AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0147550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0147550 MtrunA17_Chr1g0156901 96.486 370 13 0 1 370 1 370 0.0 731
Msa0147550 MtrunA17_Chr1g0156911 75.989 354 85 0 18 371 5 358 0.0 580
Msa0147550 MtrunA17_Chr1g0156891 72.286 350 96 1 23 371 16 365 0.0 547
Msa0147550 MtrunA17_Chr1g0156921 62.953 359 132 1 14 371 6 364 5.73e-172 483
Msa0147550 MtrunA17_Chr3g0142921 65.084 358 121 2 18 371 1 358 6.36e-172 483
Msa0147550 MtrunA17_Chr1g0156931 60.724 359 140 1 13 371 4 361 1.75e-169 477
Msa0147550 MtrunA17_Chr3g0142941 63.393 336 123 0 35 370 32 367 1.02e-164 465
Msa0147550 MtrunA17_Chr8g0371491 49.422 346 174 1 27 371 13 358 1.26e-125 365
Msa0147550 MtrunA17_Chr5g0405821 50.829 362 172 5 13 371 9 367 1.67e-125 365
Msa0147550 MtrunA17_Chr5g0405831 50.432 347 168 4 27 371 22 366 9.22e-124 361
Msa0147550 MtrunA17_Chr8g0371471 49.138 348 172 3 29 371 16 363 6.11e-120 351
Msa0147550 MtrunA17_Chr8g0371481 48.711 349 173 4 29 371 16 364 7.57e-117 343
Msa0147550 MtrunA17_Chr1g0157001 43.840 349 190 3 22 366 5 351 6.06e-96 290
Msa0147550 MtrunA17_Chr3g0105401 38.462 351 214 2 23 371 1 351 5.36e-91 277
Msa0147550 MtrunA17_Chr5g0438621 39.645 338 195 2 18 354 6 335 2.39e-90 275
Msa0147550 MtrunA17_Chr3g0120861 41.284 327 187 3 48 371 36 360 2.10e-89 273
Msa0147550 MtrunA17_Chr5g0432101 42.547 322 177 3 50 368 33 349 4.90e-88 270
Msa0147550 MtrunA17_Chr5g0438631 39.650 343 195 4 17 356 3 336 2.75e-87 267
Msa0147550 MtrunA17_Chr4g0046151 41.009 317 179 2 50 358 36 352 1.53e-86 266
Msa0147550 MtrunA17_Chr5g0438641 40.308 325 193 1 48 371 30 354 7.25e-85 261
Msa0147550 MtrunA17_Chr2g0320671 39.881 336 198 2 29 363 12 344 1.23e-84 261
Msa0147550 MtrunA17_Chr8g0341001 41.325 317 184 2 45 359 27 343 2.23e-83 258
Msa0147550 MtrunA17_Chr2g0330781 40.252 318 188 2 48 363 29 346 1.17e-81 253
Msa0147550 MtrunA17_Chr2g0283191 38.941 321 186 4 48 358 36 356 2.26e-81 253
Msa0147550 MtrunA17_Chr5g0437421 38.994 318 186 3 49 359 31 347 1.28e-77 243
Msa0147550 MtrunA17_Chr4g0027521 37.654 324 198 2 48 367 25 348 1.25e-74 235
Msa0147550 MtrunA17_Chr8g0380041 37.419 310 186 5 48 353 29 334 6.22e-65 210
Msa0147550 MtrunA17_Chr1g0182811 38.750 320 185 5 50 362 33 348 1.05e-63 207
Msa0147550 MtrunA17_Chr2g0285061 36.129 310 191 5 48 353 30 336 2.31e-62 204
Msa0147550 MtrunA17_Chr3g0086641 35.522 335 209 6 21 352 10 340 4.17e-62 203
Msa0147550 MtrunA17_Chr7g0275011 37.812 320 188 5 50 363 34 348 9.44e-62 202
Msa0147550 MtrunA17_Chr7g0275021 33.803 355 223 6 22 370 10 358 1.27e-61 202
Msa0147550 MtrunA17_Chr1g0189901 37.061 313 192 4 50 359 31 341 5.38e-61 200
Msa0147550 MtrunA17_Chr7g0275001 37.037 324 200 3 50 370 25 347 4.88e-60 197
Msa0147550 MtrunA17_Chr3g0077571 37.299 311 183 7 48 354 28 330 1.27e-58 194
Msa0147550 MtrunA17_Chr4g0008851 35.380 342 203 7 27 359 12 344 1.46e-58 194
Msa0147550 MtrunA17_Chr1g0189891 37.931 319 184 8 50 363 29 338 6.71e-58 192
Msa0147550 MtrunA17_Chr8g0374101 33.623 345 217 7 19 354 8 349 9.53e-58 192
Msa0147550 MtrunA17_Chr1g0189931 37.383 321 188 6 50 363 32 346 4.44e-57 190
Msa0147550 MtrunA17_Chr5g0396511 33.866 313 204 3 52 362 48 359 6.07e-57 190
Msa0147550 MtrunA17_Chr4g0017431 34.551 356 219 7 26 370 8 360 1.89e-56 188
Msa0147550 MtrunA17_Chr6g0463261 70.492 122 36 0 102 223 3 124 2.91e-56 180
Msa0147550 MtrunA17_Chr3g0131321 34.188 351 214 7 24 360 1 348 4.73e-56 188
Msa0147550 MtrunA17_Chr7g0274991 35.093 322 198 5 44 359 27 343 2.28e-55 186
Msa0147550 MtrunA17_Chr6g0457921 35.802 324 195 7 48 363 26 344 5.72e-55 184
Msa0147550 MtrunA17_Chr7g0215961 34.242 330 190 7 50 370 33 344 1.77e-54 183
Msa0147550 MtrunA17_Chr3g0077581 33.232 328 205 8 34 352 20 342 4.70e-54 182
Msa0147550 MtrunA17_Chr2g0294301 32.471 348 220 6 12 354 4 341 8.07e-53 179
Msa0147550 MtrunA17_Chr5g0434621 33.550 307 197 6 51 354 26 328 1.55e-51 175
Msa0147550 MtrunA17_Chr2g0294311 33.908 348 206 10 21 354 9 346 2.42e-51 175
Msa0147550 MtrunA17_Chr3g0092131 31.348 319 212 6 52 366 25 340 2.70e-51 175
Msa0147550 MtrunA17_Chr4g0060811 31.348 319 212 6 52 366 29 344 9.32e-51 174
Msa0147550 MtrunA17_Chr4g0068441 33.929 336 208 7 24 354 15 341 3.34e-50 172
Msa0147550 MtrunA17_Chr8g0380031 32.378 349 212 9 12 356 52 380 2.07e-49 171
Msa0147550 MtrunA17_Chr3g0099151 32.448 339 217 6 29 359 66 400 6.77e-49 170
Msa0147550 MtrunA17_Chr4g0027571 38.208 212 130 1 153 363 3 214 7.72e-49 164
Msa0147550 MtrunA17_Chr3g0099161 33.648 318 200 5 49 359 91 404 1.14e-48 169
Msa0147550 MtrunA17_Chr5g0444401 33.025 324 204 6 48 363 26 344 6.22e-48 166
Msa0147550 MtrunA17_Chr2g0301641 31.692 325 201 7 50 362 43 358 1.95e-46 163
Msa0147550 MtrunA17_Chr8g0349341 31.940 335 200 11 45 367 28 346 2.33e-46 162
Msa0147550 MtrunA17_Chr8g0344941 31.464 321 206 7 50 362 41 355 5.81e-46 161
Msa0147550 MtrunA17_Chr2g0284921 32.051 312 196 7 48 354 32 332 8.98e-46 160
Msa0147550 MtrunA17_Chr3g0085881 32.154 311 191 9 48 354 31 325 4.13e-45 158
Msa0147550 MtrunA17_Chr2g0284991 31.953 338 213 11 22 353 4 330 6.08e-45 159
Msa0147550 MtrunA17_Chr8g0349321 31.212 330 207 10 50 371 37 354 7.68e-45 158
Msa0147550 MtrunA17_Chr2g0285001 34.405 311 189 10 48 353 31 331 9.79e-44 155
Msa0147550 MtrunA17_Chr2g0284951 33.974 312 184 12 48 353 31 326 1.04e-43 155
Msa0147550 MtrunA17_Chr3g0099231 32.087 321 202 7 48 359 26 339 1.29e-42 152
Msa0147550 MtrunA17_Chr8g0349301 32.323 297 180 8 50 340 37 318 3.93e-42 149
Msa0147550 MtrunA17_Chr8g0344931 31.361 338 216 10 22 354 8 334 1.35e-40 146
Msa0147550 MtrunA17_Chr5g0420811 32.803 314 183 12 48 352 31 325 3.98e-39 142
Msa0147550 MtrunA17_Chr7g0229591 40.341 176 105 0 48 223 28 203 6.26e-38 135
Msa0147550 MtrunA17_Chr2g0284941 31.045 335 191 12 28 355 10 311 1.15e-36 136
Msa0147550 MtrunA17_Chr7g0229581 43.382 136 76 1 225 359 8 143 3.67e-35 126
Msa0147550 MtrunA17_Chr8g0370951 31.445 353 192 14 28 352 9 339 4.22e-35 132
Msa0147550 MtrunA17_Chr8g0349331 27.353 340 194 8 29 356 10 308 1.84e-34 129
Msa0147550 MtrunA17_Chr8g0370981 31.010 287 176 9 49 323 43 319 8.59e-32 124
Msa0147550 MtrunA17_Chr2g0283481 29.341 334 209 10 50 363 47 373 4.50e-31 122
Msa0147550 MtrunA17_Chr2g0283511 29.518 332 205 11 55 364 36 360 1.90e-30 120
Msa0147550 MtrunA17_Chr3g0085231 28.107 338 212 11 23 354 12 324 2.77e-30 119
Msa0147550 MtrunA17_Chr1g0160031 27.198 364 226 13 26 363 16 366 4.45e-30 119
Msa0147550 MtrunA17_Chr7g0273101 28.947 342 206 12 49 363 28 359 8.81e-30 117
Msa0147550 MtrunA17_Chr2g0301581 29.464 336 192 13 50 364 34 345 1.30e-29 117
Msa0147550 MtrunA17_Chr8g0381581 27.838 370 227 13 26 366 17 375 1.39e-29 117
Msa0147550 MtrunA17_Chr3g0104821 28.280 343 204 14 50 364 44 372 3.77e-29 116
Msa0147550 MtrunA17_Chr1g0160011 26.331 357 225 13 26 356 16 360 6.94e-29 115
Msa0147550 MtrunA17_Chr3g0112821 30.060 336 199 12 50 364 30 350 1.98e-28 114
Msa0147550 MtrunA17_Chr1g0159991 26.446 363 218 13 26 356 13 358 2.28e-28 114
Msa0147550 MtrunA17_Chr6g0469511 48.214 112 58 0 48 159 28 139 4.89e-28 107
Msa0147550 MtrunA17_Chr2g0301541 28.869 336 194 13 50 364 34 345 7.03e-28 112
Msa0147550 MtrunA17_Chr7g0254461 29.352 293 174 13 49 321 42 321 2.72e-27 111
Msa0147550 MtrunA17_Chr6g0450701 28.647 377 215 16 24 363 4 363 4.81e-27 110
Msa0147550 MtrunA17_Chr6g0450731 26.364 330 215 9 49 364 32 347 9.22e-27 109
Msa0147550 MtrunA17_Chr6g0450711 28.075 374 222 13 19 364 93 447 1.01e-26 110
Msa0147550 MtrunA17_Chr3g0093031 29.598 348 190 16 50 364 30 355 2.14e-26 108
Msa0147550 MtrunA17_Chr0c01g0489581 29.282 362 209 18 27 364 5 343 2.77e-26 107
Msa0147550 MtrunA17_Chr1g0160101 26.862 376 212 16 21 356 13 365 3.40e-26 108
Msa0147550 MtrunA17_Chr7g0226941 27.874 348 212 12 44 363 27 363 3.64e-26 107
Msa0147550 MtrunA17_Chr0c01g0489571 29.282 362 209 18 27 364 5 343 3.67e-26 107
Msa0147550 MtrunA17_Chr4g0057991 28.075 374 237 13 17 369 4 366 5.08e-26 107
Msa0147550 MtrunA17_Chr2g0317261 28.926 363 211 18 26 364 4 343 5.14e-26 107
Msa0147550 MtrunA17_Chr2g0317271 29.201 363 210 18 26 364 4 343 5.91e-26 107
Msa0147550 MtrunA17_Chr4g0018571 39.130 138 83 1 223 359 29 166 8.88e-26 102
Msa0147550 MtrunA17_Chr6g0469521 39.669 121 72 1 225 344 32 152 1.08e-25 101
Msa0147550 MtrunA17_Chr1g0191461 27.733 375 226 15 20 365 4 362 4.12e-25 104
Msa0147550 MtrunA17_Chr4g0027561 49.474 95 48 0 48 142 28 122 4.96e-25 99.4
Msa0147550 MtrunA17_Chr7g0271551 28.955 335 196 15 51 364 37 350 1.38e-24 103
Msa0147550 MtrunA17_Chr1g0159971 25.876 371 225 14 26 362 21 375 1.45e-24 103
Msa0147550 MtrunA17_Chr1g0159981 27.859 341 196 16 49 356 45 368 3.19e-24 102
Msa0147550 MtrunA17_Chr2g0283501 27.596 337 214 12 50 364 31 359 1.24e-23 100
Msa0147550 MtrunA17_Chr8g0352901 25.485 361 234 10 29 363 6 357 2.21e-23 100
Msa0147550 MtrunA17_Chr7g0266061 27.301 326 201 14 48 358 40 344 4.84e-23 99.0
Msa0147550 MtrunA17_Chr6g0450721 26.946 334 206 12 49 364 32 345 9.07e-23 98.2
Msa0147550 MtrunA17_Chr1g0178931 25.152 330 218 12 51 371 38 347 1.10e-22 97.8
Msa0147550 MtrunA17_Chr7g0275291 26.100 341 212 12 50 363 33 360 1.36e-22 97.8
Msa0147550 MtrunA17_Chr7g0226911 24.872 390 219 16 20 363 8 369 1.08e-21 95.5
Msa0147550 MtrunA17_Chr6g0455661 30.047 213 141 5 148 355 238 447 4.54e-21 94.4
Msa0147550 MtrunA17_Chr6g0455661 48.958 96 45 3 49 144 30 121 7.85e-17 81.6
Msa0147550 MtrunA17_Chr1g0198351 28.829 333 200 13 51 371 44 351 6.50e-21 92.8
Msa0147550 MtrunA17_Chr6g0459921 30.698 215 137 6 148 355 127 336 7.85e-21 92.4
Msa0147550 MtrunA17_Chr2g0301571 27.368 285 169 11 99 364 36 301 6.90e-20 89.4
Msa0147550 MtrunA17_Chr2g0283531 25.150 334 225 10 50 364 31 358 8.95e-20 89.7
Msa0147550 MtrunA17_Chr7g0226931 24.100 361 212 14 50 363 38 383 1.04e-19 89.7
Msa0147550 MtrunA17_Chr2g0321991 46.154 91 47 2 47 136 30 119 1.17e-19 84.0
Msa0147550 MtrunA17_Chr1g0189921 50.575 87 42 1 50 136 31 116 1.30e-19 84.7
Msa0147550 MtrunA17_Chr2g0301551 27.018 285 170 10 99 364 36 301 1.35e-19 88.6
Msa0147550 MtrunA17_Chr1g0198381 27.052 329 199 15 51 362 3 307 4.54e-19 87.0
Msa0147550 MtrunA17_Chr8g0370961 25.000 204 146 4 153 354 20 218 4.72e-19 85.5
Msa0147550 MtrunA17_Chr2g0301591 29.010 293 159 11 22 296 10 271 5.97e-19 85.9
Msa0147550 MtrunA17_Chr8g0339251 27.000 300 198 11 29 320 6 292 8.72e-19 86.3
Msa0147550 MtrunA17_Chr3g0096551 26.346 353 207 12 50 364 29 366 1.51e-18 86.3
Msa0147550 MtrunA17_Chr1g0178941 24.779 339 216 14 51 371 41 358 1.54e-18 85.9
Msa0147550 MtrunA17_Chr8g0347751 25.000 344 216 11 50 363 36 367 1.77e-18 86.3
Msa0147550 MtrunA17_Chr3g0112691 27.378 347 197 16 50 364 30 353 5.94e-18 84.3
Msa0147550 MtrunA17_Chr5g0440501 27.397 219 140 5 149 354 10 222 1.39e-16 78.6
Msa0147550 MtrunA17_Chr4g0027581 31.250 144 74 3 240 359 41 183 5.73e-16 75.9
Msa0147550 MtrunA17_Chr8g0370971 36.190 105 63 1 49 149 37 141 3.52e-14 69.7
Msa0147550 MtrunA17_Chr3g0104801 35.461 141 76 6 50 182 44 177 7.87e-14 69.3
Msa0147550 MtrunA17_Chr5g0432081 51.786 56 26 1 309 364 10 64 1.30e-13 65.9
Msa0147550 MtrunA17_Chr4g0018561 52.830 53 25 0 48 100 28 80 3.29e-13 65.1
Msa0147550 MtrunA17_Chr2g0308201 55.556 54 23 1 48 101 33 85 3.92e-13 64.7
Msa0147550 MtrunA17_Chr3g0104831 24.460 278 169 13 115 364 27 291 8.49e-13 68.6
Msa0147550 MtrunA17_Chr2g0301561 28.070 228 138 8 99 309 36 254 1.96e-12 66.6
Msa0147550 MtrunA17_Chr7g0228261 41.538 65 38 0 299 363 10 74 5.08e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0147550 AT1G75880.2 51.220 369 179 1 4 371 6 374 1.00e-136 395
Msa0147550 AT1G75880.1 51.351 370 178 2 4 371 6 375 3.97e-136 393
Msa0147550 AT1G75890.2 52.770 343 158 3 29 367 24 366 8.79e-134 387
Msa0147550 AT1G75890.3 52.770 343 158 3 29 367 53 395 1.46e-133 387
Msa0147550 AT1G75900.1 50.284 352 170 3 21 371 17 364 8.54e-131 379
Msa0147550 AT1G75890.1 50.843 356 158 4 29 367 24 379 2.39e-130 379
Msa0147550 AT5G42170.1 52.239 335 156 2 38 371 38 369 2.09e-127 371
Msa0147550 AT1G59406.1 49.432 352 171 5 21 370 2 348 2.66e-120 352
Msa0147550 AT1G59030.1 49.432 352 171 5 21 370 2 348 2.66e-120 352
Msa0147550 AT1G58725.1 49.432 352 171 5 21 370 2 348 2.66e-120 352
Msa0147550 AT3G14820.1 50.617 324 155 3 48 370 30 349 7.20e-118 346
Msa0147550 AT3G43570.1 47.714 350 146 7 23 370 5 319 3.47e-109 322
Msa0147550 AT1G58520.3 49.263 339 156 7 35 370 16 341 7.76e-109 322
Msa0147550 AT1G58525.1 49.263 339 156 7 35 370 16 341 7.76e-109 322
Msa0147550 AT1G20132.1 48.012 327 169 1 45 370 56 382 5.40e-108 322
Msa0147550 AT1G20120.1 45.921 331 178 1 38 367 66 396 9.16e-107 319
Msa0147550 AT3G43550.1 50.709 282 132 4 30 309 10 286 7.36e-92 277
Msa0147550 AT2G04570.1 41.846 325 188 1 48 371 26 350 2.20e-91 278
Msa0147550 AT1G20130.2 42.433 337 180 3 45 370 179 512 1.76e-90 281
Msa0147550 AT1G20130.1 42.433 337 180 3 45 370 199 532 2.50e-90 281
Msa0147550 AT5G03810.1 43.082 318 179 2 48 363 28 345 9.93e-90 274
Msa0147550 AT2G31540.1 40.833 360 205 5 15 368 2 359 2.10e-89 273
Msa0147550 AT1G06990.1 38.440 359 211 3 22 370 1 359 2.61e-88 271
Msa0147550 AT1G73610.1 42.045 352 186 8 21 370 8 343 2.79e-88 270
Msa0147550 AT2G30310.1 42.598 331 181 5 30 355 16 342 9.48e-88 269
Msa0147550 AT2G30220.1 41.916 334 184 5 30 358 16 344 1.36e-87 269
Msa0147550 AT5G22810.1 42.308 338 188 4 30 363 17 351 5.84e-87 267
Msa0147550 AT1G58430.1 40.816 343 198 4 16 355 3 343 1.12e-85 264
Msa0147550 AT2G40250.1 40.729 329 186 3 44 365 30 356 4.59e-85 262
Msa0147550 AT5G03820.2 39.785 372 208 4 6 363 8 377 6.83e-85 263
Msa0147550 AT5G03820.1 40.290 345 201 3 22 363 7 349 5.05e-84 259
Msa0147550 AT2G42990.1 40.308 325 192 2 48 371 26 349 1.00e-83 258
Msa0147550 AT2G24560.1 38.304 342 207 4 18 355 1 342 2.31e-83 258
Msa0147550 AT5G63170.1 39.169 337 186 5 21 355 3 322 2.13e-82 255
Msa0147550 AT3G16370.1 39.144 327 197 2 39 363 19 345 2.89e-81 252
Msa0147550 AT4G26790.1 38.602 329 199 3 40 366 18 345 5.49e-81 251
Msa0147550 AT4G26790.2 38.602 329 199 3 40 366 18 345 5.49e-81 251
Msa0147550 AT5G45960.1 38.924 316 188 2 48 358 45 360 3.92e-80 250
Msa0147550 AT3G53100.1 38.439 346 202 3 21 365 10 345 8.72e-80 248
Msa0147550 AT1G23500.1 41.945 329 174 6 45 370 30 344 2.24e-79 247
Msa0147550 AT1G75920.2 40.462 346 191 3 21 364 4 336 9.76e-79 246
Msa0147550 AT1G75910.1 40.286 350 192 5 18 364 1 336 9.37e-77 240
Msa0147550 AT1G20135.1 39.744 312 173 5 50 359 29 327 6.41e-76 238
Msa0147550 AT1G75920.1 38.719 359 190 4 23 364 1 346 2.61e-74 234
Msa0147550 AT5G45950.1 35.185 324 205 4 48 371 38 356 3.75e-70 224
Msa0147550 AT1G75920.4 40.264 303 170 2 64 364 15 308 2.08e-68 218
Msa0147550 AT1G29670.1 36.499 337 203 7 23 354 5 335 5.51e-63 206
Msa0147550 AT5G33370.1 37.059 340 203 5 30 363 10 344 6.37e-63 206
Msa0147550 AT4G28780.1 34.286 350 217 5 16 363 7 345 1.81e-62 204
Msa0147550 AT1G29670.2 36.499 337 203 7 23 354 73 403 2.36e-62 206
Msa0147550 AT5G08460.1 35.277 343 215 4 17 353 16 357 1.04e-61 203
Msa0147550 AT2G24560.2 36.577 298 185 4 18 311 1 298 3.16e-61 199
Msa0147550 AT1G75920.3 35.549 346 177 4 21 364 4 305 1.78e-60 197
Msa0147550 AT3G50400.1 37.224 317 188 7 48 354 32 347 4.38e-60 198
Msa0147550 AT1G33811.1 33.237 346 213 9 21 354 5 344 2.17e-58 194
Msa0147550 AT5G18430.1 34.770 348 215 4 26 367 10 351 1.10e-57 192
Msa0147550 AT3G04290.1 34.072 361 217 7 19 370 5 353 2.71e-57 191
Msa0147550 AT2G23540.1 34.810 316 196 6 48 354 46 360 4.19e-57 191
Msa0147550 AT4G18970.1 35.161 310 194 5 49 354 27 333 1.29e-56 189
Msa0147550 AT4G18970.2 35.161 310 194 5 49 354 27 333 2.01e-56 190
Msa0147550 AT1G75930.1 35.455 330 198 6 45 370 24 342 6.04e-56 187
Msa0147550 AT5G45670.1 33.038 339 217 6 20 354 2 334 6.13e-56 187
Msa0147550 AT1G29660.1 33.542 319 204 5 40 354 22 336 6.34e-55 184
Msa0147550 AT1G71691.2 36.452 310 188 7 48 354 53 356 1.12e-54 184
Msa0147550 AT4G10950.2 31.190 311 209 4 47 354 68 376 2.00e-53 182
Msa0147550 AT5G15720.1 36.364 319 191 9 49 360 29 342 2.86e-53 180
Msa0147550 AT1G71250.1 32.749 342 220 5 21 354 7 346 1.72e-52 179
Msa0147550 AT5G37690.1 30.499 341 227 7 22 359 2 335 6.46e-52 176
Msa0147550 AT2G19060.1 34.688 320 184 11 48 359 28 330 4.10e-51 174
Msa0147550 AT2G19050.1 33.546 313 185 10 48 354 29 324 4.42e-51 174
Msa0147550 AT2G31550.1 40.099 202 119 2 156 355 1 202 7.34e-51 169
Msa0147550 AT4G10950.1 31.190 311 205 5 47 354 68 372 8.81e-51 175
Msa0147550 AT5G41890.1 33.333 369 204 11 4 354 4 348 1.35e-50 174
Msa0147550 AT2G19010.2 34.505 313 180 11 49 354 59 353 2.70e-49 170
Msa0147550 AT2G19010.1 34.505 313 180 11 49 354 29 323 3.44e-49 169
Msa0147550 AT1G53920.1 30.029 343 227 7 27 362 25 361 5.90e-49 169
Msa0147550 AT1G74460.1 32.075 318 208 7 52 365 25 338 9.19e-49 169
Msa0147550 AT5G33370.2 34.756 328 195 7 30 350 10 325 2.00e-48 167
Msa0147550 AT5G37690.2 29.912 341 221 8 22 359 2 327 2.96e-47 164
Msa0147550 AT5G55050.1 33.232 328 201 9 48 363 37 358 3.40e-45 159
Msa0147550 AT5G40990.1 32.722 327 197 9 50 362 37 354 1.04e-44 158
Msa0147550 AT2G03980.2 32.110 327 175 10 49 352 42 344 3.31e-42 151
Msa0147550 AT2G03980.3 32.110 327 175 10 49 352 42 344 3.31e-42 151
Msa0147550 AT2G03980.1 32.110 327 175 10 49 352 42 344 3.31e-42 151
Msa0147550 AT2G03980.4 32.110 327 175 10 49 352 42 344 3.31e-42 151
Msa0147550 AT4G16230.1 39.462 223 129 3 48 266 28 248 6.70e-42 147
Msa0147550 AT1G53940.2 31.269 323 207 8 50 362 39 356 4.87e-41 148
Msa0147550 AT2G19050.2 34.127 252 153 7 48 296 29 270 7.95e-41 145
Msa0147550 AT4G30140.1 31.715 309 192 9 49 354 32 324 8.70e-41 147
Msa0147550 AT1G71120.1 32.381 315 197 8 48 356 29 333 1.13e-40 147
Msa0147550 AT5G15720.2 35.448 268 162 8 49 309 29 292 2.40e-38 140
Msa0147550 AT3G14225.1 28.875 329 211 8 50 362 37 358 6.26e-38 140
Msa0147550 AT1G71691.3 34.717 265 164 7 48 309 53 311 1.58e-37 137
Msa0147550 AT3G14225.2 29.141 326 210 8 50 362 37 354 1.82e-37 139
Msa0147550 AT1G53990.1 30.368 326 199 9 50 362 35 345 4.64e-37 137
Msa0147550 AT2G04020.1 37.104 221 114 8 49 257 42 249 2.58e-34 127
Msa0147550 AT1G71691.1 32.171 258 167 6 100 354 3 255 9.05e-34 127
Msa0147550 AT2G04020.2 37.681 207 106 7 49 245 42 235 1.90e-33 127
Msa0147550 AT5G15720.3 32.296 257 165 7 111 360 57 311 9.47e-33 125
Msa0147550 AT5G14450.1 29.211 380 215 14 21 363 9 371 2.00e-32 125
Msa0147550 AT1G54790.3 26.149 348 208 13 49 363 31 362 1.27e-29 117
Msa0147550 AT1G53940.1 31.439 264 172 7 50 309 39 297 2.02e-29 115
Msa0147550 AT3G05180.1 27.353 340 214 8 49 363 35 366 5.86e-29 116
Msa0147550 AT3G48460.1 27.371 369 231 16 15 359 2 357 6.15e-28 113
Msa0147550 AT5G03610.1 27.586 377 222 12 21 371 6 357 5.82e-27 110
Msa0147550 AT2G27360.1 28.319 339 208 10 50 363 33 361 1.11e-26 110
Msa0147550 AT1G56670.1 25.893 336 222 11 49 369 39 362 9.60e-26 107
Msa0147550 AT1G54790.1 25.072 347 213 12 49 363 30 361 1.37e-25 106
Msa0147550 AT3G26430.1 28.116 345 199 16 44 354 25 354 4.95e-25 105
Msa0147550 AT1G09390.1 28.529 333 207 13 49 364 36 354 2.09e-24 103
Msa0147550 AT1G28580.1 27.540 374 232 14 16 364 6 365 2.27e-24 103
Msa0147550 AT1G54000.1 27.731 357 217 15 22 363 8 338 2.51e-24 103
Msa0147550 AT1G28570.1 27.568 370 230 15 22 364 4 362 2.55e-23 100
Msa0147550 AT5G45910.1 26.849 365 232 18 28 364 6 363 3.43e-23 99.8
Msa0147550 AT3G27950.1 26.331 357 227 11 20 354 4 346 3.88e-23 99.8
Msa0147550 AT1G54010.1 27.035 344 219 12 22 354 8 330 3.90e-23 99.8
Msa0147550 AT1G54020.2 28.571 315 196 12 48 354 29 322 4.47e-23 99.8
Msa0147550 AT1G28610.2 26.822 343 212 13 48 364 29 358 1.26e-22 98.6
Msa0147550 AT1G67830.1 25.281 356 222 13 47 369 27 371 1.45e-22 98.2
Msa0147550 AT1G54030.1 24.051 316 204 11 47 354 49 336 1.48e-22 98.6
Msa0147550 AT1G28600.1 26.829 369 229 13 23 364 4 358 1.68e-22 98.2
Msa0147550 AT1G28650.1 27.941 340 207 15 50 363 37 364 5.84e-22 96.7
Msa0147550 AT1G28640.1 27.139 339 211 16 50 363 35 362 1.09e-21 95.9
Msa0147550 AT3G09930.2 26.857 350 205 14 41 370 34 352 1.72e-21 94.7
Msa0147550 AT3G09930.1 26.857 350 205 14 41 370 34 352 1.72e-21 94.7
Msa0147550 AT1G31550.2 26.979 341 210 15 50 364 36 363 4.36e-21 94.0
Msa0147550 AT4G01130.1 24.855 346 214 11 50 363 34 365 4.64e-21 94.0
Msa0147550 AT1G28660.1 26.844 339 212 13 50 363 35 362 8.34e-21 93.2
Msa0147550 AT1G28670.1 27.596 337 213 14 50 363 35 363 1.57e-20 92.4
Msa0147550 AT1G54790.2 23.324 373 213 13 49 363 30 387 1.94e-20 92.4
Msa0147550 AT1G28590.1 26.765 340 213 13 50 364 36 364 2.28e-20 92.0
Msa0147550 AT1G28660.2 27.139 339 210 14 50 363 35 361 3.26e-20 91.7
Msa0147550 AT3G62280.1 28.190 337 199 15 49 363 35 350 2.26e-19 89.0
Msa0147550 AT1G31550.1 26.176 340 211 15 50 364 36 360 6.51e-19 87.8
Msa0147550 AT1G56670.2 26.937 271 176 9 49 309 39 297 8.44e-19 86.3
Msa0147550 AT2G36325.1 26.300 327 204 14 51 363 48 351 2.66e-18 85.5
Msa0147550 AT3G14210.1 28.144 334 193 17 44 359 33 337 4.04e-17 82.4
Msa0147550 AT4G16220.1 46.067 89 46 1 48 136 28 114 1.39e-16 79.0
Msa0147550 AT5G03600.1 25.857 321 203 15 48 358 12 307 7.99e-15 75.1
Msa0147550 AT4G01130.3 22.776 281 182 7 114 363 3 279 1.01e-14 74.3
Msa0147550 AT5G03600.2 25.857 321 203 15 48 358 47 342 1.14e-14 75.1
Msa0147550 AT3G62280.2 28.417 278 161 13 49 309 35 291 3.86e-14 72.8
Msa0147550 AT1G54030.2 22.878 271 175 9 47 309 49 293 1.18e-13 71.6
Msa0147550 AT4G16233.1 35.185 108 65 2 258 360 6 113 4.41e-13 66.2
Msa0147550 AT5G03980.1 22.283 368 221 12 18 370 1 318 9.98e-11 62.8

Find 85 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATATCTACCAGCATATT+TGG 0.160114 1_4:+7515594 Msa0147550:CDS
ACTTGGAAAATTCCGCTTAA+AGG 0.201215 1_4:-7516692 None:intergenic
GATTACATTGTGAGGCTTAA+AGG 0.206137 1_4:+7516092 Msa0147550:CDS
CTGTGAACGAATGATTATTT+AGG 0.216898 1_4:+7518073 Msa0147550:exon
CTCCATCATATTGCAGAAAA+AGG 0.239049 1_4:+7514840 Msa0147550:five_prime_UTR
ACGATTTGGATTATGTGTTT+TGG 0.288122 1_4:+7517975 Msa0147550:CDS
TCCTACATACTCTGACCTTT+TGG 0.307233 1_4:+7516238 Msa0147550:CDS
ACCCACTTGTCCCAACGATT+TGG 0.315870 1_4:+7517961 Msa0147550:CDS
GTATTACCAGTTGAAGAATT+AGG 0.335912 1_4:+7515565 Msa0147550:intron
CCTTTAAAATCTTTCCCATA+TGG 0.337601 1_4:-7515158 None:intergenic
TTTAACAACAAGTTGTCAAT+TGG 0.339699 1_4:+7516661 Msa0147550:CDS
AATTCACTAGGCTGGAGATT+TGG 0.355867 1_4:-7515619 None:intergenic
ATTACATTGTGAGGCTTAAA+GGG 0.370149 1_4:+7516093 Msa0147550:CDS
ATTCCAGCAGTGTTTGTGTT+TGG 0.371256 1_4:+7515071 Msa0147550:CDS
GCATGTATTTCTGTAGAATA+GGG 0.379580 1_4:-7518042 None:intergenic
TCCTTTAACAGCAAAATTAG+AGG 0.379617 1_4:+7515684 Msa0147550:CDS
CGGTGCAATTACCCTCCATA+TGG 0.404107 1_4:+7515143 Msa0147550:CDS
AACTTTGCATCCGGTGGTGC+AGG 0.406962 1_4:+7515655 Msa0147550:CDS
GGAGATTCAATCATGGATAC+TGG 0.411214 1_4:+7515092 Msa0147550:CDS
AAATCTCCAGCCTAGTGAAT+TGG 0.416543 1_4:+7515621 Msa0147550:CDS
TGCATGTATTTCTGTAGAAT+AGG 0.418856 1_4:-7518043 None:intergenic
ACTGCTGGAATATAAACATT+TGG 0.427883 1_4:-7515059 None:intergenic
GTATTTAATGCACCACCAAT+GGG 0.439759 1_4:+7516559 Msa0147550:CDS
TTAACAACAAGTTGTCAATT+GGG 0.443641 1_4:+7516662 Msa0147550:CDS
AAGTAGCAGGATTGTTTACA+TGG 0.453720 1_4:+7516711 Msa0147550:CDS
AACACATAATCCAAATCGTT+GGG 0.476159 1_4:-7517971 None:intergenic
CCGTTGCTAAATCTTCCTGT+TGG 0.476196 1_4:-7515188 None:intergenic
ATGTAAACAATCCTGCTACT+TGG 0.479168 1_4:-7516709 None:intergenic
TTTAAAGGAGGAATTCCAAC+AGG 0.484136 1_4:+7515173 Msa0147550:CDS
CAACTTGTAGGGTATGAAGT+TGG 0.489461 1_4:+7517878 Msa0147550:intron
TCTCCAAACACAAACACTGC+TGG 0.493133 1_4:-7515074 None:intergenic
AGTATTTAATGCACCACCAA+TGG 0.496818 1_4:+7516558 Msa0147550:CDS
GTGAGGCTTAAAGGGCTAGT+TGG 0.498760 1_4:+7516101 Msa0147550:CDS
ACTGGCGTTAACTTTGCATC+CGG 0.499151 1_4:+7515646 Msa0147550:CDS
ATCCAAATCGTTGGGACAAG+TGG 0.508847 1_4:-7517963 None:intergenic
CCTGCCATTGTTCTCTGAAA+CGG 0.511346 1_4:-7516589 None:intergenic
AATCTTTGAATAAGTCTAGC+TGG 0.512632 1_4:-7516073 None:intergenic
CAACTAGGTGCAAGGAGGAT+AGG 0.513503 1_4:+7516535 Msa0147550:CDS
TTAAAGCTGAGTTGACCAAA+AGG 0.515386 1_4:-7516253 None:intergenic
CAGGTGGCTATATCTATGTC+TGG 0.516457 1_4:+7516050 Msa0147550:intron
TTAAAATCTTTCCCATATGG+AGG 0.518010 1_4:-7515155 None:intergenic
GACAGAGGATGTTGTGGCAC+AGG 0.521868 1_4:+7517902 Msa0147550:CDS
AAGTTTAGTACAGATTGAAG+TGG 0.535396 1_4:-7514973 None:intergenic
CAGTGGCCAATTCACTAGGC+TGG 0.536111 1_4:-7515627 None:intergenic
CTCAGCTTTAAATTTCTACC+AGG 0.536839 1_4:+7516265 Msa0147550:CDS
TGGGACAAGTGGGTTGCAAA+TGG 0.537399 1_4:-7517952 None:intergenic
GGTGCAATTACCCTCCATAT+GGG 0.539218 1_4:+7515144 Msa0147550:CDS
ACGCCAGTGGCCAATTCACT+AGG 0.540199 1_4:-7515631 None:intergenic
GGGTATGAAGTTGGAGACAG+AGG 0.544217 1_4:+7517887 Msa0147550:intron
TTCTGTAAACGGATTCAGTA+GGG 0.545237 1_4:-7518009 None:intergenic
AGTATAGAAACTGTAAATAA+CGG 0.545545 1_4:-7514891 None:intergenic
CAGCCTAGTGAATTGGCCAC+TGG 0.548803 1_4:+7515628 Msa0147550:CDS
GGCGTTAACTTTGCATCCGG+TGG 0.549918 1_4:+7515649 Msa0147550:CDS
TTACAATAATATCGAGTAGA+GGG 0.553880 1_4:-7516744 None:intergenic
TAAAATCTTTCCCATATGGA+GGG 0.555342 1_4:-7515154 None:intergenic
AGGATCATATCCTGCACCAC+CGG 0.557628 1_4:-7515665 None:intergenic
GCTGGAATATAAACATTTGG+TGG 0.560701 1_4:-7515056 None:intergenic
TTTACAATAATATCGAGTAG+AGG 0.561107 1_4:-7516745 None:intergenic
AACGGTACACACCCCATTGG+TGG 0.566232 1_4:-7516571 None:intergenic
TGTGTTTGGAGATTCAATCA+TGG 0.568043 1_4:+7515085 Msa0147550:CDS
AGATTTGGATCCAAATATGC+TGG 0.570345 1_4:-7515604 None:intergenic
TTTCTGTAAACGGATTCAGT+AGG 0.573755 1_4:-7518010 None:intergenic
AAACACATAATCCAAATCGT+TGG 0.574159 1_4:-7517972 None:intergenic
GGAGGGTAATTGCACCGAGA+TGG 0.583193 1_4:-7515137 None:intergenic
TATTCAAAGATTACATTGTG+AGG 0.587370 1_4:+7516084 Msa0147550:CDS
TCCAAATCGTTGGGACAAGT+GGG 0.589482 1_4:-7517962 None:intergenic
CCGTTTCAGAGAACAATGGC+AGG 0.591439 1_4:+7516589 Msa0147550:CDS
AAATGTATCAACTAGGTGCA+AGG 0.593045 1_4:+7516527 Msa0147550:CDS
AGGAAGATTTAGCAACGGAA+AGG 0.607707 1_4:+7515193 Msa0147550:CDS
TGAAACGGTACACACCCCAT+TGG 0.610153 1_4:-7516574 None:intergenic
ACCAAAAGGTCAGAGTATGT+AGG 0.611727 1_4:-7516239 None:intergenic
CATGTATTTCTGTAGAATAG+GGG 0.613238 1_4:-7518041 None:intergenic
ACAACATGACAACACCATCT+CGG 0.621905 1_4:+7515123 Msa0147550:CDS
TTCAGAGAACAATGGCAGGA+GGG 0.626380 1_4:+7516593 Msa0147550:CDS
TATATACCTACAAAATCCGA+CGG 0.635287 1_4:-7515218 None:intergenic
TTGGGATTGATACCTTTAAG+CGG 0.640538 1_4:+7516680 Msa0147550:CDS
CCAACAGGAAGATTTAGCAA+CGG 0.641174 1_4:+7515188 Msa0147550:CDS
ATAAAGGAAATGTATCAACT+AGG 0.641574 1_4:+7516520 Msa0147550:intron
TTTCAGAGAACAATGGCAGG+AGG 0.642795 1_4:+7516592 Msa0147550:CDS
TAGCAACGGAAAGGTTCCGT+CGG 0.666232 1_4:+7515202 Msa0147550:CDS
GTTGGAGACAGAGGATGTTG+TGG 0.669718 1_4:+7517896 Msa0147550:CDS
GGATGCAAAGTTAACGCCAG+TGG 0.678422 1_4:-7515644 None:intergenic
TATTTAATGCACCACCAATG+GGG 0.704341 1_4:+7516560 Msa0147550:CDS
TGTATCAACTAGGTGCAAGG+AGG 0.714837 1_4:+7516530 Msa0147550:CDS
TGTACCGTTTCAGAGAACAA+TGG 0.733354 1_4:+7516585 Msa0147550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTATTATTTTATATA+CGG + chr1_4:7516298-7516317 Msa0147550:intron 0.0%
!! TTTATTTCATATATTGATAT+GGG - chr1_4:7515260-7515279 None:intergenic 10.0%
!!! TTTTATTTCATATATTGATA+TGG - chr1_4:7515261-7515280 None:intergenic 10.0%
!! ATCAATATATGAAATAAAAA+AGG + chr1_4:7515262-7515281 Msa0147550:intron 10.0%
!! TCAATATATGAAATAAAAAA+GGG + chr1_4:7515263-7515282 Msa0147550:intron 10.0%
!!! TTACTTATATTATTTTGTTA+AGG - chr1_4:7515410-7515429 None:intergenic 10.0%
!!! TTTAGAATAAATTATCAATT+TGG + chr1_4:7515716-7515735 Msa0147550:intron 10.0%
!!! TATTATATTTTTATAATTCG+AGG - chr1_4:7515771-7515790 None:intergenic 10.0%
!!! AAAAGATTTTTTTTTTTCAA+AGG - chr1_4:7517858-7517877 None:intergenic 10.0%
!! ATGATTATTATTAATCAATC+AGG - chr1_4:7515876-7515895 None:intergenic 15.0%
!! AAATTAACAAGTTTCATATT+TGG + chr1_4:7516005-7516024 Msa0147550:intron 15.0%
!! TTCATGTATATTTATATAAC+AGG + chr1_4:7516031-7516050 Msa0147550:intron 15.0%
!!! AATTGAAATTACCATATTTT+TGG - chr1_4:7516774-7516793 None:intergenic 15.0%
!!! AGGATCTAATTAATATTTTT+TGG - chr1_4:7517054-7517073 None:intergenic 15.0%
!! CTATTAAGATGATATATTAT+TGG - chr1_4:7517280-7517299 None:intergenic 15.0%
!!! AAAATGAATACTTCTATTTT+AGG + chr1_4:7517352-7517371 Msa0147550:intron 15.0%
!!! TAAATTAAGAGAATTTTATG+TGG - chr1_4:7517470-7517489 None:intergenic 15.0%
!! AATGAAATCAATATGAAATT+AGG - chr1_4:7517761-7517780 None:intergenic 15.0%
!!! GGTATATAATTTTGTTAACT+AGG - chr1_4:7514873-7514892 None:intergenic 20.0%
!! AGTATAGAAACTGTAAATAA+CGG - chr1_4:7514894-7514913 None:intergenic 20.0%
!! TAAATATGCAAAATATGAGT+TGG + chr1_4:7515353-7515372 Msa0147550:intron 20.0%
!! TAAGTAAAAGAAGTTGTATT+TGG + chr1_4:7515423-7515442 Msa0147550:intron 20.0%
!! TTAGAGACTAAATTAAGTAA+AGG + chr1_4:7515931-7515950 Msa0147550:intron 20.0%
!! TAGAGACTAAATTAAGTAAA+GGG + chr1_4:7515932-7515951 Msa0147550:intron 20.0%
!! ATGTATATTTATATAACAGG+TGG + chr1_4:7516034-7516053 Msa0147550:intron 20.0%
!! TAAAATTATATAGATGTACC+TGG - chr1_4:7516286-7516305 None:intergenic 20.0%
!! TTCTTGTGTTTACAATATAA+AGG + chr1_4:7516504-7516523 Msa0147550:intron 20.0%
!! ATTGTAAACAACCAAAAATA+TGG + chr1_4:7516760-7516779 Msa0147550:CDS 20.0%
!! CTAACTCAATCTTATAAAAA+CGG + chr1_4:7516820-7516839 Msa0147550:intron 20.0%
!!! AGTGACACTTTAAAAAAATA+TGG + chr1_4:7516857-7516876 Msa0147550:intron 20.0%
!!! GTGACACTTTAAAAAAATAT+GGG + chr1_4:7516858-7516877 Msa0147550:intron 20.0%
!! ATAGAAATACACATATCAAA+AGG - chr1_4:7516986-7517005 None:intergenic 20.0%
!!! TTTTTAAATTATGTGTGTTC+CGG - chr1_4:7517201-7517220 None:intergenic 20.0%
!!! AAAATATCTTAGTGTTTTTG+TGG + chr1_4:7517790-7517809 Msa0147550:intron 20.0%
!!! AAAAAATCTTTTCAACTTGT+AGG + chr1_4:7517866-7517885 Msa0147550:intron 20.0%
!!! AAAAATCTTTTCAACTTGTA+GGG + chr1_4:7517867-7517886 Msa0147550:intron 20.0%
! ACAGGGAAAAATAATAAGAT+GGG - chr1_4:7514938-7514957 None:intergenic 25.0%
! AACAGGGAAAAATAATAAGA+TGG - chr1_4:7514939-7514958 None:intergenic 25.0%
! ATTGAAGTGGAAAAAAGATA+AGG - chr1_4:7514963-7514982 None:intergenic 25.0%
!! ACTTATAGTTACATTTTGCT+TGG + chr1_4:7515299-7515318 Msa0147550:intron 25.0%
! ACTGCAACAAAAATTAGTAT+AGG - chr1_4:7515466-7515485 None:intergenic 25.0%
! ATATTAACATACACACATCT+TGG - chr1_4:7515518-7515537 None:intergenic 25.0%
! TATTCAAAGATTACATTGTG+AGG + chr1_4:7516084-7516103 Msa0147550:CDS 25.0%
!!! CTTTTTTATATATGTGATGC+TGG + chr1_4:7516430-7516449 Msa0147550:intron 25.0%
! ATAAAGGAAATGTATCAACT+AGG + chr1_4:7516520-7516539 Msa0147550:intron 25.0%
! TTTAACAACAAGTTGTCAAT+TGG + chr1_4:7516661-7516680 Msa0147550:CDS 25.0%
! TTAACAACAAGTTGTCAATT+GGG + chr1_4:7516662-7516681 Msa0147550:CDS 25.0%
! TTACAATAATATCGAGTAGA+GGG - chr1_4:7516747-7516766 None:intergenic 25.0%
! TTTACAATAATATCGAGTAG+AGG - chr1_4:7516748-7516767 None:intergenic 25.0%
! AATGCAAAATTGCTCTATTT+AGG - chr1_4:7516922-7516941 None:intergenic 25.0%
!! TAAATAGAGCAATTTTGCAT+TGG + chr1_4:7516921-7516940 Msa0147550:intron 25.0%
! TAATTAGATCCTAGAAAACA+TGG + chr1_4:7517062-7517081 Msa0147550:intron 25.0%
! TAAATTATCCTTACTTTGAG+AGG + chr1_4:7517242-7517261 Msa0147550:intron 25.0%
! TTTAATGAGAAACTCTTCTA+TGG - chr1_4:7517686-7517705 None:intergenic 25.0%
GGAAAAAAGATAAGGTAACA+GGG - chr1_4:7514955-7514974 None:intergenic 30.0%
TGGAAAAAAGATAAGGTAAC+AGG - chr1_4:7514956-7514975 None:intergenic 30.0%
AAGTTTAGTACAGATTGAAG+TGG - chr1_4:7514976-7514995 None:intergenic 30.0%
ACTGCTGGAATATAAACATT+TGG - chr1_4:7515062-7515081 None:intergenic 30.0%
TAAAATCTTTCCCATATGGA+GGG - chr1_4:7515157-7515176 None:intergenic 30.0%
TTAAAATCTTTCCCATATGG+AGG - chr1_4:7515158-7515177 None:intergenic 30.0%
!! CCTTTAAAATCTTTCCCATA+TGG - chr1_4:7515161-7515180 None:intergenic 30.0%
! CCATATGGGAAAGATTTTAA+AGG + chr1_4:7515158-7515177 Msa0147550:CDS 30.0%
!! TATGGGAAAGATTTTAAAGG+AGG + chr1_4:7515161-7515180 Msa0147550:CDS 30.0%
TATATACCTACAAAATCCGA+CGG - chr1_4:7515221-7515240 None:intergenic 30.0%
GTATAGGTTCAATCAATGAA+TGG - chr1_4:7515450-7515469 None:intergenic 30.0%
GTATTACCAGTTGAAGAATT+AGG + chr1_4:7515565-7515584 Msa0147550:intron 30.0%
TTAATGCCTAATTCTTCAAC+TGG - chr1_4:7515574-7515593 None:intergenic 30.0%
AGAATATCTACCAGCATATT+TGG + chr1_4:7515594-7515613 Msa0147550:CDS 30.0%
TCCTTTAACAGCAAAATTAG+AGG + chr1_4:7515684-7515703 Msa0147550:CDS 30.0%
!!! ACCTCTAATTTTGCTGTTAA+AGG - chr1_4:7515688-7515707 None:intergenic 30.0%
TTCGAGGACTAAACTAAAAA+GGG - chr1_4:7515755-7515774 None:intergenic 30.0%
ATTCGAGGACTAAACTAAAA+AGG - chr1_4:7515756-7515775 None:intergenic 30.0%
AATCTTTGAATAAGTCTAGC+TGG - chr1_4:7516076-7516095 None:intergenic 30.0%
ATTACATTGTGAGGCTTAAA+GGG + chr1_4:7516093-7516112 Msa0147550:CDS 30.0%
TACCACAAGAAAAAGACTAT+TGG - chr1_4:7516153-7516172 None:intergenic 30.0%
!! ATATAAAAAAGTGCTGCTAC+AGG - chr1_4:7516421-7516440 None:intergenic 30.0%
TATATATGTGATGCTGGTAA+TGG + chr1_4:7516436-7516455 Msa0147550:intron 30.0%
TCTTATAAAAACGGCTTGTA+CGG + chr1_4:7516829-7516848 Msa0147550:intron 30.0%
TATCTAAACATGTGTCTTGA+GGG + chr1_4:7517012-7517031 Msa0147550:intron 30.0%
AATCTAAACCTCTCAAAGTA+AGG - chr1_4:7517253-7517272 None:intergenic 30.0%
!! ATTAGAAAGAAGTGTTAGAG+AGG + chr1_4:7517490-7517509 Msa0147550:intron 30.0%
AACACATAATCCAAATCGTT+GGG - chr1_4:7517974-7517993 None:intergenic 30.0%
AAACACATAATCCAAATCGT+TGG - chr1_4:7517975-7517994 None:intergenic 30.0%
!! ACGATTTGGATTATGTGTTT+TGG + chr1_4:7517975-7517994 Msa0147550:CDS 30.0%
!! CGATTTGGATTATGTGTTTT+GGG + chr1_4:7517976-7517995 Msa0147550:CDS 30.0%
! CATGTATTTCTGTAGAATAG+GGG - chr1_4:7518044-7518063 None:intergenic 30.0%
! GCATGTATTTCTGTAGAATA+GGG - chr1_4:7518045-7518064 None:intergenic 30.0%
! TGCATGTATTTCTGTAGAAT+AGG - chr1_4:7518046-7518065 None:intergenic 30.0%
CTGTGAACGAATGATTATTT+AGG + chr1_4:7518073-7518092 Msa0147550:exon 30.0%
! CTTTTTCTGCAATATGATGG+AGG - chr1_4:7514842-7514861 None:intergenic 35.0%
CTCCATCATATTGCAGAAAA+AGG + chr1_4:7514840-7514859 Msa0147550:five_prime_UTR 35.0%
! CTCCTTTTTCTGCAATATGA+TGG - chr1_4:7514845-7514864 None:intergenic 35.0%
GCTGGAATATAAACATTTGG+TGG - chr1_4:7515059-7515078 None:intergenic 35.0%
TGTGTTTGGAGATTCAATCA+TGG + chr1_4:7515085-7515104 Msa0147550:CDS 35.0%
TTTAAAGGAGGAATTCCAAC+AGG + chr1_4:7515173-7515192 Msa0147550:CDS 35.0%
AGATTTGGATCCAAATATGC+TGG - chr1_4:7515607-7515626 None:intergenic 35.0%
TCGAGGACTAAACTAAAAAG+GGG - chr1_4:7515754-7515773 None:intergenic 35.0%
GATTACATTGTGAGGCTTAA+AGG + chr1_4:7516092-7516111 Msa0147550:CDS 35.0%
! AGCCAATAGTCTTTTTCTTG+TGG + chr1_4:7516148-7516167 Msa0147550:CDS 35.0%
! AGTCTTTTTCTTGTGGTACT+AGG + chr1_4:7516155-7516174 Msa0147550:CDS 35.0%
! TTAAAGCTGAGTTGACCAAA+AGG - chr1_4:7516256-7516275 None:intergenic 35.0%
!! CTCAGCTTTAAATTTCTACC+AGG + chr1_4:7516265-7516284 Msa0147550:CDS 35.0%
AAATGTATCAACTAGGTGCA+AGG + chr1_4:7516527-7516546 Msa0147550:CDS 35.0%
AGTATTTAATGCACCACCAA+TGG + chr1_4:7516558-7516577 Msa0147550:CDS 35.0%
GTATTTAATGCACCACCAAT+GGG + chr1_4:7516559-7516578 Msa0147550:CDS 35.0%
TATTTAATGCACCACCAATG+GGG + chr1_4:7516560-7516579 Msa0147550:CDS 35.0%
TTGGGATTGATACCTTTAAG+CGG + chr1_4:7516680-7516699 Msa0147550:CDS 35.0%
ACTTGGAAAATTCCGCTTAA+AGG - chr1_4:7516695-7516714 None:intergenic 35.0%
ATGTAAACAATCCTGCTACT+TGG - chr1_4:7516712-7516731 None:intergenic 35.0%
AAGTAGCAGGATTGTTTACA+TGG + chr1_4:7516711-7516730 Msa0147550:CDS 35.0%
!! TCATGTTAACTTGTGTCCTT+AGG + chr1_4:7516881-7516900 Msa0147550:intron 35.0%
!! CATGTTAACTTGTGTCCTTA+GGG + chr1_4:7516882-7516901 Msa0147550:intron 35.0%
GTATCTAAACATGTGTCTTG+AGG + chr1_4:7517011-7517030 Msa0147550:intron 35.0%
! GTTATGTGTCCATGTTTTCT+AGG - chr1_4:7517074-7517093 None:intergenic 35.0%
GATAATAGATGTCGATGTGT+CGG - chr1_4:7517109-7517128 None:intergenic 35.0%
TTAGACACACTCACATCAAA+TGG - chr1_4:7517544-7517563 None:intergenic 35.0%
! TTCTGTAAACGGATTCAGTA+GGG - chr1_4:7518012-7518031 None:intergenic 35.0%
! TTTCTGTAAACGGATTCAGT+AGG - chr1_4:7518013-7518032 None:intergenic 35.0%
! GGCAACAAGTTTTCTGTAAA+CGG - chr1_4:7518023-7518042 None:intergenic 35.0%
ATTCCAGCAGTGTTTGTGTT+TGG + chr1_4:7515071-7515090 Msa0147550:CDS 40.0%
GGAGATTCAATCATGGATAC+TGG + chr1_4:7515092-7515111 Msa0147550:CDS 40.0%
ACAACATGACAACACCATCT+CGG + chr1_4:7515123-7515142 Msa0147550:CDS 40.0%
CCAACAGGAAGATTTAGCAA+CGG + chr1_4:7515188-7515207 Msa0147550:CDS 40.0%
AGGAAGATTTAGCAACGGAA+AGG + chr1_4:7515193-7515212 Msa0147550:CDS 40.0%
AATTCACTAGGCTGGAGATT+TGG - chr1_4:7515622-7515641 None:intergenic 40.0%
AAATCTCCAGCCTAGTGAAT+TGG + chr1_4:7515621-7515640 Msa0147550:CDS 40.0%
AAGTAAAGGGCAACAACTCA+TGG + chr1_4:7515945-7515964 Msa0147550:intron 40.0%
! TCCTACATACTCTGACCTTT+TGG + chr1_4:7516238-7516257 Msa0147550:CDS 40.0%
ACCAAAAGGTCAGAGTATGT+AGG - chr1_4:7516242-7516261 None:intergenic 40.0%
TGTACCGTTTCAGAGAACAA+TGG + chr1_4:7516585-7516604 Msa0147550:CDS 40.0%
AATTATGTGTGTTCCGGTGT+CGG - chr1_4:7517195-7517214 None:intergenic 40.0%
CAACTTGTAGGGTATGAAGT+TGG + chr1_4:7517878-7517897 Msa0147550:intron 40.0%
TCTCCAAACACAAACACTGC+TGG - chr1_4:7515077-7515096 None:intergenic 45.0%
GGTGCAATTACCCTCCATAT+GGG + chr1_4:7515144-7515163 Msa0147550:CDS 45.0%
CCGTTGCTAAATCTTCCTGT+TGG - chr1_4:7515191-7515210 None:intergenic 45.0%
! AAGGTTCCGTCGGATTTTGT+AGG + chr1_4:7515212-7515231 Msa0147550:CDS 45.0%
ACTGGCGTTAACTTTGCATC+CGG + chr1_4:7515646-7515665 Msa0147550:CDS 45.0%
CAGGTGGCTATATCTATGTC+TGG + chr1_4:7516050-7516069 Msa0147550:intron 45.0%
TGTATCAACTAGGTGCAAGG+AGG + chr1_4:7516530-7516549 Msa0147550:CDS 45.0%
! CCTGCCATTGTTCTCTGAAA+CGG - chr1_4:7516592-7516611 None:intergenic 45.0%
TTTCAGAGAACAATGGCAGG+AGG + chr1_4:7516592-7516611 Msa0147550:CDS 45.0%
TTCAGAGAACAATGGCAGGA+GGG + chr1_4:7516593-7516612 Msa0147550:CDS 45.0%
! AGCGGAATTTTCCAAGTAGC+AGG + chr1_4:7516698-7516717 Msa0147550:CDS 45.0%
GTTGCTTAACATGTGCCCTA+AGG - chr1_4:7516900-7516919 None:intergenic 45.0%
TCCAAATCGTTGGGACAAGT+GGG - chr1_4:7517965-7517984 None:intergenic 45.0%
ATCCAAATCGTTGGGACAAG+TGG - chr1_4:7517966-7517985 None:intergenic 45.0%
CGGTGCAATTACCCTCCATA+TGG + chr1_4:7515143-7515162 Msa0147550:CDS 50.0%
TAGCAACGGAAAGGTTCCGT+CGG + chr1_4:7515202-7515221 Msa0147550:CDS 50.0%
GGATGCAAAGTTAACGCCAG+TGG - chr1_4:7515647-7515666 None:intergenic 50.0%
AGGATCATATCCTGCACCAC+CGG - chr1_4:7515668-7515687 None:intergenic 50.0%
! GTGAGGCTTAAAGGGCTAGT+TGG + chr1_4:7516101-7516120 Msa0147550:CDS 50.0%
CAACTAGGTGCAAGGAGGAT+AGG + chr1_4:7516535-7516554 Msa0147550:CDS 50.0%
TGAAACGGTACACACCCCAT+TGG - chr1_4:7516577-7516596 None:intergenic 50.0%
CCGTTTCAGAGAACAATGGC+AGG + chr1_4:7516589-7516608 Msa0147550:CDS 50.0%
ACCAAACATGTGTCCGACAC+CGG + chr1_4:7517179-7517198 Msa0147550:intron 50.0%
GGGTATGAAGTTGGAGACAG+AGG + chr1_4:7517887-7517906 Msa0147550:intron 50.0%
GTTGGAGACAGAGGATGTTG+TGG + chr1_4:7517896-7517915 Msa0147550:CDS 50.0%
!! TGGGACAAGTGGGTTGCAAA+TGG - chr1_4:7517955-7517974 None:intergenic 50.0%
ACCCACTTGTCCCAACGATT+TGG + chr1_4:7517961-7517980 Msa0147550:CDS 50.0%
GGAGGGTAATTGCACCGAGA+TGG - chr1_4:7515140-7515159 None:intergenic 55.0%
CAGTGGCCAATTCACTAGGC+TGG - chr1_4:7515630-7515649 None:intergenic 55.0%
CAGCCTAGTGAATTGGCCAC+TGG + chr1_4:7515628-7515647 Msa0147550:CDS 55.0%
ACGCCAGTGGCCAATTCACT+AGG - chr1_4:7515634-7515653 None:intergenic 55.0%
GGCGTTAACTTTGCATCCGG+TGG + chr1_4:7515649-7515668 Msa0147550:CDS 55.0%
AACTTTGCATCCGGTGGTGC+AGG + chr1_4:7515655-7515674 Msa0147550:CDS 55.0%
AACGGTACACACCCCATTGG+TGG - chr1_4:7516574-7516593 None:intergenic 55.0%
! TCCGGTGTCGGACACATGTT+TGG - chr1_4:7517183-7517202 None:intergenic 55.0%
GACAGAGGATGTTGTGGCAC+AGG + chr1_4:7517902-7517921 Msa0147550:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 7514794 7518166 7514794 ID=Msa0147550;Name=Msa0147550
chr1_4 mRNA 7514794 7518166 7514794 ID=Msa0147550-mRNA-1;Parent=Msa0147550;Name=Msa0147550-mRNA-1;_AED=0.09;_eAED=0.09;_QI=136|1|1|1|1|1|5|88|371
chr1_4 exon 7514794 7515233 7514794 ID=Msa0147550-mRNA-1:exon:3268;Parent=Msa0147550-mRNA-1
chr1_4 exon 7515575 7515705 7515575 ID=Msa0147550-mRNA-1:exon:3269;Parent=Msa0147550-mRNA-1
chr1_4 exon 7516053 7516286 7516053 ID=Msa0147550-mRNA-1:exon:3270;Parent=Msa0147550-mRNA-1
chr1_4 exon 7516526 7516781 7516526 ID=Msa0147550-mRNA-1:exon:3271;Parent=Msa0147550-mRNA-1
chr1_4 exon 7517888 7518166 7517888 ID=Msa0147550-mRNA-1:exon:3272;Parent=Msa0147550-mRNA-1
chr1_4 five_prime_UTR 7514794 7514929 7514794 ID=Msa0147550-mRNA-1:five_prime_utr;Parent=Msa0147550-mRNA-1
chr1_4 CDS 7514930 7515233 7514930 ID=Msa0147550-mRNA-1:cds;Parent=Msa0147550-mRNA-1
chr1_4 CDS 7515575 7515705 7515575 ID=Msa0147550-mRNA-1:cds;Parent=Msa0147550-mRNA-1
chr1_4 CDS 7516053 7516286 7516053 ID=Msa0147550-mRNA-1:cds;Parent=Msa0147550-mRNA-1
chr1_4 CDS 7516526 7516781 7516526 ID=Msa0147550-mRNA-1:cds;Parent=Msa0147550-mRNA-1
chr1_4 CDS 7517888 7518078 7517888 ID=Msa0147550-mRNA-1:cds;Parent=Msa0147550-mRNA-1
chr1_4 three_prime_UTR 7518079 7518166 7518079 ID=Msa0147550-mRNA-1:three_prime_utr;Parent=Msa0147550-mRNA-1
Gene Sequence

>Msa0147550

ATGTTCCCATCTTATTATTTTTCCCTGTTACCTTATCTTTTTTCCACTTCAATCTGTACTAAACTTCTTCTACGTTTGACAATATTTTTAGTTGTTTTTTGCAAAACAAATGCTGTTTTGAAACTACCACCAAATGTTTATATTCCAGCAGTGTTTGTGTTTGGAGATTCAATCATGGATACTGGAAATAACAACAACATGACAACACCATCTCGGTGCAATTACCCTCCATATGGGAAAGATTTTAAAGGAGGAATTCCAACAGGAAGATTTAGCAACGGAAAGGTTCCGTCGGATTTTGTAGTTGAAGAATTAGGCATTAAAGAATATCTACCAGCATATTTGGATCCAAATCTCCAGCCTAGTGAATTGGCCACTGGCGTTAACTTTGCATCCGGTGGTGCAGGATATGATCCTTTAACAGCAAAATTAGAGGTGGCTATATCTATGTCTGGCCAGCTAGACTTATTCAAAGATTACATTGTGAGGCTTAAAGGGCTAGTTGGTGAAGATAGAGCAAATTTCATCTTAGCCAATAGTCTTTTTCTTGTGGTACTAGGAAGCAATGACATTTCTAACACGTACTACTTGTCTCATTTAAGACAAGCACAATATGACTTTCCTACATACTCTGACCTTTTGGTCAACTCAGCTTTAAATTTCTACCAGGAAATGTATCAACTAGGTGCAAGGAGGATAGGAGTATTTAATGCACCACCAATGGGGTGTGTACCGTTTCAGAGAACAATGGCAGGAGGGATAATAAGAACATGTGTGCAAGAGTACAATGATGCAGCTGTGTTTTTTAACAACAAGTTGTCAATTGGGATTGATACCTTTAAGCGGAATTTTCCAAGTAGCAGGATTGTTTACATGGATGTTTACAACCCTCTACTCGATATTATTGTAAACAACCAAAAATATGGGTATGAAGTTGGAGACAGAGGATGTTGTGGCACAGGCACACTAGAAGTTACTTATTTATGCAACCATTTGCAACCCACTTGTCCCAACGATTTGGATTATGTGTTTTGGGACAGTTTTCACCCTACTGAATCCGTTTACAGAAAACTTGTTGCCCCTATTCTACAGAAATACATGCAGCAGTTACTGTGA
Protein sequence

>Msa0147550

MFPSYYFSLLPYLFSTSICTKLLLRLTIFLVVFCKTNAVLKLPPNVYIPAVFVFGDSIMDTGNNNNMTTPSRCNYPPYGKDFKGGIPTGRFSNGKVPSDFVVEELGIKEYLPAYLDPNLQPSELATGVNFASGGAGYDPLTAKLEVAISMSGQLDLFKDYIVRLKGLVGEDRANFILANSLFLVVLGSNDISNTYYLSHLRQAQYDFPTYSDLLVNSALNFYQEMYQLGARRIGVFNAPPMGCVPFQRTMAGGIIRTCVQEYNDAAVFFNNKLSIGIDTFKRNFPSSRIVYMDVYNPLLDIIVNNQKYGYEVGDRGCCGTGTLEVTYLCNHLQPTCPNDLDYVFWDSFHPTESVYRKLVAPILQKYMQQLL*