AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1439880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439880 MtrunA17_Chr1g0200991 95.305 213 10 0 1 213 1 213 1.44e-150 416
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439880 AT5G36120.1 76.271 118 28 0 94 211 54 171 1.97e-60 187

Find 61 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTCAAGCCTGCCAATTT+TGG 0.175186 tig0028900:+37425 Msa1439880:CDS
AAATTAGCTATTGGATTTCT+AGG 0.235118 tig0028900:+38799 Msa1439880:CDS
GTGGAAGCATGTAAAGTTTC+TGG 0.237885 tig0028900:-38727 None:intergenic
GCAGTAGCTCCATTTAATAT+TGG 0.271603 tig0028900:-38652 None:intergenic
GCTACTGCAAAATTAGCTAT+TGG 0.286164 tig0028900:+38790 Msa1439880:CDS
ATTCTTCAGAAACTTGCTTT+TGG 0.293281 tig0028900:+39333 Msa1439880:three_prime_UTR
AACTTTCCAACTGGAAGTTT+TGG 0.294268 tig0028900:-38880 None:intergenic
GATAAGGTTCCCTCCTTATC+TGG 0.301317 tig0028900:+37214 Msa1439880:five_prime_UTR
ATCTTAAAAGAGTGCATTAA+AGG 0.316351 tig0028900:+39215 Msa1439880:three_prime_UTR
TGCACAGAAATGTCTTGATT+TGG 0.323938 tig0028900:+38672 Msa1439880:CDS
CAGTAGCTCCATTTAATATT+GGG 0.326304 tig0028900:-38651 None:intergenic
GGTCCCTTCCTCTCAGCATT+TGG 0.328305 tig0028900:+38820 Msa1439880:CDS
GATTGCGTCGCCATTGTCTT+TGG 0.341765 tig0028900:-37252 None:intergenic
GTTACTCCTGTGGTTTGGTT+TGG 0.343396 tig0028900:+38985 Msa1439880:CDS
GCAACATTCCCAATATTAAA+TGG 0.349940 tig0028900:+38643 Msa1439880:CDS
ATAGACGCCAAAGCCAAAAT+TGG 0.364576 tig0028900:-37438 None:intergenic
AAAGTGATTCCACCTCTTGC+TGG 0.406086 tig0028900:+38955 Msa1439880:CDS
TCCTTCCATGCGGGAATCAC+TGG 0.420299 tig0028900:+37294 Msa1439880:CDS
CCGTTTACATTTCTTCTAGT+AGG 0.431697 tig0028900:-38562 None:intergenic
TTGGCAGGCTTGAATATTGA+AGG 0.440570 tig0028900:-37419 None:intergenic
TGGATGTTACTCCTGTGGTT+TGG 0.458618 tig0028900:+38980 Msa1439880:CDS
ATTTACACTTGCACTCATCC+TGG 0.465511 tig0028900:+39192 Msa1439880:three_prime_UTR
ACATACGGAAACTTTCCAAC+TGG 0.468445 tig0028900:-38889 None:intergenic
GATTCCACCTCTTGCTGGTG+TGG 0.479342 tig0028900:+38960 Msa1439880:CDS
TGTTCATGTTACACGGAAGT+TGG 0.493516 tig0028900:+38607 Msa1439880:CDS
AAAACCAAATGCTGAGAGGA+AGG 0.508019 tig0028900:-38824 None:intergenic
CCTACTAGAAGAAATGTAAA+CGG 0.509362 tig0028900:+38562 Msa1439880:CDS
GCTTCCACAGATTTCATGAC+AGG 0.516968 tig0028900:+38742 Msa1439880:CDS
ATTACATGTAATGTACGATA+AGG 0.518920 tig0028900:+37198 Msa1439880:five_prime_UTR
ACCAGTGATTCCCGCATGGA+AGG 0.535939 tig0028900:-37295 None:intergenic
ACTAATTGACTTGTTGTGAA+AGG 0.535966 tig0028900:-39062 None:intergenic
AATCTCAACTCCTTCCATGC+GGG 0.548178 tig0028900:+37285 Msa1439880:CDS
ACGCCAAAGCCAAAATTGGC+AGG 0.551243 tig0028900:-37434 None:intergenic
GGAGCATAAGCTATTACATA+CGG 0.551916 tig0028900:-38904 None:intergenic
ACTAAGACAGTAACCAGATA+AGG 0.554526 tig0028900:-37227 None:intergenic
TAATATTGGGAATGTTGCGC+TGG 0.558180 tig0028900:-38638 None:intergenic
TTTCTTAACGAAATATTAGT+GGG 0.558433 tig0028900:+39018 Msa1439880:CDS
GGAACGAGAAGAGGTTCAGT+AGG 0.566984 tig0028900:-38925 None:intergenic
TGGTGTGGATGTTACTCCTG+TGG 0.582978 tig0028900:+38975 Msa1439880:CDS
AAGACAGTAACCAGATAAGG+AGG 0.588124 tig0028900:-37224 None:intergenic
GGTGGAATCACTTTGCGAGT+AGG 0.596999 tig0028900:-38946 None:intergenic
CAATCCTGTCATGAAATCTG+TGG 0.605529 tig0028900:-38746 None:intergenic
TCGTGAGAATAGTCATGTCA+TGG 0.608890 tig0028900:+38854 Msa1439880:CDS
TGGTATCCAAAACTTCCAGT+TGG 0.610622 tig0028900:+38874 Msa1439880:CDS
AAACCAAATGCTGAGAGGAA+GGG 0.610645 tig0028900:-38823 None:intergenic
AGCAGTCCAAACCAAACCAC+AGG 0.619774 tig0028900:-38991 None:intergenic
GAAATATTAGTGGGTCCACA+AGG 0.621452 tig0028900:+39027 Msa1439880:CDS
TTGCGAGTAGGAACGAGAAG+AGG 0.621864 tig0028900:-38934 None:intergenic
GCAATGTTGTTCATGTTACA+CGG 0.626783 tig0028900:+38600 Msa1439880:CDS
ACATCCACACCAGCAAGAGG+TGG 0.639484 tig0028900:-38964 None:intergenic
CAGCCGTGTGGTATCCATTG+CGG 0.652811 tig0028900:-39281 None:intergenic
GTAACATCCACACCAGCAAG+AGG 0.665466 tig0028900:-38967 None:intergenic
GAACCGCAATGGATACCACA+CGG 0.669767 tig0028900:+39278 Msa1439880:three_prime_UTR
AGTTACCAGTGATTCCCGCA+TGG 0.677820 tig0028900:-37299 None:intergenic
AGACAGTAACCAGATAAGGA+GGG 0.679427 tig0028900:-37223 None:intergenic
AGAGAAAACCAAATGCTGAG+AGG 0.680045 tig0028900:-38828 None:intergenic
GTCTTAGTGACCAAAGACAA+TGG 0.682222 tig0028900:+37242 Msa1439880:exon
TAATCTCAACTCCTTCCATG+CGG 0.694188 tig0028900:+37284 Msa1439880:CDS
AGGAGAACAAGTAATCCTTG+TGG 0.699959 tig0028900:-39042 None:intergenic
ATGGATACCACACGGCTGTG+TGG 0.706468 tig0028900:+39286 Msa1439880:three_prime_UTR
AAACACACCACACAGCCGTG+TGG 0.741901 tig0028900:-39293 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATTTTTCTTTAATAAAG+AGG + tig0028900:37506-37525 Msa1439880:intron 15.0%
!!! ACATTTTTCTTTAATAAAGA+GGG + tig0028900:37507-37526 Msa1439880:intron 15.0%
!!! ATTTATTCTAAAATATGTTG+TGG + tig0028900:37607-37626 Msa1439880:intron 15.0%
!!! TTTATTCTAAAATATGTTGT+GGG + tig0028900:37608-37627 Msa1439880:intron 15.0%
!! TATTATTACTTGAACAATTA+TGG + tig0028900:37917-37936 Msa1439880:intron 15.0%
!!! AACATTTTTCTTTAATAAAG+AGG + tig0028900:37506-37525 Msa1439880:intron 15.0%
!!! ACATTTTTCTTTAATAAAGA+GGG + tig0028900:37507-37526 Msa1439880:intron 15.0%
!!! ATTTATTCTAAAATATGTTG+TGG + tig0028900:37607-37626 Msa1439880:intron 15.0%
!!! TTTATTCTAAAATATGTTGT+GGG + tig0028900:37608-37627 Msa1439880:intron 15.0%
!! TATTATTACTTGAACAATTA+TGG + tig0028900:37917-37936 Msa1439880:intron 15.0%
!! TATTGAATTAGTTGAACAAA+TGG + tig0028900:37582-37601 Msa1439880:intron 20.0%
!! AAAGAATACACATAATACTA+CGG + tig0028900:37953-37972 Msa1439880:intron 20.0%
!!! TTTTCTTAACGAAATATTAG+TGG + tig0028900:39017-39036 Msa1439880:CDS 20.0%
!! TTTCTTAACGAAATATTAGT+GGG + tig0028900:39018-39037 Msa1439880:CDS 20.0%
!!! TTGTATCTTATCATTCTTTT+TGG + tig0028900:39117-39136 Msa1439880:three_prime_UTR 20.0%
!! TATTGAATTAGTTGAACAAA+TGG + tig0028900:37582-37601 Msa1439880:intron 20.0%
!! AAAGAATACACATAATACTA+CGG + tig0028900:37953-37972 Msa1439880:intron 20.0%
!!! TTTTCTTAACGAAATATTAG+TGG + tig0028900:39017-39036 Msa1439880:CDS 20.0%
!! TTTCTTAACGAAATATTAGT+GGG + tig0028900:39018-39037 Msa1439880:CDS 20.0%
!!! TTGTATCTTATCATTCTTTT+TGG + tig0028900:39117-39136 Msa1439880:three_prime_UTR 20.0%
! ATTACATGTAATGTACGATA+AGG + tig0028900:37198-37217 Msa1439880:five_prime_UTR 25.0%
!!! TTCCATTTTTTCAATCTTGT+AGG + tig0028900:37389-37408 Msa1439880:intron 25.0%
!!! TCCATTTTTTCAATCTTGTA+GGG + tig0028900:37390-37409 Msa1439880:intron 25.0%
!! TACAATTAAGTGATAATGAG+TGG - tig0028900:37692-37711 None:intergenic 25.0%
! ACTCATTATCACTTAATTGT+AGG + tig0028900:37691-37710 Msa1439880:intron 25.0%
!!! ACAATTTGATTTGTTGAGTA+TGG - tig0028900:38151-38170 None:intergenic 25.0%
! ACTGATAAATAAGTAAAGCT+TGG - tig0028900:38217-38236 None:intergenic 25.0%
! ATTTGCTTAAACAAACTCAA+TGG - tig0028900:38432-38451 None:intergenic 25.0%
! AAATTAGCTATTGGATTTCT+AGG + tig0028900:38799-38818 Msa1439880:CDS 25.0%
!! ATCTTAAAAGAGTGCATTAA+AGG + tig0028900:39215-39234 Msa1439880:three_prime_UTR 25.0%
! ATTACATGTAATGTACGATA+AGG + tig0028900:37198-37217 Msa1439880:five_prime_UTR 25.0%
!!! TTCCATTTTTTCAATCTTGT+AGG + tig0028900:37389-37408 Msa1439880:intron 25.0%
!!! TCCATTTTTTCAATCTTGTA+GGG + tig0028900:37390-37409 Msa1439880:intron 25.0%
!! TACAATTAAGTGATAATGAG+TGG - tig0028900:37692-37711 None:intergenic 25.0%
! ACTCATTATCACTTAATTGT+AGG + tig0028900:37691-37710 Msa1439880:intron 25.0%
!!! ACAATTTGATTTGTTGAGTA+TGG - tig0028900:38151-38170 None:intergenic 25.0%
! ACTGATAAATAAGTAAAGCT+TGG - tig0028900:38217-38236 None:intergenic 25.0%
! ATTTGCTTAAACAAACTCAA+TGG - tig0028900:38432-38451 None:intergenic 25.0%
! AAATTAGCTATTGGATTTCT+AGG + tig0028900:38799-38818 Msa1439880:CDS 25.0%
!! ATCTTAAAAGAGTGCATTAA+AGG + tig0028900:39215-39234 Msa1439880:three_prime_UTR 25.0%
GAAGGTAGAAATGATAAGAA+AGG - tig0028900:37344-37363 None:intergenic 30.0%
AAAGAGTGAAAGTGAAATGA+AGG - tig0028900:37362-37381 None:intergenic 30.0%
!!! ATTTTTTCAATCTTGTAGGG+CGG + tig0028900:37393-37412 Msa1439880:intron 30.0%
CATAAATATGATACTGCAAC+TGG - tig0028900:37549-37568 None:intergenic 30.0%
CAGTTGCAGTATCATATTTA+TGG + tig0028900:37547-37566 Msa1439880:intron 30.0%
GGATTCATAAAGTTTGATGT+CGG + tig0028900:37661-37680 Msa1439880:intron 30.0%
CACTTAATTGTAGGTTTCTA+TGG + tig0028900:37700-37719 Msa1439880:intron 30.0%
CAACTAGTAACAAAAGAGTA+AGG + tig0028900:37799-37818 Msa1439880:intron 30.0%
CTAGTGTGTTCAAAATTTCA+TGG + tig0028900:38298-38317 Msa1439880:intron 30.0%
!!! CAGTTCAGTTGTTTTTTTGT+AGG + tig0028900:38345-38364 Msa1439880:intron 30.0%
CAATTTATTCCTAATCCTAC+TGG + tig0028900:38378-38397 Msa1439880:intron 30.0%
TGGAAGAAAATGCATATGTT+TGG - tig0028900:38460-38479 None:intergenic 30.0%
! TAACATGATATTTTGCAACG+TGG - tig0028900:38480-38499 None:intergenic 30.0%
CCTACTAGAAGAAATGTAAA+CGG + tig0028900:38562-38581 Msa1439880:CDS 30.0%
GCAACATTCCCAATATTAAA+TGG + tig0028900:38643-38662 Msa1439880:CDS 30.0%
CAGTAGCTCCATTTAATATT+GGG - tig0028900:38654-38673 None:intergenic 30.0%
!! ACTAATTGACTTGTTGTGAA+AGG - tig0028900:39065-39084 None:intergenic 30.0%
! AGACTAGTATAAATTTTGCG+TGG - tig0028900:39245-39264 None:intergenic 30.0%
!! ATTCTTCAGAAACTTGCTTT+TGG + tig0028900:39333-39352 Msa1439880:three_prime_UTR 30.0%
GAAGGTAGAAATGATAAGAA+AGG - tig0028900:37344-37363 None:intergenic 30.0%
AAAGAGTGAAAGTGAAATGA+AGG - tig0028900:37362-37381 None:intergenic 30.0%
!!! ATTTTTTCAATCTTGTAGGG+CGG + tig0028900:37393-37412 Msa1439880:intron 30.0%
CATAAATATGATACTGCAAC+TGG - tig0028900:37549-37568 None:intergenic 30.0%
CAGTTGCAGTATCATATTTA+TGG + tig0028900:37547-37566 Msa1439880:intron 30.0%
GGATTCATAAAGTTTGATGT+CGG + tig0028900:37661-37680 Msa1439880:intron 30.0%
CACTTAATTGTAGGTTTCTA+TGG + tig0028900:37700-37719 Msa1439880:intron 30.0%
CAACTAGTAACAAAAGAGTA+AGG + tig0028900:37799-37818 Msa1439880:intron 30.0%
CTAGTGTGTTCAAAATTTCA+TGG + tig0028900:38298-38317 Msa1439880:intron 30.0%
!!! CAGTTCAGTTGTTTTTTTGT+AGG + tig0028900:38345-38364 Msa1439880:intron 30.0%
CAATTTATTCCTAATCCTAC+TGG + tig0028900:38378-38397 Msa1439880:intron 30.0%
TGGAAGAAAATGCATATGTT+TGG - tig0028900:38460-38479 None:intergenic 30.0%
! TAACATGATATTTTGCAACG+TGG - tig0028900:38480-38499 None:intergenic 30.0%
CCTACTAGAAGAAATGTAAA+CGG + tig0028900:38562-38581 Msa1439880:CDS 30.0%
GCAACATTCCCAATATTAAA+TGG + tig0028900:38643-38662 Msa1439880:CDS 30.0%
CAGTAGCTCCATTTAATATT+GGG - tig0028900:38654-38673 None:intergenic 30.0%
!! ACTAATTGACTTGTTGTGAA+AGG - tig0028900:39065-39084 None:intergenic 30.0%
! AGACTAGTATAAATTTTGCG+TGG - tig0028900:39245-39264 None:intergenic 30.0%
!! ATTCTTCAGAAACTTGCTTT+TGG + tig0028900:39333-39352 Msa1439880:three_prime_UTR 30.0%
ACTAAGACAGTAACCAGATA+AGG - tig0028900:37230-37249 None:intergenic 35.0%
GCCCTACAAGATTGAAAAAA+TGG - tig0028900:37394-37413 None:intergenic 35.0%
! ATATTCAAGCCTGCCAATTT+TGG + tig0028900:37425-37444 Msa1439880:CDS 35.0%
TGTTGTGGGATTATGACATT+CGG + tig0028900:37622-37641 Msa1439880:intron 35.0%
ATGACATTCGGTAGTTTCTT+AGG + tig0028900:37634-37653 Msa1439880:intron 35.0%
TTCGGTAGTTTCTTAGGATT+TGG + tig0028900:37640-37659 Msa1439880:intron 35.0%
AAATCGCAAGACAATGAACA+AGG + tig0028900:37829-37848 Msa1439880:intron 35.0%
!! TAGGCACAACTTTTTGTTGT+GGG - tig0028900:38044-38063 None:intergenic 35.0%
! TTAGGCACAACTTTTTGTTG+TGG - tig0028900:38045-38064 None:intergenic 35.0%
! GAGAATTTGAGTTCCAATCT+TGG + tig0028900:38175-38194 Msa1439880:intron 35.0%
AAATAAGTAAAGCTTGGCCA+AGG - tig0028900:38211-38230 None:intergenic 35.0%
!!! TTTTTCTGGTCTTAACTCTC+TGG - tig0028900:38276-38295 None:intergenic 35.0%
! TGAACACACTAGCATTTTTC+TGG - tig0028900:38290-38309 None:intergenic 35.0%
AAACAACTGAACTGTTGCAT+GGG - tig0028900:38339-38358 None:intergenic 35.0%
AAAACAACTGAACTGTTGCA+TGG - tig0028900:38340-38359 None:intergenic 35.0%
TTATAACGACTAGTACCAGT+AGG - tig0028900:38396-38415 None:intergenic 35.0%
CCGTTTACATTTCTTCTAGT+AGG - tig0028900:38565-38584 None:intergenic 35.0%
GCAATGTTGTTCATGTTACA+CGG + tig0028900:38600-38619 Msa1439880:CDS 35.0%
GCAGTAGCTCCATTTAATAT+TGG - tig0028900:38655-38674 None:intergenic 35.0%
TGCACAGAAATGTCTTGATT+TGG + tig0028900:38672-38691 Msa1439880:CDS 35.0%
! ATAGCTAATTTTGCAGTAGC+AGG - tig0028900:38790-38809 None:intergenic 35.0%
GCTACTGCAAAATTAGCTAT+TGG + tig0028900:38790-38809 Msa1439880:CDS 35.0%
! AACTTTCCAACTGGAAGTTT+TGG - tig0028900:38883-38902 None:intergenic 35.0%
GGAGCATAAGCTATTACATA+CGG - tig0028900:38907-38926 None:intergenic 35.0%
!!! AATGCACTCTTTTAAGATCC+AGG - tig0028900:39213-39232 None:intergenic 35.0%
!! ACAACTATTTTGAACCGCAA+TGG + tig0028900:39267-39286 Msa1439880:three_prime_UTR 35.0%
ACTAAGACAGTAACCAGATA+AGG - tig0028900:37230-37249 None:intergenic 35.0%
GCCCTACAAGATTGAAAAAA+TGG - tig0028900:37394-37413 None:intergenic 35.0%
! ATATTCAAGCCTGCCAATTT+TGG + tig0028900:37425-37444 Msa1439880:CDS 35.0%
TGTTGTGGGATTATGACATT+CGG + tig0028900:37622-37641 Msa1439880:intron 35.0%
ATGACATTCGGTAGTTTCTT+AGG + tig0028900:37634-37653 Msa1439880:intron 35.0%
TTCGGTAGTTTCTTAGGATT+TGG + tig0028900:37640-37659 Msa1439880:intron 35.0%
AAATCGCAAGACAATGAACA+AGG + tig0028900:37829-37848 Msa1439880:intron 35.0%
!! TAGGCACAACTTTTTGTTGT+GGG - tig0028900:38044-38063 None:intergenic 35.0%
! TTAGGCACAACTTTTTGTTG+TGG - tig0028900:38045-38064 None:intergenic 35.0%
! GAGAATTTGAGTTCCAATCT+TGG + tig0028900:38175-38194 Msa1439880:intron 35.0%
AAATAAGTAAAGCTTGGCCA+AGG - tig0028900:38211-38230 None:intergenic 35.0%
!!! TTTTTCTGGTCTTAACTCTC+TGG - tig0028900:38276-38295 None:intergenic 35.0%
! TGAACACACTAGCATTTTTC+TGG - tig0028900:38290-38309 None:intergenic 35.0%
AAACAACTGAACTGTTGCAT+GGG - tig0028900:38339-38358 None:intergenic 35.0%
AAAACAACTGAACTGTTGCA+TGG - tig0028900:38340-38359 None:intergenic 35.0%
TTATAACGACTAGTACCAGT+AGG - tig0028900:38396-38415 None:intergenic 35.0%
CCGTTTACATTTCTTCTAGT+AGG - tig0028900:38565-38584 None:intergenic 35.0%
GCAATGTTGTTCATGTTACA+CGG + tig0028900:38600-38619 Msa1439880:CDS 35.0%
GCAGTAGCTCCATTTAATAT+TGG - tig0028900:38655-38674 None:intergenic 35.0%
TGCACAGAAATGTCTTGATT+TGG + tig0028900:38672-38691 Msa1439880:CDS 35.0%
! ATAGCTAATTTTGCAGTAGC+AGG - tig0028900:38790-38809 None:intergenic 35.0%
GCTACTGCAAAATTAGCTAT+TGG + tig0028900:38790-38809 Msa1439880:CDS 35.0%
! AACTTTCCAACTGGAAGTTT+TGG - tig0028900:38883-38902 None:intergenic 35.0%
GGAGCATAAGCTATTACATA+CGG - tig0028900:38907-38926 None:intergenic 35.0%
!!! AATGCACTCTTTTAAGATCC+AGG - tig0028900:39213-39232 None:intergenic 35.0%
!! ACAACTATTTTGAACCGCAA+TGG + tig0028900:39267-39286 Msa1439880:three_prime_UTR 35.0%
AGACAGTAACCAGATAAGGA+GGG - tig0028900:37226-37245 None:intergenic 40.0%
AAGACAGTAACCAGATAAGG+AGG - tig0028900:37227-37246 None:intergenic 40.0%
GTCTTAGTGACCAAAGACAA+TGG + tig0028900:37242-37261 Msa1439880:exon 40.0%
TAATCTCAACTCCTTCCATG+CGG + tig0028900:37284-37303 Msa1439880:CDS 40.0%
TTGGCAGGCTTGAATATTGA+AGG - tig0028900:37422-37441 None:intergenic 40.0%
ATAGACGCCAAAGCCAAAAT+TGG - tig0028900:37441-37460 None:intergenic 40.0%
! GTTTCTATGGCTACTAGCTT+TGG + tig0028900:37713-37732 Msa1439880:intron 40.0%
!! TAGCTTTGGCATAATGCTAG+TGG + tig0028900:37727-37746 Msa1439880:intron 40.0%
! AGCTTTGGCATAATGCTAGT+GGG + tig0028900:37728-37747 Msa1439880:intron 40.0%
TTGCAAACGTAGACACACTT+GGG - tig0028900:37875-37894 None:intergenic 40.0%
!! AGGCACAACTTTTTGTTGTG+GGG - tig0028900:38043-38062 None:intergenic 40.0%
AGTTGTGCCTAATGTACGTT+TGG + tig0028900:38053-38072 Msa1439880:intron 40.0%
GTTGTGCCTAATGTACGTTT+GGG + tig0028900:38054-38073 Msa1439880:intron 40.0%
!! TTTGCTCTTGCTTTTGCGTT+TGG - tig0028900:38080-38099 None:intergenic 40.0%
AAACGCAAAAGCAAGAGCAA+AGG + tig0028900:38079-38098 Msa1439880:intron 40.0%
TTGAGTATGGCTCATAGACA+CGG - tig0028900:38138-38157 None:intergenic 40.0%
! ATTTGAGTTCCAATCTTGGC+TGG + tig0028900:38179-38198 Msa1439880:intron 40.0%
AGTCAAACGTCATACTACCA+AGG + tig0028900:38234-38253 Msa1439880:intron 40.0%
TGTTCATGTTACACGGAAGT+TGG + tig0028900:38607-38626 Msa1439880:CDS 40.0%
TAATATTGGGAATGTTGCGC+TGG - tig0028900:38641-38660 None:intergenic 40.0%
! GTGGAAGCATGTAAAGTTTC+TGG - tig0028900:38730-38749 None:intergenic 40.0%
CAATCCTGTCATGAAATCTG+TGG - tig0028900:38749-38768 None:intergenic 40.0%
AAACCAAATGCTGAGAGGAA+GGG - tig0028900:38826-38845 None:intergenic 40.0%
AAAACCAAATGCTGAGAGGA+AGG - tig0028900:38827-38846 None:intergenic 40.0%
AGAGAAAACCAAATGCTGAG+AGG - tig0028900:38831-38850 None:intergenic 40.0%
TCGTGAGAATAGTCATGTCA+TGG + tig0028900:38854-38873 Msa1439880:CDS 40.0%
TGGTATCCAAAACTTCCAGT+TGG + tig0028900:38874-38893 Msa1439880:CDS 40.0%
ACATACGGAAACTTTCCAAC+TGG - tig0028900:38892-38911 None:intergenic 40.0%
! GAAATATTAGTGGGTCCACA+AGG + tig0028900:39027-39046 Msa1439880:CDS 40.0%
AGGAGAACAAGTAATCCTTG+TGG - tig0028900:39045-39064 None:intergenic 40.0%
ATTTACACTTGCACTCATCC+TGG + tig0028900:39192-39211 Msa1439880:three_prime_UTR 40.0%
AGACAGTAACCAGATAAGGA+GGG - tig0028900:37226-37245 None:intergenic 40.0%
AAGACAGTAACCAGATAAGG+AGG - tig0028900:37227-37246 None:intergenic 40.0%
GTCTTAGTGACCAAAGACAA+TGG + tig0028900:37242-37261 Msa1439880:exon 40.0%
TAATCTCAACTCCTTCCATG+CGG + tig0028900:37284-37303 Msa1439880:CDS 40.0%
TTGGCAGGCTTGAATATTGA+AGG - tig0028900:37422-37441 None:intergenic 40.0%
ATAGACGCCAAAGCCAAAAT+TGG - tig0028900:37441-37460 None:intergenic 40.0%
! GTTTCTATGGCTACTAGCTT+TGG + tig0028900:37713-37732 Msa1439880:intron 40.0%
!! TAGCTTTGGCATAATGCTAG+TGG + tig0028900:37727-37746 Msa1439880:intron 40.0%
! AGCTTTGGCATAATGCTAGT+GGG + tig0028900:37728-37747 Msa1439880:intron 40.0%
TTGCAAACGTAGACACACTT+GGG - tig0028900:37875-37894 None:intergenic 40.0%
!! AGGCACAACTTTTTGTTGTG+GGG - tig0028900:38043-38062 None:intergenic 40.0%
AGTTGTGCCTAATGTACGTT+TGG + tig0028900:38053-38072 Msa1439880:intron 40.0%
GTTGTGCCTAATGTACGTTT+GGG + tig0028900:38054-38073 Msa1439880:intron 40.0%
!! TTTGCTCTTGCTTTTGCGTT+TGG - tig0028900:38080-38099 None:intergenic 40.0%
AAACGCAAAAGCAAGAGCAA+AGG + tig0028900:38079-38098 Msa1439880:intron 40.0%
TTGAGTATGGCTCATAGACA+CGG - tig0028900:38138-38157 None:intergenic 40.0%
! ATTTGAGTTCCAATCTTGGC+TGG + tig0028900:38179-38198 Msa1439880:intron 40.0%
AGTCAAACGTCATACTACCA+AGG + tig0028900:38234-38253 Msa1439880:intron 40.0%
TGTTCATGTTACACGGAAGT+TGG + tig0028900:38607-38626 Msa1439880:CDS 40.0%
TAATATTGGGAATGTTGCGC+TGG - tig0028900:38641-38660 None:intergenic 40.0%
! GTGGAAGCATGTAAAGTTTC+TGG - tig0028900:38730-38749 None:intergenic 40.0%
CAATCCTGTCATGAAATCTG+TGG - tig0028900:38749-38768 None:intergenic 40.0%
AAACCAAATGCTGAGAGGAA+GGG - tig0028900:38826-38845 None:intergenic 40.0%
AAAACCAAATGCTGAGAGGA+AGG - tig0028900:38827-38846 None:intergenic 40.0%
AGAGAAAACCAAATGCTGAG+AGG - tig0028900:38831-38850 None:intergenic 40.0%
TCGTGAGAATAGTCATGTCA+TGG + tig0028900:38854-38873 Msa1439880:CDS 40.0%
TGGTATCCAAAACTTCCAGT+TGG + tig0028900:38874-38893 Msa1439880:CDS 40.0%
ACATACGGAAACTTTCCAAC+TGG - tig0028900:38892-38911 None:intergenic 40.0%
! GAAATATTAGTGGGTCCACA+AGG + tig0028900:39027-39046 Msa1439880:CDS 40.0%
AGGAGAACAAGTAATCCTTG+TGG - tig0028900:39045-39064 None:intergenic 40.0%
ATTTACACTTGCACTCATCC+TGG + tig0028900:39192-39211 Msa1439880:three_prime_UTR 40.0%
GATAAGGTTCCCTCCTTATC+TGG + tig0028900:37214-37233 Msa1439880:five_prime_UTR 45.0%
AATCTCAACTCCTTCCATGC+GGG + tig0028900:37285-37304 Msa1439880:CDS 45.0%
!!! AAGCCTGCCAATTTTGGCTT+TGG + tig0028900:37431-37450 Msa1439880:CDS 45.0%
GTTGCAAACGTAGACACACT+TGG - tig0028900:37876-37895 None:intergenic 45.0%
! TTTGTTGTGGGGATGAGAGT+GGG - tig0028900:38032-38051 None:intergenic 45.0%
!! TTTTGTTGTGGGGATGAGAG+TGG - tig0028900:38033-38052 None:intergenic 45.0%
GTTTGGCCCAAACGTACATT+AGG - tig0028900:38063-38082 None:intergenic 45.0%
AGGATAGTTCCAGCCAAGAT+TGG - tig0028900:38191-38210 None:intergenic 45.0%
ATCTTGGCTGGAACTATCCT+TGG + tig0028900:38191-38210 Msa1439880:intron 45.0%
ACTGAACTGTTGCATGGGAA+AGG - tig0028900:38334-38353 None:intergenic 45.0%
CGACTAGTACCAGTAGGATT+AGG - tig0028900:38390-38409 None:intergenic 45.0%
CCAAACACTGCTAAGCTAAC+TGG - tig0028900:38510-38529 None:intergenic 45.0%
! CCAGTTAGCTTAGCAGTGTT+TGG + tig0028900:38507-38526 Msa1439880:intron 45.0%
GCTTCCACAGATTTCATGAC+AGG + tig0028900:38742-38761 Msa1439880:CDS 45.0%
AAAGTGATTCCACCTCTTGC+TGG + tig0028900:38955-38974 Msa1439880:CDS 45.0%
TGGATGTTACTCCTGTGGTT+TGG + tig0028900:38980-38999 Msa1439880:CDS 45.0%
!! GTTACTCCTGTGGTTTGGTT+TGG + tig0028900:38985-39004 Msa1439880:CDS 45.0%
GATAAGGTTCCCTCCTTATC+TGG + tig0028900:37214-37233 Msa1439880:five_prime_UTR 45.0%
AATCTCAACTCCTTCCATGC+GGG + tig0028900:37285-37304 Msa1439880:CDS 45.0%
!!! AAGCCTGCCAATTTTGGCTT+TGG + tig0028900:37431-37450 Msa1439880:CDS 45.0%
GTTGCAAACGTAGACACACT+TGG - tig0028900:37876-37895 None:intergenic 45.0%
! TTTGTTGTGGGGATGAGAGT+GGG - tig0028900:38032-38051 None:intergenic 45.0%
!! TTTTGTTGTGGGGATGAGAG+TGG - tig0028900:38033-38052 None:intergenic 45.0%
GTTTGGCCCAAACGTACATT+AGG - tig0028900:38063-38082 None:intergenic 45.0%
AGGATAGTTCCAGCCAAGAT+TGG - tig0028900:38191-38210 None:intergenic 45.0%
ATCTTGGCTGGAACTATCCT+TGG + tig0028900:38191-38210 Msa1439880:intron 45.0%
ACTGAACTGTTGCATGGGAA+AGG - tig0028900:38334-38353 None:intergenic 45.0%
CGACTAGTACCAGTAGGATT+AGG - tig0028900:38390-38409 None:intergenic 45.0%
CCAAACACTGCTAAGCTAAC+TGG - tig0028900:38510-38529 None:intergenic 45.0%
! CCAGTTAGCTTAGCAGTGTT+TGG + tig0028900:38507-38526 Msa1439880:intron 45.0%
GCTTCCACAGATTTCATGAC+AGG + tig0028900:38742-38761 Msa1439880:CDS 45.0%
AAAGTGATTCCACCTCTTGC+TGG + tig0028900:38955-38974 Msa1439880:CDS 45.0%
TGGATGTTACTCCTGTGGTT+TGG + tig0028900:38980-38999 Msa1439880:CDS 45.0%
!! GTTACTCCTGTGGTTTGGTT+TGG + tig0028900:38985-39004 Msa1439880:CDS 45.0%
GATTGCGTCGCCATTGTCTT+TGG - tig0028900:37255-37274 None:intergenic 50.0%
AGTTACCAGTGATTCCCGCA+TGG - tig0028900:37302-37321 None:intergenic 50.0%
ACGCCAAAGCCAAAATTGGC+AGG - tig0028900:37437-37456 None:intergenic 50.0%
AATACCCCTGAACCGTACCA+TGG + tig0028900:37989-38008 Msa1439880:intron 50.0%
ATACCCCTGAACCGTACCAT+GGG + tig0028900:37990-38009 Msa1439880:intron 50.0%
ATAGCCCATGGTACGGTTCA+GGG - tig0028900:37997-38016 None:intergenic 50.0%
TGGCTCATAGACACGGAAGA+GGG - tig0028900:38131-38150 None:intergenic 50.0%
ATGGCTCATAGACACGGAAG+AGG - tig0028900:38132-38151 None:intergenic 50.0%
! GTCTTAACTCTCTGGTTCCC+GGG - tig0028900:38268-38287 None:intergenic 50.0%
! GGTCTTAACTCTCTGGTTCC+CGG - tig0028900:38269-38288 None:intergenic 50.0%
GGAACGAGAAGAGGTTCAGT+AGG - tig0028900:38928-38947 None:intergenic 50.0%
TTGCGAGTAGGAACGAGAAG+AGG - tig0028900:38937-38956 None:intergenic 50.0%
GGTGGAATCACTTTGCGAGT+AGG - tig0028900:38949-38968 None:intergenic 50.0%
GTAACATCCACACCAGCAAG+AGG - tig0028900:38970-38989 None:intergenic 50.0%
TGGTGTGGATGTTACTCCTG+TGG + tig0028900:38975-38994 Msa1439880:CDS 50.0%
AGCAGTCCAAACCAAACCAC+AGG - tig0028900:38994-39013 None:intergenic 50.0%
GAACCGCAATGGATACCACA+CGG + tig0028900:39278-39297 Msa1439880:three_prime_UTR 50.0%
GATTGCGTCGCCATTGTCTT+TGG - tig0028900:37255-37274 None:intergenic 50.0%
AGTTACCAGTGATTCCCGCA+TGG - tig0028900:37302-37321 None:intergenic 50.0%
ACGCCAAAGCCAAAATTGGC+AGG - tig0028900:37437-37456 None:intergenic 50.0%
AATACCCCTGAACCGTACCA+TGG + tig0028900:37989-38008 Msa1439880:intron 50.0%
ATACCCCTGAACCGTACCAT+GGG + tig0028900:37990-38009 Msa1439880:intron 50.0%
ATAGCCCATGGTACGGTTCA+GGG - tig0028900:37997-38016 None:intergenic 50.0%
TGGCTCATAGACACGGAAGA+GGG - tig0028900:38131-38150 None:intergenic 50.0%
ATGGCTCATAGACACGGAAG+AGG - tig0028900:38132-38151 None:intergenic 50.0%
! GTCTTAACTCTCTGGTTCCC+GGG - tig0028900:38268-38287 None:intergenic 50.0%
! GGTCTTAACTCTCTGGTTCC+CGG - tig0028900:38269-38288 None:intergenic 50.0%
GGAACGAGAAGAGGTTCAGT+AGG - tig0028900:38928-38947 None:intergenic 50.0%
TTGCGAGTAGGAACGAGAAG+AGG - tig0028900:38937-38956 None:intergenic 50.0%
GGTGGAATCACTTTGCGAGT+AGG - tig0028900:38949-38968 None:intergenic 50.0%
GTAACATCCACACCAGCAAG+AGG - tig0028900:38970-38989 None:intergenic 50.0%
TGGTGTGGATGTTACTCCTG+TGG + tig0028900:38975-38994 Msa1439880:CDS 50.0%
AGCAGTCCAAACCAAACCAC+AGG - tig0028900:38994-39013 None:intergenic 50.0%
GAACCGCAATGGATACCACA+CGG + tig0028900:39278-39297 Msa1439880:three_prime_UTR 50.0%
TCCTTCCATGCGGGAATCAC+TGG + tig0028900:37294-37313 Msa1439880:CDS 55.0%
ACCAGTGATTCCCGCATGGA+AGG - tig0028900:37298-37317 None:intergenic 55.0%
TAGCCCATGGTACGGTTCAG+GGG - tig0028900:37996-38015 None:intergenic 55.0%
GATAGCCCATGGTACGGTTC+AGG - tig0028900:37998-38017 None:intergenic 55.0%
GGCTCATAGACACGGAAGAG+GGG - tig0028900:38130-38149 None:intergenic 55.0%
GGTCCCTTCCTCTCAGCATT+TGG + tig0028900:38820-38839 Msa1439880:CDS 55.0%
GATTCCACCTCTTGCTGGTG+TGG + tig0028900:38960-38979 Msa1439880:CDS 55.0%
ACATCCACACCAGCAAGAGG+TGG - tig0028900:38967-38986 None:intergenic 55.0%
CAGCCGTGTGGTATCCATTG+CGG - tig0028900:39284-39303 None:intergenic 55.0%
ATGGATACCACACGGCTGTG+TGG + tig0028900:39286-39305 Msa1439880:three_prime_UTR 55.0%
AAACACACCACACAGCCGTG+TGG - tig0028900:39296-39315 None:intergenic 55.0%
TCCTTCCATGCGGGAATCAC+TGG + tig0028900:37294-37313 Msa1439880:CDS 55.0%
ACCAGTGATTCCCGCATGGA+AGG - tig0028900:37298-37317 None:intergenic 55.0%
TAGCCCATGGTACGGTTCAG+GGG - tig0028900:37996-38015 None:intergenic 55.0%
GATAGCCCATGGTACGGTTC+AGG - tig0028900:37998-38017 None:intergenic 55.0%
GGCTCATAGACACGGAAGAG+GGG - tig0028900:38130-38149 None:intergenic 55.0%
GGTCCCTTCCTCTCAGCATT+TGG + tig0028900:38820-38839 Msa1439880:CDS 55.0%
GATTCCACCTCTTGCTGGTG+TGG + tig0028900:38960-38979 Msa1439880:CDS 55.0%
ACATCCACACCAGCAAGAGG+TGG - tig0028900:38967-38986 None:intergenic 55.0%
CAGCCGTGTGGTATCCATTG+CGG - tig0028900:39284-39303 None:intergenic 55.0%
ATGGATACCACACGGCTGTG+TGG + tig0028900:39286-39305 Msa1439880:three_prime_UTR 55.0%
AAACACACCACACAGCCGTG+TGG - tig0028900:39296-39315 None:intergenic 55.0%
! GGATGAGAGTGGGAGTGTGG+GGG - tig0028900:38022-38041 None:intergenic 60.0%
! GGGATGAGAGTGGGAGTGTG+GGG - tig0028900:38023-38042 None:intergenic 60.0%
! GGGGATGAGAGTGGGAGTGT+GGG - tig0028900:38024-38043 None:intergenic 60.0%
TGGGGATGAGAGTGGGAGTG+TGG - tig0028900:38025-38044 None:intergenic 60.0%
TAGACACGGAAGAGGGGCGA+GGG - tig0028900:38124-38143 None:intergenic 60.0%
ATAGACACGGAAGAGGGGCG+AGG - tig0028900:38125-38144 None:intergenic 60.0%
ACTACCAAGGCCCCTTCTCC+CGG + tig0028900:38247-38266 Msa1439880:intron 60.0%
! TCTCTGGTTCCCGGGAGAAG+GGG - tig0028900:38260-38279 None:intergenic 60.0%
! CTCTCTGGTTCCCGGGAGAA+GGG - tig0028900:38261-38280 None:intergenic 60.0%
! ACTCTCTGGTTCCCGGGAGA+AGG - tig0028900:38262-38281 None:intergenic 60.0%
! GGATGAGAGTGGGAGTGTGG+GGG - tig0028900:38022-38041 None:intergenic 60.0%
! GGGATGAGAGTGGGAGTGTG+GGG - tig0028900:38023-38042 None:intergenic 60.0%
! GGGGATGAGAGTGGGAGTGT+GGG - tig0028900:38024-38043 None:intergenic 60.0%
TGGGGATGAGAGTGGGAGTG+TGG - tig0028900:38025-38044 None:intergenic 60.0%
TAGACACGGAAGAGGGGCGA+GGG - tig0028900:38124-38143 None:intergenic 60.0%
ATAGACACGGAAGAGGGGCG+AGG - tig0028900:38125-38144 None:intergenic 60.0%
ACTACCAAGGCCCCTTCTCC+CGG + tig0028900:38247-38266 Msa1439880:intron 60.0%
! TCTCTGGTTCCCGGGAGAAG+GGG - tig0028900:38260-38279 None:intergenic 60.0%
! CTCTCTGGTTCCCGGGAGAA+GGG - tig0028900:38261-38280 None:intergenic 60.0%
! ACTCTCTGGTTCCCGGGAGA+AGG - tig0028900:38262-38281 None:intergenic 60.0%
GGGGGCGATAGCCCATGGTA+CGG - tig0028900:38004-38023 None:intergenic 65.0%
AGTGTGGGGGCGATAGCCCA+TGG - tig0028900:38009-38028 None:intergenic 65.0%
CTACCAAGGCCCCTTCTCCC+GGG + tig0028900:38248-38267 Msa1439880:intron 65.0%
GGGGGCGATAGCCCATGGTA+CGG - tig0028900:38004-38023 None:intergenic 65.0%
AGTGTGGGGGCGATAGCCCA+TGG - tig0028900:38009-38028 None:intergenic 65.0%
CTACCAAGGCCCCTTCTCCC+GGG + tig0028900:38248-38267 Msa1439880:intron 65.0%
GTTCCCGGGAGAAGGGGCCT+TGG - tig0028900:38254-38273 None:intergenic 70.0%
GTTCCCGGGAGAAGGGGCCT+TGG - tig0028900:38254-38273 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0028900 gene 37181 39361 37181 ID=Msa1439880;Name=Msa1439880
tig0028900 mRNA 37181 39361 37181 ID=Msa1439880-mRNA-1;Parent=Msa1439880;Name=Msa1439880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=80|1|1|1|1|1|3|278|213
tig0028900 exon 37181 37315 37181 ID=Msa1439880-mRNA-1:exon:11963;Parent=Msa1439880-mRNA-1
tig0028900 exon 37411 37460 37411 ID=Msa1439880-mRNA-1:exon:11964;Parent=Msa1439880-mRNA-1
tig0028900 exon 38547 39361 38547 ID=Msa1439880-mRNA-1:exon:11965;Parent=Msa1439880-mRNA-1
tig0028900 five_prime_UTR 37181 37260 37181 ID=Msa1439880-mRNA-1:five_prime_utr;Parent=Msa1439880-mRNA-1
tig0028900 CDS 37261 37315 37261 ID=Msa1439880-mRNA-1:cds;Parent=Msa1439880-mRNA-1
tig0028900 CDS 37411 37460 37411 ID=Msa1439880-mRNA-1:cds;Parent=Msa1439880-mRNA-1
tig0028900 CDS 38547 39083 38547 ID=Msa1439880-mRNA-1:cds;Parent=Msa1439880-mRNA-1
tig0028900 three_prime_UTR 39084 39361 39084 ID=Msa1439880-mRNA-1:three_prime_utr;Parent=Msa1439880-mRNA-1
Gene Sequence

>Msa1439880

ATGGCGACGCAATCTTATCTTGTTAATCTCAACTCCTTCCATGCGGGAATCACTGGGCGGAATCCTTCAATATTCAAGCCTGCCAATTTTGGCTTTGGCGTCTATAAAAGTTTGAAGCATCCTACTAGAAGAAATGTAAACGGAAGTTCACGAATCATGCAATGTTGTTCATGTTACACGGAAGTTGGAGCTTCTGCCAGCGCAACATTCCCAATATTAAATGGAGCTACTGCACAGAAATGTCTTGATTTGGATGTTGACTTGAATATCTTCAAGCTTAACATGCCAGAAACTTTACATGCTTCCACAGATTTCATGACAGGATTGATGCTTGCTGATATTGATCCTGCTACTGCAAAATTAGCTATTGGATTTCTAGGTCCCTTCCTCTCAGCATTTGGTTTTCTCTTTATCGTGAGAATAGTCATGTCATGGTATCCAAAACTTCCAGTTGGAAAGTTTCCGTATGTAATAGCTTATGCTCCTACTGAACCTCTTCTCGTTCCTACTCGCAAAGTGATTCCACCTCTTGCTGGTGTGGATGTTACTCCTGTGGTTTGGTTTGGACTGCTTAGTTTTCTTAACGAAATATTAGTGGGTCCACAAGGATTACTTGTTCTCCTTTCACAACAAGTCAATTAG

Protein sequence

>Msa1439880

MATQSYLVNLNSFHAGITGRNPSIFKPANFGFGVYKSLKHPTRRNVNGSSRIMQCCSCYTEVGASASATFPILNGATAQKCLDLDVDLNIFKLNMPETLHASTDFMTGLMLADIDPATAKLAIGFLGPFLSAFGFLFIVRIVMSWYPKLPVGKFPYVIAYAPTEPLLVPTRKVIPPLAGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQVN*