergenic 15.0%
!!! TCTTATTTCTTATCCATATT+TGG - chr8_3:57864583-57864602 Msa1297500:intron 20.0%
!!! ATGTCTAATTTTAGTATTGA+TGG - chr8_3:57864629-57864648 Msa1297500:intron 20.0%
!! ATTCTTAAAACTACAAAGTA+CGG + chr8_3:57865510-57865529 None:intergenic 20.0%
!! AATCATATACTATTATAGCA+AGG - chr8_3:57865864-57865883 Msa1297500:five_prime_UTR 20.0%
!! GTACTTAAATATCAATCTTA+AGG - chr8_3:57865917-57865936 Msa1297500:five_prime_UTR 20.0%
!! AAGTATGTGAAAGAAATAAA+TGG + chr8_3:57866205-57866224 None:intergenic 20.0%
!!! TTATTTCTTTCACATACTTT+TGG - chr8_3:57866206-57866225 Msa1297500:five_prime_UTR 20.0%
!!! TCATTTTCTTTTCTAGCAAA+TGG + chr8_3:57863810-57863829 None:intergenic 25.0%
! TTTGCTAGAAAAGAAAATGA+AGG - chr8_3:57863810-57863829 Msa1297500:three_prime_UTR 25.0%
!!! AGTTTGCTAGAATGAAAAAA+GGG + chr8_3:57863947-57863966 None:intergenic 25.0%
!!! TAGTTTGCTAGAATGAAAAA+AGG + chr8_3:57863948-57863967 None:intergenic 25.0%
! ATTGAGTTATGTGTGATAAA+GGG + chr8_3:57864042-57864061 None:intergenic 25.0%
! TATTGAGTTATGTGTGATAA+AGG + chr8_3:57864043-57864062 None:intergenic 25.0%
!!! ATGCATGGTTTTTTATTTCA+AGG - chr8_3:57864135-57864154 Msa1297500:three_prime_UTR 25.0%
!! AAAAAAGTGATTAACTTGGT+AGG + chr8_3:57864246-57864265 None:intergenic 25.0%
! GGAAAAAAAAGTGATTAACT+TGG + chr8_3:57864250-57864269 None:intergenic 25.0%
! AGTAAAAGATTCATTCAAGA+GGG + chr8_3:57864271-57864290 None:intergenic 25.0%
! TAGTAAAAGATTCATTCAAG+AGG + chr8_3:57864272-57864291 None:intergenic 25.0%
!! ACTATATTTCTTCATTTTCC+AGG - chr8_3:57864288-57864307 Msa1297500:intron 25.0%
! TTTGTTCTGTTTGTAGAATT+TGG - chr8_3:57864335-57864354 Msa1297500:intron 25.0%
!!! TTGATGCATGTTCTTTATTT+TGG - chr8_3:57864514-57864533 Msa1297500:CDS 25.0%
! ACAAAATTTACTAAATGGAG+AGG - chr8_3:57864686-57864705 Msa1297500:intron 25.0%
! TCCAATTTCTTATCAGATAA+AGG - chr8_3:57864720-57864739 Msa1297500:CDS 25.0%
! CCAATTTCTTATCAGATAAA+GGG - chr8_3:57864721-57864740 Msa1297500:CDS 25.0%
!! GCTTTTTGTTAAAATCACAT+AGG + chr8_3:57864863-57864882 None:intergenic 25.0%
!! AAAAATGTTGTTTGAATGCT+AGG - chr8_3:57864980-57864999 Msa1297500:CDS 25.0%
! GTTCAATTGACTAATAAATG+TGG + chr8_3:57865218-57865237 None:intergenic 25.0%
!! ATGCTACTTATGTATCAATA+TGG - chr8_3:57865587-57865606 Msa1297500:intron 25.0%
! TCAAAATAGAAAAGAGGAAA+AGG + chr8_3:57865689-57865708 None:intergenic 25.0%
! TTCTCTTCAAAATAGAAAAG+AGG + chr8_3:57865695-57865714 None:intergenic 25.0%
! TATTTAAGTACCAAAAACCA+AGG + chr8_3:57865908-57865927 None:intergenic 25.0%
! AAAATAACTCTATACATGTG+AGG + chr8_3:57865977-57865996 None:intergenic 25.0%
!!! TTAAGCGTTTTTGTTTGAAT+TGG - chr8_3:57866020-57866039 Msa1297500:five_prime_UTR 25.0%
!!! TTCTACTTTTGTTCAATAAG+TGG - chr8_3:57866133-57866152 Msa1297500:five_prime_UTR 25.0%
GGATGTACACTAAAAAGAAA+TGG + chr8_3:57863886-57863905 None:intergenic 30.0%
CTTAAATTCTTCATCACTTC+TGG - chr8_3:57864093-57864112 Msa1297500:three_prime_UTR 30.0%
!!! CATGGTTTTTTATTTCAAGG+AGG - chr8_3:57864138-57864157 Msa1297500:three_prime_UTR 30.0%
! ATTAACTTGGTAGGTTGAAA+AGG + chr8_3:57864237-57864256 None:intergenic 30.0%
! TTTTCCAGGAGTTGAAAAAA+TGG - chr8_3:57864302-57864321 Msa1297500:intron 30.0%
TTTCCAGGAGTTGAAAAAAT+GGG - chr8_3:57864303-57864322 Msa1297500:intron 30.0%
AAAGTGAAGATACCATTTGT+TGG + chr8_3:57864467-57864486 None:intergenic 30.0%
ATAAAGAACATGCATCAATG+AGG + chr8_3:57864512-57864531 None:intergenic 30.0%
TACTTTATGCTGATGAATTG+TGG - chr8_3:57864546-57864565 Msa1297500:intron 30.0%
TCTTATCCATATTTGGAAGA+AGG - chr8_3:57864590-57864609 Msa1297500:intron 30.0%
TTTAGTCCTTCTTCCAAATA+TGG + chr8_3:57864599-57864618 None:intergenic 30.0%
CCCTTTATCTGATAAGAAAT+TGG + chr8_3:57864724-57864743 None:intergenic 30.0%
TCTAAACATGCACTAAAGAT+AGG + chr8_3:57864809-57864828 None:intergenic 30.0%
CCATACCATAAAACATTAAG+TGG + chr8_3:57864917-57864936 None:intergenic 30.0%
! CCACTTAATGTTTTATGGTA+TGG - chr8_3:57864914-57864933 Msa1297500:intron 30.0%
! TGTTTTATGGTATGGAAATG+TGG - chr8_3:57864922-57864941 Msa1297500:intron 30.0%
GAAGAATATTTCATCATACC+AGG + chr8_3:57865115-57865134 None:intergenic 30.0%
AGAGACCTAATAACTGATAA+GGG + chr8_3:57865138-57865157 None:intergenic 30.0%
TAGAGACCTAATAACTGATA+AGG + chr8_3:57865139-57865158 None:intergenic 30.0%
ATATCAGAAACTGAAGATTC+AGG + chr8_3:57865192-57865211 None:intergenic 30.0%
!! ATAAGCATTGATGTATTCAC+AGG - chr8_3:57865254-57865273 Msa1297500:intron 30.0%
!!! AAACTATGTCTTGTTTTGCA+AGG + chr8_3:57865739-57865758 None:intergenic 30.0%
! TATGCAAAAACCACATCTTT+TGG - chr8_3:57866094-57866113 Msa1297500:five_prime_UTR 30.0%
! AAAAACCACATCTTTTGGTA+AGG - chr8_3:57866099-57866118 Msa1297500:five_prime_UTR 30.0%
ATTTACCTTACCAAAAGATG+TGG + chr8_3:57866107-57866126 None:intergenic 30.0%
TGAAAGAAATAAATGGTGCT+TGG + chr8_3:57866198-57866217 None:intergenic 30.0%
! GAGAAAAGAAATGGTGGAAA+AGG + chr8_3:57863917-57863936 None:intergenic 35.0%
TAAAAAACCATGCATGAAGC+TGG + chr8_3:57864130-57864149 None:intergenic 35.0%
!! AAACCTTTGAAGCAAAAGGT+TGG + chr8_3:57864214-57864233 None:intergenic 35.0%
!! AAGGAAACCTTTGAAGCAAA+AGG + chr8_3:57864218-57864237 None:intergenic 35.0%
!! TTTGTTGGAGGTGTTGTATA+TGG + chr8_3:57864452-57864471 None:intergenic 35.0%
TATACAACACCTCCAACAAA+TGG - chr8_3:57864452-57864471 Msa1297500:CDS 35.0%
TTATGCTGATGAATTGTGGT+TGG - chr8_3:57864550-57864569 Msa1297500:intron 35.0%
TCAGATAAAGGGAGATATGT+TGG - chr8_3:57864732-57864751 Msa1297500:CDS 35.0%
!!! CAGTGCCACTTAATGTTTTA+TGG - chr8_3:57864909-57864928 Msa1297500:intron 35.0%
AACCTTCTTATGTATCCAGT+TGG - chr8_3:57865037-57865056 Msa1297500:CDS 35.0%
GAATATTTCATCATACCAGG+AGG + chr8_3:57865112-57865131 None:intergenic 35.0%
TCTTCCCCTTATCAGTTATT+AGG - chr8_3:57865130-57865149 Msa1297500:intron 35.0%
GAGACCTAATAACTGATAAG+GGG + chr8_3:57865137-57865156 None:intergenic 35.0%
GGATGTACATGAGTAAAGTA+TGG + chr8_3:57865313-57865332 None:intergenic 35.0%
CGAGTTAAATTGCTGTGATT+CGG - chr8_3:57865481-57865500 Msa1297500:intron 35.0%
ATTGCAAACTGCACATTTCA+CGG + chr8_3:57865621-57865640 None:intergenic 35.0%
! TGCAATTTTGTTACCTCAGT+TGG - chr8_3:57865635-57865654 Msa1297500:CDS 35.0%
! GCAATTTTGTTACCTCAGTT+GGG - chr8_3:57865636-57865655 Msa1297500:CDS 35.0%
! CAATTTTGTTACCTCAGTTG+GGG - chr8_3:57865637-57865656 Msa1297500:CDS 35.0%
GAAAAGAGGAAAAGGTAGTA+TGG + chr8_3:57865681-57865700 None:intergenic 35.0%
! ATGTTACTGAATGATGATGC+AGG - chr8_3:57865798-57865817 Msa1297500:intron 35.0%
!! CTGCTATATTTTTGTGTGTG+TGG - chr8_3:57866168-57866187 Msa1297500:five_prime_UTR 35.0%
!! TTCACATACTTTTGGCCTTT+TGG - chr8_3:57866214-57866233 Msa1297500:five_prime_UTR 35.0%
!! TGGCCTTTTGGAAATAGAAA+AGG - chr8_3:57866226-57866245 Msa1297500:five_prime_UTR 35.0%
! GGACCTTTTCTATTTCCAAA+AGG + chr8_3:57866232-57866251 None:intergenic 35.0%
AAAGGTCCAAGTACAGTAAA+AGG - chr8_3:57866244-57866263 Msa1297500:five_prime_UTR 35.0%
AAGGTCCAAGTACAGTAAAA+GGG - chr8_3:57866245-57866264 Msa1297500:five_prime_UTR 35.0%
! CTTTACCCTTTTACTGTACT+TGG + chr8_3:57866253-57866272 None:intergenic 35.0%
AAAAGGGTAAAGCAGTCAAA+TGG - chr8_3:57866261-57866280 Msa1297500:five_prime_UTR 35.0%
! ATGGTGGAAAAGGATATGAG+TGG + chr8_3:57863907-57863926 None:intergenic 40.0%
GAGAGAGAGAAAAGAAATGG+TGG + chr8_3:57863923-57863942 None:intergenic 40.0%
GGAGAGAGAGAGAAAAGAAA+TGG + chr8_3:57863926-57863945 None:intergenic 40.0%
CCAGATAAAGTGAGAGTCAA+AGG + chr8_3:57864172-57864191 None:intergenic 40.0%
CCTTTGACTCTCACTTTATC+TGG - chr8_3:57864169-57864188 Msa1297500:three_prime_UTR 40.0%
! CTACCAACCTTTTGCTTCAA+AGG - chr8_3:57864208-57864227 Msa1297500:exon 40.0%
! GTGAAGATACCATTTGTTGG+AGG + chr8_3:57864464-57864483 None:intergenic 40.0%
GGTTCAAATCTGAGTCTTAG+AGG + chr8_3:57864788-57864807 None:intergenic 40.0%
! ACAGTGAGTTTTGCGAAATC+AGG - chr8_3:57864832-57864851 Msa1297500:intron 40.0%
! CAGTGAGTTTTGCGAAATCA+GGG - chr8_3:57864833-57864852 Msa1297500:intron 40.0%
CTCCAACTGGATACATAAGA+AGG + chr8_3:57865042-57865061 None:intergenic 40.0%
TATTTCATCATACCAGGAGG+TGG + chr8_3:57865109-57865128 None:intergenic 40.0%
TGTATTCACAGGCACAGAAA+TGG - chr8_3:57865265-57865284 Msa1297500:intron 40.0%
! GAAATGGCTCAGTTAGTTTG+TGG - chr8_3:57865281-57865300 Msa1297500:intron 40.0%
ACTTTACTCATGTACATCCG+CGG - chr8_3:57865314-57865333 Msa1297500:intron 40.0%
GTGTATTGTGACAGCAAATC+AGG - chr8_3:57865535-57865554 Msa1297500:intron 40.0%
CATTACAGACTCTACAACCT+TGG - chr8_3:57865888-57865907 Msa1297500:five_prime_UTR 40.0%
!! GACTCTACAACCTTGGTTTT+TGG - chr8_3:57865895-57865914 Msa1297500:five_prime_UTR 40.0%
!!! GTTATTTTTCCCTTGCGTGA+CGG - chr8_3:57865989-57866008 Msa1297500:five_prime_UTR 40.0%
AAAACCATGCATGAAGCTGG+AGG + chr8_3:57864127-57864146 None:intergenic 45.0%
!!! CCACCCATTTTTTCAACTCC+TGG + chr8_3:57864309-57864328 None:intergenic 45.0%
CCAGGAGTTGAAAAAATGGG+TGG - chr8_3:57864306-57864325 Msa1297500:intron 45.0%
CAGAGTCAACTTGTGTGTTC+TGG - chr8_3:57865007-57865026 Msa1297500:CDS 45.0%
AACAGCACAGCATACAGAAG+TGG + chr8_3:57865065-57865084 None:intergenic 45.0%
!! ATGGCTCAGTTAGTTTGTGG+AGG - chr8_3:57865284-57865303 Msa1297500:intron 45.0%
! TCACACAGTCAATCTAGCTC+TGG - chr8_3:57865364-57865383 Msa1297500:intron 45.0%
!! ACAGTCAATCTAGCTCTGGA+AGG - chr8_3:57865368-57865387 Msa1297500:intron 45.0%
ATGTCAACTGTGGTAACTGC+AGG - chr8_3:57865564-57865583 Msa1297500:intron 45.0%
AACTATACTGACCCCAACTG+AGG + chr8_3:57865651-57865670 None:intergenic 45.0%
ATACAATCACCGTCACGCAA+GGG + chr8_3:57866001-57866020 None:intergenic 45.0%
AATACAATCACCGTCACGCA+AGG + chr8_3:57866002-57866021 None:intergenic 45.0%
TCTTCCTCCAGCTTCATGCA+TGG - chr8_3:57864120-57864139 Msa1297500:three_prime_UTR 50.0%
GGATAAGGAGCAAGTGGAAC+TGG + chr8_3:57864401-57864420 None:intergenic 50.0%
GGAGTTGGATAAGGAGCAAG+TGG + chr8_3:57864407-57864426 None:intergenic 50.0%
GTTGTATATGGAGCTGGAGC+AGG + chr8_3:57864440-57864459 None:intergenic 50.0%
!! GGAGGTGTTGTATATGGAGC+TGG + chr8_3:57864446-57864465 None:intergenic 50.0%
CATACAGAAGTGGCTCCAAC+TGG + chr8_3:57865055-57865074 None:intergenic 50.0%
CAGGTAGCACATGTCAACTG+TGG - chr8_3:57865554-57865573 Msa1297500:intron 50.0%
GCTGGAGGTGGAGTTGGATA+AGG + chr8_3:57864416-57864435 None:intergenic 55.0%
ATTGAACACTCGTCGCTCCG+CGG + chr8_3:57865334-57865353 None:intergenic 55.0%
TATGGAGCTGGAGCAGGAGC+TGG + chr8_3:57864434-57864453 None:intergenic 60.0%
GCAGGAGCTGGAGGTGGAGT+TGG + chr8_3:57864422-57864441 None:intergenic 65.0%
GTCACAGCAGTGCCACCTCC+TGG - chr8_3:57865094-57865113 Msa1297500:intron 65.0%
GCAGGCCTCAGCAAGCACGA+CGG - chr8_3:57865816-57865835 Msa1297500:intron 65.0%
! CTGCTCCGTCGTGCTTGCTG+AGG + chr8_3:57865824-57865843 None:intergenic 65.0%
GCTGGAGCAGGAGCTGGAGG+TGG + chr8_3:57864428-57864447 None:intergenic 70.0%
GGAGCTGGAGCAGGAGCTGG+AGG + chr8_3:57864431-57864450 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 57863784 57866305 57863784 ID=Msa1297500;Name=Msa1297500
chr8_3 mRNA 57863784 57866305 57863784 ID=Msa1297500-mRNA-1;Parent=Msa1297500;Name=Msa1297500-mRNA-1;_AED=0.08;_eAED=0.08;_QI=531|1|1|1|0.8|0.66|6|441|153
chr8_3 exon 57863784 57864269 57863784 ID=Msa1297500-mRNA-1:exon:16570;Parent=Msa1297500-mRNA-1
chr8_3 exon 57864431 57864540 57864431 ID=Msa1297500-mRNA-1:exon:16569;Parent=Msa1297500-mRNA-1
chr8_3 exon 57864700 57864813 57864700 ID=Msa1297500-mRNA-1:exon:16568;Parent=Msa1297500-mRNA-1
chr8_3 exon 57864974 57865087 57864974 ID=Msa1297500-mRNA-1:exon:16567;Parent=Msa1297500-mRNA-1
chr8_3 exon 57865616 57865779 57865616 ID=Msa1297500-mRNA-1:exon:16566;Parent=Msa1297500-mRNA-1
chr8_3 exon 57865860 57866305 57865860 ID=Msa1297500-mRNA-1:exon:16565;Parent=Msa1297500-mRNA-1
chr8_3 five_prime_UTR 57865860 57866305 57865860 ID=Msa1297500-mRNA-1:five_prime_utr;Parent=Msa1297500-mRNA-1
chr8_3 five_prime_UTR 57865695 57865779 57865695 ID=Msa1297500-mRNA-1:five_prime_utr;Parent=Msa1297500-mRNA-1
chr8_3 CDS 57865616 57865694 57865616 ID=Msa1297500-mRNA-1:cds;Parent=Msa1297500-mRNA-1
chr8_3 CDS 57864974 57865087 57864974 ID=Msa1297500-mRNA-1:cds;Parent=Msa1297500-mRNA-1
chr8_3 CDS 57864700 57864813 57864700 ID=Msa1297500-mRNA-1:cds;Parent=Msa1297500-mRNA-1
chr8_3 CDS 57864431 57864540 57864431 ID=Msa1297500-mRNA-1:cds;Parent=Msa1297500-mRNA-1
chr8_3 CDS 57864225 57864269 57864225 ID=Msa1297500-mRNA-1:cds;Parent=Msa1297500-mRNA-1
chr8_3 three_prime_UTR 57863784 57864224 57863784 ID=Msa1297500-mRNA-1:three_prime_utr;Parent=Msa1297500-mRNA-1
Gene Sequence

>Msa1297500

ATGCCAGTTCCACTTGCTCCTTATCCAACTCCACCTCCAGCTCCTGCTCCAGCTCCATATACAACACCTCCAACAAATGGTGCACAGAGTCAACTTGTGTGTTCTGGTTGTAGAAACCTTCTTATGTATCCAGTTGGAGCCACTTCTGTATGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGATGCCATACTTTACTCATGTACATCCGCGGAGCGACGAGTGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTCTGGAAGCAAATCAGGTAGCACATGTCAACTGTGGTAACTGCAGGATGCTACTTATGTATCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTTACCTCAGTTGGGGCCTCAGCAAGCACGACGGAGCAGCAGAAGTTCAGCACCTCATAA

Protein sequence

>Msa1297500

MPVPLAPYPTPPPAPAPAPYTTPPTNGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQQKFSTS*