AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1201990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201990 MtrunA17_Chr8g0372381 96.933 489 12 1 2 490 3 488 0.0 976
Msa1201990 MtrunA17_Chr2g0328781 56.871 473 204 0 8 480 20 492 0.0 586
Msa1201990 MtrunA17_Chr4g0032441 56.616 461 200 0 12 472 9 469 0.0 529
Msa1201990 MtrunA17_Chr3g0124811 48.093 472 242 1 5 476 15 483 1.78e-166 479
Msa1201990 MtrunA17_Chr8g0384741 47.761 469 242 1 12 480 73 538 6.69e-160 464
Msa1201990 MtrunA17_Chr1g0159811 49.631 407 202 1 12 418 20 423 1.37e-143 421
Msa1201990 MtrunA17_Chr3g0129271 89.062 192 21 0 174 365 30 221 2.38e-120 353
Msa1201990 MtrunA17_Chr4g0009161 90.654 107 9 1 174 279 115 221 1.92e-60 197
Msa1201990 MtrunA17_Chr2g0294411 28.936 470 303 10 7 461 87 540 2.10e-48 176
Msa1201990 MtrunA17_Chr4g0059521 29.384 422 281 10 30 442 74 487 8.50e-39 147
Msa1201990 MtrunA17_Chr3g0118081 29.343 426 284 10 24 440 98 515 3.69e-37 143
Msa1201990 MtrunA17_Chr3g0118121 29.263 434 290 10 16 440 60 485 6.99e-37 142
Msa1201990 MtrunA17_Chr2g0310091 29.912 341 219 11 104 434 193 523 1.32e-36 142
Msa1201990 MtrunA17_Chr4g0059221 28.818 406 256 11 61 441 138 535 5.21e-35 137
Msa1201990 MtrunA17_Chr3g0117861 29.539 369 243 9 84 441 171 533 7.02e-34 134
Msa1201990 MtrunA17_Chr8g0365221 28.414 454 286 15 7 441 99 532 8.11e-34 134
Msa1201990 MtrunA17_Chr8g0390651 27.409 467 297 16 7 456 61 502 1.04e-30 124
Msa1201990 MtrunA17_Chr6g0485301 30.460 348 221 11 105 441 156 493 3.04e-30 123
Msa1201990 MtrunA17_Chr8g0390631 29.275 345 229 9 105 441 148 485 5.83e-30 122
Msa1201990 MtrunA17_Chr6g0485311 29.942 344 226 10 105 440 154 490 1.25e-27 115
Msa1201990 MtrunA17_Chr4g0074171 26.037 434 279 14 13 423 53 467 4.85e-20 92.8
Msa1201990 MtrunA17_Chr1g0149961 28.571 322 212 9 108 423 158 467 8.12e-20 92.0
Msa1201990 MtrunA17_Chr4g0049641 25.635 394 271 10 19 401 92 474 3.39e-19 90.5
Msa1201990 MtrunA17_Chr2g0300801 26.346 353 231 12 108 446 155 492 1.16e-18 88.6
Msa1201990 MtrunA17_Chr2g0279751 25.313 399 266 13 19 401 65 447 2.10e-18 87.8
Msa1201990 MtrunA17_Chr1g0159821 48.387 62 32 0 7 68 15 76 5.40e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201990 AT4G36250.1 58.811 488 197 1 1 488 1 484 0.0 627
Msa1201990 AT1G44170.1 48.827 469 237 1 7 475 11 476 1.23e-164 474
Msa1201990 AT1G44170.2 48.827 469 237 1 7 475 11 476 1.23e-164 474
Msa1201990 AT4G34240.4 48.626 473 240 1 5 477 57 526 2.07e-158 461
Msa1201990 AT4G34240.1 48.626 473 240 1 5 477 72 541 2.23e-158 461
Msa1201990 AT1G44170.3 50.617 405 197 1 71 475 12 413 9.88e-151 437
Msa1201990 AT4G34240.3 50.758 396 192 1 82 477 7 399 5.24e-140 409
Msa1201990 AT4G34240.2 49.068 322 161 1 5 326 72 390 4.19e-102 311
Msa1201990 AT3G66658.1 31.279 438 276 9 6 427 86 514 2.51e-50 180
Msa1201990 AT3G66658.2 30.734 436 281 7 6 427 86 514 3.96e-50 181
Msa1201990 AT1G74920.2 32.619 420 266 10 30 440 69 480 1.66e-46 169
Msa1201990 AT1G74920.1 32.619 420 266 10 30 440 74 485 2.15e-46 169
Msa1201990 AT3G48170.1 30.260 423 276 11 30 442 74 487 2.31e-41 155
Msa1201990 AT1G79440.1 31.250 352 224 11 104 444 184 528 2.87e-38 147
Msa1201990 AT1G23800.1 27.876 452 291 13 7 441 92 525 1.01e-33 134
Msa1201990 AT3G48000.1 28.919 370 244 10 84 441 167 529 4.94e-33 132
Msa1201990 AT3G24503.1 27.874 348 236 11 102 441 152 492 2.09e-29 121
Msa1201990 AT2G24270.2 29.375 320 212 8 108 423 198 507 8.57e-22 99.0
Msa1201990 AT2G24270.3 28.402 338 228 8 108 441 158 485 1.52e-21 97.8
Msa1201990 AT2G24270.1 28.402 338 228 8 108 441 158 485 1.52e-21 97.8
Msa1201990 AT2G24270.4 28.402 338 228 8 108 441 158 485 1.73e-21 97.8
Msa1201990 AT1G54100.2 26.136 352 233 12 108 446 154 491 1.40e-19 92.0
Msa1201990 AT1G54100.1 26.136 352 233 12 108 446 154 491 1.40e-19 92.0
Msa1201990 AT2G14170.2 23.297 455 314 12 7 443 43 480 3.74e-15 78.2
Msa1201990 AT1G23800.2 29.210 291 175 11 7 282 92 366 4.62e-15 77.4
Msa1201990 AT2G14170.1 23.297 455 314 12 7 443 152 589 7.61e-15 77.4
Msa1201990 AT2G14170.3 22.983 409 287 10 7 401 152 546 2.33e-14 75.9

Find 94 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACCCTCAATGACCTTTA+TGG 0.167477 8_1:-55337364 None:intergenic
ATTGATTTGCAATACATTAT+AGG 0.167573 8_1:+55340156 Msa1201990:three_prime_UTR
GCAGATACTGCCCCAATTAT+TGG 0.191437 8_1:-55337249 None:intergenic
TTGGCATTGGATCCAATAAT+TGG 0.193325 8_1:+55337237 Msa1201990:CDS
TTTCTTGAAAGTTGCATCTT+TGG 0.201229 8_1:-55339241 None:intergenic
GGTGTTGGTCAGAGTGGTTT+TGG 0.239610 8_1:+55339887 Msa1201990:CDS
GCATAAATTGCAAGAGGTTT+TGG 0.241150 8_1:-55339213 None:intergenic
CCACCTAGCTCTAGAGTAAC+AGG 0.301770 8_1:-55337821 None:intergenic
ATATAAGATCCTACCTTCTT+AGG 0.324184 8_1:-55335194 None:intergenic
AAAATCAGCACAAAACTCTT+TGG 0.349014 8_1:+55335148 Msa1201990:CDS
AAAGCTCTTTACCAAGATCT+TGG 0.352241 8_1:+55334831 Msa1201990:CDS
TATACAGGTGAATAAAATTC+AGG 0.355113 8_1:+55339164 Msa1201990:intron
AGAACTACACCAAGTGGTTC+TGG 0.378314 8_1:-55335495 None:intergenic
GTTGCTGCTTCAATAGTTCA+TGG 0.387966 8_1:+55338464 Msa1201990:CDS
ACACCAATGTTGTTCATTGT+AGG 0.390428 8_1:-55334678 None:intergenic
GCATACAGACTGAATTACTT+TGG 0.403077 8_1:+55340040 Msa1201990:CDS
CATGCTGGAGCTTGCTCTGA+TGG 0.406820 8_1:-55337294 None:intergenic
TGGCATTGGATCCAATAATT+GGG 0.411604 8_1:+55337238 Msa1201990:CDS
CAAATTAGAATTCCTCAGAT+TGG 0.413705 8_1:+55340018 Msa1201990:CDS
TTGAGACAGTACTTCAAAAC+AGG 0.415007 8_1:+55334726 Msa1201990:CDS
TTATGTGATACACTACCATT+TGG 0.419289 8_1:+55339863 Msa1201990:CDS
CATATGGTGCTACATATGTT+AGG 0.420594 8_1:+55340073 Msa1201990:CDS
GATACCTTGGCTCAATTTCA+AGG 0.428430 8_1:-55339979 None:intergenic
GGTGGATCTAACAATATTGT+AGG 0.428757 8_1:-55339002 None:intergenic
AAGAATAGTAGGAGCAAAGT+GGG 0.429810 8_1:+55338149 Msa1201990:CDS
CTTAGACACTAATGCCATAA+AGG 0.430741 8_1:+55337350 Msa1201990:CDS
ATGGCAGTGAAAAGAATAGT+AGG 0.440145 8_1:+55338138 Msa1201990:CDS
GTGAAAGGCGTCTGAAAATA+CGG 0.443663 8_1:-55340224 None:intergenic
TAAGTAGTGAGGAAGGATAT+TGG 0.446928 8_1:-55337331 None:intergenic
GGAGAAGTACTCATCTGAAT+TGG 0.449394 8_1:+55338221 Msa1201990:CDS
ACACTATGCAGTGTTGGCAT+TGG 0.456843 8_1:+55337224 Msa1201990:intron
AAGCTCTTTACCAAGATCTT+GGG 0.464763 8_1:+55334832 Msa1201990:CDS
CAGGATGCTTCCCAAGATCT+TGG 0.467321 8_1:-55334842 None:intergenic
TGTAGTGGACAAGCATGTAT+AGG 0.471434 8_1:+55338177 Msa1201990:CDS
ATCATGACGGAAGAAATCTT+TGG 0.471719 8_1:+55339038 Msa1201990:CDS
GAAAGATCATCAAATATAGC+AGG 0.476851 8_1:-55337851 None:intergenic
CTTTGGACTAGTGCTACATA+TGG 0.480977 8_1:+55340057 Msa1201990:CDS
ATAGAGAAGCATTGTAGTTG+AGG 0.483711 8_1:-55340122 None:intergenic
ACACTACCATTTGGAGGTGT+TGG 0.484552 8_1:+55339872 Msa1201990:CDS
TCATCACGGTAAGCTTCAAC+AGG 0.489627 8_1:-55334861 None:intergenic
CTGATACTCACAGTGATCAC+TGG 0.503261 8_1:-55339071 None:intergenic
TGTGATACACTACCATTTGG+AGG 0.510788 8_1:+55339866 Msa1201990:CDS
TTGAGCCAAGGTATCCTCCT+TGG 0.511711 8_1:+55339987 Msa1201990:CDS
ATGTTTGAAACCACGGTGAA+AGG 0.514160 8_1:-55340239 None:intergenic
AATCGATTATTTGCTTGTTG+AGG 0.518086 8_1:+55338200 Msa1201990:CDS
ATAATTGGGGCAGTATCTGC+TGG 0.528260 8_1:+55337252 Msa1201990:CDS
AAAATGGATGGCTCCTAAGA+AGG 0.533456 8_1:+55335181 Msa1201990:CDS
TTGGCTCAATTTCAAGGCAA+AGG 0.542814 8_1:-55339973 None:intergenic
TGAACTACCTTAAAATCTGA+AGG 0.546236 8_1:-55337878 None:intergenic
GGTTAAGTAGAGCTTTGAGC+TGG 0.549576 8_1:-55334779 None:intergenic
CTCTGACCAACACCTCCAAA+TGG 0.550552 8_1:-55339878 None:intergenic
TAATGCCATAAAGGTCATTG+AGG 0.552612 8_1:+55337359 Msa1201990:CDS
GCAAGAAATGAAGAGCATGC+TGG 0.556083 8_1:-55337309 None:intergenic
TCTAATTTGAACTTACTCCA+AGG 0.558654 8_1:-55340004 None:intergenic
TTACTCCAAGGAGGATACCT+TGG 0.560424 8_1:-55339992 None:intergenic
ACTCCTGTTACTCTAGAGCT+AGG 0.562087 8_1:+55337818 Msa1201990:CDS
TTTGGAGGTGTTGGTCAGAG+TGG 0.564157 8_1:+55339881 Msa1201990:CDS
CTATTGAAGCAGCAACTAGA+GGG 0.568707 8_1:-55338457 None:intergenic
AAAGAATAGTAGGAGCAAAG+TGG 0.572509 8_1:+55338148 Msa1201990:CDS
ATTGTATCAGAAACTTCCTC+AGG 0.573193 8_1:+55339267 Msa1201990:CDS
GTGAATGCATAAATTGCAAG+AGG 0.573538 8_1:-55339219 None:intergenic
ACAGTGATCACTGGAAGTAG+TGG 0.575288 8_1:-55339062 None:intergenic
GGCATTGGATCCAATAATTG+GGG 0.578716 8_1:+55337239 Msa1201990:CDS
GCAAAGTGGGGAGTCTGTAG+TGG 0.579608 8_1:+55338162 Msa1201990:CDS
AATGCCATAAAGGTCATTGA+GGG 0.579952 8_1:+55337360 Msa1201990:CDS
AATCCTACAATGAACAACAT+TGG 0.581075 8_1:+55334675 Msa1201990:exon
ATGACTATGCTTGCCACACG+TGG 0.587456 8_1:-55337773 None:intergenic
TGTTGAAGCTTACCGTGATG+AGG 0.592972 8_1:+55334863 Msa1201990:CDS
GTATTGAATTTATAAACTCA+AGG 0.594021 8_1:+55339190 Msa1201990:CDS
CGAGAACATGTTTGAAACCA+CGG 0.597995 8_1:-55340246 None:intergenic
ATAAAGGTCATTGAGGGTGG+AGG 0.600689 8_1:+55337366 Msa1201990:CDS
GCCATAAAGGTCATTGAGGG+TGG 0.603042 8_1:+55337363 Msa1201990:CDS
TACAATGAACAACATTGGTG+TGG 0.607534 8_1:+55334680 Msa1201990:exon
TAGTGTCTAAGTAGTGAGGA+AGG 0.608264 8_1:-55337338 None:intergenic
AAAGATCATCAAATATAGCA+GGG 0.612978 8_1:-55337850 None:intergenic
GTCATGATTTCAGCATCTAG+TGG 0.618737 8_1:-55339023 None:intergenic
GATTGCACAATCTCTCAAAG+TGG 0.621444 8_1:-55338424 None:intergenic
AGAATAGTAGGAGCAAAGTG+GGG 0.628018 8_1:+55338150 Msa1201990:CDS
TTTGCCTTGAAATTGAGCCA+AGG 0.634603 8_1:+55339975 Msa1201990:CDS
ACTATTGAAGCAGCAACTAG+AGG 0.638003 8_1:-55338458 None:intergenic
TCAGTCTGTATGCCAATCTG+AGG 0.638610 8_1:-55340030 None:intergenic
AAAATGAGAACTACACCAAG+TGG 0.638963 8_1:-55335501 None:intergenic
GAGTTACTGCCAGAACCACT+TGG 0.646451 8_1:+55335486 Msa1201990:CDS
ATGATTTCAGCATCTAGTGG+TGG 0.655142 8_1:-55339020 None:intergenic
GCATTAGTGTCTAAGTAGTG+AGG 0.655550 8_1:-55337342 None:intergenic
ATTAAATATGACACTTCCTG+AGG 0.657142 8_1:-55339283 None:intergenic
GCTGCTTCAATAGTTCATGG+TGG 0.661244 8_1:+55338467 Msa1201990:CDS
TTTGCTGGGAAGAAAAGCAG+AGG 0.663378 8_1:-55335459 None:intergenic
AAGGCGTCTGAAAATACGGT+GGG 0.663404 8_1:-55340220 None:intergenic
AATTTGAACTTACTCCAAGG+AGG 0.664032 8_1:-55340001 None:intergenic
CCTGTTACTCTAGAGCTAGG+TGG 0.670414 8_1:+55337821 Msa1201990:CDS
ACTAGATGCTGAAATCATGA+CGG 0.689032 8_1:+55339025 Msa1201990:CDS
TGTCAAACGAGTATTTCCCA+TGG 0.692335 8_1:-55339916 None:intergenic
AAAGGCGTCTGAAAATACGG+TGG 0.717505 8_1:-55340221 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAATAATTTATATATT+TGG - chr8_1:55336438-55336457 None:intergenic 0.0%
!!! TTAAGTATTTTTTTCTTTTT+GGG - chr8_1:55335069-55335088 None:intergenic 10.0%
!!! TTTAAGTATTTTTTTCTTTT+TGG - chr8_1:55335070-55335089 None:intergenic 10.0%
!! AACAAAAAATAAAATAAAAG+GGG - chr8_1:55335240-55335259 None:intergenic 10.0%
!!! CTCATTTTTATTTATATTTT+GGG - chr8_1:55335597-55335616 None:intergenic 10.0%
!!! ACTCATTTTTATTTATATTT+TGG - chr8_1:55335598-55335617 None:intergenic 10.0%
!!! GTATTAGTAATTTTTTTTAA+GGG - chr8_1:55336232-55336251 None:intergenic 10.0%
!!! AGTATTAGTAATTTTTTTTA+AGG - chr8_1:55336233-55336252 None:intergenic 10.0%
!!! TATATACATTTTAATTTGAT+TGG + chr8_1:55337507-55337526 Msa1201990:intron 10.0%
!! TAAAAGAATAAAACTTATAA+TGG - chr8_1:55338787-55338806 None:intergenic 10.0%
!!! TATACTTTTTTTTTAGGAAA+AGG + chr8_1:55334887-55334906 Msa1201990:intron 15.0%
!!! ATACTTTTTTTTTAGGAAAA+GGG + chr8_1:55334888-55334907 Msa1201990:intron 15.0%
!!! TTTTTTCATATAACAAAAAC+AGG - chr8_1:55336365-55336384 None:intergenic 15.0%
!!! ATTGTATTTTATTTTGTTAG+GGG - chr8_1:55336806-55336825 None:intergenic 15.0%
!!! GATTGTATTTTATTTTGTTA+GGG - chr8_1:55336807-55336826 None:intergenic 15.0%
!!! AAACTATATGTCAAATTTTT+GGG - chr8_1:55338613-55338632 None:intergenic 15.0%
!! TGTATATTAGTAGAAAAATA+TGG - chr8_1:55339386-55339405 None:intergenic 15.0%
!!! AAAAACAGTGATTTTTATTA+TGG - chr8_1:55339797-55339816 None:intergenic 15.0%
!!! TGAGGTTATACTTTTTTTTT+AGG + chr8_1:55334881-55334900 Msa1201990:intron 20.0%
!!! AACTATTTTCACTGTTATTA+TGG + chr8_1:55335415-55335434 Msa1201990:intron 20.0%
!! GTTGGAAATATATAGAAAAA+TGG + chr8_1:55335790-55335809 Msa1201990:intron 20.0%
!!! TTTTTATAATAATAACCGGA+TGG + chr8_1:55336474-55336493 Msa1201990:intron 20.0%
!! CAATTCTTCTAACAAAATTA+AGG + chr8_1:55336731-55336750 Msa1201990:intron 20.0%
!!! TTGTATTTTATTTTGTTAGG+GGG - chr8_1:55336805-55336824 None:intergenic 20.0%
!!! GGATTGTATTTTATTTTGTT+AGG - chr8_1:55336808-55336827 None:intergenic 20.0%
!!! TAGTAACTTAGTAAGTTTTT+TGG + chr8_1:55338302-55338321 Msa1201990:intron 20.0%
!!! AAGTTCATGAGAAAATTTTA+TGG + chr8_1:55338353-55338372 Msa1201990:CDS 20.0%
!! AATTAATGTGTAGTGATTAT+AGG - chr8_1:55338534-55338553 None:intergenic 20.0%
!!! AGTATACTTGCATTTTTTTT+TGG + chr8_1:55338585-55338604 Msa1201990:intron 20.0%
!!! GAAACTATATGTCAAATTTT+TGG - chr8_1:55338614-55338633 None:intergenic 20.0%
!! GTATTGAATTTATAAACTCA+AGG + chr8_1:55339190-55339209 Msa1201990:CDS 20.0%
!!! ATTGATTTGCAATACATTAT+AGG + chr8_1:55340156-55340175 Msa1201990:three_prime_UTR 20.0%
!! CATCTTCATTTTCATGAATT+AGG - chr8_1:55334803-55334822 None:intergenic 25.0%
!! AAAAAAGTATAACCTCATCA+CGG - chr8_1:55334878-55334897 None:intergenic 25.0%
! TTATAATCCCATCAAAGTAA+AGG + chr8_1:55335258-55335277 Msa1201990:intron 25.0%
! TATAATCCCATCAAAGTAAA+GGG + chr8_1:55335259-55335278 Msa1201990:intron 25.0%
! TAGACAAAAGAAATTGATAC+AGG - chr8_1:55335299-55335318 None:intergenic 25.0%
! TAATTAACTGTTACATGTTC+TGG + chr8_1:55335333-55335352 Msa1201990:intron 25.0%
!!! TAGTTCTCATTTTTTCTTCT+TGG + chr8_1:55335511-55335530 Msa1201990:CDS 25.0%
!! AAATTTTGTGACTTACTGAT+TGG - chr8_1:55335543-55335562 None:intergenic 25.0%
!! AAGGAGTATAAAAAAAAGGT+GGG - chr8_1:55335571-55335590 None:intergenic 25.0%
!!! TTATTTATATTTTGGGACGA+AGG - chr8_1:55335590-55335609 None:intergenic 25.0%
!! ACCTAATTTTCACAACATTA+AGG - chr8_1:55336138-55336157 None:intergenic 25.0%
! TTAATGTTGTGAAAATTAGG+TGG + chr8_1:55336137-55336156 Msa1201990:intron 25.0%
!!! AATCACTTTAGAATATTGTG+CGG - chr8_1:55336257-55336276 None:intergenic 25.0%
! CAGAAAAAAAAAAAACAGGA+GGG - chr8_1:55336331-55336350 None:intergenic 25.0%
! TCAGAAAAAAAAAAAACAGG+AGG - chr8_1:55336332-55336351 None:intergenic 25.0%
! TGCTCAGAAAAAAAAAAAAC+AGG - chr8_1:55336335-55336354 None:intergenic 25.0%
! TTCATATAACAAAAACAGGA+GGG - chr8_1:55336361-55336380 None:intergenic 25.0%
! TTTCATATAACAAAAACAGG+AGG - chr8_1:55336362-55336381 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - chr8_1:55336655-55336674 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr8_1:55336620-55336639 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr8_1:55336655-55336674 Msa1201990:intron 25.0%
! TTATTCCTCAAGTAATAGAA+AGG - chr8_1:55337056-55337075 None:intergenic 25.0%
! CTTTGATTATTGTCAAACTT+TGG + chr8_1:55337162-55337181 Msa1201990:intron 25.0%
! CAAGTTTAGTGAAATGAATT+AGG - chr8_1:55337464-55337483 None:intergenic 25.0%
! AATTCATTTCACTAAACTTG+TGG + chr8_1:55337464-55337483 Msa1201990:intron 25.0%
! TTTGAATTAGAATTTCCTTG+CGG + chr8_1:55337552-55337571 Msa1201990:intron 25.0%
! AAAGATCATCAAATATAGCA+GGG - chr8_1:55337853-55337872 None:intergenic 25.0%
!! TTCAAATCCTTCAGATTTTA+AGG + chr8_1:55337871-55337890 Msa1201990:CDS 25.0%
!!! AGCCAAAGTTTTTTAAATCA+CGG - chr8_1:55338061-55338080 None:intergenic 25.0%
! TGTCATATTATTGAAGATCA+AGG + chr8_1:55338089-55338108 Msa1201990:intron 25.0%
!!! TAGTTTGATTTTTACCAAGA+TGG + chr8_1:55338119-55338138 Msa1201990:intron 25.0%
! AAAATAAGCCCAAAATTTAG+AGG - chr8_1:55338669-55338688 None:intergenic 25.0%
!! TTTACTTCAGTTACTTTCAT+TGG - chr8_1:55338925-55338944 None:intergenic 25.0%
!! ATTTTATTCACCTGTATAGA+TGG - chr8_1:55339162-55339181 None:intergenic 25.0%
! TATACAGGTGAATAAAATTC+AGG + chr8_1:55339164-55339183 Msa1201990:intron 25.0%
! TCAAAGTAAGATGTATCAAA+CGG - chr8_1:55339363-55339382 None:intergenic 25.0%
! TTAAGCTCAAAATTATGCAT+TGG + chr8_1:55339501-55339520 Msa1201990:intron 25.0%
! TCAACTGTATCATGTATTAT+GGG + chr8_1:55339538-55339557 Msa1201990:intron 25.0%
AATCCTACAATGAACAACAT+TGG + chr8_1:55334675-55334694 Msa1201990:exon 30.0%
!! GAAAAACAAGAAGTGTTACA+TGG + chr8_1:55334748-55334767 Msa1201990:CDS 30.0%
!! GAGTGATTACTTTTGTAGAT+TGG + chr8_1:55335116-55335135 Msa1201990:intron 30.0%
!! TGATTACTTTTGTAGATTGG+AGG + chr8_1:55335119-55335138 Msa1201990:intron 30.0%
!! GATTACTTTTGTAGATTGGA+GGG + chr8_1:55335120-55335139 Msa1201990:intron 30.0%
!! ATTACTTTTGTAGATTGGAG+GGG + chr8_1:55335121-55335140 Msa1201990:intron 30.0%
AAAATCAGCACAAAACTCTT+TGG + chr8_1:55335148-55335167 Msa1201990:CDS 30.0%
ATATAAGATCCTACCTTCTT+AGG - chr8_1:55335197-55335216 None:intergenic 30.0%
CAAAAGAAATTGATACAGGT+TGG - chr8_1:55335295-55335314 None:intergenic 30.0%
!! TTTGTCCATACTTTTGTTGT+TGG + chr8_1:55335379-55335398 Msa1201990:intron 30.0%
TAAGTCCAACAACAAAAGTA+TGG - chr8_1:55335387-55335406 None:intergenic 30.0%
! AGGAGTATAAAAAAAAGGTG+GGG - chr8_1:55335570-55335589 None:intergenic 30.0%
! GAAGGAGTATAAAAAAAAGG+TGG - chr8_1:55335572-55335591 None:intergenic 30.0%
! GACGAAGGAGTATAAAAAAA+AGG - chr8_1:55335575-55335594 None:intergenic 30.0%
! TTGTTGACTAGAATATCCTT+AGG + chr8_1:55335722-55335741 Msa1201990:intron 30.0%
!! AATATCCTTAGGCTTTGTTT+GGG + chr8_1:55335733-55335752 Msa1201990:intron 30.0%
GAACTCAAAAATTGTATTGG+GGG - chr8_1:55335967-55335986 None:intergenic 30.0%
GGAACTCAAAAATTGTATTG+GGG - chr8_1:55335968-55335987 None:intergenic 30.0%
GGGAACTCAAAAATTGTATT+GGG - chr8_1:55335969-55335988 None:intergenic 30.0%
ATAAAAAATCCCCCTCATTT+GGG - chr8_1:55335991-55336010 None:intergenic 30.0%
AATAAAAAATCCCCCTCATT+TGG - chr8_1:55335992-55336011 None:intergenic 30.0%
AGGAAGAAATAGAAGACATT+GGG - chr8_1:55336049-55336068 None:intergenic 30.0%
!! ACAACATTAAGGCTTTGTTT+GGG - chr8_1:55336127-55336146 None:intergenic 30.0%
GCCTTAATGTTGTGAAAATT+AGG + chr8_1:55336134-55336153 Msa1201990:intron 30.0%
!! ATCACTTTAGAATATTGTGC+GGG - chr8_1:55336256-55336275 None:intergenic 30.0%
! TTAAGGCTTAATAGCAGTTT+TGG + chr8_1:55336748-55336767 Msa1201990:intron 30.0%
!! AGCATTGACTTTGTCAAAAT+TGG - chr8_1:55336873-55336892 None:intergenic 30.0%
GTAAACCTTTCTATTACTTG+AGG + chr8_1:55337048-55337067 Msa1201990:intron 30.0%
AACAACTACTGCTACAAAAA+TGG + chr8_1:55337400-55337419 Msa1201990:CDS 30.0%
ACAACTACTGCTACAAAAAT+GGG + chr8_1:55337401-55337420 Msa1201990:CDS 30.0%
! TGGGACAAAATATTTTTCAC+TGG + chr8_1:55337420-55337439 Msa1201990:CDS 30.0%
TGAAATGAATTAGGCTGTTA+TGG - chr8_1:55337455-55337474 None:intergenic 30.0%
GCAAGGAAATTCTAATTCAA+AGG - chr8_1:55337553-55337572 None:intergenic 30.0%
!! AATCGTTTCCTTTTGATTGA+TGG + chr8_1:55337674-55337693 Msa1201990:intron 30.0%
! GTTCTAGATTTATCTCTACA+TGG + chr8_1:55337729-55337748 Msa1201990:intron 30.0%
GAAAGATCATCAAATATAGC+AGG - chr8_1:55337854-55337873 None:intergenic 30.0%
TGAACTACCTTAAAATCTGA+AGG - chr8_1:55337881-55337900 None:intergenic 30.0%
GACCGTGATTTAAAAAACTT+TGG + chr8_1:55338056-55338075 Msa1201990:intron 30.0%
! AATCGATTATTTGCTTGTTG+AGG + chr8_1:55338200-55338219 Msa1201990:CDS 30.0%
! ATTTTATGGTGACAACATGA+TGG + chr8_1:55338367-55338386 Msa1201990:CDS 30.0%
AAGAGACTACTATTACATAC+AGG - chr8_1:55338511-55338530 None:intergenic 30.0%
TTTCTTGAAAGTTGCATCTT+TGG - chr8_1:55339244-55339263 None:intergenic 30.0%
ATTAAATATGACACTTCCTG+AGG - chr8_1:55339286-55339305 None:intergenic 30.0%
CAAAGTAAGATGTATCAAAC+GGG - chr8_1:55339362-55339381 None:intergenic 30.0%
GTCAACTGTATCATGTATTA+TGG + chr8_1:55339537-55339556 Msa1201990:intron 30.0%
!! AATATTTTTGAGGAGTTGCA+TGG + chr8_1:55339628-55339647 Msa1201990:intron 30.0%
ACAAAGTTGAATCTATCGTA+TGG + chr8_1:55339764-55339783 Msa1201990:intron 30.0%
TTATGTGATACACTACCATT+TGG + chr8_1:55339863-55339882 Msa1201990:CDS 30.0%
!!! TATGCAATACAGCTTTTTCA+TGG - chr8_1:55339949-55339968 None:intergenic 30.0%
TCTAATTTGAACTTACTCCA+AGG - chr8_1:55340007-55340026 None:intergenic 30.0%
CAAATTAGAATTCCTCAGAT+TGG + chr8_1:55340018-55340037 Msa1201990:CDS 30.0%
ACACCAATGTTGTTCATTGT+AGG - chr8_1:55334681-55334700 None:intergenic 35.0%
TACAATGAACAACATTGGTG+TGG + chr8_1:55334680-55334699 Msa1201990:exon 35.0%
TTGAGACAGTACTTCAAAAC+AGG + chr8_1:55334726-55334745 Msa1201990:CDS 35.0%
AAAGCTCTTTACCAAGATCT+TGG + chr8_1:55334831-55334850 Msa1201990:CDS 35.0%
AAGCTCTTTACCAAGATCTT+GGG + chr8_1:55334832-55334851 Msa1201990:CDS 35.0%
CTTTGGACTGTGTTGAAAAA+TGG + chr8_1:55335165-55335184 Msa1201990:CDS 35.0%
AAAATGAGAACTACACCAAG+TGG - chr8_1:55335504-55335523 None:intergenic 35.0%
GTATAAAAAAAAGGTGGGGT+AGG - chr8_1:55335566-55335585 None:intergenic 35.0%
!! GAATATCCTTAGGCTTTGTT+TGG + chr8_1:55335732-55335751 Msa1201990:intron 35.0%
TCAAAAATTGTATTGGGGGA+GGG - chr8_1:55335963-55335982 None:intergenic 35.0%
GGGGAACTCAAAAATTGTAT+TGG - chr8_1:55335970-55335989 None:intergenic 35.0%
TAAAAAATCCCCCTCATTTG+GGG - chr8_1:55335990-55336009 None:intergenic 35.0%
AAGAAATAGAAGACATTGGG+AGG - chr8_1:55336046-55336065 None:intergenic 35.0%
GAGGAAGAAATAGAAGACAT+TGG - chr8_1:55336050-55336069 None:intergenic 35.0%
!! CACAACATTAAGGCTTTGTT+TGG - chr8_1:55336128-55336147 None:intergenic 35.0%
GTGGTAAGACTAATTAATGC+AGG + chr8_1:55336156-55336175 Msa1201990:intron 35.0%
CTTTGGTATATTACTCCATC+CGG - chr8_1:55336492-55336511 None:intergenic 35.0%
GATGGAGTAATATACCAAAG+AGG + chr8_1:55336492-55336511 Msa1201990:intron 35.0%
ACTTTGTCAAAATTGGACTG+GGG - chr8_1:55336866-55336885 None:intergenic 35.0%
GACTTTGTCAAAATTGGACT+GGG - chr8_1:55336867-55336886 None:intergenic 35.0%
TGACTTTGTCAAAATTGGAC+TGG - chr8_1:55336868-55336887 None:intergenic 35.0%
!!! CACGTGCGTAATTTTTTTAG+AGG + chr8_1:55336904-55336923 Msa1201990:intron 35.0%
TTTAATCTAACAGCAAGACG+AGG + chr8_1:55337118-55337137 Msa1201990:intron 35.0%
ACATTTACACTATGCAGTGT+TGG + chr8_1:55337218-55337237 Msa1201990:intron 35.0%
! TTGGCATTGGATCCAATAAT+TGG + chr8_1:55337237-55337256 Msa1201990:CDS 35.0%
! TGGCATTGGATCCAATAATT+GGG + chr8_1:55337238-55337257 Msa1201990:CDS 35.0%
TAAGTAGTGAGGAAGGATAT+TGG - chr8_1:55337334-55337353 None:intergenic 35.0%
CTTAGACACTAATGCCATAA+AGG + chr8_1:55337350-55337369 Msa1201990:CDS 35.0%
TAATGCCATAAAGGTCATTG+AGG + chr8_1:55337359-55337378 Msa1201990:CDS 35.0%
AATGCCATAAAGGTCATTGA+GGG + chr8_1:55337360-55337379 Msa1201990:CDS 35.0%
CGAAGAAACCATCAATCAAA+AGG - chr8_1:55337685-55337704 None:intergenic 35.0%
! ACATGGTGTATGACATTTTC+AGG + chr8_1:55337746-55337765 Msa1201990:intron 35.0%
! TATTCTTTTCACTGCCATCT+TGG - chr8_1:55338136-55338155 None:intergenic 35.0%
ATGGCAGTGAAAAGAATAGT+AGG + chr8_1:55338138-55338157 Msa1201990:CDS 35.0%
AAAGAATAGTAGGAGCAAAG+TGG + chr8_1:55338148-55338167 Msa1201990:CDS 35.0%
AAGAATAGTAGGAGCAAAGT+GGG + chr8_1:55338149-55338168 Msa1201990:CDS 35.0%
!!! GCTGCTATTTTTTTCTTCTG+AGG + chr8_1:55338265-55338284 Msa1201990:intron 35.0%
! AAATCCACGCCTCTAAATTT+TGG + chr8_1:55338657-55338676 Msa1201990:intron 35.0%
! AATCCACGCCTCTAAATTTT+GGG + chr8_1:55338658-55338677 Msa1201990:intron 35.0%
CAGTTTCTTACAACTTTGTC+AGG + chr8_1:55338970-55338989 Msa1201990:intron 35.0%
GGTGGATCTAACAATATTGT+AGG - chr8_1:55339005-55339024 None:intergenic 35.0%
ACTAGATGCTGAAATCATGA+CGG + chr8_1:55339025-55339044 Msa1201990:CDS 35.0%
! ATCATGACGGAAGAAATCTT+TGG + chr8_1:55339038-55339057 Msa1201990:CDS 35.0%
!! ACTTAACTTGCCATCTATAC+AGG + chr8_1:55339149-55339168 Msa1201990:intron 35.0%
! GCATAAATTGCAAGAGGTTT+TGG - chr8_1:55339216-55339235 None:intergenic 35.0%
GTGAATGCATAAATTGCAAG+AGG - chr8_1:55339222-55339241 None:intergenic 35.0%
ATTGTATCAGAAACTTCCTC+AGG + chr8_1:55339267-55339286 Msa1201990:CDS 35.0%
! TGTATCAAACGGGTTCAAAA+TGG - chr8_1:55339352-55339371 None:intergenic 35.0%
CTGTATCATGTATTATGGGA+CGG + chr8_1:55339542-55339561 Msa1201990:intron 35.0%
AATTTGAACTTACTCCAAGG+AGG - chr8_1:55340004-55340023 None:intergenic 35.0%
GCATACAGACTGAATTACTT+TGG + chr8_1:55340040-55340059 Msa1201990:CDS 35.0%
!! CATATGGTGCTACATATGTT+AGG + chr8_1:55340073-55340092 Msa1201990:CDS 35.0%
!! ATAGAGAAGCATTGTAGTTG+AGG - chr8_1:55340125-55340144 None:intergenic 35.0%
GGACTGTGTTGAAAAATGGA+TGG + chr8_1:55335169-55335188 Msa1201990:CDS 40.0%
AAAATGGATGGCTCCTAAGA+AGG + chr8_1:55335181-55335200 Msa1201990:CDS 40.0%
TCCCATCAAAGTAAAGGGAT+TGG + chr8_1:55335264-55335283 Msa1201990:intron 40.0%
CCCAATCCCTTTACTTTGAT+GGG - chr8_1:55335268-55335287 None:intergenic 40.0%
CCCATCAAAGTAAAGGGATT+GGG + chr8_1:55335265-55335284 Msa1201990:intron 40.0%
ACCCAATCCCTTTACTTTGA+TGG - chr8_1:55335269-55335288 None:intergenic 40.0%
AAACTCCCAAACAAAGCCTA+AGG - chr8_1:55335741-55335760 None:intergenic 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr8_1:55335740-55335759 Msa1201990:intron 40.0%
CTCAAAAATTGTATTGGGGG+AGG - chr8_1:55335964-55335983 None:intergenic 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG + chr8_1:55335976-55335995 Msa1201990:intron 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG + chr8_1:55335977-55335996 Msa1201990:intron 40.0%
AAAAAATCCCCCTCATTTGG+GGG - chr8_1:55335989-55336008 None:intergenic 40.0%
GGAAAAAAGGAAGGAACAAG+AGG - chr8_1:55336069-55336088 None:intergenic 40.0%
!!! GAGGGTTTTGGAAAAAAGGA+AGG - chr8_1:55336078-55336097 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - chr8_1:55336120-55336139 None:intergenic 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr8_1:55336659-55336678 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr8_1:55336658-55336677 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr8_1:55336658-55336677 Msa1201990:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr8_1:55336659-55336678 Msa1201990:intron 40.0%
TGAAGAATTCTGCAGCATAG+TGG - chr8_1:55336699-55336718 None:intergenic 40.0%
TCGCAACTTCCTGATACTTA+GGG - chr8_1:55336776-55336795 None:intergenic 40.0%
ATCGCAACTTCCTGATACTT+AGG - chr8_1:55336777-55336796 None:intergenic 40.0%
! GTATCAGGAAGTTGCGATTT+TGG + chr8_1:55336779-55336798 Msa1201990:intron 40.0%
! CTTTGTCAAAATTGGACTGG+GGG - chr8_1:55336865-55336884 None:intergenic 40.0%
! GGCATTGGATCCAATAATTG+GGG + chr8_1:55337239-55337258 Msa1201990:CDS 40.0%
TAGTGTCTAAGTAGTGAGGA+AGG - chr8_1:55337341-55337360 None:intergenic 40.0%
GCATTAGTGTCTAAGTAGTG+AGG - chr8_1:55337345-55337364 None:intergenic 40.0%
GCACATAAGTCCAATGTTAC+CGG - chr8_1:55337611-55337630 None:intergenic 40.0%
GTTGTTTGTGACCACAATTG+TGG + chr8_1:55337930-55337949 Msa1201990:intron 40.0%
TGTTGTCTCTGCTACAATTG+TGG + chr8_1:55337971-55337990 Msa1201990:intron 40.0%
AGAATAGTAGGAGCAAAGTG+GGG + chr8_1:55338150-55338169 Msa1201990:CDS 40.0%
!! TGTAGTGGACAAGCATGTAT+AGG + chr8_1:55338177-55338196 Msa1201990:CDS 40.0%
!! GGAGAAGTACTCATCTGAAT+TGG + chr8_1:55338221-55338240 Msa1201990:CDS 40.0%
GATTGCACAATCTCTCAAAG+TGG - chr8_1:55338427-55338446 None:intergenic 40.0%
CTATTGAAGCAGCAACTAGA+GGG - chr8_1:55338460-55338479 None:intergenic 40.0%
ACTATTGAAGCAGCAACTAG+AGG - chr8_1:55338461-55338480 None:intergenic 40.0%
! GTTGCTGCTTCAATAGTTCA+TGG + chr8_1:55338464-55338483 Msa1201990:CDS 40.0%
ATGATTTCAGCATCTAGTGG+TGG - chr8_1:55339023-55339042 None:intergenic 40.0%
GTCATGATTTCAGCATCTAG+TGG - chr8_1:55339026-55339045 None:intergenic 40.0%
TATCATGTATTATGGGACGG+AGG + chr8_1:55339545-55339564 Msa1201990:intron 40.0%
ATCATGTATTATGGGACGGA+GGG + chr8_1:55339546-55339565 Msa1201990:intron 40.0%
TAAAGGATGGGAACTGGTTA+AGG + chr8_1:55339573-55339592 Msa1201990:intron 40.0%
AGAAATGCTAATTGATGCCC+CGG - chr8_1:55339700-55339719 None:intergenic 40.0%
TGTGATACACTACCATTTGG+AGG + chr8_1:55339866-55339885 Msa1201990:CDS 40.0%
TGTCAAACGAGTATTTCCCA+TGG - chr8_1:55339919-55339938 None:intergenic 40.0%
TTGGCTCAATTTCAAGGCAA+AGG - chr8_1:55339976-55339995 None:intergenic 40.0%
TTTGCCTTGAAATTGAGCCA+AGG + chr8_1:55339975-55339994 Msa1201990:CDS 40.0%
GATACCTTGGCTCAATTTCA+AGG - chr8_1:55339982-55340001 None:intergenic 40.0%
!! CTTTGGACTAGTGCTACATA+TGG + chr8_1:55340057-55340076 Msa1201990:CDS 40.0%
!! GTGAAAGGCGTCTGAAAATA+CGG - chr8_1:55340227-55340246 None:intergenic 40.0%
! ATGTTTGAAACCACGGTGAA+AGG - chr8_1:55340242-55340261 None:intergenic 40.0%
! CGAGAACATGTTTGAAACCA+CGG - chr8_1:55340249-55340268 None:intergenic 40.0%
!! GGTTAAGTAGAGCTTTGAGC+TGG - chr8_1:55334782-55334801 None:intergenic 45.0%
TCATCACGGTAAGCTTCAAC+AGG - chr8_1:55334864-55334883 None:intergenic 45.0%
TGTTGAAGCTTACCGTGATG+AGG + chr8_1:55334863-55334882 Msa1201990:CDS 45.0%
TTTGCTGGGAAGAAAAGCAG+AGG - chr8_1:55335462-55335481 None:intergenic 45.0%
!! CTGCTTTTCTTCCCAGCAAA+AGG + chr8_1:55335462-55335481 Msa1201990:CDS 45.0%
! GCAGTAACTCTCCTTTTGCT+GGG - chr8_1:55335476-55335495 None:intergenic 45.0%
AGAACTACACCAAGTGGTTC+TGG - chr8_1:55335498-55335517 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr8_1:55335744-55335763 Msa1201990:intron 45.0%
TTTGGGAGTTTGGAGGGAAA+GGG + chr8_1:55335750-55335769 Msa1201990:intron 45.0%
! TTGTATTGGGGGAGGGTTTT+GGG - chr8_1:55335956-55335975 None:intergenic 45.0%
! ATTGTATTGGGGGAGGGTTT+TGG - chr8_1:55335957-55335976 None:intergenic 45.0%
! TTTGAGTTCCCCCAAATGAG+GGG + chr8_1:55335978-55335997 Msa1201990:intron 45.0%
TAGAAGACATTGGGAGGAGA+GGG - chr8_1:55336040-55336059 None:intergenic 45.0%
ATAGAAGACATTGGGAGGAG+AGG - chr8_1:55336041-55336060 None:intergenic 45.0%
!!! AGGGGAGGGTTTTGGAAAAA+AGG - chr8_1:55336082-55336101 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr8_1:55335745-55335764 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr8_1:55335744-55335763 None:intergenic 45.0%
TTGTCTCGCATTGTCCTCTT+TGG - chr8_1:55336509-55336528 None:intergenic 45.0%
AGAATTCTGCAGCATAGTGG+CGG - chr8_1:55336696-55336715 None:intergenic 45.0%
GCAACTTCCTGATACTTAGG+GGG - chr8_1:55336774-55336793 None:intergenic 45.0%
CGCAACTTCCTGATACTTAG+GGG - chr8_1:55336775-55336794 None:intergenic 45.0%
CAAAAGGGGCAGTACTTAAG+GGG - chr8_1:55336833-55336852 None:intergenic 45.0%
GCAAAAGGGGCAGTACTTAA+GGG - chr8_1:55336834-55336853 None:intergenic 45.0%
TGCAAAAGGGGCAGTACTTA+AGG - chr8_1:55336835-55336854 None:intergenic 45.0%
! TACTGCCCCTTTTGCAGTTT+TGG + chr8_1:55336839-55336858 Msa1201990:intron 45.0%
TGACAAAGTCAATGCTGACG+TGG + chr8_1:55336877-55336896 Msa1201990:intron 45.0%
!! ACACTATGCAGTGTTGGCAT+TGG + chr8_1:55337224-55337243 Msa1201990:intron 45.0%
GCAGATACTGCCCCAATTAT+TGG - chr8_1:55337252-55337271 None:intergenic 45.0%
ATAATTGGGGCAGTATCTGC+TGG + chr8_1:55337252-55337271 Msa1201990:CDS 45.0%
! GCAAGAAATGAAGAGCATGC+TGG - chr8_1:55337312-55337331 None:intergenic 45.0%
TCCACCCTCAATGACCTTTA+TGG - chr8_1:55337367-55337386 None:intergenic 45.0%
ATAAAGGTCATTGAGGGTGG+AGG + chr8_1:55337366-55337385 Msa1201990:CDS 45.0%
CATTCATGCAGTAAGCATGC+CGG + chr8_1:55337589-55337608 Msa1201990:intron 45.0%
AGTAAGCATGCCGGTAACAT+TGG + chr8_1:55337598-55337617 Msa1201990:intron 45.0%
!! ATTTTCAGGAAGTCCACGTG+TGG + chr8_1:55337760-55337779 Msa1201990:intron 45.0%
!! ACTCCTGTTACTCTAGAGCT+AGG + chr8_1:55337818-55337837 Msa1201990:CDS 45.0%
CTGCTACAATTGTGGTCACA+TGG + chr8_1:55337979-55337998 Msa1201990:intron 45.0%
GCTGCTTCAATAGTTCATGG+TGG + chr8_1:55338467-55338486 Msa1201990:CDS 45.0%
AAGCCCAAAATTTAGAGGCG+TGG - chr8_1:55338664-55338683 None:intergenic 45.0%
ACAGTGATCACTGGAAGTAG+TGG - chr8_1:55339065-55339084 None:intergenic 45.0%
CTGATACTCACAGTGATCAC+TGG - chr8_1:55339074-55339093 None:intergenic 45.0%
! ACGGAGGGAGTATAAAGGAT+GGG + chr8_1:55339561-55339580 Msa1201990:intron 45.0%
GGAGTATAAAGGATGGGAAC+TGG + chr8_1:55339567-55339586 Msa1201990:intron 45.0%
! ACACTACCATTTGGAGGTGT+TGG + chr8_1:55339872-55339891 Msa1201990:CDS 45.0%
!! GTGTTGGTCAGAGTGGTTTT+GGG + chr8_1:55339888-55339907 Msa1201990:CDS 45.0%
TTACTCCAAGGAGGATACCT+TGG - chr8_1:55339995-55340014 None:intergenic 45.0%
TCAGTCTGTATGCCAATCTG+AGG - chr8_1:55340033-55340052 None:intergenic 45.0%
! AAGGCGTCTGAAAATACGGT+GGG - chr8_1:55340223-55340242 None:intergenic 45.0%
!! AAAGGCGTCTGAAAATACGG+TGG - chr8_1:55340224-55340243 None:intergenic 45.0%
!! AAAATATAATAAAAAGAAAA+AGG - chr8_1:55335032-55335051 None:intergenic 5.0%
!! TAACAAAAAATAAAATAAAA+GGG - chr8_1:55335241-55335260 None:intergenic 5.0%
!! ATAACAAAAAATAAAATAAA+AGG - chr8_1:55335242-55335261 None:intergenic 5.0%
!!! AATTTTTTTATAATAATAAC+CGG + chr8_1:55336470-55336489 Msa1201990:intron 5.0%
CAGGATGCTTCCCAAGATCT+TGG - chr8_1:55334845-55334864 None:intergenic 50.0%
TGGATGGCTCCTAAGAAGGT+AGG + chr8_1:55335185-55335204 Msa1201990:intron 50.0%
! GGCAGTAACTCTCCTTTTGC+TGG - chr8_1:55335477-55335496 None:intergenic 50.0%
GAGTTACTGCCAGAACCACT+TGG + chr8_1:55335486-55335505 Msa1201990:CDS 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr8_1:55335743-55335762 Msa1201990:intron 50.0%
GTTTGGGAGTTTGGAGGGAA+AGG + chr8_1:55335749-55335768 Msa1201990:intron 50.0%
! TGTATTGGGGGAGGGTTTTG+GGG - chr8_1:55335955-55335974 None:intergenic 50.0%
TTGAGTTCCCCCAAATGAGG+GGG + chr8_1:55335979-55335998 Msa1201990:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr8_1:55335743-55335762 None:intergenic 50.0%
GACAAAGTGAGTACACCCTC+CGG + chr8_1:55336524-55336543 Msa1201990:intron 50.0%
!! GTTTTGGCCCCCTAAGTATC+AGG + chr8_1:55336764-55336783 Msa1201990:intron 50.0%
TGGGGGCCAAAACTGCAAAA+GGG - chr8_1:55336848-55336867 None:intergenic 50.0%
GCCATAAAGGTCATTGAGGG+TGG + chr8_1:55337363-55337382 Msa1201990:CDS 50.0%
ATGACTATGCTTGCCACACG+TGG - chr8_1:55337776-55337795 None:intergenic 50.0%
!! CCACCTAGCTCTAGAGTAAC+AGG - chr8_1:55337824-55337843 None:intergenic 50.0%
!! CCTGTTACTCTAGAGCTAGG+TGG + chr8_1:55337821-55337840 Msa1201990:CDS 50.0%
TGACGTCGTGACCACAATTG+TGG - chr8_1:55337944-55337963 None:intergenic 50.0%
! ATGGGACGGAGGGAGTATAA+AGG + chr8_1:55339556-55339575 Msa1201990:intron 50.0%
! GACGGAGGGAGTATAAAGGA+TGG + chr8_1:55339560-55339579 Msa1201990:intron 50.0%
TTGCTTCCTTAACCCGTGTC+CGG + chr8_1:55339678-55339697 Msa1201990:intron 50.0%
CTCTGACCAACACCTCCAAA+TGG - chr8_1:55339881-55339900 None:intergenic 50.0%
!! TTTGGAGGTGTTGGTCAGAG+TGG + chr8_1:55339881-55339900 Msa1201990:CDS 50.0%
!!! GGTGTTGGTCAGAGTGGTTT+TGG + chr8_1:55339887-55339906 Msa1201990:CDS 50.0%
!!! TTGGTCAGAGTGGTTTTGGG+AGG + chr8_1:55339891-55339910 Msa1201990:CDS 50.0%
!!! AGTGGTTTTGGGAGGTACCA+TGG + chr8_1:55339899-55339918 Msa1201990:CDS 50.0%
!!! GTGGTTTTGGGAGGTACCAT+GGG + chr8_1:55339900-55339919 Msa1201990:CDS 50.0%
! TTGAGCCAAGGTATCCTCCT+TGG + chr8_1:55339987-55340006 Msa1201990:CDS 50.0%
! TTTTCAGACGCCTTTCACCG+TGG + chr8_1:55340229-55340248 Msa1201990:three_prime_UTR 50.0%
GGAGTTTGGAGGGAAAGGGA+GGG + chr8_1:55335754-55335773 Msa1201990:intron 55.0%
GAGTTTGGAGGGAAAGGGAG+GGG + chr8_1:55335755-55335774 Msa1201990:intron 55.0%
!!! GGGTTTTGGGGGGTTATGGA+GGG - chr8_1:55335943-55335962 None:intergenic 55.0%
!!! AGGGTTTTGGGGGGTTATGG+AGG - chr8_1:55335944-55335963 None:intergenic 55.0%
!!! TATTGGGGGAGGGTTTTGGG+GGG - chr8_1:55335953-55335972 None:intergenic 55.0%
!! GTATTGGGGGAGGGTTTTGG+GGG - chr8_1:55335954-55335973 None:intergenic 55.0%
ACATTGGGAGGAGAGGGCTT+TGG - chr8_1:55336034-55336053 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - chr8_1:55336110-55336129 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - chr8_1:55336111-55336130 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - chr8_1:55336112-55336131 None:intergenic 55.0%
GCGGTAACAAGTACACCCTC+CGG - chr8_1:55336677-55336696 None:intergenic 55.0%
GGGGGCCAAAACTGCAAAAG+GGG - chr8_1:55336847-55336866 None:intergenic 55.0%
CTGGGGGCCAAAACTGCAAA+AGG - chr8_1:55336849-55336868 None:intergenic 55.0%
! CATGCTGGAGCTTGCTCTGA+TGG - chr8_1:55337297-55337316 None:intergenic 55.0%
GCAAAGTGGGGAGTCTGTAG+TGG + chr8_1:55338162-55338181 Msa1201990:CDS 55.0%
TGCTTCCTTAACCCGTGTCC+GGG + chr8_1:55339679-55339698 Msa1201990:intron 55.0%
CTAATTGATGCCCCGGACAC+GGG - chr8_1:55339693-55339712 None:intergenic 55.0%
GCTAATTGATGCCCCGGACA+CGG - chr8_1:55339694-55339713 None:intergenic 55.0%
GGGAGTTTGGAGGGAAAGGG+AGG + chr8_1:55335753-55335772 Msa1201990:intron 60.0%
TTTGGAGGGAAAGGGAGGGG+AGG + chr8_1:55335758-55335777 Msa1201990:intron 60.0%
TTGGAGGGAAAGGGAGGGGA+GGG + chr8_1:55335759-55335778 Msa1201990:intron 60.0%
GAAAGGGAGGGGAGGGCTTT+GGG + chr8_1:55335766-55335785 Msa1201990:intron 60.0%
AAAGGGAGGGGAGGGCTTTG+GGG + chr8_1:55335767-55335786 Msa1201990:intron 60.0%
!!! GGGAGGGTTTTGGGGGGTTA+TGG - chr8_1:55335947-55335966 None:intergenic 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG - chr8_1:55336031-55336050 None:intergenic 60.0%
AGGGGCAGTACTTAAGGGGC+TGG - chr8_1:55336829-55336848 None:intergenic 60.0%
GCTTCCTTAACCCGTGTCCG+GGG + chr8_1:55339680-55339699 Msa1201990:intron 60.0%
GGAAAGGGAGGGGAGGGCTT+TGG + chr8_1:55335765-55335784 Msa1201990:intron 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG + chr8_1:55335768-55335787 Msa1201990:intron 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG - chr8_1:55336105-55336124 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG - chr8_1:55336106-55336125 None:intergenic 65.0%
GCGCGAGATTGCTGACCGCA+AGG - chr8_1:55337570-55337589 None:intergenic 65.0%
! GATGCCCCGGACACGGGTTA+AGG - chr8_1:55339687-55339706 None:intergenic 65.0%
!! GAGGGGAGGGCTTTGGGGGT+TGG + chr8_1:55335772-55335791 Msa1201990:intron 70.0%
! GGGAGGGGAGGGGAGGGTTT+TGG - chr8_1:55336090-55336109 None:intergenic 70.0%
TTGGAGGGGAGGGGAGGGGA+GGG - chr8_1:55336101-55336120 None:intergenic 70.0%
TTTGGAGGGGAGGGGAGGGG+AGG - chr8_1:55336102-55336121 None:intergenic 70.0%
GGGAGTTTGGAGGGGAGGGG+AGG - chr8_1:55336107-55336126 None:intergenic 70.0%
TGGAGGGGAGGGGAGGGGAG+GGG - chr8_1:55336100-55336119 None:intergenic 75.0%
! GGGGAGGGGAGGGGAGGGGA+GGG - chr8_1:55336096-55336115 None:intergenic 80.0%
! AGGGGAGGGGAGGGGAGGGG+AGG - chr8_1:55336097-55336116 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 55334626 55340347 55334626 ID=Msa1201990;Name=Msa1201990
chr8_1 mRNA 55334626 55340347 55334626 ID=Msa1201990-mRNA-1;Parent=Msa1201990;Name=Msa1201990-mRNA-1;_AED=0.14;_eAED=0.14;_QI=58|1|1|1|1|1|10|233|490
chr8_1 exon 55334626 55334884 55334626 ID=Msa1201990-mRNA-1:exon:17902;Parent=Msa1201990-mRNA-1
chr8_1 exon 55335134 55335202 55335134 ID=Msa1201990-mRNA-1:exon:17903;Parent=Msa1201990-mRNA-1
chr8_1 exon 55335450 55335546 55335450 ID=Msa1201990-mRNA-1:exon:17904;Parent=Msa1201990-mRNA-1
chr8_1 exon 55337235 55337441 55337235 ID=Msa1201990-mRNA-1:exon:17905;Parent=Msa1201990-mRNA-1
chr8_1 exon 55337768 55337892 55337768 ID=Msa1201990-mRNA-1:exon:17906;Parent=Msa1201990-mRNA-1
chr8_1 exon 55338138 55338242 55338138 ID=Msa1201990-mRNA-1:exon:17907;Parent=Msa1201990-mRNA-1
chr8_1 exon 55338338 55338510 55338338 ID=Msa1201990-mRNA-1:exon:17908;Parent=Msa1201990-mRNA-1
chr8_1 exon 55338992 55339082 55338992 ID=Msa1201990-mRNA-1:exon:17909;Parent=Msa1201990-mRNA-1
chr8_1 exon 55339171 55339320 55339171 ID=Msa1201990-mRNA-1:exon:17910;Parent=Msa1201990-mRNA-1
chr8_1 exon 55339860 55340347 55339860 ID=Msa1201990-mRNA-1:exon:17911;Parent=Msa1201990-mRNA-1
chr8_1 five_prime_UTR 55334626 55334683 55334626 ID=Msa1201990-mRNA-1:five_prime_utr;Parent=Msa1201990-mRNA-1
chr8_1 CDS 55334684 55334884 55334684 ID=Msa1201990-mRNA-1:cds;Parent=Msa1201990-mRNA-1
chr8_1 CDS 55335134 55335202 55335134 ID=Msa1201990-mRNA-1:cds;Parent=Msa1201990-mRNA-1
chr8_1 CDS 55335450 55335546 55335450 ID=Msa1201990-mRNA-1:cds;Parent=Msa1201990-mRNA-1
chr8_1 CDS 55337235 55337441 55337235 ID=Msa1201990-mRNA-1:cds;Parent=Msa1201990-mRNA-1
chr8_1 CDS 55337768 55337892 55337768 ID=Msa1201990-mRNA-1:cds;Parent=Msa1201990-mRNA-1
chr8_1 CDS 55338138 55338242 55338138 ID=Msa1201990-mRNA-1:cds;Parent=Msa1201990-mRNA-1
chr8_1 CDS 55338338 55338510 55338338 ID=Msa1201990-mRNA-1:cds;Parent=Msa1201990-mRNA-1
chr8_1 CDS 55338992 55339082 55338992 ID=Msa1201990-mRNA-1:cds;Parent=Msa1201990-mRNA-1
chr8_1 CDS 55339171 55339320 55339171 ID=Msa1201990-mRNA-1:cds;Parent=Msa1201990-mRNA-1
chr8_1 CDS 55339860 55340114 55339860 ID=Msa1201990-mRNA-1:cds;Parent=Msa1201990-mRNA-1
chr8_1 three_prime_UTR 55340115 55340347 55340115 ID=Msa1201990-mRNA-1:three_prime_utr;Parent=Msa1201990-mRNA-1
Gene Sequence

>Msa1201990

ATGAACAACATTGGTGTGGAAGTAGAAGAAACTGTAAGAGATTTGAGACAGTACTTCAAAACAGGAAAAACAAGAAGTGTTACATGGAGAAAAAACCAGCTCAAAGCTCTACTTAACCTAATTCATGAAAATGAAGATGCTATATCTAAAGCTCTTTACCAAGATCTTGGGAAGCATCCTGTTGAAGCTTACCGTGATGAGATTGGAGGGGTAGAAAAATCAGCACAAAACTCTTTGGACTGTGTTGAAAAATGGATGGCTCCTAAGAAGAGCAATATTCCTCTGCTTTTCTTCCCAGCAAAAGGAGAGTTACTGCCAGAACCACTTGGTGTAGTTCTCATTTTTTCTTCTTGGAACTTTCCAATCATGTTGGCATTGGATCCAATAATTGGGGCAGTATCTGCTGGAAATGTTGTAGTTATAAAACCATCAGAGCAAGCTCCAGCATGCTCTTCATTTCTTGCCAATATCCTTCCTCACTACTTAGACACTAATGCCATAAAGGTCATTGAGGGTGGAGGAGATGTCTGTGAACAACTACTGCTACAAAAATGGGACAAAATATTTTTCACTGGAAGTCCACGTGTGGCAAGCATAGTCATGTCTTCTGCTGCAAGAAATTTAACTCCTGTTACTCTAGAGCTAGGTGGAAAATGCCCTGCTATATTTGATGATCTTTCAAATCCTTCAGATTTTAAGATGGCAGTGAAAAGAATAGTAGGAGCAAAGTGGGGAGTCTGTAGTGGACAAGCATGTATAGGAATCGATTATTTGCTTGTTGAGGAGAAGTACTCATCTGAATTGATAGAACTATTAAAGAAGTTCATGAGAAAATTTTATGGTGACAACATGATGGAGTCAAAGACACTCTCAAGAATAATAAATAAGAACCACTTTGAGAGATTGTGCAATCTTCTTAAAGACCCTCTAGTTGCTGCTTCAATAGTTCATGGTGGTTCAGTTGATGAAACAAACCTGTTTATTGAGCCTACAATATTGTTAGATCCACCACTAGATGCTGAAATCATGACGGAAGAAATCTTTGGTCCACTACTTCCAGTGATCACTGTGAATAAAATTCAGGAAAGTATTGAATTTATAAACTCAAGGCCAAAACCTCTTGCAATTTATGCATTCACCAAAGATGCAACTTTCAAGAAAAAGATTGTATCAGAAACTTCCTCAGGAAGTGTCATATTTAATGACACACTAGTTCAATTTTTATGTGATACACTACCATTTGGAGGTGTTGGTCAGAGTGGTTTTGGGAGGTACCATGGGAAATACTCGTTTGACACATTCAGCCATGAAAAAGCTGTATTGCATAGACACCTTTGCCTTGAAATTGAGCCAAGGTATCCTCCTTGGAGTAAGTTCAAATTAGAATTCCTCAGATTGGCATACAGACTGAATTACTTTGGACTAGTGCTACATATGGTGCTACATATGTTAGGATTGAAAAAAAACAACTAG

Protein sequence

>Msa1201990

MNNIGVEVEETVRDLRQYFKTGKTRSVTWRKNQLKALLNLIHENEDAISKALYQDLGKHPVEAYRDEIGGVEKSAQNSLDCVEKWMAPKKSNIPLLFFPAKGELLPEPLGVVLIFSSWNFPIMLALDPIIGAVSAGNVVVIKPSEQAPACSSFLANILPHYLDTNAIKVIEGGGDVCEQLLLQKWDKIFFTGSPRVASIVMSSAARNLTPVTLELGGKCPAIFDDLSNPSDFKMAVKRIVGAKWGVCSGQACIGIDYLLVEEKYSSELIELLKKFMRKFYGDNMMESKTLSRIINKNHFERLCNLLKDPLVAASIVHGGSVDETNLFIEPTILLDPPLDAEIMTEEIFGPLLPVITVNKIQESIEFINSRPKPLAIYAFTKDATFKKKIVSETSSGSVIFNDTLVQFLCDTLPFGGVGQSGFGRYHGKYSFDTFSHEKAVLHRHLCLEIEPRYPPWSKFKLEFLRLAYRLNYFGLVLHMVLHMLGLKKNN*