AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1442290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1442290 MtrunA17_Chr1g0191301 99.420 345 2 0 1 345 1 345 0.0 709
Msa1442290 MtrunA17_Chr1g0196311 72.174 345 94 2 1 344 17 360 0.0 530
Msa1442290 MtrunA17_Chr7g0259161 70.655 351 95 6 1 344 1 350 0.0 511
Msa1442290 MtrunA17_Chr6g0477251 40.413 339 195 2 6 341 554 888 2.11e-79 259
Msa1442290 MtrunA17_Chr6g0477251 38.757 338 200 2 7 341 1 334 1.76e-73 244
Msa1442290 MtrunA17_Chr6g0477161 39.053 338 198 3 8 341 351 684 2.75e-76 248
Msa1442290 MtrunA17_Chr6g0477161 39.763 337 196 2 9 342 4 336 3.05e-76 247
Msa1442290 MtrunA17_Chr6g0477231 35.522 335 213 1 10 341 2 336 5.36e-75 234
Msa1442290 MtrunA17_Chr6g0477271 38.065 310 176 3 36 340 53 351 8.07e-67 214
Msa1442290 MtrunA17_Chr6g0477241 30.321 343 182 5 5 341 7 298 1.19e-48 165
Msa1442290 MtrunA17_Chr4g0025291 34.843 287 160 5 67 340 43 315 9.32e-47 161
Msa1442290 MtrunA17_Chr7g0214851 32.143 308 171 7 61 341 54 350 2.24e-41 147
Msa1442290 MtrunA17_Chr1g0210121 31.310 313 175 8 53 343 51 345 7.25e-39 141
Msa1442290 MtrunA17_Chr7g0268091 31.142 289 167 7 67 342 45 314 7.15e-38 137
Msa1442290 MtrunA17_Chr3g0133701 29.373 303 169 7 53 344 32 300 8.33e-37 134
Msa1442290 MtrunA17_Chr8g0351211 29.573 328 191 9 38 345 14 321 3.80e-36 133
Msa1442290 MtrunA17_Chr1g0204211 33.223 301 175 9 32 322 37 321 7.02e-36 132
Msa1442290 MtrunA17_Chr7g0235741 31.046 306 182 8 53 345 65 354 3.13e-35 131
Msa1442290 MtrunA17_Chr1g0149271 33.212 274 158 7 38 305 16 270 3.49e-35 130
Msa1442290 MtrunA17_Chr6g0474541 33.884 242 134 7 32 264 47 271 7.84e-35 130
Msa1442290 MtrunA17_Chr8g0351201 30.368 326 183 10 37 342 25 326 2.39e-34 128
Msa1442290 MtrunA17_Chr8g0351171 31.613 310 178 10 25 321 8 296 8.05e-34 127
Msa1442290 MtrunA17_Chr6g0474411 30.065 306 177 9 32 320 22 307 1.27e-33 126
Msa1442290 MtrunA17_Chr1g0204201 32.270 282 163 7 38 305 24 291 1.35e-33 126
Msa1442290 MtrunA17_Chr3g0081521 32.627 236 148 3 97 322 80 314 5.01e-33 125
Msa1442290 MtrunA17_Chr4g0045181 30.132 302 182 8 53 341 33 318 5.63e-33 124
Msa1442290 MtrunA17_Chr6g0474631 33.032 221 126 5 53 264 38 245 3.85e-32 122
Msa1442290 MtrunA17_Chr6g0474471 30.033 303 186 9 31 319 15 305 3.57e-31 120
Msa1442290 MtrunA17_Chr6g0458881 31.660 259 136 4 105 323 160 417 3.07e-30 119
Msa1442290 MtrunA17_Chr4g0045131 27.575 301 186 10 53 340 73 354 1.04e-29 116
Msa1442290 MtrunA17_Chr6g0474491 30.769 234 143 6 37 263 23 244 1.20e-29 115
Msa1442290 MtrunA17_Chr3g0095711 27.832 309 181 9 54 340 80 368 6.35e-29 114
Msa1442290 MtrunA17_Chr7g0228721 30.712 267 136 5 105 323 165 430 7.11e-29 116
Msa1442290 MtrunA17_Chr4g0045121 29.658 263 156 8 53 305 36 279 8.59e-28 110
Msa1442290 MtrunA17_Chr4g0045191 28.617 311 172 11 38 339 31 300 9.59e-28 110
Msa1442290 MtrunA17_Chr1g0205871 28.956 297 169 9 38 314 21 295 4.38e-26 106
Msa1442290 MtrunA17_Chr5g0394251 27.742 310 189 10 25 315 9 302 1.07e-25 105
Msa1442290 MtrunA17_Chr5g0394241 26.403 303 181 9 23 307 12 290 7.77e-25 102
Msa1442290 MtrunA17_Chr7g0233871 31.343 268 149 8 65 315 48 297 8.45e-25 102
Msa1442290 MtrunA17_Chr8g0353951 26.230 305 190 9 54 341 43 329 1.04e-24 102
Msa1442290 MtrunA17_Chr5g0394211 26.780 295 177 9 38 314 56 329 5.86e-24 100
Msa1442290 MtrunA17_Chr1g0205781 31.359 287 151 11 38 305 25 284 1.87e-23 99.0
Msa1442290 MtrunA17_Chr1g0205791 31.641 256 137 8 65 305 46 278 2.23e-23 99.4
Msa1442290 MtrunA17_Chr6g0474611 37.079 89 49 1 183 264 3 91 4.68e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1442290 AT5G27320.1 76.744 344 79 1 1 344 1 343 0.0 566
Msa1442290 AT3G05120.1 75.072 345 85 1 1 344 1 345 0.0 556
Msa1442290 AT3G63010.1 69.477 344 102 3 1 342 1 343 0.0 510
Msa1442290 AT5G23530.1 36.676 349 191 7 1 341 1 327 2.29e-69 220
Msa1442290 AT5G62180.1 33.449 287 172 7 32 308 15 292 1.64e-41 147
Msa1442290 AT1G68620.1 35.433 254 143 5 62 308 57 296 1.81e-41 148
Msa1442290 AT5G06570.1 33.651 315 170 8 47 342 33 327 1.46e-40 145
Msa1442290 AT5G06570.2 33.651 315 170 8 47 342 33 327 1.46e-40 145
Msa1442290 AT5G06570.3 33.651 315 170 8 47 342 48 342 1.82e-40 145
Msa1442290 AT5G06570.4 33.651 315 170 8 47 342 48 342 1.82e-40 145
Msa1442290 AT5G16080.1 32.000 300 166 8 53 336 53 330 2.45e-37 137
Msa1442290 AT1G47480.1 30.420 286 174 6 33 314 16 280 3.97e-36 133
Msa1442290 AT2G03550.1 31.230 317 180 10 39 341 19 311 2.54e-34 128
Msa1442290 AT1G19190.1 32.039 309 172 11 53 344 30 317 3.07e-34 128
Msa1442290 AT2G45600.1 33.585 265 144 7 65 312 39 288 7.63e-34 127
Msa1442290 AT2G45610.1 31.757 296 172 9 32 312 16 296 1.13e-33 127
Msa1442290 AT3G48700.1 33.231 325 163 13 50 343 27 328 1.61e-33 126
Msa1442290 AT3G48690.1 32.234 273 151 7 50 305 27 282 3.65e-33 125
Msa1442290 AT5G14310.1 31.439 264 135 4 105 323 151 413 1.48e-32 126
Msa1442290 AT3G27320.2 32.576 264 131 6 105 323 134 395 1.79e-30 120
Msa1442290 AT3G27320.1 33.080 263 131 5 105 323 166 427 2.76e-30 120
Msa1442290 AT1G49650.1 30.798 263 158 7 53 305 86 334 2.91e-29 116
Msa1442290 AT1G49640.1 29.020 255 165 5 54 304 32 274 9.07e-27 108
Msa1442290 AT1G49660.1 29.502 261 161 5 53 303 30 277 1.40e-26 107

Find 153 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGATATGGTTCTATTTC+TGG 0.132714 tig0029852:+37976 Msa1442290:three_prime_UTR
GTTATATATATAACTAATTT+TGG 0.139303 tig0029852:+38052 Msa1442290:three_prime_UTR
GGGAGCTATGGCCATGTTTA+TGG 0.200844 tig0029852:+37901 Msa1442290:three_prime_UTR
CACCCACCCCATCAGGAAAT+TGG 0.222970 tig0029852:+37840 Msa1442290:three_prime_UTR
ACAGAGAAATGCTCATTATT+TGG 0.229509 tig0029852:-37589 None:intergenic
AAATGCTTCTTCTTTCTTGA+TGG 0.233142 tig0029852:+35952 Msa1442290:five_prime_UTR
ACGTCTTTGCAAATGTAAAT+AGG 0.243260 tig0029852:+38236 Msa1442290:three_prime_UTR
CCATCAAGGCTTCGACCTTT+TGG 0.246635 tig0029852:-37418 None:intergenic
TTGTCGTCTCGGTGAATTAT+AGG 0.247260 tig0029852:+37038 Msa1442290:CDS
ATGGGTGGAAAGCTGTTAAA+TGG 0.260029 tig0029852:+37098 Msa1442290:CDS
CTTCAGTTGTCCTCCTTGTT+TGG 0.278009 tig0029852:+38207 Msa1442290:three_prime_UTR
AAGAGTCTTGTGGTGGTTGC+TGG 0.278599 tig0029852:+37454 Msa1442290:CDS
TAATGTTACCTTTGAATCAT+TGG 0.295142 tig0029852:-36074 None:intergenic
TGATCTCTGTCTTCCCCTTC+AGG 0.298031 tig0029852:-37373 None:intergenic
TGCTGGTTTGGATCTTGTTC+AGG 0.302371 tig0029852:+37471 Msa1442290:CDS
TCTCCTCCTTCATTCACCTT+TGG 0.302485 tig0029852:+35923 Msa1442290:five_prime_UTR
ATTGTATGCTAACTTGAAAT+TGG 0.306162 tig0029852:-36693 None:intergenic
TATCATATAAGTTCCTAATC+AGG 0.325409 tig0029852:-37754 None:intergenic
AATGTTACCTTTGAATCATT+GGG 0.326815 tig0029852:-36073 None:intergenic
TCTTGTGGTGGTTGCTGGTT+TGG 0.332790 tig0029852:+37459 Msa1442290:CDS
TCCAGCTTTCTCAAGTCCTT+TGG 0.334783 tig0029852:-37512 None:intergenic
TCCACAGGATTCGCATTTGC+TGG 0.346221 tig0029852:-36779 None:intergenic
AGCATCGGACTCTGGGATTC+CGG 0.346427 tig0029852:+37225 Msa1442290:CDS
AGGACTTTGCTCCCCTGATT+AGG 0.354879 tig0029852:+37741 Msa1442290:three_prime_UTR
GCAACCACCACAAGACTCTT+AGG 0.357754 tig0029852:-37451 None:intergenic
ATAGGCGTGCGCCTGAAAAT+AGG 0.363489 tig0029852:+37056 Msa1442290:CDS
CTTGTTCAGGATTGGCAATT+GGG 0.363782 tig0029852:+37484 Msa1442290:CDS
TCTTGTTCAGGATTGGCAAT+TGG 0.368427 tig0029852:+37483 Msa1442290:CDS
TGGCTATGTTGCGGTGTGAT+TGG 0.392294 tig0029852:+35820 Msa1442290:five_prime_UTR
ATACTGCTAAACCCTTTGTT+TGG 0.396562 tig0029852:+37259 Msa1442290:CDS
ATTAATTGTGTCTGTGAGAT+TGG 0.399827 tig0029852:+37776 Msa1442290:three_prime_UTR
GACTCTGGGATTCCGGTGTT+GGG 0.401673 tig0029852:+37232 Msa1442290:CDS
GAAGATATGGTTCTATTTCT+GGG 0.401998 tig0029852:+37977 Msa1442290:three_prime_UTR
TTCTCGAGCAAGCCACGGTT+GGG 0.404625 tig0029852:+37554 Msa1442290:CDS
GGACTCTGGGATTCCGGTGT+TGG 0.405337 tig0029852:+37231 Msa1442290:CDS
GGAAGAACCTCAGCAGTAAC+AGG 0.409700 tig0029852:-36914 None:intergenic
GTTTGGATCTTGTTCAGGAT+TGG 0.415765 tig0029852:+37476 Msa1442290:CDS
AGAAAATGCTAAAGTAAAAC+AGG 0.416926 tig0029852:-35861 None:intergenic
GAATCCGAAAAGCGTCTTGA+TGG 0.417426 tig0029852:+37298 Msa1442290:CDS
TGAAAGATAGAGACTGGTAT+TGG 0.418998 tig0029852:+37338 Msa1442290:CDS
GGAGCTATGGCCATGTTTAT+GGG 0.420489 tig0029852:+37902 Msa1442290:three_prime_UTR
TGTTGTTCTTCTCCCTCAAC+AGG 0.421393 tig0029852:-36866 None:intergenic
CATCACGCGTGTAACCCTTT+TGG 0.421489 tig0029852:+37394 Msa1442290:CDS
CGAATCTACCGTCCTGTTGA+GGG 0.426280 tig0029852:+36854 Msa1442290:CDS
TCTGGAGCACCCACCCCATC+AGG 0.427760 tig0029852:+37833 Msa1442290:three_prime_UTR
CCAAAAGGTCGAAGCCTTGA+TGG 0.429491 tig0029852:+37418 Msa1442290:CDS
TGCTAAACCCTTTGTTTGGC+GGG 0.429653 tig0029852:+37263 Msa1442290:CDS
GTGGGTAATCACAACTTTAG+TGG 0.434751 tig0029852:-37927 None:intergenic
GCATTGAAAGCATCGGACTC+TGG 0.434852 tig0029852:+37217 Msa1442290:CDS
ATTTGGATTGTGGTTGGTTG+TGG 0.435688 tig0029852:+35800 None:intergenic
AGTTGGTTACTTCCAGCCAT+TGG 0.441895 tig0029852:-36046 None:intergenic
CAGTGGGGCTTGCCCTTGTA+TGG 0.443406 tig0029852:+38024 Msa1442290:three_prime_UTR
AACAAAATCAATCCAATGGC+TGG 0.444127 tig0029852:+36034 Msa1442290:exon
TTGTCCTCCTTGTTTGGCAA+TGG 0.447399 tig0029852:+38213 Msa1442290:three_prime_UTR
ATCAAAACCCACATGTTCAA+TGG 0.451446 tig0029852:-36668 None:intergenic
ACCCACCCCATCAGGAAATT+GGG 0.453005 tig0029852:+37841 Msa1442290:three_prime_UTR
CCTGTTGTCATGTTCTTCCA+CGG 0.459630 tig0029852:+36935 Msa1442290:CDS
TATCCTTGCGCTTATGAAGA+TGG 0.468068 tig0029852:+37079 Msa1442290:CDS
ATCATATAAGTTCCTAATCA+GGG 0.469230 tig0029852:-37753 None:intergenic
TTTCTCGAGCAAGCCACGGT+TGG 0.476045 tig0029852:+37553 Msa1442290:CDS
TGGGTGGAAAGCTGTTAAAT+GGG 0.477103 tig0029852:+37099 Msa1442290:CDS
CTAAAGTAAAACAGGAATGA+AGG 0.478351 tig0029852:-35853 None:intergenic
CAAGGGCAAGCCCCACTGAT+TGG 0.481696 tig0029852:-38019 None:intergenic
GAGTGGTGAAGGATAAGAAA+AGG 0.484696 tig0029852:-35894 None:intergenic
CTACATGGTTGGTGATAGCT+CGG 0.486021 tig0029852:+37171 Msa1442290:CDS
TTGTAATGCTGTTGTCGTCT+CGG 0.487442 tig0029852:+37027 Msa1442290:CDS
GGAGAAGAGAAGAGTGGTGA+AGG 0.487809 tig0029852:-35905 None:intergenic
CTTTCTTCCCCGCCAAACAA+AGG 0.487810 tig0029852:-37271 None:intergenic
CACCCAATTTCCTGATGGGG+TGG 0.488269 tig0029852:-37843 None:intergenic
CTGCTAAACCCTTTGTTTGG+CGG 0.491910 tig0029852:+37262 Msa1442290:CDS
GTAGATTCGAGTAAGGAGAT+TGG 0.497470 tig0029852:-36840 None:intergenic
CATTGAAAGCATCGGACTCT+GGG 0.497517 tig0029852:+37218 Msa1442290:CDS
CCCACTGATTGGCCATCAAA+AGG 0.497804 tig0029852:-38008 None:intergenic
TGGAACTTTCAACCGTGACT+TGG 0.499887 tig0029852:+36733 Msa1442290:CDS
CCGTGGAAGAACATGACAAC+AGG 0.502089 tig0029852:-36935 None:intergenic
TATCCAACCTTGTGTGGCAT+AGG 0.503411 tig0029852:-38340 None:intergenic
GCCAAAGGACTTGAGAAAGC+TGG 0.509171 tig0029852:+37511 Msa1442290:CDS
TTTCTTCCCCGCCAAACAAA+GGG 0.509175 tig0029852:-37270 None:intergenic
TGCCTTTCCTAAGAGTCTTG+TGG 0.514282 tig0029852:+37444 Msa1442290:CDS
GGGTGTTGCGGATAGGTGAA+AGG 0.515509 tig0029852:+37861 Msa1442290:three_prime_UTR
AATCTTCTCCGTCGTCCTGA+TGG 0.518337 tig0029852:+36713 Msa1442290:CDS
CGCAACACCCAATTTCCTGA+TGG 0.518629 tig0029852:-37848 None:intergenic
TATATAACACTTGCCATACA+AGG 0.518680 tig0029852:-38037 None:intergenic
CAAAAGGTCGAAGCCTTGAT+GGG 0.521272 tig0029852:+37419 Msa1442290:CDS
CTTCCTATGCCACACAAGGT+TGG 0.527827 tig0029852:+38337 Msa1442290:three_prime_UTR
TTGAATCATTGGGGTTGAGT+TGG 0.528438 tig0029852:-36063 None:intergenic
TGATACATTGTGTCGTCGAT+TGG 0.529626 tig0029852:+36997 Msa1442290:CDS
AATGGGTTAACTCTAGAACT+TGG 0.530294 tig0029852:+37116 Msa1442290:CDS
ACAGGAATGAAGGGAAAGAA+TGG 0.532589 tig0029852:-35843 None:intergenic
AACGGTGTGTATTTGGATTG+TGG 0.541471 tig0029852:+35790 None:intergenic
TCGAATCTACCGTCCTGTTG+AGG 0.542489 tig0029852:+36853 Msa1442290:CDS
GAAGATCCAAAGGTGAATGA+AGG 0.544391 tig0029852:-35929 None:intergenic
TCACGGTTGAAAGTTCCATC+AGG 0.545176 tig0029852:-36728 None:intergenic
ACTTGGCAGAGTTTCTTGAT+CGG 0.546431 tig0029852:+36750 Msa1442290:CDS
ATCCTTGCGCTTATGAAGAT+GGG 0.546497 tig0029852:+37080 Msa1442290:CDS
GCAACACCCAATTTCCTGAT+GGG 0.551741 tig0029852:-37847 None:intergenic
AAAGCATCAATCATATATGT+TGG 0.556799 tig0029852:+38088 Msa1442290:three_prime_UTR
GGAAATTGGGTGTTGCGGAT+AGG 0.557101 tig0029852:+37854 Msa1442290:three_prime_UTR
AATCCGAAAAGCGTCTTGAT+GGG 0.557814 tig0029852:+37299 Msa1442290:CDS
TCAGAGTGAAAGATAGAGAC+TGG 0.557918 tig0029852:+37332 Msa1442290:CDS
AGCAAATATCCAACCTTGTG+TGG 0.558731 tig0029852:-38346 None:intergenic
GTGTGTATTTGGATTGTGGT+TGG 0.566404 tig0029852:+35794 None:intergenic
GAAGGAGGAGAAGAGAAGAG+TGG 0.568713 tig0029852:-35911 None:intergenic
TAAAGTAAAACAGGAATGAA+GGG 0.568741 tig0029852:-35852 None:intergenic
AGCAGTATATTTCCCAACAC+CGG 0.572967 tig0029852:-37244 None:intergenic
CAGGACGGTAGATTCGAGTA+AGG 0.573555 tig0029852:-36847 None:intergenic
TAGGAAAGGCAACCCCATCA+AGG 0.574933 tig0029852:-37432 None:intergenic
CACCCATCTTCATAAGCGCA+AGG 0.575641 tig0029852:-37082 None:intergenic
AAGGTTCATATCTACATGGT+TGG 0.580511 tig0029852:+37160 Msa1442290:CDS
TGAGCATTTCTCTGTTGTCA+TGG 0.580679 tig0029852:+37597 Msa1442290:CDS
CTTTCCTAAGAGTCTTGTGG+TGG 0.585467 tig0029852:+37447 Msa1442290:CDS
AAGACGTCCATTGCCAAACA+AGG 0.587397 tig0029852:-38220 None:intergenic
ATGGTTGGTGATAGCTCGGG+CGG 0.594503 tig0029852:+37175 Msa1442290:CDS
TACATGGTTGGTGATAGCTC+GGG 0.594607 tig0029852:+37172 Msa1442290:CDS
ACATTGTGTCGTCGATTGGT+TGG 0.596982 tig0029852:+37001 Msa1442290:CDS
AGAAGCATTTGAAGATCCAA+AGG 0.597630 tig0029852:-35939 None:intergenic
CAGCAGTAACAGGCTTCTCA+AGG 0.598120 tig0029852:-36904 None:intergenic
TGGTGGTTCCATTGAACATG+TGG 0.598890 tig0029852:+36660 Msa1442290:CDS
CATCAGGAAATTGGGTGTTG+CGG 0.599996 tig0029852:+37849 Msa1442290:three_prime_UTR
TGAGAAGCCTGTTACTGCTG+AGG 0.600623 tig0029852:+36907 Msa1442290:CDS
ACTCAACCCCAATGATTCAA+AGG 0.601718 tig0029852:+36066 Msa1442290:CDS
ATGTTACCTTTGAATCATTG+GGG 0.602888 tig0029852:-36072 None:intergenic
ACTCAACAAAATCAATCCAA+TGG 0.603090 tig0029852:+36030 Msa1442290:exon
GGGTCTTCCTATGCCACACA+AGG 0.603642 tig0029852:+38333 Msa1442290:three_prime_UTR
GCTATTTCTCGAGCAAGCCA+CGG 0.605537 tig0029852:+37549 Msa1442290:CDS
CCATGTTGCATTGAAAGCAT+CGG 0.608422 tig0029852:+37210 Msa1442290:CDS
GCTAAACCCTTTGTTTGGCG+GGG 0.608927 tig0029852:+37264 Msa1442290:CDS
AAAGAGAAAACACCATCCAC+AGG 0.610297 tig0029852:-36794 None:intergenic
ACCCAATTTCCTGATGGGGT+GGG 0.611604 tig0029852:-37842 None:intergenic
CAAGAAACTCTGCCAAGTCA+CGG 0.617005 tig0029852:-36745 None:intergenic
TGAAAGTTCCATCAGGACGA+CGG 0.623383 tig0029852:-36721 None:intergenic
CAACACCCAATTTCCTGATG+GGG 0.624348 tig0029852:-37846 None:intergenic
TAGCAAGGTTCATATCTACA+TGG 0.626488 tig0029852:+37156 Msa1442290:CDS
TTTAGTGGTTCCCATAAACA+TGG 0.629664 tig0029852:-37912 None:intergenic
GTTCTTCTCCCTCAACAGGA+CGG 0.631361 tig0029852:-36862 None:intergenic
TGGCAATTGGGATATGCCAA+AGG 0.633591 tig0029852:+37496 Msa1442290:CDS
CTTGCGCTTATGAAGATGGG+TGG 0.634175 tig0029852:+37083 Msa1442290:CDS
TCCAGCAAATGCGAATCCTG+TGG 0.635598 tig0029852:+36778 Msa1442290:CDS
CACCACAAGACTCTTAGGAA+AGG 0.635838 tig0029852:-37446 None:intergenic
GATCCAAAGGTGAATGAAGG+AGG 0.637419 tig0029852:-35926 None:intergenic
CCGATGCTTTCAATGCAACA+TGG 0.638442 tig0029852:-37210 None:intergenic
GGTTGGTTGTGGCTATGTTG+CGG 0.645031 tig0029852:+35811 Msa1442290:five_prime_UTR
GGTGGTTCCATTGAACATGT+GGG 0.653078 tig0029852:+36661 Msa1442290:CDS
TCATATAAGTTCCTAATCAG+GGG 0.655979 tig0029852:-37752 None:intergenic
AAAAGGTCGAAGCCTTGATG+GGG 0.659766 tig0029852:+37420 Msa1442290:CDS
ATATAACACTTGCCATACAA+GGG 0.663659 tig0029852:-38036 None:intergenic
TGGTTGGTGATAGCTCGGGC+GGG 0.665839 tig0029852:+37176 Msa1442290:CDS
CTATATAGAGAAAAGATGAA+CGG 0.667855 tig0029852:-38164 None:intergenic
GTTGTCATGTTCTTCCACGG+TGG 0.676583 tig0029852:+36938 Msa1442290:CDS
GCAAATGCGAATCCTGTGGA+TGG 0.677631 tig0029852:+36782 Msa1442290:CDS
ACGTCCATTGCCAAACAAGG+AGG 0.708889 tig0029852:-38217 None:intergenic
TAGCAAGTAAAACCCAACCG+TGG 0.774514 tig0029852:-37566 None:intergenic
AATGTGCAAAACTTCCACCG+TGG 0.777602 tig0029852:-36952 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCATTTTTTAATATTGTTA+TGG + tig0029852:36389-36408 Msa1442290:intron 10.0%
!!! GTTATATATATAACTAATTT+TGG + tig0029852:38052-38071 Msa1442290:three_prime_UTR 10.0%
!!! TTTTGTTTCATACAAATTTA+AGG + tig0029852:36174-36193 Msa1442290:intron 15.0%
!! TCTTAATTTCTCTAAATTAA+TGG + tig0029852:36516-36535 Msa1442290:intron 15.0%
!! CTTAATTTCTCTAAATTAAT+GGG + tig0029852:36517-36536 Msa1442290:intron 15.0%
!!! TTTGGTTTAAAATTTCATTT+TGG + tig0029852:36540-36559 Msa1442290:intron 15.0%
!! ATTAAAAACAAGTTAATAAG+TGG - tig0029852:37719-37738 None:intergenic 15.0%
!!! TATTAACTTGTTTTTAATGT+AGG + tig0029852:37721-37740 Msa1442290:three_prime_UTR 15.0%
!! ACAAAAGAACAAAAAATCAA+AGG - tig0029852:36232-36251 None:intergenic 20.0%
!!! ATCAGTGTAATAAATAGTTT+TGG + tig0029852:36362-36381 Msa1442290:intron 20.0%
!!! TCAGTGTAATAAATAGTTTT+GGG + tig0029852:36363-36382 Msa1442290:intron 20.0%
!!! GATGTAATAGTTTTTTATGT+TGG + tig0029852:36422-36441 Msa1442290:intron 20.0%
!!! TAATAGTTTTTTATGTTGGT+TGG + tig0029852:36426-36445 Msa1442290:intron 20.0%
!!! TATAGCTATATTATGTTTTC+TGG + tig0029852:37815-37834 Msa1442290:three_prime_UTR 20.0%
!!! GTATTGTGTTTTTTTATGTA+TGG + tig0029852:38295-38314 Msa1442290:three_prime_UTR 20.0%
!!! TATGGATAAGATATTTTTCA+GGG + tig0029852:38313-38332 Msa1442290:three_prime_UTR 20.0%
! TAAAGTAAAACAGGAATGAA+GGG - tig0029852:35855-35874 None:intergenic 25.0%
! AGAAAATGCTAAAGTAAAAC+AGG - tig0029852:35864-35883 None:intergenic 25.0%
! AATGTTACCTTTGAATCATT+GGG - tig0029852:36076-36095 None:intergenic 25.0%
! TAATGTTACCTTTGAATCAT+TGG - tig0029852:36077-36096 None:intergenic 25.0%
! TTAGACTTTGTCAATGTTTA+GGG + tig0029852:36473-36492 Msa1442290:intron 25.0%
!!! TTTCTCTAAATTAATGGGTT+TGG + tig0029852:36522-36541 Msa1442290:intron 25.0%
! ATTGTATGCTAACTTGAAAT+TGG - tig0029852:36696-36715 None:intergenic 25.0%
!! CTTTTGATGTTATTGTTGAT+CGG + tig0029852:36813-36832 Msa1442290:CDS 25.0%
!! TTTTGATGTTATTGTTGATC+GGG + tig0029852:36814-36833 Msa1442290:CDS 25.0%
! ATCATATAAGTTCCTAATCA+GGG - tig0029852:37756-37775 None:intergenic 25.0%
! TATCATATAAGTTCCTAATC+AGG - tig0029852:37757-37776 None:intergenic 25.0%
!!! AAAGGTTTTTAGGACAAAAA+AGG + tig0029852:37879-37898 Msa1442290:three_prime_UTR 25.0%
!!! AAGGTTTTTAGGACAAAAAA+GGG + tig0029852:37880-37899 Msa1442290:three_prime_UTR 25.0%
!!! ACTAATTTTGGAACTATGAT+AGG + tig0029852:38064-38083 Msa1442290:three_prime_UTR 25.0%
!!! CTAATTTTGGAACTATGATA+GGG + tig0029852:38065-38084 Msa1442290:three_prime_UTR 25.0%
!! AAAGCATCAATCATATATGT+TGG + tig0029852:38088-38107 Msa1442290:three_prime_UTR 25.0%
! CTATATAGAGAAAAGATGAA+CGG - tig0029852:38167-38186 None:intergenic 25.0%
!!! TCTTTTACTTTTAGCTGTAA+TGG + tig0029852:38264-38283 Msa1442290:three_prime_UTR 25.0%
!! GTATGGATAAGATATTTTTC+AGG + tig0029852:38312-38331 Msa1442290:three_prime_UTR 25.0%
CTAAAGTAAAACAGGAATGA+AGG - tig0029852:35856-35875 None:intergenic 30.0%
AAATGCTTCTTCTTTCTTGA+TGG + tig0029852:35952-35971 Msa1442290:five_prime_UTR 30.0%
! TGATTTTGTTGAGTGTAGAT+CGG - tig0029852:36024-36043 None:intergenic 30.0%
ACTCAACAAAATCAATCCAA+TGG + tig0029852:36030-36049 Msa1442290:exon 30.0%
ATGTTACCTTTGAATCATTG+GGG - tig0029852:36075-36094 None:intergenic 30.0%
ATACTATACTATGTTGCTGT+TGG + tig0029852:36132-36151 Msa1442290:intron 30.0%
GGAAAGAAATAAACATCGTA+CGG - tig0029852:36202-36221 None:intergenic 30.0%
CAAAAAATCAAAGGCGAAAA+AGG - tig0029852:36223-36242 None:intergenic 30.0%
!! GTTTAGTCTTTTTCTTTCGT+TGG + tig0029852:36250-36269 Msa1442290:intron 30.0%
!!! AGTTTTTTATGTTGGTTGGT+TGG + tig0029852:36430-36449 Msa1442290:intron 30.0%
! ACAAAGTCTAAGATAGAAAC+AGG - tig0029852:36464-36483 None:intergenic 30.0%
CTTAGACTTTGTCAATGTTT+AGG + tig0029852:36472-36491 Msa1442290:intron 30.0%
! ATGTTTAGGGTTTGGTTATT+TGG + tig0029852:36486-36505 Msa1442290:intron 30.0%
AATCAGAAACTAGCTACAAA+AGG - tig0029852:36580-36599 None:intergenic 30.0%
TAGATAAAGTTTGATGCAGA+TGG + tig0029852:36640-36659 Msa1442290:intron 30.0%
ACAGAGAAATGCTCATTATT+TGG - tig0029852:37592-37611 None:intergenic 30.0%
TCATATAAGTTCCTAATCAG+GGG - tig0029852:37755-37774 None:intergenic 30.0%
ATTAATTGTGTCTGTGAGAT+TGG + tig0029852:37776-37795 Msa1442290:three_prime_UTR 30.0%
!!! AGGTTTTTAGGACAAAAAAG+GGG + tig0029852:37881-37900 Msa1442290:three_prime_UTR 30.0%
! GAAGATATGGTTCTATTTCT+GGG + tig0029852:37977-37996 Msa1442290:three_prime_UTR 30.0%
ATATAACACTTGCCATACAA+GGG - tig0029852:38039-38058 None:intergenic 30.0%
TATATAACACTTGCCATACA+AGG - tig0029852:38040-38059 None:intergenic 30.0%
ACGTCTTTGCAAATGTAAAT+AGG + tig0029852:38236-38255 Msa1442290:three_prime_UTR 30.0%
!! TTACTTTTAGCTGTAATGGT+AGG + tig0029852:38268-38287 Msa1442290:three_prime_UTR 30.0%
!! TACTTTTAGCTGTAATGGTA+GGG + tig0029852:38269-38288 Msa1442290:three_prime_UTR 30.0%
!! AGAAGCATTTGAAGATCCAA+AGG - tig0029852:35942-35961 None:intergenic 35.0%
TGAGTGTAGATCGGTAAAAA+AGG - tig0029852:36015-36034 None:intergenic 35.0%
AACAAAATCAATCCAATGGC+TGG + tig0029852:36034-36053 Msa1442290:exon 35.0%
!! GTCTTTTTCTTTCGTTGGTT+TGG + tig0029852:36255-36274 Msa1442290:intron 35.0%
!!! TTTTCTTTCGTTGGTTTGGT+TGG + tig0029852:36259-36278 Msa1442290:intron 35.0%
! CTTTGTCAATGTTTAGGGTT+TGG + tig0029852:36478-36497 Msa1442290:intron 35.0%
! TAGGGTTTGGTTATTTGGTT+TGG + tig0029852:36491-36510 Msa1442290:intron 35.0%
ATAAAGTTTGATGCAGATGG+TGG + tig0029852:36643-36662 Msa1442290:intron 35.0%
ATCAAAACCCACATGTTCAA+TGG - tig0029852:36671-36690 None:intergenic 35.0%
! TGGAAGTTTTGCACATTCTT+CGG + tig0029852:36958-36977 Msa1442290:CDS 35.0%
!! AATGGGTTAACTCTAGAACT+TGG + tig0029852:37116-37135 Msa1442290:CDS 35.0%
GCAGAGTAAAAAAGATAGCA+AGG + tig0029852:37141-37160 Msa1442290:CDS 35.0%
TAGCAAGGTTCATATCTACA+TGG + tig0029852:37156-37175 Msa1442290:CDS 35.0%
AAGGTTCATATCTACATGGT+TGG + tig0029852:37160-37179 Msa1442290:CDS 35.0%
ATACTGCTAAACCCTTTGTT+TGG + tig0029852:37259-37278 Msa1442290:CDS 35.0%
TGAAAGATAGAGACTGGTAT+TGG + tig0029852:37338-37357 Msa1442290:CDS 35.0%
! TTAACTTTTGCCACACAAGA+AGG + tig0029852:37659-37678 Msa1442290:three_prime_UTR 35.0%
! TAACTTTTGCCACACAAGAA+GGG + tig0029852:37660-37679 Msa1442290:three_prime_UTR 35.0%
!!! GGGTTTTAGAAAGATTGTGT+AGG + tig0029852:37682-37701 Msa1442290:three_prime_UTR 35.0%
TTTAGTGGTTCCCATAAACA+TGG - tig0029852:37915-37934 None:intergenic 35.0%
!! TTTTGGCTGAAAGTCAAAGT+GGG - tig0029852:37948-37967 None:intergenic 35.0%
!!! TTTTTGGCTGAAAGTCAAAG+TGG - tig0029852:37949-37968 None:intergenic 35.0%
! TTTGACTTTCAGCCAAAAAG+AGG + tig0029852:37950-37969 Msa1442290:three_prime_UTR 35.0%
! ATATCTTCCTCTCCTCTTTT+TGG - tig0029852:37965-37984 None:intergenic 35.0%
AAAAAGAGGAGAGGAAGATA+TGG + tig0029852:37964-37983 Msa1442290:three_prime_UTR 35.0%
! GGAAGATATGGTTCTATTTC+TGG + tig0029852:37976-37995 Msa1442290:three_prime_UTR 35.0%
ACAGGAATGAAGGGAAAGAA+TGG - tig0029852:35846-35865 None:intergenic 40.0%
GAGTGGTGAAGGATAAGAAA+AGG - tig0029852:35897-35916 None:intergenic 40.0%
GAAGATCCAAAGGTGAATGA+AGG - tig0029852:35932-35951 None:intergenic 40.0%
TTGAATCATTGGGGTTGAGT+TGG - tig0029852:36066-36085 None:intergenic 40.0%
ACTCAACCCCAATGATTCAA+AGG + tig0029852:36066-36085 Msa1442290:CDS 40.0%
ACTTGGCAGAGTTTCTTGAT+CGG + tig0029852:36750-36769 Msa1442290:CDS 40.0%
AAAGAGAAAACACCATCCAC+AGG - tig0029852:36797-36816 None:intergenic 40.0%
GTAGATTCGAGTAAGGAGAT+TGG - tig0029852:36843-36862 None:intergenic 40.0%
TGATACATTGTGTCGTCGAT+TGG + tig0029852:36997-37016 Msa1442290:CDS 40.0%
TTGTAATGCTGTTGTCGTCT+CGG + tig0029852:37027-37046 Msa1442290:CDS 40.0%
TTGTCGTCTCGGTGAATTAT+AGG + tig0029852:37038-37057 Msa1442290:CDS 40.0%
TATCCTTGCGCTTATGAAGA+TGG + tig0029852:37079-37098 Msa1442290:CDS 40.0%
ATCCTTGCGCTTATGAAGAT+GGG + tig0029852:37080-37099 Msa1442290:CDS 40.0%
ATGGGTGGAAAGCTGTTAAA+TGG + tig0029852:37098-37117 Msa1442290:CDS 40.0%
TGGGTGGAAAGCTGTTAAAT+GGG + tig0029852:37099-37118 Msa1442290:CDS 40.0%
! CCATGTTGCATTGAAAGCAT+CGG + tig0029852:37210-37229 Msa1442290:CDS 40.0%
AGCAGTATATTTCCCAACAC+CGG - tig0029852:37247-37266 None:intergenic 40.0%
!! AATCCGAAAAGCGTCTTGAT+GGG + tig0029852:37299-37318 Msa1442290:CDS 40.0%
TCAGAGTGAAAGATAGAGAC+TGG + tig0029852:37332-37351 Msa1442290:CDS 40.0%
! TGTAACCCTTTTGGTCCAAA+AGG + tig0029852:37403-37422 Msa1442290:CDS 40.0%
! TTCGACCTTTTGGACCAAAA+GGG - tig0029852:37411-37430 None:intergenic 40.0%
GTTTGGATCTTGTTCAGGAT+TGG + tig0029852:37476-37495 Msa1442290:CDS 40.0%
! TCTTGTTCAGGATTGGCAAT+TGG + tig0029852:37483-37502 Msa1442290:CDS 40.0%
! CTTGTTCAGGATTGGCAATT+GGG + tig0029852:37484-37503 Msa1442290:CDS 40.0%
TGAGCATTTCTCTGTTGTCA+TGG + tig0029852:37597-37616 Msa1442290:CDS 40.0%
! AACTTTTGCCACACAAGAAG+GGG + tig0029852:37661-37680 Msa1442290:three_prime_UTR 40.0%
! CGGATAGGTGAAAGGTTTTT+AGG + tig0029852:37869-37888 Msa1442290:three_prime_UTR 40.0%
GTGGGTAATCACAACTTTAG+TGG - tig0029852:37930-37949 None:intergenic 40.0%
AGCAAATATCCAACCTTGTG+TGG - tig0029852:38349-38368 None:intergenic 40.0%
TCTCCTCCTTCATTCACCTT+TGG + tig0029852:35923-35942 Msa1442290:five_prime_UTR 45.0%
GATCCAAAGGTGAATGAAGG+AGG - tig0029852:35929-35948 None:intergenic 45.0%
AGTTGGTTACTTCCAGCCAT+TGG - tig0029852:36049-36068 None:intergenic 45.0%
TGGTGGTTCCATTGAACATG+TGG + tig0029852:36660-36679 Msa1442290:CDS 45.0%
GGTGGTTCCATTGAACATGT+GGG + tig0029852:36661-36680 Msa1442290:CDS 45.0%
TGAAAGTTCCATCAGGACGA+CGG - tig0029852:36724-36743 None:intergenic 45.0%
TCACGGTTGAAAGTTCCATC+AGG - tig0029852:36731-36750 None:intergenic 45.0%
TGGAACTTTCAACCGTGACT+TGG + tig0029852:36733-36752 Msa1442290:CDS 45.0%
CAAGAAACTCTGCCAAGTCA+CGG - tig0029852:36748-36767 None:intergenic 45.0%
TGTTGTTCTTCTCCCTCAAC+AGG - tig0029852:36869-36888 None:intergenic 45.0%
CCTGTTGTCATGTTCTTCCA+CGG + tig0029852:36935-36954 Msa1442290:CDS 45.0%
AATGTGCAAAACTTCCACCG+TGG - tig0029852:36955-36974 None:intergenic 45.0%
! ACATTGTGTCGTCGATTGGT+TGG + tig0029852:37001-37020 Msa1442290:CDS 45.0%
! GCGCAAGGATACCTATTTTC+AGG - tig0029852:37070-37089 None:intergenic 45.0%
!! CTACATGGTTGGTGATAGCT+CGG + tig0029852:37171-37190 Msa1442290:CDS 45.0%
!! TACATGGTTGGTGATAGCTC+GGG + tig0029852:37172-37191 Msa1442290:CDS 45.0%
CCGATGCTTTCAATGCAACA+TGG - tig0029852:37213-37232 None:intergenic 45.0%
!! CATTGAAAGCATCGGACTCT+GGG + tig0029852:37218-37237 Msa1442290:CDS 45.0%
! CTGCTAAACCCTTTGTTTGG+CGG + tig0029852:37262-37281 Msa1442290:CDS 45.0%
! TGCTAAACCCTTTGTTTGGC+GGG + tig0029852:37263-37282 Msa1442290:CDS 45.0%
TTTCTTCCCCGCCAAACAAA+GGG - tig0029852:37273-37292 None:intergenic 45.0%
!! GAATCCGAAAAGCGTCTTGA+TGG + tig0029852:37298-37317 Msa1442290:CDS 45.0%
! TCTCCCATCAAGACGCTTTT+CGG - tig0029852:37305-37324 None:intergenic 45.0%
! TGGAGAGCTTTTCTTCCTGA+AGG + tig0029852:37358-37377 Msa1442290:CDS 45.0%
! GGAGAGCTTTTCTTCCTGAA+GGG + tig0029852:37359-37378 Msa1442290:CDS 45.0%
! GAGAGCTTTTCTTCCTGAAG+GGG + tig0029852:37360-37379 Msa1442290:CDS 45.0%
! CTTCGACCTTTTGGACCAAA+AGG - tig0029852:37412-37431 None:intergenic 45.0%
CAAAAGGTCGAAGCCTTGAT+GGG + tig0029852:37419-37438 Msa1442290:CDS 45.0%
AAAAGGTCGAAGCCTTGATG+GGG + tig0029852:37420-37439 Msa1442290:CDS 45.0%
TGCCTTTCCTAAGAGTCTTG+TGG + tig0029852:37444-37463 Msa1442290:CDS 45.0%
CACCACAAGACTCTTAGGAA+AGG - tig0029852:37449-37468 None:intergenic 45.0%
! CTTTCCTAAGAGTCTTGTGG+TGG + tig0029852:37447-37466 Msa1442290:CDS 45.0%
!! TGCTGGTTTGGATCTTGTTC+AGG + tig0029852:37471-37490 Msa1442290:CDS 45.0%
TGGCAATTGGGATATGCCAA+AGG + tig0029852:37496-37515 Msa1442290:CDS 45.0%
TCCAGCTTTCTCAAGTCCTT+TGG - tig0029852:37515-37534 None:intergenic 45.0%
TAGCAAGTAAAACCCAACCG+TGG - tig0029852:37569-37588 None:intergenic 45.0%
! ACTTTTGCCACACAAGAAGG+GGG + tig0029852:37662-37681 Msa1442290:three_prime_UTR 45.0%
! TCTAAAACCCCCTTCTTGTG+TGG - tig0029852:37672-37691 None:intergenic 45.0%
CAACACCCAATTTCCTGATG+GGG - tig0029852:37849-37868 None:intergenic 45.0%
GCAACACCCAATTTCCTGAT+GGG - tig0029852:37850-37869 None:intergenic 45.0%
! CATCAGGAAATTGGGTGTTG+CGG + tig0029852:37849-37868 Msa1442290:three_prime_UTR 45.0%
AGGACAAAAAAGGGGAGCTA+TGG + tig0029852:37889-37908 Msa1442290:three_prime_UTR 45.0%
GGAGCTATGGCCATGTTTAT+GGG + tig0029852:37902-37921 Msa1442290:three_prime_UTR 45.0%
CTTTCAGCCAAAAAGAGGAG+AGG + tig0029852:37955-37974 Msa1442290:three_prime_UTR 45.0%
! TGGGCTTTCTGACCTTTTGA+TGG + tig0029852:37996-38015 Msa1442290:three_prime_UTR 45.0%
!! ACCTTTTGATGGCCAATCAG+TGG + tig0029852:38007-38026 Msa1442290:three_prime_UTR 45.0%
!! CCTTTTGATGGCCAATCAGT+GGG + tig0029852:38008-38027 Msa1442290:three_prime_UTR 45.0%
!! CTTTTGATGGCCAATCAGTG+GGG + tig0029852:38009-38028 Msa1442290:three_prime_UTR 45.0%
CTTCAGTTGTCCTCCTTGTT+TGG + tig0029852:38207-38226 Msa1442290:three_prime_UTR 45.0%
! TTGTCCTCCTTGTTTGGCAA+TGG + tig0029852:38213-38232 Msa1442290:three_prime_UTR 45.0%
AAGACGTCCATTGCCAAACA+AGG - tig0029852:38223-38242 None:intergenic 45.0%
TATCCAACCTTGTGTGGCAT+AGG - tig0029852:38343-38362 None:intergenic 45.0%
! GGTTGGTTGTGGCTATGTTG+CGG + tig0029852:35811-35830 Msa1442290:five_prime_UTR 50.0%
TGGCTATGTTGCGGTGTGAT+TGG + tig0029852:35820-35839 Msa1442290:five_prime_UTR 50.0%
GGAGAAGAGAAGAGTGGTGA+AGG - tig0029852:35908-35927 None:intergenic 50.0%
GAAGGAGGAGAAGAGAAGAG+TGG - tig0029852:35914-35933 None:intergenic 50.0%
AATCTTCTCCGTCGTCCTGA+TGG + tig0029852:36713-36732 Msa1442290:CDS 50.0%
TCCAGCAAATGCGAATCCTG+TGG + tig0029852:36778-36797 Msa1442290:CDS 50.0%
TCCACAGGATTCGCATTTGC+TGG - tig0029852:36782-36801 None:intergenic 50.0%
GCAAATGCGAATCCTGTGGA+TGG + tig0029852:36782-36801 Msa1442290:CDS 50.0%
CAGGACGGTAGATTCGAGTA+AGG - tig0029852:36850-36869 None:intergenic 50.0%
TCGAATCTACCGTCCTGTTG+AGG + tig0029852:36853-36872 Msa1442290:CDS 50.0%
CGAATCTACCGTCCTGTTGA+GGG + tig0029852:36854-36873 Msa1442290:CDS 50.0%
GTTCTTCTCCCTCAACAGGA+CGG - tig0029852:36865-36884 None:intergenic 50.0%
CAGCAGTAACAGGCTTCTCA+AGG - tig0029852:36907-36926 None:intergenic 50.0%
TGAGAAGCCTGTTACTGCTG+AGG + tig0029852:36907-36926 Msa1442290:CDS 50.0%
GGAAGAACCTCAGCAGTAAC+AGG - tig0029852:36917-36936 None:intergenic 50.0%
CCGTGGAAGAACATGACAAC+AGG - tig0029852:36938-36957 None:intergenic 50.0%
GTTGTCATGTTCTTCCACGG+TGG + tig0029852:36938-36957 Msa1442290:CDS 50.0%
ATAGGCGTGCGCCTGAAAAT+AGG + tig0029852:37056-37075 Msa1442290:CDS 50.0%
CACCCATCTTCATAAGCGCA+AGG - tig0029852:37085-37104 None:intergenic 50.0%
CTTGCGCTTATGAAGATGGG+TGG + tig0029852:37083-37102 Msa1442290:CDS 50.0%
!! GCATTGAAAGCATCGGACTC+TGG + tig0029852:37217-37236 Msa1442290:CDS 50.0%
! GCTAAACCCTTTGTTTGGCG+GGG + tig0029852:37264-37283 Msa1442290:CDS 50.0%
CTTTCTTCCCCGCCAAACAA+AGG - tig0029852:37274-37293 None:intergenic 50.0%
TGATCTCTGTCTTCCCCTTC+AGG - tig0029852:37376-37395 None:intergenic 50.0%
! CATCACGCGTGTAACCCTTT+TGG + tig0029852:37394-37413 Msa1442290:CDS 50.0%
! CCATCAAGGCTTCGACCTTT+TGG - tig0029852:37421-37440 None:intergenic 50.0%
CCAAAAGGTCGAAGCCTTGA+TGG + tig0029852:37418-37437 Msa1442290:CDS 50.0%
TAGGAAAGGCAACCCCATCA+AGG - tig0029852:37435-37454 None:intergenic 50.0%
GCAACCACCACAAGACTCTT+AGG - tig0029852:37454-37473 None:intergenic 50.0%
! AAGAGTCTTGTGGTGGTTGC+TGG + tig0029852:37454-37473 Msa1442290:CDS 50.0%
! TCTTGTGGTGGTTGCTGGTT+TGG + tig0029852:37459-37478 Msa1442290:CDS 50.0%
GCCAAAGGACTTGAGAAAGC+TGG + tig0029852:37511-37530 Msa1442290:CDS 50.0%
!! GCTATTTCTCGAGCAAGCCA+CGG + tig0029852:37549-37568 Msa1442290:CDS 50.0%
AGGACTTTGCTCCCCTGATT+AGG + tig0029852:37741-37760 Msa1442290:three_prime_UTR 50.0%
ACCCACCCCATCAGGAAATT+GGG + tig0029852:37841-37860 Msa1442290:three_prime_UTR 50.0%
ACCCAATTTCCTGATGGGGT+GGG - tig0029852:37845-37864 None:intergenic 50.0%
CGCAACACCCAATTTCCTGA+TGG - tig0029852:37851-37870 None:intergenic 50.0%
! GGAAATTGGGTGTTGCGGAT+AGG + tig0029852:37854-37873 Msa1442290:three_prime_UTR 50.0%
GGGAGCTATGGCCATGTTTA+TGG + tig0029852:37901-37920 Msa1442290:three_prime_UTR 50.0%
! CCCACTGATTGGCCATCAAA+AGG - tig0029852:38011-38030 None:intergenic 50.0%
ACGTCCATTGCCAAACAAGG+AGG - tig0029852:38220-38239 None:intergenic 50.0%
CTTCCTATGCCACACAAGGT+TGG + tig0029852:38337-38356 Msa1442290:three_prime_UTR 50.0%
!! ATGGTTGGTGATAGCTCGGG+CGG + tig0029852:37175-37194 Msa1442290:CDS 55.0%
!! AGCATCGGACTCTGGGATTC+CGG + tig0029852:37225-37244 Msa1442290:CDS 55.0%
!! GACTCTGGGATTCCGGTGTT+GGG + tig0029852:37232-37251 Msa1442290:CDS 55.0%
TTTCTCGAGCAAGCCACGGT+TGG + tig0029852:37553-37572 Msa1442290:CDS 55.0%
TTCTCGAGCAAGCCACGGTT+GGG + tig0029852:37554-37573 Msa1442290:CDS 55.0%
CACCCACCCCATCAGGAAAT+TGG + tig0029852:37840-37859 Msa1442290:three_prime_UTR 55.0%
CACCCAATTTCCTGATGGGG+TGG - tig0029852:37846-37865 None:intergenic 55.0%
! GGGTGTTGCGGATAGGTGAA+AGG + tig0029852:37861-37880 Msa1442290:three_prime_UTR 55.0%
GGGTCTTCCTATGCCACACA+AGG + tig0029852:38333-38352 Msa1442290:three_prime_UTR 55.0%
!! TGGTTGGTGATAGCTCGGGC+GGG + tig0029852:37176-37195 Msa1442290:CDS 60.0%
!! GGACTCTGGGATTCCGGTGT+TGG + tig0029852:37231-37250 Msa1442290:CDS 60.0%
CAAGGGCAAGCCCCACTGAT+TGG - tig0029852:38022-38041 None:intergenic 60.0%
CAGTGGGGCTTGCCCTTGTA+TGG + tig0029852:38024-38043 Msa1442290:three_prime_UTR 60.0%
! TCTGGAGCACCCACCCCATC+AGG + tig0029852:37833-37852 Msa1442290:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
tig0029852 gene 35802 38429 35802 ID=Msa1442290;Name=Msa1442290
tig0029852 mRNA 35802 38429 35802 ID=Msa1442290-mRNA-1;Parent=Msa1442290;Name=Msa1442290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=247|1|1|1|0|1|2|772|345
tig0029852 exon 35802 36087 35802 ID=Msa1442290-mRNA-1:exon:13251;Parent=Msa1442290-mRNA-1
tig0029852 exon 36659 38429 36659 ID=Msa1442290-mRNA-1:exon:13252;Parent=Msa1442290-mRNA-1
tig0029852 five_prime_UTR 35802 36048 35802 ID=Msa1442290-mRNA-1:five_prime_utr;Parent=Msa1442290-mRNA-1
tig0029852 CDS 36049 36087 36049 ID=Msa1442290-mRNA-1:cds;Parent=Msa1442290-mRNA-1
tig0029852 CDS 36659 37657 36659 ID=Msa1442290-mRNA-1:cds;Parent=Msa1442290-mRNA-1
tig0029852 three_prime_UTR 37658 38429 37658 ID=Msa1442290-mRNA-1:three_prime_utr;Parent=Msa1442290-mRNA-1
Gene Sequence

>Msa1442290

ATGGCTGGAAGTAACCAACTCAACCCCAATGATTCAAAGATGGTGGTTCCATTGAACATGTGGGTTTTGATCTCCAATTTCAAGTTAGCATACAATCTTCTCCGTCGTCCTGATGGAACTTTCAACCGTGACTTGGCAGAGTTTCTTGATCGGAAAGTTCCAGCAAATGCGAATCCTGTGGATGGTGTTTTCTCTTTTGATGTTATTGTTGATCGGGAAACCAATCTCCTTACTCGAATCTACCGTCCTGTTGAGGGAGAAGAACAACATGTGAACATTGTTGACCTTGAGAAGCCTGTTACTGCTGAGGTTCTTCCTGTTGTCATGTTCTTCCACGGTGGAAGTTTTGCACATTCTTCGGCTAACAGTGCTATTTATGATACATTGTGTCGTCGATTGGTTGGTATTTGTAATGCTGTTGTCGTCTCGGTGAATTATAGGCGTGCGCCTGAAAATAGGTATCCTTGCGCTTATGAAGATGGGTGGAAAGCTGTTAAATGGGTTAACTCTAGAACTTGGCTGCAGAGTAAAAAAGATAGCAAGGTTCATATCTACATGGTTGGTGATAGCTCGGGCGGGAACATTGTGCACCATGTTGCATTGAAAGCATCGGACTCTGGGATTCCGGTGTTGGGAAATATACTGCTAAACCCTTTGTTTGGCGGGGAAGAAAGAACAGAATCCGAAAAGCGTCTTGATGGGAGATATTTTGTCAGAGTGAAAGATAGAGACTGGTATTGGAGAGCTTTTCTTCCTGAAGGGGAAGACAGAGATCATCACGCGTGTAACCCTTTTGGTCCAAAAGGTCGAAGCCTTGATGGGGTTGCCTTTCCTAAGAGTCTTGTGGTGGTTGCTGGTTTGGATCTTGTTCAGGATTGGCAATTGGGATATGCCAAAGGACTTGAGAAAGCTGGACAAAATGTGAAGTTGCTATTTCTCGAGCAAGCCACGGTTGGGTTTTACTTGCTACCAAATAATGAGCATTTCTCTGTTGTCATGGATGAGATAAAACATTTTGTCAACTCTGACTGTTCATAG

Protein sequence

>Msa1442290

MAGSNQLNPNDSKMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDGVFSFDVIVDRETNLLTRIYRPVEGEEQHVNIVDLEKPVTAEVLPVVMFFHGGSFAHSSANSAIYDTLCRRLVGICNAVVVSVNYRRAPENRYPCAYEDGWKAVKWVNSRTWLQSKKDSKVHIYMVGDSSGGNIVHHVALKASDSGIPVLGNILLNPLFGGEERTESEKRLDGRYFVRVKDRDWYWRAFLPEGEDRDHHACNPFGPKGRSLDGVAFPKSLVVVAGLDLVQDWQLGYAKGLEKAGQNVKLLFLEQATVGFYLLPNNEHFSVVMDEIKHFVNSDCS*