AlfalfaGEDB | Msa0502010

M. sativa cultivar zhongmu-4 / Msa0502010

KEGG: -
GO: GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01151.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502010	XP_003626313.1	96.350	274	9	1	1	273	1	274	0.0	527

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502010	sp\|Q9SYY4\|ELO3L_ARATH	28.041	296	183	8	1	273	1	289	1.38e-29	116

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502010	Q2HTN1	96.350	274	9	1	1	273	1	274	0.0	527

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0075080	Msa0502010	0.800522	1.385388e-48	-8.615850e-47
Msa0380390	Msa0502010	0.805387	1.367848e-49	-8.615850e-47
Msa0409070	Msa0502010	0.877822	4.615230e-69	-8.615850e-47
Msa0453830	Msa0502010	0.816672	4.900785e-52	-8.615850e-47
Msa0256590	Msa0502010	0.810725	9.992525e-51	-8.615850e-47
Msa0291490	Msa0502010	0.817287	3.565156e-52	-8.615850e-47
Msa0361540	Msa0502010	0.854470	1.204984e-61	-8.615850e-47
Msa0502010	Msa1079720	0.834088	3.668658e-56	-8.615850e-47
Msa0502010	Msa1168050	0.816587	5.122224e-52	-8.615850e-47
Msa0502010	Msa1206500	0.805544	1.268501e-49	-8.615850e-47
Msa0502010	Msa1252210	0.807190	5.705695e-50	-8.615850e-47
Msa0502010	Msa1267560	0.803444	3.475830e-49	-8.615850e-47
Msa0502010	Msa1298180	0.810950	8.930718e-51	-8.615850e-47
Msa0502010	Msa1375120	0.803578	3.261388e-49	-8.615850e-47
Msa0502010	Msa1376560	0.810983	8.786062e-51	-8.615850e-47
Msa0502010	Msa1376680	0.819380	1.197287e-52	-8.615850e-47
Msa0502010	Msa1455560	0.816049	6.756325e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502010	MtrunA17_Chr7g0273031	96.350	274	9	1	1	273	1	274	0.0	527
Msa0502010	MtrunA17_Chr8g0373641	33.929	280	168	3	9	273	16	293	2.28e-42	147
Msa0502010	MtrunA17_Chr3g0141331	33.216	283	164	5	9	273	15	290	6.31e-41	143
Msa0502010	MtrunA17_Chr5g0403531	33.446	296	160	8	1	272	1	283	2.44e-38	136
Msa0502010	MtrunA17_Chr1g0154571	26.829	287	148	7	4	270	4	248	2.31e-18	82.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0502010	AT3G06470.1	57.664	274	103	5	9	272	8	278	2.96e-101	297
Msa0502010	AT3G06460.1	52.107	261	116	5	9	262	8	266	6.14e-86	259
Msa0502010	AT1G75000.1	30.717	293	153	6	10	269	5	280	7.27e-37	132
Msa0502010	AT4G36830.1	28.041	296	183	8	1	273	1	289	1.40e-30	116
Msa0502010	AT4G36830.2	29.057	265	160	7	1	244	1	258	2.26e-25	102

Find 98 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCGGTGGTGGTGGATGCTC+TGG	0.244745	3_4:+43995807	Msa0502010:CDS
CTCCATCCTCTCCCTCATTA+TGG	0.310997	3_4:+43995353	Msa0502010:CDS
GAGAGTGAGGGAGAGATAAA+AGG	0.313559	3_4:-43995256	None:intergenic
CATGTGAAATTTAGAATGTT+TGG	0.317423	3_4:-43995180	None:intergenic
CTCTCCCTCATTATGGCTAT+TGG	0.337974	3_4:+43995360	Msa0502010:CDS
GGATAGGTGGGAGAGGGAAG+AGG	0.353829	3_4:-43995284	None:intergenic
TCCCAATCATGTGTTATCTA+TGG	0.356723	3_4:+43995589	Msa0502010:CDS
ATGTTGAAGGATTCTGCTAA+TGG	0.366775	3_4:-43995142	None:intergenic
GGATGGAGAGGATGAGGTTG+TGG	0.388690	3_4:-43995338	None:intergenic
TGTTGAAGGATTCTGCTAAT+GGG	0.389451	3_4:-43995141	None:intergenic
GTGGGAGAGGGAAGAGGAGA+AGG	0.389465	3_4:-43995278	None:intergenic
GGAGGTTAGGAGTGTGGGTT+AGG	0.392757	3_4:-43995398	None:intergenic
GAGTTGGTAAGAAGTGCAAT+AGG	0.397860	3_4:-43995636	None:intergenic
CTTTATTATCACTTCGGATC+CGG	0.398177	3_4:+43995789	Msa0502010:CDS
TGGTGGATGCTCTGGGATGA+AGG	0.407237	3_4:+43995815	Msa0502010:CDS
CAGATGGTGGAGCGGAGGTT+AGG	0.414087	3_4:-43995411	None:intergenic
GTTAGGAGTGTGGGTTAGGA+TGG	0.422091	3_4:-43995394	None:intergenic
GAGGAATGAGAGACGTTTGA+TGG	0.423143	3_4:-43995544	None:intergenic
GAGGTTGTGGAGTGCGGTGA+AGG	0.426675	3_4:-43995325	None:intergenic
GGAAGTGAGGTGGGATAGGT+GGG	0.431318	3_4:-43995296	None:intergenic
GATGCTCTGGGATGAAGGCT+TGG	0.437263	3_4:+43995820	Msa0502010:CDS
AGCCATAGATAACACATGAT+TGG	0.439169	3_4:-43995591	None:intergenic
AGGAAGTGAGGTGGGATAGG+TGG	0.440874	3_4:-43995297	None:intergenic
GTGTTCAGCTTCGCCGTCTC+CGG	0.442875	3_4:+43995759	Msa0502010:CDS
GGAAGAGGAGAAGGAGAGTG+AGG	0.444740	3_4:-43995269	None:intergenic
CACTTCGGATCCGGTGGTGG+TGG	0.447681	3_4:+43995798	Msa0502010:CDS
TTGAGGAAGTGAGGTGGGAT+AGG	0.449819	3_4:-43995300	None:intergenic
GGGAGAGGATGGAGAGGATG+AGG	0.450488	3_4:-43995344	None:intergenic
GGACCATTTGGAGGGGTATG+AGG	0.451616	3_4:-43995441	None:intergenic
GCCATAGATAACACATGATT+GGG	0.452793	3_4:-43995590	None:intergenic
TTAGCAGAATCCTTCAACAT+TGG	0.455085	3_4:+43995145	Msa0502010:CDS
TGGAAAGAGAGAGGAACAAA+AGG	0.460332	3_4:-43995230	None:intergenic
CCGGTGGTGGTGGATGCTCT+GGG	0.474001	3_4:+43995808	Msa0502010:CDS
CCATTTGGAGGGGTATGAGG+AGG	0.474427	3_4:-43995438	None:intergenic
TGAACACGAACTGAACAATC+TGG	0.475700	3_4:-43995743	None:intergenic
TACTACTTCCTCACCACTGT+TGG	0.476064	3_4:+43995684	Msa0502010:CDS
TGGAGCGGAGGTTAGGAGTG+TGG	0.479715	3_4:-43995404	None:intergenic
CTCATGCTTTATTATCACTT+CGG	0.480515	3_4:+43995783	Msa0502010:CDS
GTGGGTTAGGATGGTGAGGG+AGG	0.481729	3_4:-43995385	None:intergenic
GGAGCGGAGGTTAGGAGTGT+GGG	0.485741	3_4:-43995403	None:intergenic
AGTTGGTAAGAAGTGCAATA+GGG	0.487218	3_4:-43995635	None:intergenic
TATCACTTCGGATCCGGTGG+TGG	0.497768	3_4:+43995795	Msa0502010:CDS
AGGAACAAAAGGGATGAGGC+TGG	0.499237	3_4:-43995219	None:intergenic
GAGGTGGGATAGGTGGGAGA+GGG	0.500599	3_4:-43995290	None:intergenic
GATGAGGCTGGAGTGTGAGG+AGG	0.502414	3_4:-43995207	None:intergenic
TGAGGTGGGATAGGTGGGAG+AGG	0.507625	3_4:-43995291	None:intergenic
GAGGGAGAGATAAAAGGCTA+TGG	0.508066	3_4:-43995250	None:intergenic
GAAGAGGAGAAGGAGAGTGA+GGG	0.511361	3_4:-43995268	None:intergenic
CCTCCTCATACCCCTCCAAA+TGG	0.515262	3_4:+43995438	Msa0502010:CDS
GAGGGAAGCAGATGGTGGAG+CGG	0.519215	3_4:-43995419	None:intergenic
CCCAGAGCATCCACCACCAC+CGG	0.521985	3_4:-43995808	None:intergenic
AGCCATAATGAGGGAGAGGA+TGG	0.527649	3_4:-43995355	None:intergenic
GAGTGTGGGTTAGGATGGTG+AGG	0.530952	3_4:-43995389	None:intergenic
TCGGTAACGACGCGTTTCCA+CGG	0.536456	3_4:-43995717	None:intergenic
GGTAAACTAGCCAATGTTGA+AGG	0.541678	3_4:-43995155	None:intergenic
AGGGTTTGAGGAAGTGAGGT+GGG	0.545949	3_4:-43995305	None:intergenic
ATGAGGCTGGAGTGTGAGGA+GGG	0.554548	3_4:-43995206	None:intergenic
GGAGTGCGGTGAAGGGTTTG+AGG	0.557377	3_4:-43995317	None:intergenic
GTGATAATAAAGCATGAGAC+CGG	0.563667	3_4:-43995778	None:intergenic
GTTGAAGGATTCTGCTAATG+GGG	0.565028	3_4:-43995140	None:intergenic
GGAAAGAGAGAGGAACAAAA+GGG	0.565658	3_4:-43995229	None:intergenic
CAATAGCCATAATGAGGGAG+AGG	0.566959	3_4:-43995359	None:intergenic
AGGGATGAGGCTGGAGTGTG+AGG	0.567634	3_4:-43995210	None:intergenic
AGGTGCCAATAGCCATAATG+AGG	0.568133	3_4:-43995365	None:intergenic
GACGTTTGATGGATCTTGAG+AGG	0.571177	3_4:-43995533	None:intergenic
TGATTGGGACGGTGGAATGA+TGG	0.571858	3_4:-43995575	None:intergenic
GTGAAGGGTTTGAGGAAGTG+AGG	0.573391	3_4:-43995309	None:intergenic
AGGTTGTGGAGTGCGGTGAA+GGG	0.575003	3_4:-43995324	None:intergenic
CAAACATTCTAAATTTCACA+TGG	0.578086	3_4:+43995181	Msa0502010:CDS
TGAAATTTAGAATGTTTGGA+TGG	0.579054	3_4:-43995176	None:intergenic
AAGGGTTTGAGGAAGTGAGG+TGG	0.580580	3_4:-43995306	None:intergenic
TATTATCACTTCGGATCCGG+TGG	0.582897	3_4:+43995792	Msa0502010:CDS
GGTATGAGGAGGGAAGCAGA+TGG	0.584509	3_4:-43995427	None:intergenic
CGACGCGTTTCCACGGCGGT+CGG	0.590079	3_4:-43995710	None:intergenic
GGAAGCAGATGGTGGAGCGG+AGG	0.590296	3_4:-43995416	None:intergenic
GAGGATGAGGTTGTGGAGTG+CGG	0.590535	3_4:-43995331	None:intergenic
AAAAGAAGGGACCATTTGGA+GGG	0.591110	3_4:-43995449	None:intergenic
AGAGAGGAACAAAAGGGATG+AGG	0.592520	3_4:-43995223	None:intergenic
ATGAGGAGGGAAGCAGATGG+TGG	0.597449	3_4:-43995424	None:intergenic
CATTTGGAGGGGTATGAGGA+GGG	0.598396	3_4:-43995437	None:intergenic
ATAAAGCATGAGACCGGAGA+CGG	0.617252	3_4:-43995772	None:intergenic
ATAACACATGATTGGGACGG+TGG	0.620196	3_4:-43995583	None:intergenic
AAAAGGCTATGGAAAGAGAG+AGG	0.627374	3_4:-43995239	None:intergenic
GTCGGATTCCAACAGTGGTG+AGG	0.628146	3_4:-43995692	None:intergenic
CGGTGGAATGATGGTACACG+TGG	0.631074	3_4:-43995566	None:intergenic
AGTGTGGGTTAGGATGGTGA+GGG	0.632987	3_4:-43995388	None:intergenic
AAAGAAGGGACCATTTGGAG+GGG	0.639807	3_4:-43995448	None:intergenic
CGGCGGTCGGATTCCAACAG+TGG	0.641832	3_4:-43995697	None:intergenic
TAATGAGGGAGAGGATGGAG+AGG	0.644404	3_4:-43995350	None:intergenic
GATGACGTGGACGGATGAGT+TGG	0.645959	3_4:-43995652	None:intergenic
AGAGTACATGATGACGTGGA+CGG	0.658163	3_4:-43995661	None:intergenic
GAACTGAACAATCTGGCAGT+CGG	0.662736	3_4:-43995736	None:intergenic
TGGAATGATGGTACACGTGG+AGG	0.666407	3_4:-43995563	None:intergenic
TAGATAACACATGATTGGGA+CGG	0.671340	3_4:-43995586	None:intergenic
GGTGCCAATAGCCATAATGA+GGG	0.679843	3_4:-43995364	None:intergenic
AGTAAGAGTACATGATGACG+TGG	0.708386	3_4:-43995665	None:intergenic
CTGTTGGAATCCGACCGCCG+TGG	0.731632	3_4:+43995700	Msa0502010:CDS
GTAACGACGCGTTTCCACGG+CGG	0.765126	3_4:-43995714	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGAAATTTAGAATGTTTGGA+TGG	-	chr3_4:43995179-43995198	None:intergenic	25.0%
!!	CATGTGAAATTTAGAATGTT+TGG	-	chr3_4:43995183-43995202	None:intergenic	25.0%
!	CAAACATTCTAAATTTCACA+TGG	+	chr3_4:43995181-43995200	Msa0502010:CDS	25.0%
!!!	TGAATTCAAGATATTTTGAG+AGG	-	chr3_4:43995494-43995513	None:intergenic	25.0%
!!!	TGTTTTTAATGCTTCTCTTT+TGG	+	chr3_4:43995854-43995873	Msa0502010:CDS	25.0%
!!	TGAAATTTAGAATGTTTGGA+TGG	-	chr3_4:43995179-43995198	None:intergenic	25.0%
!!	CATGTGAAATTTAGAATGTT+TGG	-	chr3_4:43995183-43995202	None:intergenic	25.0%
!	CAAACATTCTAAATTTCACA+TGG	+	chr3_4:43995181-43995200	Msa0502010:CDS	25.0%
!!!	TGAATTCAAGATATTTTGAG+AGG	-	chr3_4:43995494-43995513	None:intergenic	25.0%
!!!	TGTTTTTAATGCTTCTCTTT+TGG	+	chr3_4:43995854-43995873	Msa0502010:CDS	25.0%
!!!	AAATGGTCCCTTCTTTTTTT+GGG	+	chr3_4:43995455-43995474	Msa0502010:CDS	30.0%
!	CTCATGCTTTATTATCACTT+CGG	+	chr3_4:43995783-43995802	Msa0502010:CDS	30.0%
!!!	AAATGGTCCCTTCTTTTTTT+GGG	+	chr3_4:43995455-43995474	Msa0502010:CDS	30.0%
!	CTCATGCTTTATTATCACTT+CGG	+	chr3_4:43995783-43995802	Msa0502010:CDS	30.0%
	TGTTGAAGGATTCTGCTAAT+GGG	-	chr3_4:43995144-43995163	None:intergenic	35.0%
	ATGTTGAAGGATTCTGCTAA+TGG	-	chr3_4:43995145-43995164	None:intergenic	35.0%
	TTAGCAGAATCCTTCAACAT+TGG	+	chr3_4:43995145-43995164	Msa0502010:CDS	35.0%
	CAAAAAAAGAAGGGACCATT+TGG	-	chr3_4:43995456-43995475	None:intergenic	35.0%
!!!	CAAATGGTCCCTTCTTTTTT+TGG	+	chr3_4:43995454-43995473	Msa0502010:CDS	35.0%
	ATGTAGGCCCAAAAAAAGAA+GGG	-	chr3_4:43995465-43995484	None:intergenic	35.0%
!!	TTTTGAGAGGTAGAAGATGT+AGG	-	chr3_4:43995481-43995500	None:intergenic	35.0%
	TAGATAACACATGATTGGGA+CGG	-	chr3_4:43995589-43995608	None:intergenic	35.0%
	TCCCAATCATGTGTTATCTA+TGG	+	chr3_4:43995589-43995608	Msa0502010:CDS	35.0%
	GCCATAGATAACACATGATT+GGG	-	chr3_4:43995593-43995612	None:intergenic	35.0%
	AGCCATAGATAACACATGAT+TGG	-	chr3_4:43995594-43995613	None:intergenic	35.0%
!!	AGTTGGTAAGAAGTGCAATA+GGG	-	chr3_4:43995638-43995657	None:intergenic	35.0%
	GTGATAATAAAGCATGAGAC+CGG	-	chr3_4:43995781-43995800	None:intergenic	35.0%
	CTTTATTATCACTTCGGATC+CGG	+	chr3_4:43995789-43995808	Msa0502010:CDS	35.0%
	TGTTGAAGGATTCTGCTAAT+GGG	-	chr3_4:43995144-43995163	None:intergenic	35.0%
	ATGTTGAAGGATTCTGCTAA+TGG	-	chr3_4:43995145-43995164	None:intergenic	35.0%
	TTAGCAGAATCCTTCAACAT+TGG	+	chr3_4:43995145-43995164	Msa0502010:CDS	35.0%
	CAAAAAAAGAAGGGACCATT+TGG	-	chr3_4:43995456-43995475	None:intergenic	35.0%
!!!	CAAATGGTCCCTTCTTTTTT+TGG	+	chr3_4:43995454-43995473	Msa0502010:CDS	35.0%
	ATGTAGGCCCAAAAAAAGAA+GGG	-	chr3_4:43995465-43995484	None:intergenic	35.0%
!!	TTTTGAGAGGTAGAAGATGT+AGG	-	chr3_4:43995481-43995500	None:intergenic	35.0%
	TAGATAACACATGATTGGGA+CGG	-	chr3_4:43995589-43995608	None:intergenic	35.0%
	TCCCAATCATGTGTTATCTA+TGG	+	chr3_4:43995589-43995608	Msa0502010:CDS	35.0%
	GCCATAGATAACACATGATT+GGG	-	chr3_4:43995593-43995612	None:intergenic	35.0%
	AGCCATAGATAACACATGAT+TGG	-	chr3_4:43995594-43995613	None:intergenic	35.0%
!!	AGTTGGTAAGAAGTGCAATA+GGG	-	chr3_4:43995638-43995657	None:intergenic	35.0%
	GTGATAATAAAGCATGAGAC+CGG	-	chr3_4:43995781-43995800	None:intergenic	35.0%
	CTTTATTATCACTTCGGATC+CGG	+	chr3_4:43995789-43995808	Msa0502010:CDS	35.0%
	GTTGAAGGATTCTGCTAATG+GGG	-	chr3_4:43995143-43995162	None:intergenic	40.0%
	GGTAAACTAGCCAATGTTGA+AGG	-	chr3_4:43995158-43995177	None:intergenic	40.0%
	GGAAAGAGAGAGGAACAAAA+GGG	-	chr3_4:43995232-43995251	None:intergenic	40.0%
	TGGAAAGAGAGAGGAACAAA+AGG	-	chr3_4:43995233-43995252	None:intergenic	40.0%
	AAAAGGCTATGGAAAGAGAG+AGG	-	chr3_4:43995242-43995261	None:intergenic	40.0%
	AAAAGAAGGGACCATTTGGA+GGG	-	chr3_4:43995452-43995471	None:intergenic	40.0%
	AAAAAGAAGGGACCATTTGG+AGG	-	chr3_4:43995453-43995472	None:intergenic	40.0%
	GATGTAGGCCCAAAAAAAGA+AGG	-	chr3_4:43995466-43995485	None:intergenic	40.0%
!!	GAGTTGGTAAGAAGTGCAAT+AGG	-	chr3_4:43995639-43995658	None:intergenic	40.0%
!	AGTAAGAGTACATGATGACG+TGG	-	chr3_4:43995668-43995687	None:intergenic	40.0%
	TGAACACGAACTGAACAATC+TGG	-	chr3_4:43995746-43995765	None:intergenic	40.0%
	GTTGAAGGATTCTGCTAATG+GGG	-	chr3_4:43995143-43995162	None:intergenic	40.0%
	GGTAAACTAGCCAATGTTGA+AGG	-	chr3_4:43995158-43995177	None:intergenic	40.0%
	GGAAAGAGAGAGGAACAAAA+GGG	-	chr3_4:43995232-43995251	None:intergenic	40.0%
	TGGAAAGAGAGAGGAACAAA+AGG	-	chr3_4:43995233-43995252	None:intergenic	40.0%
	AAAAGGCTATGGAAAGAGAG+AGG	-	chr3_4:43995242-43995261	None:intergenic	40.0%
	AAAAGAAGGGACCATTTGGA+GGG	-	chr3_4:43995452-43995471	None:intergenic	40.0%
	AAAAAGAAGGGACCATTTGG+AGG	-	chr3_4:43995453-43995472	None:intergenic	40.0%
	GATGTAGGCCCAAAAAAAGA+AGG	-	chr3_4:43995466-43995485	None:intergenic	40.0%
!!	GAGTTGGTAAGAAGTGCAAT+AGG	-	chr3_4:43995639-43995658	None:intergenic	40.0%
!	AGTAAGAGTACATGATGACG+TGG	-	chr3_4:43995668-43995687	None:intergenic	40.0%
	TGAACACGAACTGAACAATC+TGG	-	chr3_4:43995746-43995765	None:intergenic	40.0%
	AGAGAGGAACAAAAGGGATG+AGG	-	chr3_4:43995226-43995245	None:intergenic	45.0%
	GAGGGAGAGATAAAAGGCTA+TGG	-	chr3_4:43995253-43995272	None:intergenic	45.0%
	GAGAGTGAGGGAGAGATAAA+AGG	-	chr3_4:43995259-43995278	None:intergenic	45.0%
	CAATAGCCATAATGAGGGAG+AGG	-	chr3_4:43995362-43995381	None:intergenic	45.0%
	CTCTCCCTCATTATGGCTAT+TGG	+	chr3_4:43995360-43995379	Msa0502010:CDS	45.0%
	GGTGCCAATAGCCATAATGA+GGG	-	chr3_4:43995367-43995386	None:intergenic	45.0%
	AGGTGCCAATAGCCATAATG+AGG	-	chr3_4:43995368-43995387	None:intergenic	45.0%
	AAAGAAGGGACCATTTGGAG+GGG	-	chr3_4:43995451-43995470	None:intergenic	45.0%
!	GACGTTTGATGGATCTTGAG+AGG	-	chr3_4:43995536-43995555	None:intergenic	45.0%
	GAGGAATGAGAGACGTTTGA+TGG	-	chr3_4:43995547-43995566	None:intergenic	45.0%
	ATAACACATGATTGGGACGG+TGG	-	chr3_4:43995586-43995605	None:intergenic	45.0%
!	AGAGTACATGATGACGTGGA+CGG	-	chr3_4:43995664-43995683	None:intergenic	45.0%
	TACTACTTCCTCACCACTGT+TGG	+	chr3_4:43995684-43995703	Msa0502010:CDS	45.0%
	GAACTGAACAATCTGGCAGT+CGG	-	chr3_4:43995739-43995758	None:intergenic	45.0%
	ATAAAGCATGAGACCGGAGA+CGG	-	chr3_4:43995775-43995794	None:intergenic	45.0%
	TATTATCACTTCGGATCCGG+TGG	+	chr3_4:43995792-43995811	Msa0502010:CDS	45.0%
	AGAGAGGAACAAAAGGGATG+AGG	-	chr3_4:43995226-43995245	None:intergenic	45.0%
	GAGGGAGAGATAAAAGGCTA+TGG	-	chr3_4:43995253-43995272	None:intergenic	45.0%
	GAGAGTGAGGGAGAGATAAA+AGG	-	chr3_4:43995259-43995278	None:intergenic	45.0%
	CAATAGCCATAATGAGGGAG+AGG	-	chr3_4:43995362-43995381	None:intergenic	45.0%
	CTCTCCCTCATTATGGCTAT+TGG	+	chr3_4:43995360-43995379	Msa0502010:CDS	45.0%
	GGTGCCAATAGCCATAATGA+GGG	-	chr3_4:43995367-43995386	None:intergenic	45.0%
	AGGTGCCAATAGCCATAATG+AGG	-	chr3_4:43995368-43995387	None:intergenic	45.0%
	AAAGAAGGGACCATTTGGAG+GGG	-	chr3_4:43995451-43995470	None:intergenic	45.0%
!	GACGTTTGATGGATCTTGAG+AGG	-	chr3_4:43995536-43995555	None:intergenic	45.0%
	GAGGAATGAGAGACGTTTGA+TGG	-	chr3_4:43995547-43995566	None:intergenic	45.0%
	ATAACACATGATTGGGACGG+TGG	-	chr3_4:43995586-43995605	None:intergenic	45.0%
!	AGAGTACATGATGACGTGGA+CGG	-	chr3_4:43995664-43995683	None:intergenic	45.0%
	TACTACTTCCTCACCACTGT+TGG	+	chr3_4:43995684-43995703	Msa0502010:CDS	45.0%
	GAACTGAACAATCTGGCAGT+CGG	-	chr3_4:43995739-43995758	None:intergenic	45.0%
	ATAAAGCATGAGACCGGAGA+CGG	-	chr3_4:43995775-43995794	None:intergenic	45.0%
	TATTATCACTTCGGATCCGG+TGG	+	chr3_4:43995792-43995811	Msa0502010:CDS	45.0%
	AGGAACAAAAGGGATGAGGC+TGG	-	chr3_4:43995222-43995241	None:intergenic	50.0%
	GAAGAGGAGAAGGAGAGTGA+GGG	-	chr3_4:43995271-43995290	None:intergenic	50.0%
	TTGAGGAAGTGAGGTGGGAT+AGG	-	chr3_4:43995303-43995322	None:intergenic	50.0%
	AGGGTTTGAGGAAGTGAGGT+GGG	-	chr3_4:43995308-43995327	None:intergenic	50.0%
	AAGGGTTTGAGGAAGTGAGG+TGG	-	chr3_4:43995309-43995328	None:intergenic	50.0%
	GTGAAGGGTTTGAGGAAGTG+AGG	-	chr3_4:43995312-43995331	None:intergenic	50.0%
	TAATGAGGGAGAGGATGGAG+AGG	-	chr3_4:43995353-43995372	None:intergenic	50.0%
	CTCCATCCTCTCCCTCATTA+TGG	+	chr3_4:43995353-43995372	Msa0502010:CDS	50.0%
	AGCCATAATGAGGGAGAGGA+TGG	-	chr3_4:43995358-43995377	None:intergenic	50.0%
!!	AGTGTGGGTTAGGATGGTGA+GGG	-	chr3_4:43995391-43995410	None:intergenic	50.0%
!!	GTTAGGAGTGTGGGTTAGGA+TGG	-	chr3_4:43995397-43995416	None:intergenic	50.0%
!	CATTTGGAGGGGTATGAGGA+GGG	-	chr3_4:43995440-43995459	None:intergenic	50.0%
	TGGAATGATGGTACACGTGG+AGG	-	chr3_4:43995566-43995585	None:intergenic	50.0%
	TGATTGGGACGGTGGAATGA+TGG	-	chr3_4:43995578-43995597	None:intergenic	50.0%
	AGGAACAAAAGGGATGAGGC+TGG	-	chr3_4:43995222-43995241	None:intergenic	50.0%
	GAAGAGGAGAAGGAGAGTGA+GGG	-	chr3_4:43995271-43995290	None:intergenic	50.0%
	TTGAGGAAGTGAGGTGGGAT+AGG	-	chr3_4:43995303-43995322	None:intergenic	50.0%
	AGGGTTTGAGGAAGTGAGGT+GGG	-	chr3_4:43995308-43995327	None:intergenic	50.0%
	AAGGGTTTGAGGAAGTGAGG+TGG	-	chr3_4:43995309-43995328	None:intergenic	50.0%
	GTGAAGGGTTTGAGGAAGTG+AGG	-	chr3_4:43995312-43995331	None:intergenic	50.0%
	TAATGAGGGAGAGGATGGAG+AGG	-	chr3_4:43995353-43995372	None:intergenic	50.0%
	CTCCATCCTCTCCCTCATTA+TGG	+	chr3_4:43995353-43995372	Msa0502010:CDS	50.0%
	AGCCATAATGAGGGAGAGGA+TGG	-	chr3_4:43995358-43995377	None:intergenic	50.0%
!!	AGTGTGGGTTAGGATGGTGA+GGG	-	chr3_4:43995391-43995410	None:intergenic	50.0%
!!	GTTAGGAGTGTGGGTTAGGA+TGG	-	chr3_4:43995397-43995416	None:intergenic	50.0%
!	CATTTGGAGGGGTATGAGGA+GGG	-	chr3_4:43995440-43995459	None:intergenic	50.0%
	TGGAATGATGGTACACGTGG+AGG	-	chr3_4:43995566-43995585	None:intergenic	50.0%
	TGATTGGGACGGTGGAATGA+TGG	-	chr3_4:43995578-43995597	None:intergenic	50.0%
	ATGAGGCTGGAGTGTGAGGA+GGG	-	chr3_4:43995209-43995228	None:intergenic	55.0%
	GGAAGAGGAGAAGGAGAGTG+AGG	-	chr3_4:43995272-43995291	None:intergenic	55.0%
	GGAAGTGAGGTGGGATAGGT+GGG	-	chr3_4:43995299-43995318	None:intergenic	55.0%
	AGGAAGTGAGGTGGGATAGG+TGG	-	chr3_4:43995300-43995319	None:intergenic	55.0%
	AGGTTGTGGAGTGCGGTGAA+GGG	-	chr3_4:43995327-43995346	None:intergenic	55.0%
	GAGGATGAGGTTGTGGAGTG+CGG	-	chr3_4:43995334-43995353	None:intergenic	55.0%
	GGATGGAGAGGATGAGGTTG+TGG	-	chr3_4:43995341-43995360	None:intergenic	55.0%
!!	GAGTGTGGGTTAGGATGGTG+AGG	-	chr3_4:43995392-43995411	None:intergenic	55.0%
!	GGAGGTTAGGAGTGTGGGTT+AGG	-	chr3_4:43995401-43995420	None:intergenic	55.0%
	ATGAGGAGGGAAGCAGATGG+TGG	-	chr3_4:43995427-43995446	None:intergenic	55.0%
	GGTATGAGGAGGGAAGCAGA+TGG	-	chr3_4:43995430-43995449	None:intergenic	55.0%
!	CCATTTGGAGGGGTATGAGG+AGG	-	chr3_4:43995441-43995460	None:intergenic	55.0%
	CCTCCTCATACCCCTCCAAA+TGG	+	chr3_4:43995438-43995457	Msa0502010:CDS	55.0%
!	GGACCATTTGGAGGGGTATG+AGG	-	chr3_4:43995444-43995463	None:intergenic	55.0%
	CGGTGGAATGATGGTACACG+TGG	-	chr3_4:43995569-43995588	None:intergenic	55.0%
	GATGACGTGGACGGATGAGT+TGG	-	chr3_4:43995655-43995674	None:intergenic	55.0%
	GTCGGATTCCAACAGTGGTG+AGG	-	chr3_4:43995695-43995714	None:intergenic	55.0%
	TCGGTAACGACGCGTTTCCA+CGG	-	chr3_4:43995720-43995739	None:intergenic	55.0%
	TATCACTTCGGATCCGGTGG+TGG	+	chr3_4:43995795-43995814	Msa0502010:CDS	55.0%
!!	TGGTGGATGCTCTGGGATGA+AGG	+	chr3_4:43995815-43995834	Msa0502010:CDS	55.0%
!!	GATGCTCTGGGATGAAGGCT+TGG	+	chr3_4:43995820-43995839	Msa0502010:CDS	55.0%
	ATGAGGCTGGAGTGTGAGGA+GGG	-	chr3_4:43995209-43995228	None:intergenic	55.0%
	GGAAGAGGAGAAGGAGAGTG+AGG	-	chr3_4:43995272-43995291	None:intergenic	55.0%
	GGAAGTGAGGTGGGATAGGT+GGG	-	chr3_4:43995299-43995318	None:intergenic	55.0%
	AGGAAGTGAGGTGGGATAGG+TGG	-	chr3_4:43995300-43995319	None:intergenic	55.0%
	AGGTTGTGGAGTGCGGTGAA+GGG	-	chr3_4:43995327-43995346	None:intergenic	55.0%
	GAGGATGAGGTTGTGGAGTG+CGG	-	chr3_4:43995334-43995353	None:intergenic	55.0%
	GGATGGAGAGGATGAGGTTG+TGG	-	chr3_4:43995341-43995360	None:intergenic	55.0%
!!	GAGTGTGGGTTAGGATGGTG+AGG	-	chr3_4:43995392-43995411	None:intergenic	55.0%
!	GGAGGTTAGGAGTGTGGGTT+AGG	-	chr3_4:43995401-43995420	None:intergenic	55.0%
	ATGAGGAGGGAAGCAGATGG+TGG	-	chr3_4:43995427-43995446	None:intergenic	55.0%
	GGTATGAGGAGGGAAGCAGA+TGG	-	chr3_4:43995430-43995449	None:intergenic	55.0%
!	CCATTTGGAGGGGTATGAGG+AGG	-	chr3_4:43995441-43995460	None:intergenic	55.0%
	CCTCCTCATACCCCTCCAAA+TGG	+	chr3_4:43995438-43995457	Msa0502010:CDS	55.0%
!	GGACCATTTGGAGGGGTATG+AGG	-	chr3_4:43995444-43995463	None:intergenic	55.0%
	CGGTGGAATGATGGTACACG+TGG	-	chr3_4:43995569-43995588	None:intergenic	55.0%
	GATGACGTGGACGGATGAGT+TGG	-	chr3_4:43995655-43995674	None:intergenic	55.0%
	GTCGGATTCCAACAGTGGTG+AGG	-	chr3_4:43995695-43995714	None:intergenic	55.0%
	TCGGTAACGACGCGTTTCCA+CGG	-	chr3_4:43995720-43995739	None:intergenic	55.0%
	TATCACTTCGGATCCGGTGG+TGG	+	chr3_4:43995795-43995814	Msa0502010:CDS	55.0%
!!	TGGTGGATGCTCTGGGATGA+AGG	+	chr3_4:43995815-43995834	Msa0502010:CDS	55.0%
!!	GATGCTCTGGGATGAAGGCT+TGG	+	chr3_4:43995820-43995839	Msa0502010:CDS	55.0%
	GATGAGGCTGGAGTGTGAGG+AGG	-	chr3_4:43995210-43995229	None:intergenic	60.0%
	AGGGATGAGGCTGGAGTGTG+AGG	-	chr3_4:43995213-43995232	None:intergenic	60.0%
	GTGGGAGAGGGAAGAGGAGA+AGG	-	chr3_4:43995281-43995300	None:intergenic	60.0%
	GGATAGGTGGGAGAGGGAAG+AGG	-	chr3_4:43995287-43995306	None:intergenic	60.0%
	GAGGTGGGATAGGTGGGAGA+GGG	-	chr3_4:43995293-43995312	None:intergenic	60.0%
	TGAGGTGGGATAGGTGGGAG+AGG	-	chr3_4:43995294-43995313	None:intergenic	60.0%
	GGAGTGCGGTGAAGGGTTTG+AGG	-	chr3_4:43995320-43995339	None:intergenic	60.0%
	GAGGTTGTGGAGTGCGGTGA+AGG	-	chr3_4:43995328-43995347	None:intergenic	60.0%
	GGGAGAGGATGGAGAGGATG+AGG	-	chr3_4:43995347-43995366	None:intergenic	60.0%
!!	GTGGGTTAGGATGGTGAGGG+AGG	-	chr3_4:43995388-43995407	None:intergenic	60.0%
!	GGAGCGGAGGTTAGGAGTGT+GGG	-	chr3_4:43995406-43995425	None:intergenic	60.0%
	TGGAGCGGAGGTTAGGAGTG+TGG	-	chr3_4:43995407-43995426	None:intergenic	60.0%
!!	CAGATGGTGGAGCGGAGGTT+AGG	-	chr3_4:43995414-43995433	None:intergenic	60.0%
!!	GAGGGAAGCAGATGGTGGAG+CGG	-	chr3_4:43995422-43995441	None:intergenic	60.0%
	GTAACGACGCGTTTCCACGG+CGG	-	chr3_4:43995717-43995736	None:intergenic	60.0%
	GTGTTCAGCTTCGCCGTCTC+CGG	+	chr3_4:43995759-43995778	Msa0502010:CDS	60.0%
	GATGAGGCTGGAGTGTGAGG+AGG	-	chr3_4:43995210-43995229	None:intergenic	60.0%
	AGGGATGAGGCTGGAGTGTG+AGG	-	chr3_4:43995213-43995232	None:intergenic	60.0%
	GTGGGAGAGGGAAGAGGAGA+AGG	-	chr3_4:43995281-43995300	None:intergenic	60.0%
	GGATAGGTGGGAGAGGGAAG+AGG	-	chr3_4:43995287-43995306	None:intergenic	60.0%
	GAGGTGGGATAGGTGGGAGA+GGG	-	chr3_4:43995293-43995312	None:intergenic	60.0%
	TGAGGTGGGATAGGTGGGAG+AGG	-	chr3_4:43995294-43995313	None:intergenic	60.0%
	GGAGTGCGGTGAAGGGTTTG+AGG	-	chr3_4:43995320-43995339	None:intergenic	60.0%
	GAGGTTGTGGAGTGCGGTGA+AGG	-	chr3_4:43995328-43995347	None:intergenic	60.0%
	GGGAGAGGATGGAGAGGATG+AGG	-	chr3_4:43995347-43995366	None:intergenic	60.0%
!!	GTGGGTTAGGATGGTGAGGG+AGG	-	chr3_4:43995388-43995407	None:intergenic	60.0%
!	GGAGCGGAGGTTAGGAGTGT+GGG	-	chr3_4:43995406-43995425	None:intergenic	60.0%
	TGGAGCGGAGGTTAGGAGTG+TGG	-	chr3_4:43995407-43995426	None:intergenic	60.0%
!!	CAGATGGTGGAGCGGAGGTT+AGG	-	chr3_4:43995414-43995433	None:intergenic	60.0%
!!	GAGGGAAGCAGATGGTGGAG+CGG	-	chr3_4:43995422-43995441	None:intergenic	60.0%
	GTAACGACGCGTTTCCACGG+CGG	-	chr3_4:43995717-43995736	None:intergenic	60.0%
	GTGTTCAGCTTCGCCGTCTC+CGG	+	chr3_4:43995759-43995778	Msa0502010:CDS	60.0%
!!	GGAAGCAGATGGTGGAGCGG+AGG	-	chr3_4:43995419-43995438	None:intergenic	65.0%
	CGGCGGTCGGATTCCAACAG+TGG	-	chr3_4:43995700-43995719	None:intergenic	65.0%
	CTGTTGGAATCCGACCGCCG+TGG	+	chr3_4:43995700-43995719	Msa0502010:CDS	65.0%
!	CACTTCGGATCCGGTGGTGG+TGG	+	chr3_4:43995798-43995817	Msa0502010:CDS	65.0%
!!	TCCGGTGGTGGTGGATGCTC+TGG	+	chr3_4:43995807-43995826	Msa0502010:CDS	65.0%
!	CCCAGAGCATCCACCACCAC+CGG	-	chr3_4:43995811-43995830	None:intergenic	65.0%
!!	CCGGTGGTGGTGGATGCTCT+GGG	+	chr3_4:43995808-43995827	Msa0502010:CDS	65.0%
!!	GGAAGCAGATGGTGGAGCGG+AGG	-	chr3_4:43995419-43995438	None:intergenic	65.0%
	CGGCGGTCGGATTCCAACAG+TGG	-	chr3_4:43995700-43995719	None:intergenic	65.0%
	CTGTTGGAATCCGACCGCCG+TGG	+	chr3_4:43995700-43995719	Msa0502010:CDS	65.0%
!	CACTTCGGATCCGGTGGTGG+TGG	+	chr3_4:43995798-43995817	Msa0502010:CDS	65.0%
!!	TCCGGTGGTGGTGGATGCTC+TGG	+	chr3_4:43995807-43995826	Msa0502010:CDS	65.0%
!	CCCAGAGCATCCACCACCAC+CGG	-	chr3_4:43995811-43995830	None:intergenic	65.0%
!!	CCGGTGGTGGTGGATGCTCT+GGG	+	chr3_4:43995808-43995827	Msa0502010:CDS	65.0%
	CGACGCGTTTCCACGGCGGT+CGG	-	chr3_4:43995713-43995732	None:intergenic	70.0%
	CGACGCGTTTCCACGGCGGT+CGG	-	chr3_4:43995713-43995732	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	43995132	43995953	43995132	ID=Msa0502010;Name=Msa0502010
chr3_4	mRNA	43995132	43995953	43995132	ID=Msa0502010-mRNA-1;Parent=Msa0502010;Name=Msa0502010-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|273
chr3_4	exon	43995132	43995953	43995132	ID=Msa0502010-mRNA-1:exon:9368;Parent=Msa0502010-mRNA-1
chr3_4	CDS	43995132	43995953	43995132	ID=Msa0502010-mRNA-1:cds;Parent=Msa0502010-mRNA-1

Gene Sequence

>Msa0502010

ATGGAAAACCCCATTAGCAGAATCCTTCAACATTGGCTAGTTTACCATCCAAACATTCTAAATTTCACATGGAACCCTCCTCACACTCCAGCCTCATCCCTTTTGTTCCTCTCTCTTTCCATAGCCTTTTATCTCTCCCTCACTCTCCTTCTCCTCTTCCCTCTCCCACCTATCCCACCTCACTTCCTCAAACCCTTCACCGCACTCCACAACCTCATCCTCTCCATCCTCTCCCTCATTATGGCTATTGGCACCTCCCTCACCATCCTAACCCACACTCCTAACCTCCGCTCCACCATCTGCTTCCCTCCTCATACCCCTCCAAATGGTCCCTTCTTTTTTTGGGCCTACATCTTCTACCTCTCAAAATATCTTGAATTCATTGACACACTCTTCATCATCCTCTCAAGATCCATCAAACGTCTCTCATTCCTCCACGTGTACCATCATTCCACCGTCCCAATCATGTGTTATCTATGGCTTAATTCTTCTCAATCACTCTTCCCTATTGCACTTCTTACCAACTCATCCGTCCACGTCATCATGTACTCTTACTACTTCCTCACCACTGTTGGAATCCGACCGCCGTGGAAACGCGTCGTTACCGACTGCCAGATTGTTCAGTTCGTGTTCAGCTTCGCCGTCTCCGGTCTCATGCTTTATTATCACTTCGGATCCGGTGGTGGTGGATGCTCTGGGATGAAGGCTTGGTGCTTCAATGCTGTTTTTAATGCTTCTCTTTTGGCTCTTTTTCTTGATTTTCATCTCAAGAGTTATGCTAATTCTAAGAAGAAGAAACGTACTACCGAAAAAGACTCGTGA

Protein sequence

>Msa0502010

MENPISRILQHWLVYHPNILNFTWNPPHTPASSLLFLSLSIAFYLSLTLLLLFPLPPIPPHFLKPFTALHNLILSILSLIMAIGTSLTILTHTPNLRSTICFPPHTPPNGPFFFWAYIFYLSKYLEFIDTLFIILSRSIKRLSFLHVYHHSTVPIMCYLWLNSSQSLFPIALLTNSSVHVIMYSYYFLTTVGIRPPWKRVVTDCQIVQFVFSFAVSGLMLYYHFGSGGGGCSGMKAWCFNAVFNASLLALFLDFHLKSYANSKKKKRTTEKDS*