AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0085230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085230 MtrunA17_Chr1g0200581 95.283 212 10 0 1 212 1 212 7.67e-134 374
Msa0085230 MtrunA17_Chr7g0271521 50.476 105 52 0 93 197 161 265 9.17e-22 90.5
Msa0085230 MtrunA17_Chr2g0307701 50.476 105 52 0 93 197 71 175 9.60e-22 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085230 AT1G35680.1 50.000 226 90 7 1 209 1 220 1.70e-53 171
Msa0085230 AT4G30930.1 46.429 112 59 1 92 202 140 251 5.91e-22 90.9

Find 72 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATGGACGATATAAATT+TGG 0.192854 1_2:-65208589 Msa0085230:CDS
CATCCGGATAAATAGCATTA+TGG 0.235579 1_2:-65208634 Msa0085230:CDS
ACAGCAGATTCAGTGGATTT+AGG 0.249346 1_2:+65210538 None:intergenic
CTGGAAAATAGCAATGTATT+TGG 0.269474 1_2:+65208401 None:intergenic
TTTATCCGGATGCGTGTATT+TGG 0.270233 1_2:+65208645 None:intergenic
ATATCGTCCATAGTAACTTT+TGG 0.287859 1_2:+65208597 None:intergenic
AAGTTCTCTCTTGTTCAAAA+TGG 0.296593 1_2:-65210728 Msa0085230:exon
GGTTTGTAAGAGTAAATAAA+TGG 0.298935 1_2:-65210795 Msa0085230:five_prime_UTR
CCTTGAATTGAAAGATTTGT+TGG 0.302811 1_2:-65208304 Msa0085230:three_prime_UTR
GTAGGAATTGGAGTGATAAT+TGG 0.305973 1_2:+65208375 None:intergenic
AGTAACAATTCAAAGTAAAT+AGG 0.311756 1_2:+65208343 None:intergenic
CCAACAAATCTTTCAATTCA+AGG 0.333576 1_2:+65208304 None:intergenic
AAGCACTACCGTAGAACTAT+TGG 0.389507 1_2:-65208945 Msa0085230:CDS
AGGCTCTTCATAGTAGGAAT+TGG 0.391862 1_2:+65208363 None:intergenic
AAATTGTTCAGTCTCCTTCA+TGG 0.399185 1_2:-65210468 Msa0085230:CDS
ATCCGGATAAATAGCATTAT+GGG 0.402240 1_2:-65208633 Msa0085230:CDS
GGCCAGGGTGAACAATATAT+TGG 0.416675 1_2:+65209811 None:intergenic
GGACTACCCAAAAGTTACTA+TGG 0.431208 1_2:-65208604 Msa0085230:CDS
ACCACAGCATTTGTTACTAC+TGG 0.436337 1_2:+65209126 None:intergenic
AGAGGATAGAGTTGAGAGAG+AGG 0.438534 1_2:-65210751 Msa0085230:five_prime_UTR
GTAAATAGGCTCTTCATAGT+AGG 0.438916 1_2:+65208357 None:intergenic
GATTCAGTGGATTTAGGAAC+GGG 0.439429 1_2:+65210544 None:intergenic
TACTGGTTTGCCAATGTAGC+AGG 0.447272 1_2:+65209143 None:intergenic
GTAAATAAATGGATAGGAAG+AGG 0.447418 1_2:-65210784 Msa0085230:five_prime_UTR
AGCCCATAATGCTATTTATC+CGG 0.454993 1_2:+65208631 None:intergenic
ATTGTAGATCGCCCTGCATA+AGG 0.455809 1_2:-65209190 Msa0085230:intron
TCAGTCTCCTTCATGGGAGA+AGG 0.458893 1_2:-65210461 Msa0085230:CDS
TGAACAACAAGCCAGCGGCC+AGG 0.470564 1_2:+65209795 None:intergenic
ACAGATACATCCTGCTACAT+TGG 0.471048 1_2:-65209153 Msa0085230:CDS
CTTGTTGTTCAGAGGCTCAA+AGG 0.473982 1_2:-65209783 Msa0085230:CDS
ACTTGAGACTCAGACTCAAC+AGG 0.480236 1_2:+65210511 None:intergenic
AATTGTTCAGTCTCCTTCAT+GGG 0.484994 1_2:-65210467 Msa0085230:CDS
GAACAACAAGCCAGCGGCCA+GGG 0.488250 1_2:+65209796 None:intergenic
TTGAGGCTTTGTTGAACAAT+GGG 0.491609 1_2:+65210657 None:intergenic
TTGGAGTGATAATTGGAGAC+TGG 0.496604 1_2:+65208382 None:intergenic
ATATGCGACAGTGGAAGATC+AGG 0.499742 1_2:-65209103 Msa0085230:intron
CAGTCTCCTTCATGGGAGAA+GGG 0.511001 1_2:-65210460 Msa0085230:CDS
CAACCAGTAAAACCTTATGC+AGG 0.515174 1_2:+65209178 None:intergenic
GCCGCTGGCTTGTTGTTCAG+AGG 0.515615 1_2:-65209791 Msa0085230:CDS
TGATGAGAAATAGAGAATTG+AGG 0.517104 1_2:+65210640 None:intergenic
ATATTGTTCACCCTGGCCGC+TGG 0.519617 1_2:-65209806 Msa0085230:CDS
TGGAAAGAGAGGTTGTGAGA+AGG 0.523157 1_2:+65210598 None:intergenic
AAATAGCATTATGGGCTATG+AGG 0.523959 1_2:-65208625 Msa0085230:CDS
TTATTGTATTCAAATACAAA+AGG 0.529558 1_2:-65208971 Msa0085230:CDS
AGGCAAGCGTTGTGAGAAAG+TGG 0.533199 1_2:+65210573 None:intergenic
AAAAGACCCTTCTCCCATGA+AGG 0.536139 1_2:+65210454 None:intergenic
TGTGAAAGAAGAACAGAGAG+TGG 0.542220 1_2:+65210681 None:intergenic
GTCTGTGTCCAATAGTTCTA+CGG 0.543286 1_2:+65208937 None:intergenic
ATTGAGGCTTTGTTGAACAA+TGG 0.545857 1_2:+65210656 None:intergenic
GACAGCCAAATACACGCATC+CGG 0.549802 1_2:-65208650 Msa0085230:intron
TTGTGAGAAGGAACACGAGA+AGG 0.551095 1_2:+65210610 None:intergenic
GTAAGAGTAAATAAATGGAT+AGG 0.553474 1_2:-65210790 Msa0085230:five_prime_UTR
TATTAGCAATCAATTTGCCA+TGG 0.553700 1_2:-65208506 Msa0085230:three_prime_UTR
TAGAACTATTGGACACAGAC+AGG 0.559177 1_2:-65208934 Msa0085230:intron
AGATTCAGTGGATTTAGGAA+CGG 0.565702 1_2:+65210543 None:intergenic
GGAAGAGGAAGAACATCAAG+AGG 0.578882 1_2:-65210769 Msa0085230:five_prime_UTR
AGCGTTGTGAGAAAGTGGAT+TGG 0.591056 1_2:+65210578 None:intergenic
AGGTGCAACAGCAGATTCAG+TGG 0.593123 1_2:+65210531 None:intergenic
CGCCAATATATTGTTCACCC+TGG 0.594986 1_2:-65209813 Msa0085230:CDS
GATAAAAGCAAAACTAACCA+TGG 0.603723 1_2:+65208489 None:intergenic
TGAGTCTGAGTCTCAAGTGT+CGG 0.608217 1_2:-65210506 Msa0085230:CDS
TGTGAGAAGGAACACGAGAA+GGG 0.611777 1_2:+65210611 None:intergenic
ACCAGTAGTAACAAATGCTG+TGG 0.613380 1_2:-65209127 Msa0085230:CDS
AGAAAGTGGATTGGAAAGAG+AGG 0.617691 1_2:+65210587 None:intergenic
AACCAGTAAAACCTTATGCA+GGG 0.620022 1_2:+65209179 None:intergenic
GTATACCTTGTCGTTAACGT+TGG 0.621234 1_2:+65209758 None:intergenic
GAAGGAACACGAGAAGGGAA+AGG 0.624230 1_2:+65210616 None:intergenic
AGGAGACTGAACAATTTGAG+AGG 0.639275 1_2:+65210474 None:intergenic
AGGTGCCAACGTTAACGACA+AGG 0.654570 1_2:-65209763 Msa0085230:intron
GATTTAGGAACGGGTAACAG+AGG 0.658715 1_2:+65210553 None:intergenic
GCCTCTGAACAACAAGCCAG+CGG 0.664752 1_2:+65209790 None:intergenic
TGCTGTGGTATATGCGACAG+TGG 0.682736 1_2:-65209112 Msa0085230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACAATATATTTAAAACTA+TGG - chr1_2:65209492-65209511 Msa0085230:intron 10.0%
!! ACCTATAAATATAATATAAA+AGG - chr1_2:65209649-65209668 Msa0085230:intron 10.0%
!! CCTATAAATATAATATAAAA+GGG - chr1_2:65209650-65209669 Msa0085230:intron 10.0%
!!! AAAAAGTTTTGATAAATAAT+TGG + chr1_2:65210208-65210227 None:intergenic 10.0%
!! ATATAAAATAGATAAAACCA+TGG + chr1_2:65208829-65208848 None:intergenic 15.0%
!!! AATATATTTAAAACTATGGT+TGG - chr1_2:65209496-65209515 Msa0085230:intron 15.0%
!!! CCCTTTTATATTATATTTAT+AGG + chr1_2:65209653-65209672 None:intergenic 15.0%
!! TATAATATAAAAGGGTTTAA+TGG - chr1_2:65209658-65209677 Msa0085230:intron 15.0%
!! AAAGTATATTATAAGAAACT+AGG - chr1_2:65209682-65209701 Msa0085230:intron 15.0%
!! TTATTGTATTCAAATACAAA+AGG - chr1_2:65210115-65210134 Msa0085230:intron 15.0%
!! TTTGAACAATTCAAACAAAA+GGG + chr1_2:65208718-65208737 None:intergenic 20.0%
!!! TTTTGAACAATTCAAACAAA+AGG + chr1_2:65208719-65208738 None:intergenic 20.0%
!! AAAAATATGCAAACTCAATT+GGG + chr1_2:65208796-65208815 None:intergenic 20.0%
!!! CATTTATCTGAAATTATTTG+TGG - chr1_2:65208856-65208875 Msa0085230:intron 20.0%
!! TTGTTTGTAATTGTATTGTT+GGG - chr1_2:65209122-65209141 Msa0085230:CDS 20.0%
!!! TAGGTATTTGTTTATTGTTT+TGG - chr1_2:65209172-65209191 Msa0085230:CDS 20.0%
!!! AGGTATTTGTTTATTGTTTT+GGG - chr1_2:65209173-65209192 Msa0085230:CDS 20.0%
!! GCTAATCATTACTTAATAAA+TGG + chr1_2:65209466-65209485 None:intergenic 20.0%
!! ATGAATGAAATTCAAATCAT+TGG - chr1_2:65209743-65209762 Msa0085230:intron 20.0%
!!! TGTACATTAATTTTAACTCT+TGG - chr1_2:65209872-65209891 Msa0085230:intron 20.0%
!! AACATTCATAAAAAATGACA+TGG + chr1_2:65210374-65210393 None:intergenic 20.0%
!! AGTAACAATTCAAAGTAAAT+AGG + chr1_2:65210746-65210765 None:intergenic 20.0%
! GGTTTGTAAGAGTAAATAAA+TGG - chr1_2:65208291-65208310 Msa0085230:three_prime_UTR 25.0%
! GTAAGAGTAAATAAATGGAT+AGG - chr1_2:65208296-65208315 Msa0085230:three_prime_UTR 25.0%
!!! CTTTTTTTTAATGTTGAGTG+TGG - chr1_2:65208683-65208702 Msa0085230:intron 25.0%
! TGTTAATCTAGATTGTTCTA+TGG - chr1_2:65208760-65208779 Msa0085230:intron 25.0%
! CAAAAATATGCAAACTCAAT+TGG + chr1_2:65208797-65208816 None:intergenic 25.0%
!! CAATTGAGTTTGCATATTTT+TGG - chr1_2:65208795-65208814 Msa0085230:intron 25.0%
! TTAGGAATGGTTAAGTAAAA+TGG - chr1_2:65208901-65208920 Msa0085230:intron 25.0%
! TAGGAATGGTTAAGTAAAAT+GGG - chr1_2:65208902-65208921 Msa0085230:intron 25.0%
! GATAGACTTTACTTATGTTT+CGG + chr1_2:65208974-65208993 None:intergenic 25.0%
!! ATATAGGTTGAAACAATCAT+TGG + chr1_2:65208996-65209015 None:intergenic 25.0%
!!! TCAACCTATATTTTTGAACT+TGG - chr1_2:65209005-65209024 Msa0085230:intron 25.0%
!!! CAACCTATATTTTTGAACTT+GGG - chr1_2:65209006-65209025 Msa0085230:intron 25.0%
! GTTGTTTGTAATTGTATTGT+TGG - chr1_2:65209121-65209140 Msa0085230:CDS 25.0%
!!! GGTATTTGTTTATTGTTTTG+GGG - chr1_2:65209174-65209193 Msa0085230:CDS 25.0%
!!! TTGTGTTGTTTTGTTTAGAT+TGG - chr1_2:65209246-65209265 Msa0085230:intron 25.0%
! GAAATAATGAGTTTAACGAA+TGG + chr1_2:65209377-65209396 None:intergenic 25.0%
!! ATAAATGGTAGCAATTTTAG+AGG + chr1_2:65209451-65209470 None:intergenic 25.0%
!! CTATCATGATGTCAATTTTA+CGG + chr1_2:65209562-65209581 None:intergenic 25.0%
! AAGTGGCAAATTATAATCAT+TGG + chr1_2:65209777-65209796 None:intergenic 25.0%
! AACAGTAAATGTTCAGATAA+TGG + chr1_2:65209827-65209846 None:intergenic 25.0%
!!! TTTTAGCTTTTTTTCCTAAC+AGG + chr1_2:65210037-65210056 None:intergenic 25.0%
! TAAAACAAAATGGTTAAGGT+AGG + chr1_2:65210073-65210092 None:intergenic 25.0%
! GCATTAAAACAAAATGGTTA+AGG + chr1_2:65210077-65210096 None:intergenic 25.0%
!!! TAACCATTTTGTTTTAATGC+AGG - chr1_2:65210077-65210096 Msa0085230:intron 25.0%
!!! AACCATTTTGTTTTAATGCA+GGG - chr1_2:65210078-65210097 Msa0085230:intron 25.0%
! CATTCATCATATATACAACA+TGG + chr1_2:65210327-65210346 None:intergenic 25.0%
! TCAAATCAAACATCAAATTC+TGG + chr1_2:65210404-65210423 None:intergenic 25.0%
! TACTATGGACGATATAAATT+TGG - chr1_2:65210497-65210516 Msa0085230:CDS 25.0%
GTAAATAAATGGATAGGAAG+AGG - chr1_2:65208302-65208321 Msa0085230:three_prime_UTR 30.0%
AAGTTCTCTCTTGTTCAAAA+TGG - chr1_2:65208358-65208377 Msa0085230:three_prime_UTR 30.0%
TGATGAGAAATAGAGAATTG+AGG + chr1_2:65208449-65208468 None:intergenic 30.0%
!! TTGTAATGGTGAGTTTTTAG+TGG - chr1_2:65208660-65208679 Msa0085230:intron 30.0%
! TTTTAATGTTGAGTGTGGAT+TGG - chr1_2:65208688-65208707 Msa0085230:intron 30.0%
TTTAATGTTGAGTGTGGATT+GGG - chr1_2:65208689-65208708 Msa0085230:intron 30.0%
AGTATTGCACATTCAAGATT+AGG - chr1_2:65208883-65208902 Msa0085230:intron 30.0%
GAACCCAAGTTCAAAAATAT+AGG + chr1_2:65209012-65209031 None:intergenic 30.0%
TCAATTATAGACGAATCACT+CGG + chr1_2:65209037-65209056 None:intergenic 30.0%
!!! TGTTGTTTTGTTTAGATTGG+TGG - chr1_2:65209249-65209268 Msa0085230:intron 30.0%
!! TTTAAAACTATGGTTGGCTT+AGG - chr1_2:65209502-65209521 Msa0085230:intron 30.0%
TATGGTCAAAATACCTCTTT+AGG + chr1_2:65209708-65209727 None:intergenic 30.0%
CATTCATTTCTCACATCATA+TGG + chr1_2:65209726-65209745 None:intergenic 30.0%
AATCGTTTCAAAGAGAAAAG+TGG + chr1_2:65209794-65209813 None:intergenic 30.0%
AACCCTGCATTAAAACAAAA+TGG + chr1_2:65210083-65210102 None:intergenic 30.0%
ATTGGATTGCACAAAGTAAA+AGG + chr1_2:65210190-65210209 None:intergenic 30.0%
TGAAAGGAGCTTAGAAATAT+GGG - chr1_2:65210298-65210317 Msa0085230:intron 30.0%
ATCCGGATAAATAGCATTAT+GGG - chr1_2:65210453-65210472 Msa0085230:CDS 30.0%
! TATCGTCCATAGTAACTTTT+GGG + chr1_2:65210491-65210510 None:intergenic 30.0%
! ATATCGTCCATAGTAACTTT+TGG + chr1_2:65210492-65210511 None:intergenic 30.0%
TATTAGCAATCAATTTGCCA+TGG - chr1_2:65210580-65210599 Msa0085230:CDS 30.0%
GATAAAAGCAAAACTAACCA+TGG + chr1_2:65210600-65210619 None:intergenic 30.0%
!!! GGTTAGTTTTGCTTTTATCA+TGG - chr1_2:65210601-65210620 Msa0085230:CDS 30.0%
!! AGTTTTGCTTTTATCATGGT+TGG - chr1_2:65210605-65210624 Msa0085230:CDS 30.0%
CTGGAAAATAGCAATGTATT+TGG + chr1_2:65210688-65210707 None:intergenic 30.0%
CCAACAAATCTTTCAATTCA+AGG + chr1_2:65210785-65210804 None:intergenic 30.0%
CCTTGAATTGAAAGATTTGT+TGG - chr1_2:65210782-65210801 Msa0085230:five_prime_UTR 30.0%
!! TTGAGGCTTTGTTGAACAAT+GGG + chr1_2:65208432-65208451 None:intergenic 35.0%
!! ATTGAGGCTTTGTTGAACAA+TGG + chr1_2:65208433-65208452 None:intergenic 35.0%
! AGATTCAGTGGATTTAGGAA+CGG + chr1_2:65208546-65208565 None:intergenic 35.0%
AAATTGTTCAGTCTCCTTCA+TGG - chr1_2:65208618-65208637 Msa0085230:CDS 35.0%
AATTGTTCAGTCTCCTTCAT+GGG - chr1_2:65208619-65208638 Msa0085230:CDS 35.0%
! CAAAAGTTACATGCTTTGAG+TGG - chr1_2:65208734-65208753 Msa0085230:intron 35.0%
!!! TATTTTTGGCTCTATCACCA+TGG - chr1_2:65208809-65208828 Msa0085230:intron 35.0%
TGCACATTCAAGATTAGGAA+TGG - chr1_2:65208888-65208907 Msa0085230:intron 35.0%
CAATTATAGACGAATCACTC+GGG + chr1_2:65209036-65209055 None:intergenic 35.0%
TCAATCACGTAGCTAGTAAA+AGG - chr1_2:65209076-65209095 Msa0085230:intron 35.0%
CAATCACGTAGCTAGTAAAA+GGG - chr1_2:65209077-65209096 Msa0085230:intron 35.0%
!! AGCTAGTAAAAGGGTTAGTT+TGG - chr1_2:65209086-65209105 Msa0085230:intron 35.0%
!! AGTAAAAGGGTTAGTTTGGA+TGG - chr1_2:65209090-65209109 Msa0085230:intron 35.0%
!! AGTTTGTTGGGTTGGTAAAT+AGG - chr1_2:65209153-65209172 Msa0085230:CDS 35.0%
TGCTTAAGGAGCAAAGAAAA+TGG + chr1_2:65209425-65209444 None:intergenic 35.0%
!! AATTTTAGAGGCAGTGCTTA+AGG + chr1_2:65209439-65209458 None:intergenic 35.0%
! CAATTTTACGGAACCAGAAA+GGG + chr1_2:65209550-65209569 None:intergenic 35.0%
! TCAATTTTACGGAACCAGAA+AGG + chr1_2:65209551-65209570 None:intergenic 35.0%
ACTACTAATGACCTGAACTA+TGG - chr1_2:65209620-65209639 Msa0085230:intron 35.0%
CTACTAATGACCTGAACTAT+GGG - chr1_2:65209621-65209640 Msa0085230:intron 35.0%
ATAAGAAACTAGGCCTAAAG+AGG - chr1_2:65209692-65209711 Msa0085230:intron 35.0%
AACCAGTAAAACCTTATGCA+GGG + chr1_2:65209910-65209929 None:intergenic 35.0%
TTACCCTTAGACTTTCTGAA+AGG - chr1_2:65210282-65210301 Msa0085230:intron 35.0%
CTGAAAGGAGCTTAGAAATA+TGG - chr1_2:65210297-65210316 Msa0085230:intron 35.0%
TATGATGAATGTTTGCCTGT+AGG - chr1_2:65210336-65210355 Msa0085230:intron 35.0%
CATCCGGATAAATAGCATTA+TGG - chr1_2:65210452-65210471 Msa0085230:CDS 35.0%
! AGCCCATAATGCTATTTATC+CGG + chr1_2:65210458-65210477 None:intergenic 35.0%
! AAATAGCATTATGGGCTATG+AGG - chr1_2:65210461-65210480 Msa0085230:CDS 35.0%
GTAGGAATTGGAGTGATAAT+TGG + chr1_2:65210714-65210733 None:intergenic 35.0%
GTAAATAGGCTCTTCATAGT+AGG + chr1_2:65210732-65210751 None:intergenic 35.0%
TGTGAAAGAAGAACAGAGAG+TGG + chr1_2:65208408-65208427 None:intergenic 40.0%
!! AGAAAGTGGATTGGAAAGAG+AGG + chr1_2:65208502-65208521 None:intergenic 40.0%
! GATTCAGTGGATTTAGGAAC+GGG + chr1_2:65208545-65208564 None:intergenic 40.0%
! ACAGCAGATTCAGTGGATTT+AGG + chr1_2:65208551-65208570 None:intergenic 40.0%
AGGAGACTGAACAATTTGAG+AGG + chr1_2:65208615-65208634 None:intergenic 40.0%
!!! GGGTCTTTTTGCTGTTGTAA+TGG - chr1_2:65208646-65208665 Msa0085230:CDS 40.0%
GTATACCTTGTCGTTAACGT+TGG + chr1_2:65209331-65209350 None:intergenic 40.0%
AATGACCTGAACTATGGGTT+AGG - chr1_2:65209626-65209645 Msa0085230:intron 40.0%
CAACCAGTAAAACCTTATGC+AGG + chr1_2:65209911-65209930 None:intergenic 40.0%
! CTGCATAAGGTTTTACTGGT+TGG - chr1_2:65209909-65209928 Msa0085230:intron 40.0%
ACAGATACATCCTGCTACAT+TGG - chr1_2:65209933-65209952 Msa0085230:intron 40.0%
ACCAGTAGTAACAAATGCTG+TGG - chr1_2:65209959-65209978 Msa0085230:intron 40.0%
! ACCACAGCATTTGTTACTAC+TGG + chr1_2:65209963-65209982 None:intergenic 40.0%
!! TCTGCTTTTGTTCTCCTGTT+AGG - chr1_2:65210020-65210039 Msa0085230:intron 40.0%
AAGCACTACCGTAGAACTAT+TGG - chr1_2:65210141-65210160 Msa0085230:intron 40.0%
! GTCTGTGTCCAATAGTTCTA+CGG + chr1_2:65210152-65210171 None:intergenic 40.0%
TAGAACTATTGGACACAGAC+AGG - chr1_2:65210152-65210171 Msa0085230:intron 40.0%
GCGATTGAAATGTCTATGTG+TGG - chr1_2:65210228-65210247 Msa0085230:intron 40.0%
TGAAATGTCTATGTGTGGCT+TGG - chr1_2:65210233-65210252 Msa0085230:intron 40.0%
GAAATGTCTATGTGTGGCTT+GGG - chr1_2:65210234-65210253 Msa0085230:intron 40.0%
! TGGCTTGGGAACTAATTCTT+TGG - chr1_2:65210248-65210267 Msa0085230:intron 40.0%
GGCTTGGGAACTAATTCTTT+GGG - chr1_2:65210249-65210268 Msa0085230:intron 40.0%
GCTTGGGAACTAATTCTTTG+GGG - chr1_2:65210250-65210269 Msa0085230:intron 40.0%
GCTCCTTTCAGAAAGTCTAA+GGG + chr1_2:65210288-65210307 None:intergenic 40.0%
AGCTCCTTTCAGAAAGTCTA+AGG + chr1_2:65210289-65210308 None:intergenic 40.0%
TTTATCCGGATGCGTGTATT+TGG + chr1_2:65210444-65210463 None:intergenic 40.0%
GGACTACCCAAAAGTTACTA+TGG - chr1_2:65210482-65210501 Msa0085230:CDS 40.0%
TTGGAGTGATAATTGGAGAC+TGG + chr1_2:65210707-65210726 None:intergenic 40.0%
AGGCTCTTCATAGTAGGAAT+TGG + chr1_2:65210726-65210745 None:intergenic 40.0%
GGAAGAGGAAGAACATCAAG+AGG - chr1_2:65208317-65208336 Msa0085230:three_prime_UTR 45.0%
AGAGGATAGAGTTGAGAGAG+AGG - chr1_2:65208335-65208354 Msa0085230:three_prime_UTR 45.0%
TGTGAGAAGGAACACGAGAA+GGG + chr1_2:65208478-65208497 None:intergenic 45.0%
TTGTGAGAAGGAACACGAGA+AGG + chr1_2:65208479-65208498 None:intergenic 45.0%
TGGAAAGAGAGGTTGTGAGA+AGG + chr1_2:65208491-65208510 None:intergenic 45.0%
AGCGTTGTGAGAAAGTGGAT+TGG + chr1_2:65208511-65208530 None:intergenic 45.0%
GATTTAGGAACGGGTAACAG+AGG + chr1_2:65208536-65208555 None:intergenic 45.0%
ACTTGAGACTCAGACTCAAC+AGG + chr1_2:65208578-65208597 None:intergenic 45.0%
TGAGTCTGAGTCTCAAGTGT+CGG - chr1_2:65208580-65208599 Msa0085230:CDS 45.0%
AAAAGACCCTTCTCCCATGA+AGG + chr1_2:65208635-65208654 None:intergenic 45.0%
TATGTTTCGGCCAAACTCCA+GGG + chr1_2:65208961-65208980 None:intergenic 45.0%
TTATGTTTCGGCCAAACTCC+AGG + chr1_2:65208962-65208981 None:intergenic 45.0%
GCTACGTGATTGAGCTTAAG+TGG + chr1_2:65209069-65209088 None:intergenic 45.0%
! TTGGGCTACTTCGAGTTTGT+TGG - chr1_2:65209140-65209159 Msa0085230:CDS 45.0%
! TGGGCTACTTCGAGTTTGTT+GGG - chr1_2:65209141-65209160 Msa0085230:CDS 45.0%
!! CTACTTCGAGTTTGTTGGGT+TGG - chr1_2:65209145-65209164 Msa0085230:CDS 45.0%
CGCCAATATATTGTTCACCC+TGG - chr1_2:65209273-65209292 Msa0085230:intron 45.0%
GGCCAGGGTGAACAATATAT+TGG + chr1_2:65209278-65209297 None:intergenic 45.0%
!! CTTGTTGTTCAGAGGCTCAA+AGG - chr1_2:65209303-65209322 Msa0085230:intron 45.0%
TAGGTCCTAACCCATAGTTC+AGG + chr1_2:65209634-65209653 None:intergenic 45.0%
ATTGTAGATCGCCCTGCATA+AGG - chr1_2:65209896-65209915 Msa0085230:intron 45.0%
!! TACTGGTTTGCCAATGTAGC+AGG + chr1_2:65209946-65209965 None:intergenic 45.0%
ATATGCGACAGTGGAAGATC+AGG - chr1_2:65209983-65210002 Msa0085230:intron 45.0%
GAAGGAACACGAGAAGGGAA+AGG + chr1_2:65208473-65208492 None:intergenic 50.0%
! AGGCAAGCGTTGTGAGAAAG+TGG + chr1_2:65208516-65208535 None:intergenic 50.0%
AGGTGCAACAGCAGATTCAG+TGG + chr1_2:65208558-65208577 None:intergenic 50.0%
TCAGTCTCCTTCATGGGAGA+AGG - chr1_2:65208625-65208644 Msa0085230:CDS 50.0%
CAGTCTCCTTCATGGGAGAA+GGG - chr1_2:65208626-65208645 Msa0085230:CDS 50.0%
AGGTGCCAACGTTAACGACA+AGG - chr1_2:65209323-65209342 Msa0085230:intron 50.0%
! CGCCCTGCATAAGGTTTTAC+TGG - chr1_2:65209905-65209924 Msa0085230:intron 50.0%
TGCTGTGGTATATGCGACAG+TGG - chr1_2:65209974-65209993 Msa0085230:intron 50.0%
TGTTTGCCTGTAGGCACATG+AGG - chr1_2:65210345-65210364 Msa0085230:intron 50.0%
GACAGCCAAATACACGCATC+CGG - chr1_2:65210436-65210455 Msa0085230:intron 50.0%
TTGTCTTATCCCTCCGACCC+TGG - chr1_2:65208941-65208960 Msa0085230:CDS 55.0%
TTTCGGCCAAACTCCAGGGT+CGG + chr1_2:65208957-65208976 None:intergenic 55.0%
ATATTGTTCACCCTGGCCGC+TGG - chr1_2:65209280-65209299 Msa0085230:intron 55.0%
GCCTCTGAACAACAAGCCAG+CGG + chr1_2:65209299-65209318 None:intergenic 55.0%
AGTGCTTCCTGCTCCCTTTC+TGG - chr1_2:65209534-65209553 Msa0085230:intron 55.0%
TACGGAACCAGAAAGGGAGC+AGG + chr1_2:65209544-65209563 None:intergenic 55.0%
TGGAAGCCTCATGTGCCTAC+AGG + chr1_2:65210354-65210373 None:intergenic 55.0%
ATCCCTCCGACCCTGGAGTT+TGG - chr1_2:65208948-65208967 Msa0085230:CDS 60.0%
GAACAACAAGCCAGCGGCCA+GGG + chr1_2:65209293-65209312 None:intergenic 60.0%
TGAACAACAAGCCAGCGGCC+AGG + chr1_2:65209294-65209313 None:intergenic 60.0%
!! GCCGCTGGCTTGTTGTTCAG+AGG - chr1_2:65209295-65209314 Msa0085230:intron 60.0%
GGCCAAACTCCAGGGTCGGA+GGG + chr1_2:65208953-65208972 None:intergenic 65.0%
CGGCCAAACTCCAGGGTCGG+AGG + chr1_2:65208954-65208973 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 65208288 65210820 65208288 ID=Msa0085230;Name=Msa0085230
chr1_2 mRNA 65208288 65210820 65208288 ID=Msa0085230-mRNA-1;Parent=Msa0085230;Name=Msa0085230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89|1|1|1|1|1|5|290|212
chr1_2 exon 65208288 65208667 65208288 ID=Msa0085230-mRNA-1:exon:22028;Parent=Msa0085230-mRNA-1
chr1_2 exon 65208935 65209009 65208935 ID=Msa0085230-mRNA-1:exon:22027;Parent=Msa0085230-mRNA-1
chr1_2 exon 65209104 65209205 65209104 ID=Msa0085230-mRNA-1:exon:22026;Parent=Msa0085230-mRNA-1
chr1_2 exon 65209764 65209844 65209764 ID=Msa0085230-mRNA-1:exon:22025;Parent=Msa0085230-mRNA-1
chr1_2 exon 65210441 65210820 65210441 ID=Msa0085230-mRNA-1:exon:22024;Parent=Msa0085230-mRNA-1
chr1_2 five_prime_UTR 65210732 65210820 65210732 ID=Msa0085230-mRNA-1:five_prime_utr;Parent=Msa0085230-mRNA-1
chr1_2 CDS 65210441 65210731 65210441 ID=Msa0085230-mRNA-1:cds;Parent=Msa0085230-mRNA-1
chr1_2 CDS 65209764 65209844 65209764 ID=Msa0085230-mRNA-1:cds;Parent=Msa0085230-mRNA-1
chr1_2 CDS 65209104 65209205 65209104 ID=Msa0085230-mRNA-1:cds;Parent=Msa0085230-mRNA-1
chr1_2 CDS 65208935 65209009 65208935 ID=Msa0085230-mRNA-1:cds;Parent=Msa0085230-mRNA-1
chr1_2 CDS 65208578 65208667 65208578 ID=Msa0085230-mRNA-1:cds;Parent=Msa0085230-mRNA-1
chr1_2 three_prime_UTR 65208288 65208577 65208288 ID=Msa0085230-mRNA-1:three_prime_utr;Parent=Msa0085230-mRNA-1
Gene Sequence

>Msa0085230

ATGGCTTCTGCAACTGCTTCTACTCTTTCCACTCTCTGTTCTTCTTTCACAACCCATTGTTCAACAAAGCCTCAATTCTCTATTTCTCATCAACCTTTCCCTTCTCGTGTTCCTTCTCACAACCTCTCTTTCCAATCCACTTTCTCACAACGCTTGCCTCTGTTACCCGTTCCTAAATCCACTGAATCTGCTGTTGCACCTGTTGAGTCTGAGTCTCAAGTGTCGGAGTCTGAATCCTCTCAAATTGTTCAGTCTCCTTCATGGGAGAAGGGTCTTTTTGCTGTTGTAATGATTGGTGGACGCCAATATATTGTTCACCCTGGCCGCTGGCTTGTTGTTCAGAGGCTCAAAGGTGCCAACGTTAACGACAAGATCGCCCTGCATAAGGTTTTACTGGTTGGAACAGATACATCCTGCTACATTGGCAAACCAGTAGTAACAAATGCTGTGGTATATGCGACAGTGGAAGATCAGGGTTTAGACAACAAAGTTATTGTATTCAAATACAAAAGGAAGAAGCACTACCGTAGAACTATTGGACACAGACAGCCAAATACACGCATCCGGATAAATAGCATTATGGGCTATGAGGACTACCCAAAAGTTACTATGGACGATATAAATTTGGAATCATCATGA

Protein sequence

>Msa0085230

MASATASTLSTLCSSFTTHCSTKPQFSISHQPFPSRVPSHNLSFQSTFSQRLPLLPVPKSTESAVAPVESESQVSESESSQIVQSPSWEKGLFAVVMIGGRQYIVHPGRWLVVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPVVTNAVVYATVEDQGLDNKVIVFKYKRKKHYRRTIGHRQPNTRIRINSIMGYEDYPKVTMDDINLESS*