AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0079770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079770 MtrunA17_Chr1g0191301 99.710 345 1 0 1 345 1 345 0.0 711
Msa0079770 MtrunA17_Chr1g0196311 72.174 345 94 2 1 344 17 360 0.0 528
Msa0079770 MtrunA17_Chr7g0259161 70.655 351 95 6 1 344 1 350 0.0 511
Msa0079770 MtrunA17_Chr6g0477251 40.413 339 195 2 6 341 554 888 2.24e-79 259
Msa0079770 MtrunA17_Chr6g0477251 38.757 338 200 2 7 341 1 334 2.03e-73 243
Msa0079770 MtrunA17_Chr6g0477161 39.053 338 198 3 8 341 351 684 2.61e-76 248
Msa0079770 MtrunA17_Chr6g0477161 39.763 337 196 2 9 342 4 336 2.99e-76 248
Msa0079770 MtrunA17_Chr6g0477231 35.522 335 213 1 10 341 2 336 5.30e-75 234
Msa0079770 MtrunA17_Chr6g0477271 38.065 310 176 4 36 340 53 351 7.37e-66 212
Msa0079770 MtrunA17_Chr6g0477241 30.321 343 182 5 5 341 7 298 1.34e-48 165
Msa0079770 MtrunA17_Chr4g0025291 35.417 288 157 6 67 340 43 315 2.15e-46 160
Msa0079770 MtrunA17_Chr7g0214851 32.468 308 170 7 61 341 54 350 2.43e-42 150
Msa0079770 MtrunA17_Chr1g0210121 31.310 313 175 8 53 343 51 345 9.70e-39 140
Msa0079770 MtrunA17_Chr7g0268091 30.690 290 167 7 67 342 45 314 2.07e-37 136
Msa0079770 MtrunA17_Chr8g0351211 29.878 328 190 9 38 345 14 321 4.55e-37 135
Msa0079770 MtrunA17_Chr3g0133701 29.373 303 169 7 53 344 32 300 1.35e-36 134
Msa0079770 MtrunA17_Chr1g0204211 33.223 301 175 9 32 322 37 321 9.59e-36 132
Msa0079770 MtrunA17_Chr1g0149271 32.117 274 161 6 38 305 16 270 1.76e-35 131
Msa0079770 MtrunA17_Chr8g0351201 30.887 327 180 10 37 342 25 326 1.99e-35 131
Msa0079770 MtrunA17_Chr7g0235741 31.046 306 182 8 53 345 65 354 9.26e-35 130
Msa0079770 MtrunA17_Chr6g0474541 33.884 242 134 7 32 264 47 271 1.90e-34 129
Msa0079770 MtrunA17_Chr6g0474411 30.065 306 177 9 32 320 22 307 6.46e-34 127
Msa0079770 MtrunA17_Chr1g0204201 32.624 282 162 8 38 305 24 291 1.52e-33 126
Msa0079770 MtrunA17_Chr8g0351171 31.613 310 178 10 25 321 8 296 2.41e-33 125
Msa0079770 MtrunA17_Chr4g0045181 30.132 302 182 8 53 341 33 318 1.34e-32 124
Msa0079770 MtrunA17_Chr3g0081521 32.627 236 148 3 97 322 80 314 1.70e-32 124
Msa0079770 MtrunA17_Chr6g0474471 30.363 303 185 9 31 319 15 305 4.48e-32 122
Msa0079770 MtrunA17_Chr6g0474631 33.032 221 126 5 53 264 38 245 1.00e-31 121
Msa0079770 MtrunA17_Chr6g0458881 31.660 259 136 4 105 323 160 417 1.37e-30 120
Msa0079770 MtrunA17_Chr6g0474491 30.769 234 143 6 37 263 23 244 5.73e-30 116
Msa0079770 MtrunA17_Chr4g0045131 28.146 302 183 11 53 340 73 354 1.73e-29 116
Msa0079770 MtrunA17_Chr7g0228721 30.712 267 136 5 105 323 165 430 2.78e-29 117
Msa0079770 MtrunA17_Chr3g0095711 27.832 309 181 9 54 340 80 368 1.54e-28 114
Msa0079770 MtrunA17_Chr4g0045121 30.303 264 153 9 53 305 36 279 1.60e-27 110
Msa0079770 MtrunA17_Chr4g0045191 28.617 311 172 11 38 339 31 300 2.42e-27 109
Msa0079770 MtrunA17_Chr1g0205871 29.293 297 168 9 38 314 21 295 2.01e-26 107
Msa0079770 MtrunA17_Chr5g0394251 27.437 277 172 7 54 315 40 302 2.79e-26 107
Msa0079770 MtrunA17_Chr5g0394241 26.073 303 182 9 23 307 12 290 7.61e-25 102
Msa0079770 MtrunA17_Chr8g0353951 26.230 305 190 9 54 341 43 329 2.18e-24 101
Msa0079770 MtrunA17_Chr7g0233871 31.343 268 149 8 65 315 48 297 2.32e-24 101
Msa0079770 MtrunA17_Chr1g0205781 31.707 287 150 11 38 305 25 284 1.07e-23 99.8
Msa0079770 MtrunA17_Chr5g0394211 26.780 295 177 9 38 314 56 329 1.72e-23 99.8
Msa0079770 MtrunA17_Chr1g0205791 31.641 256 137 8 65 305 46 278 6.10e-23 97.8
Msa0079770 MtrunA17_Chr6g0474611 37.079 89 49 1 183 264 3 91 1.14e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079770 AT5G27320.1 76.744 344 79 1 1 344 1 343 0.0 567
Msa0079770 AT3G05120.1 75.072 345 85 1 1 344 1 345 0.0 555
Msa0079770 AT3G63010.1 69.477 344 102 3 1 342 1 343 0.0 509
Msa0079770 AT5G23530.1 36.390 349 192 7 1 341 1 327 1.57e-68 218
Msa0079770 AT5G62180.1 33.449 287 172 7 32 308 15 292 6.64e-42 149
Msa0079770 AT1G68620.1 35.433 254 143 5 62 308 57 296 3.82e-41 147
Msa0079770 AT5G06570.3 33.651 315 170 8 47 342 48 342 5.03e-40 144
Msa0079770 AT5G06570.4 33.651 315 170 8 47 342 48 342 5.03e-40 144
Msa0079770 AT5G06570.1 33.651 315 170 8 47 342 33 327 5.04e-40 144
Msa0079770 AT5G06570.2 33.651 315 170 8 47 342 33 327 5.04e-40 144
Msa0079770 AT5G16080.1 32.000 300 166 8 53 336 53 330 6.19e-38 139
Msa0079770 AT1G47480.1 30.070 286 175 6 33 314 16 280 3.29e-35 130
Msa0079770 AT2G45610.1 32.095 296 171 9 32 312 16 296 1.30e-34 129
Msa0079770 AT2G45600.1 33.585 265 144 7 65 312 39 288 3.59e-34 128
Msa0079770 AT2G03550.1 31.230 317 180 10 39 341 19 311 5.26e-34 127
Msa0079770 AT1G19190.1 32.039 309 172 11 53 344 30 317 6.90e-34 127
Msa0079770 AT3G48700.1 33.231 325 163 13 50 343 27 328 2.61e-33 126
Msa0079770 AT5G14310.1 31.439 264 135 4 105 323 151 413 5.08e-33 127
Msa0079770 AT3G48690.1 32.234 273 151 7 50 305 27 282 8.68e-33 124
Msa0079770 AT3G27320.2 33.080 263 131 5 105 323 134 395 4.74e-31 122
Msa0079770 AT3G27320.1 33.080 263 131 5 105 323 166 427 6.58e-31 122
Msa0079770 AT1G49650.1 30.798 263 158 7 53 305 86 334 7.23e-29 115
Msa0079770 AT1G49640.1 29.020 255 165 5 54 304 32 274 2.35e-26 107
Msa0079770 AT1G49660.1 30.038 263 157 6 53 303 30 277 2.54e-26 107

Find 153 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGATATGGTTCTATTTC+TGG 0.132714 1_2:+57758284 Msa0079770:three_prime_UTR
GTTATATATATAACTAATTT+TGG 0.139303 1_2:+57758360 Msa0079770:three_prime_UTR
GGGAGCTATGGCCATGTTTA+TGG 0.200844 1_2:+57758209 Msa0079770:three_prime_UTR
CACCCACCCCATCAGGAAAT+TGG 0.222970 1_2:+57758148 Msa0079770:three_prime_UTR
ACAGAGAAATGCTCATTATT+TGG 0.229509 1_2:-57757897 None:intergenic
AAATGCTTCTTCTTTCTTGA+TGG 0.233142 1_2:+57756260 Msa0079770:five_prime_UTR
ACGTCTTTGCAAATGTAAAT+AGG 0.243260 1_2:+57758544 Msa0079770:three_prime_UTR
CCATCAAGGCTTCGACCTTT+TGG 0.246635 1_2:-57757726 None:intergenic
TTGTCGTCTCGGTGAATTAT+AGG 0.247260 1_2:+57757346 Msa0079770:CDS
ATGGGTGGAAAGCTGTTAAA+TGG 0.260029 1_2:+57757406 Msa0079770:CDS
CTTCAGTTGTCCTCCTTGTT+TGG 0.278009 1_2:+57758515 Msa0079770:three_prime_UTR
AAGAGTCTTGTGGTGGTTGC+TGG 0.278599 1_2:+57757762 Msa0079770:CDS
TAATGTTACCTTTGAATCAT+TGG 0.295142 1_2:-57756382 None:intergenic
TGATCTCTGTCTTCCCCTTC+AGG 0.298031 1_2:-57757681 None:intergenic
TGCTGGTTTGGATCTTGTTC+AGG 0.302371 1_2:+57757779 Msa0079770:CDS
TCTCCTCCTTCATTCACCTT+TGG 0.302485 1_2:+57756231 Msa0079770:five_prime_UTR
ATTGTATGCTAACTTGAAAT+TGG 0.306162 1_2:-57757001 None:intergenic
TATCATATAAGTTCCTAATC+AGG 0.325409 1_2:-57758062 None:intergenic
AATGTTACCTTTGAATCATT+GGG 0.326815 1_2:-57756381 None:intergenic
TCTTGTGGTGGTTGCTGGTT+TGG 0.332790 1_2:+57757767 Msa0079770:CDS
TCCAGCTTTCTCAAGTCCTT+TGG 0.334783 1_2:-57757820 None:intergenic
TCCACAGGATTCGCATTTGC+TGG 0.346221 1_2:-57757087 None:intergenic
AGCATTGGACTCTGGGATTC+CGG 0.350883 1_2:+57757533 Msa0079770:CDS
AGGACTTTGCTCCCCTGATT+AGG 0.354879 1_2:+57758049 Msa0079770:three_prime_UTR
GCAACCACCACAAGACTCTT+AGG 0.357754 1_2:-57757759 None:intergenic
ATAGGCGTGCGCCTGAAAAT+AGG 0.363489 1_2:+57757364 Msa0079770:CDS
CTTGTTCAGGATTGGCAATT+GGG 0.363782 1_2:+57757792 Msa0079770:CDS
TCTTGTTCAGGATTGGCAAT+TGG 0.368427 1_2:+57757791 Msa0079770:CDS
GACTCTGGGATTCCGGTGTT+GGG 0.383791 1_2:+57757540 Msa0079770:CDS
TGGCTATGTTGCGGTGTGAT+TGG 0.392294 1_2:+57756128 Msa0079770:five_prime_UTR
CATTGAAAGCATTGGACTCT+GGG 0.392347 1_2:+57757526 Msa0079770:CDS
GGACTCTGGGATTCCGGTGT+TGG 0.395996 1_2:+57757539 Msa0079770:CDS
ATACTGCTAAACCCTTTGTT+TGG 0.396562 1_2:+57757567 Msa0079770:CDS
ATTAATTGTGTCTGTGAGAT+TGG 0.399827 1_2:+57758084 Msa0079770:three_prime_UTR
GAAGATATGGTTCTATTTCT+GGG 0.401998 1_2:+57758285 Msa0079770:three_prime_UTR
TTCTCGAGCAAGCCACGGTT+GGG 0.404625 1_2:+57757862 Msa0079770:CDS
GGAAGAACCTCAGCAGTAAC+AGG 0.409700 1_2:-57757222 None:intergenic
GTTTGGATCTTGTTCAGGAT+TGG 0.415765 1_2:+57757784 Msa0079770:CDS
AGAAAATGCTAAAGTAAAAC+AGG 0.416926 1_2:-57756169 None:intergenic
GAATCCGAAAAGCGTCTTGA+TGG 0.417426 1_2:+57757606 Msa0079770:CDS
TGAAAGATAGAGACTGGTAT+TGG 0.418998 1_2:+57757646 Msa0079770:CDS
GGAGCTATGGCCATGTTTAT+GGG 0.420489 1_2:+57758210 Msa0079770:three_prime_UTR
TGTTGTTCTTCTCCCTCAAC+AGG 0.421393 1_2:-57757174 None:intergenic
CATCACGCGTGTAACCCTTT+TGG 0.421489 1_2:+57757702 Msa0079770:CDS
CGAATCTACCGTCCTGTTGA+GGG 0.426280 1_2:+57757162 Msa0079770:CDS
TCTGGAGCACCCACCCCATC+AGG 0.427760 1_2:+57758141 Msa0079770:three_prime_UTR
CCAAAAGGTCGAAGCCTTGA+TGG 0.429491 1_2:+57757726 Msa0079770:CDS
TGCTAAACCCTTTGTTTGGC+GGG 0.429653 1_2:+57757571 Msa0079770:CDS
GTGGGTAATCACAACTTTAG+TGG 0.434751 1_2:-57758235 None:intergenic
ATTTGGATTGTGGTTGGTTG+TGG 0.435688 1_2:+57756108 None:intergenic
AGTTGGTTACTTCCAGCCAT+TGG 0.441895 1_2:-57756354 None:intergenic
CAGTGGGGCTTGCCCTTGTA+TGG 0.443406 1_2:+57758332 Msa0079770:three_prime_UTR
AACAAAATCAATCCAATGGC+TGG 0.444127 1_2:+57756342 Msa0079770:exon
TTGTCCTCCTTGTTTGGCAA+TGG 0.447399 1_2:+57758521 Msa0079770:three_prime_UTR
ATCAAAACCCACATGTTCAA+TGG 0.451446 1_2:-57756976 None:intergenic
ACCCACCCCATCAGGAAATT+GGG 0.453005 1_2:+57758149 Msa0079770:three_prime_UTR
CCTGTTGTCATGTTCTTCCA+CGG 0.459630 1_2:+57757243 Msa0079770:CDS
TATCCTTGCGCTTATGAAGA+TGG 0.468068 1_2:+57757387 Msa0079770:CDS
ATCATATAAGTTCCTAATCA+GGG 0.469230 1_2:-57758061 None:intergenic
GCATTGAAAGCATTGGACTC+TGG 0.474324 1_2:+57757525 Msa0079770:CDS
TTTCTCGAGCAAGCCACGGT+TGG 0.476045 1_2:+57757861 Msa0079770:CDS
TGGGTGGAAAGCTGTTAAAT+GGG 0.477103 1_2:+57757407 Msa0079770:CDS
CTAAAGTAAAACAGGAATGA+AGG 0.478351 1_2:-57756161 None:intergenic
CAAGGGCAAGCCCCACTGAT+TGG 0.481696 1_2:-57758327 None:intergenic
GAGTGGTGAAGGATAAGAAA+AGG 0.484696 1_2:-57756202 None:intergenic
CTACATGGTTGGTGATAGCT+CGG 0.486021 1_2:+57757479 Msa0079770:CDS
TTGTAATGCTGTTGTCGTCT+CGG 0.487442 1_2:+57757335 Msa0079770:CDS
GGAGAAGAGAAGAGTGGTGA+AGG 0.487809 1_2:-57756213 None:intergenic
CTTTCTTCCCCGCCAAACAA+AGG 0.487810 1_2:-57757579 None:intergenic
CACCCAATTTCCTGATGGGG+TGG 0.488269 1_2:-57758151 None:intergenic
CTGCTAAACCCTTTGTTTGG+CGG 0.491910 1_2:+57757570 Msa0079770:CDS
GTAGATTCGAGTAAGGAGAT+TGG 0.497470 1_2:-57757148 None:intergenic
CCCACTGATTGGCCATCAAA+AGG 0.497804 1_2:-57758316 None:intergenic
TGGAACTTTCAACCGTGACT+TGG 0.499887 1_2:+57757041 Msa0079770:CDS
CCGTGGAAGAACATGACAAC+AGG 0.502089 1_2:-57757243 None:intergenic
TATCCAACCTTGTGTGGCAT+AGG 0.503411 1_2:-57758648 None:intergenic
GCCAAAGGACTTGAGAAAGC+TGG 0.509171 1_2:+57757819 Msa0079770:CDS
TTTCTTCCCCGCCAAACAAA+GGG 0.509175 1_2:-57757578 None:intergenic
TGCCTTTCCTAAGAGTCTTG+TGG 0.514282 1_2:+57757752 Msa0079770:CDS
GGGTGTTGCGGATAGGTGAA+AGG 0.515509 1_2:+57758169 Msa0079770:three_prime_UTR
AATCTTCTCCGTCGTCCTGA+TGG 0.518337 1_2:+57757021 Msa0079770:CDS
CGCAACACCCAATTTCCTGA+TGG 0.518629 1_2:-57758156 None:intergenic
TATATAACACTTGCCATACA+AGG 0.518680 1_2:-57758345 None:intergenic
CAAAAGGTCGAAGCCTTGAT+GGG 0.521272 1_2:+57757727 Msa0079770:CDS
CTTCCTATGCCACACAAGGT+TGG 0.527827 1_2:+57758645 Msa0079770:three_prime_UTR
TTGAATCATTGGGGTTGAGT+TGG 0.528438 1_2:-57756371 None:intergenic
TGATACATTGTGTCGTCGAT+TGG 0.529626 1_2:+57757305 Msa0079770:CDS
CCATGTTGCATTGAAAGCAT+TGG 0.529699 1_2:+57757518 Msa0079770:CDS
AATGGGTTAACTCTAGAACT+TGG 0.530294 1_2:+57757424 Msa0079770:CDS
ACAGGAATGAAGGGAAAGAA+TGG 0.532589 1_2:-57756151 None:intergenic
AACGGTGTGTATTTGGATTG+TGG 0.541471 1_2:+57756098 None:intergenic
TCGAATCTACCGTCCTGTTG+AGG 0.542489 1_2:+57757161 Msa0079770:CDS
GAAGATCCAAAGGTGAATGA+AGG 0.544391 1_2:-57756237 None:intergenic
TCACGGTTGAAAGTTCCATC+AGG 0.545176 1_2:-57757036 None:intergenic
ACTTGGCAGAGTTTCTTGAT+CGG 0.546431 1_2:+57757058 Msa0079770:CDS
ATCCTTGCGCTTATGAAGAT+GGG 0.546497 1_2:+57757388 Msa0079770:CDS
GCAACACCCAATTTCCTGAT+GGG 0.551741 1_2:-57758155 None:intergenic
AAAGCATCAATCATATATGT+TGG 0.556799 1_2:+57758396 Msa0079770:three_prime_UTR
GGAAATTGGGTGTTGCGGAT+AGG 0.557101 1_2:+57758162 Msa0079770:three_prime_UTR
AATCCGAAAAGCGTCTTGAT+GGG 0.557814 1_2:+57757607 Msa0079770:CDS
TCAGAGTGAAAGATAGAGAC+TGG 0.557918 1_2:+57757640 Msa0079770:CDS
AGCAAATATCCAACCTTGTG+TGG 0.558731 1_2:-57758654 None:intergenic
GTGTGTATTTGGATTGTGGT+TGG 0.566404 1_2:+57756102 None:intergenic
GAAGGAGGAGAAGAGAAGAG+TGG 0.568713 1_2:-57756219 None:intergenic
TAAAGTAAAACAGGAATGAA+GGG 0.568741 1_2:-57756160 None:intergenic
AGCAGTATATTTCCCAACAC+CGG 0.572967 1_2:-57757552 None:intergenic
CAGGACGGTAGATTCGAGTA+AGG 0.573555 1_2:-57757155 None:intergenic
TAGGAAAGGCAACCCCATCA+AGG 0.574933 1_2:-57757740 None:intergenic
CACCCATCTTCATAAGCGCA+AGG 0.575641 1_2:-57757390 None:intergenic
AAGGTTCATATCTACATGGT+TGG 0.580511 1_2:+57757468 Msa0079770:CDS
TGAGCATTTCTCTGTTGTCA+TGG 0.580679 1_2:+57757905 Msa0079770:CDS
CTTTCCTAAGAGTCTTGTGG+TGG 0.585467 1_2:+57757755 Msa0079770:CDS
AAGACGTCCATTGCCAAACA+AGG 0.587397 1_2:-57758528 None:intergenic
ATGGTTGGTGATAGCTCGGG+CGG 0.594503 1_2:+57757483 Msa0079770:CDS
TACATGGTTGGTGATAGCTC+GGG 0.594607 1_2:+57757480 Msa0079770:CDS
ACATTGTGTCGTCGATTGGT+TGG 0.596982 1_2:+57757309 Msa0079770:CDS
AGAAGCATTTGAAGATCCAA+AGG 0.597630 1_2:-57756247 None:intergenic
CAGCAGTAACAGGCTTCTCA+AGG 0.598120 1_2:-57757212 None:intergenic
TGGTGGTTCCATTGAACATG+TGG 0.598890 1_2:+57756968 Msa0079770:CDS
CATCAGGAAATTGGGTGTTG+CGG 0.599996 1_2:+57758157 Msa0079770:three_prime_UTR
TGAGAAGCCTGTTACTGCTG+AGG 0.600623 1_2:+57757215 Msa0079770:CDS
ACTCAACCCCAATGATTCAA+AGG 0.601718 1_2:+57756374 Msa0079770:CDS
ATGTTACCTTTGAATCATTG+GGG 0.602888 1_2:-57756380 None:intergenic
ACTCAACAAAATCAATCCAA+TGG 0.603090 1_2:+57756338 Msa0079770:exon
GGGTCTTCCTATGCCACACA+AGG 0.603642 1_2:+57758641 Msa0079770:three_prime_UTR
GCTATTTCTCGAGCAAGCCA+CGG 0.605537 1_2:+57757857 Msa0079770:CDS
GCTAAACCCTTTGTTTGGCG+GGG 0.608927 1_2:+57757572 Msa0079770:CDS
AAAGAGAAAACACCATCCAC+AGG 0.610297 1_2:-57757102 None:intergenic
ACCCAATTTCCTGATGGGGT+GGG 0.611604 1_2:-57758150 None:intergenic
CAAGAAACTCTGCCAAGTCA+CGG 0.617005 1_2:-57757053 None:intergenic
TGAAAGTTCCATCAGGACGA+CGG 0.623383 1_2:-57757029 None:intergenic
CAACACCCAATTTCCTGATG+GGG 0.624348 1_2:-57758154 None:intergenic
TAGCAAGGTTCATATCTACA+TGG 0.626488 1_2:+57757464 Msa0079770:CDS
TTTAGTGGTTCCCATAAACA+TGG 0.629664 1_2:-57758220 None:intergenic
GTTCTTCTCCCTCAACAGGA+CGG 0.631361 1_2:-57757170 None:intergenic
TGGCAATTGGGATATGCCAA+AGG 0.633591 1_2:+57757804 Msa0079770:CDS
CTTGCGCTTATGAAGATGGG+TGG 0.634175 1_2:+57757391 Msa0079770:CDS
TCCAGCAAATGCGAATCCTG+TGG 0.635598 1_2:+57757086 Msa0079770:CDS
CACCACAAGACTCTTAGGAA+AGG 0.635838 1_2:-57757754 None:intergenic
GATCCAAAGGTGAATGAAGG+AGG 0.637419 1_2:-57756234 None:intergenic
CCAATGCTTTCAATGCAACA+TGG 0.638442 1_2:-57757518 None:intergenic
GGTTGGTTGTGGCTATGTTG+CGG 0.645031 1_2:+57756119 Msa0079770:five_prime_UTR
GGTGGTTCCATTGAACATGT+GGG 0.653078 1_2:+57756969 Msa0079770:CDS
TCATATAAGTTCCTAATCAG+GGG 0.655979 1_2:-57758060 None:intergenic
AAAAGGTCGAAGCCTTGATG+GGG 0.659766 1_2:+57757728 Msa0079770:CDS
ATATAACACTTGCCATACAA+GGG 0.663659 1_2:-57758344 None:intergenic
TGGTTGGTGATAGCTCGGGC+GGG 0.665839 1_2:+57757484 Msa0079770:CDS
CTATATAGAGAAAAGATGAA+CGG 0.667855 1_2:-57758472 None:intergenic
GTTGTCATGTTCTTCCACGG+TGG 0.676583 1_2:+57757246 Msa0079770:CDS
GCAAATGCGAATCCTGTGGA+TGG 0.677631 1_2:+57757090 Msa0079770:CDS
ACGTCCATTGCCAAACAAGG+AGG 0.708889 1_2:-57758525 None:intergenic
TAGCAAGTAAAACCCAACCG+TGG 0.774514 1_2:-57757874 None:intergenic
AATGTGCAAAACTTCCACCG+TGG 0.777602 1_2:-57757260 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCATTTTTTAATATTGTTA+TGG + chr1_2:57756697-57756716 Msa0079770:intron 10.0%
!!! GTTATATATATAACTAATTT+TGG + chr1_2:57758360-57758379 Msa0079770:three_prime_UTR 10.0%
!!! TTTTGTTTCATACAAATTTA+AGG + chr1_2:57756482-57756501 Msa0079770:intron 15.0%
!! TCTTAATTTCTCTAAATTAA+TGG + chr1_2:57756824-57756843 Msa0079770:intron 15.0%
!! CTTAATTTCTCTAAATTAAT+GGG + chr1_2:57756825-57756844 Msa0079770:intron 15.0%
!!! TTTGGTTTAAAATTTCATTT+TGG + chr1_2:57756848-57756867 Msa0079770:intron 15.0%
!! ATTAAAAACAAGTTAATAAG+TGG - chr1_2:57758027-57758046 None:intergenic 15.0%
!!! TATTAACTTGTTTTTAATGT+AGG + chr1_2:57758029-57758048 Msa0079770:three_prime_UTR 15.0%
!! ACAAAAGAACAAAAAATCAA+AGG - chr1_2:57756540-57756559 None:intergenic 20.0%
!!! ATCAGTGTAATAAATAGTTT+TGG + chr1_2:57756670-57756689 Msa0079770:intron 20.0%
!!! TCAGTGTAATAAATAGTTTT+GGG + chr1_2:57756671-57756690 Msa0079770:intron 20.0%
!!! GATGTAATAGTTTTTTATGT+TGG + chr1_2:57756730-57756749 Msa0079770:intron 20.0%
!!! TAATAGTTTTTTATGTTGGT+TGG + chr1_2:57756734-57756753 Msa0079770:intron 20.0%
!!! TATAGCTATATTATGTTTTC+TGG + chr1_2:57758123-57758142 Msa0079770:three_prime_UTR 20.0%
!!! GTATTGTGTTTTTTTATGTA+TGG + chr1_2:57758603-57758622 Msa0079770:three_prime_UTR 20.0%
!!! TATGGATAAGATATTTTTCA+GGG + chr1_2:57758621-57758640 Msa0079770:three_prime_UTR 20.0%
! TAAAGTAAAACAGGAATGAA+GGG - chr1_2:57756163-57756182 None:intergenic 25.0%
! AGAAAATGCTAAAGTAAAAC+AGG - chr1_2:57756172-57756191 None:intergenic 25.0%
! AATGTTACCTTTGAATCATT+GGG - chr1_2:57756384-57756403 None:intergenic 25.0%
! TAATGTTACCTTTGAATCAT+TGG - chr1_2:57756385-57756404 None:intergenic 25.0%
! TTAGACTTTGTCAATGTTTA+GGG + chr1_2:57756781-57756800 Msa0079770:intron 25.0%
!!! TTTCTCTAAATTAATGGGTT+TGG + chr1_2:57756830-57756849 Msa0079770:intron 25.0%
! TAGATAAAATTTGATGCAGA+TGG + chr1_2:57756948-57756967 Msa0079770:intron 25.0%
! ATTGTATGCTAACTTGAAAT+TGG - chr1_2:57757004-57757023 None:intergenic 25.0%
!! CTTTTGATGTTATTGTTGAT+CGG + chr1_2:57757121-57757140 Msa0079770:CDS 25.0%
!! TTTTGATGTTATTGTTGATC+GGG + chr1_2:57757122-57757141 Msa0079770:CDS 25.0%
! ATCATATAAGTTCCTAATCA+GGG - chr1_2:57758064-57758083 None:intergenic 25.0%
! TATCATATAAGTTCCTAATC+AGG - chr1_2:57758065-57758084 None:intergenic 25.0%
!!! AAAGGTTTTTAGGACAAAAA+AGG + chr1_2:57758187-57758206 Msa0079770:three_prime_UTR 25.0%
!!! AAGGTTTTTAGGACAAAAAA+GGG + chr1_2:57758188-57758207 Msa0079770:three_prime_UTR 25.0%
!!! ACTAATTTTGGAACTATGAT+AGG + chr1_2:57758372-57758391 Msa0079770:three_prime_UTR 25.0%
!!! CTAATTTTGGAACTATGATA+GGG + chr1_2:57758373-57758392 Msa0079770:three_prime_UTR 25.0%
!! AAAGCATCAATCATATATGT+TGG + chr1_2:57758396-57758415 Msa0079770:three_prime_UTR 25.0%
! CTATATAGAGAAAAGATGAA+CGG - chr1_2:57758475-57758494 None:intergenic 25.0%
!!! TCTTTTACTTTTAGCTGTAA+TGG + chr1_2:57758572-57758591 Msa0079770:three_prime_UTR 25.0%
!! GTATGGATAAGATATTTTTC+AGG + chr1_2:57758620-57758639 Msa0079770:three_prime_UTR 25.0%
CTAAAGTAAAACAGGAATGA+AGG - chr1_2:57756164-57756183 None:intergenic 30.0%
AAATGCTTCTTCTTTCTTGA+TGG + chr1_2:57756260-57756279 Msa0079770:five_prime_UTR 30.0%
! TGATTTTGTTGAGTGTAGAT+CGG - chr1_2:57756332-57756351 None:intergenic 30.0%
ACTCAACAAAATCAATCCAA+TGG + chr1_2:57756338-57756357 Msa0079770:exon 30.0%
ATGTTACCTTTGAATCATTG+GGG - chr1_2:57756383-57756402 None:intergenic 30.0%
ATACTATACTATGTTGCTGT+TGG + chr1_2:57756440-57756459 Msa0079770:intron 30.0%
GGAAAGAAATAAACATCGTA+CGG - chr1_2:57756510-57756529 None:intergenic 30.0%
CAAAAAATCAAAGGCGAAAA+AGG - chr1_2:57756531-57756550 None:intergenic 30.0%
!! GTTTAGTCTTTTTCTTTCGT+TGG + chr1_2:57756558-57756577 Msa0079770:intron 30.0%
!!! AGTTTTTTATGTTGGTTGGT+TGG + chr1_2:57756738-57756757 Msa0079770:intron 30.0%
! ACAAAGTCTAAGATAGAAAC+AGG - chr1_2:57756772-57756791 None:intergenic 30.0%
CTTAGACTTTGTCAATGTTT+AGG + chr1_2:57756780-57756799 Msa0079770:intron 30.0%
! ATGTTTAGGGTTTGGTTATT+TGG + chr1_2:57756794-57756813 Msa0079770:intron 30.0%
AATCAGAAACTAGCTACAAA+AGG - chr1_2:57756888-57756907 None:intergenic 30.0%
ATAAAATTTGATGCAGATGG+TGG + chr1_2:57756951-57756970 Msa0079770:intron 30.0%
ACAGAGAAATGCTCATTATT+TGG - chr1_2:57757900-57757919 None:intergenic 30.0%
TCATATAAGTTCCTAATCAG+GGG - chr1_2:57758063-57758082 None:intergenic 30.0%
ATTAATTGTGTCTGTGAGAT+TGG + chr1_2:57758084-57758103 Msa0079770:three_prime_UTR 30.0%
!!! AGGTTTTTAGGACAAAAAAG+GGG + chr1_2:57758189-57758208 Msa0079770:three_prime_UTR 30.0%
! GAAGATATGGTTCTATTTCT+GGG + chr1_2:57758285-57758304 Msa0079770:three_prime_UTR 30.0%
ATATAACACTTGCCATACAA+GGG - chr1_2:57758347-57758366 None:intergenic 30.0%
TATATAACACTTGCCATACA+AGG - chr1_2:57758348-57758367 None:intergenic 30.0%
ACGTCTTTGCAAATGTAAAT+AGG + chr1_2:57758544-57758563 Msa0079770:three_prime_UTR 30.0%
!! TTACTTTTAGCTGTAATGGT+AGG + chr1_2:57758576-57758595 Msa0079770:three_prime_UTR 30.0%
!! TACTTTTAGCTGTAATGGTA+GGG + chr1_2:57758577-57758596 Msa0079770:three_prime_UTR 30.0%
!! AGAAGCATTTGAAGATCCAA+AGG - chr1_2:57756250-57756269 None:intergenic 35.0%
TGAGTGTAGATCGGTAAAAA+AGG - chr1_2:57756323-57756342 None:intergenic 35.0%
AACAAAATCAATCCAATGGC+TGG + chr1_2:57756342-57756361 Msa0079770:exon 35.0%
!! GTCTTTTTCTTTCGTTGGTT+TGG + chr1_2:57756563-57756582 Msa0079770:intron 35.0%
!!! TTTTCTTTCGTTGGTTTGGT+TGG + chr1_2:57756567-57756586 Msa0079770:intron 35.0%
! CTTTGTCAATGTTTAGGGTT+TGG + chr1_2:57756786-57756805 Msa0079770:intron 35.0%
! TAGGGTTTGGTTATTTGGTT+TGG + chr1_2:57756799-57756818 Msa0079770:intron 35.0%
ATCAAAACCCACATGTTCAA+TGG - chr1_2:57756979-57756998 None:intergenic 35.0%
! TGGAAGTTTTGCACATTCTT+CGG + chr1_2:57757266-57757285 Msa0079770:CDS 35.0%
!! AATGGGTTAACTCTAGAACT+TGG + chr1_2:57757424-57757443 Msa0079770:CDS 35.0%
GCAGAGTAAAAAAGATAGCA+AGG + chr1_2:57757449-57757468 Msa0079770:CDS 35.0%
TAGCAAGGTTCATATCTACA+TGG + chr1_2:57757464-57757483 Msa0079770:CDS 35.0%
AAGGTTCATATCTACATGGT+TGG + chr1_2:57757468-57757487 Msa0079770:CDS 35.0%
ATACTGCTAAACCCTTTGTT+TGG + chr1_2:57757567-57757586 Msa0079770:CDS 35.0%
TGAAAGATAGAGACTGGTAT+TGG + chr1_2:57757646-57757665 Msa0079770:CDS 35.0%
! TTAACTTTTGCCACACAAGA+AGG + chr1_2:57757967-57757986 Msa0079770:three_prime_UTR 35.0%
! TAACTTTTGCCACACAAGAA+GGG + chr1_2:57757968-57757987 Msa0079770:three_prime_UTR 35.0%
!!! GGGTTTTAGAAAGATTGTGT+AGG + chr1_2:57757990-57758009 Msa0079770:three_prime_UTR 35.0%
TTTAGTGGTTCCCATAAACA+TGG - chr1_2:57758223-57758242 None:intergenic 35.0%
!! TTTTGGCTGAAAGTCAAAGT+GGG - chr1_2:57758256-57758275 None:intergenic 35.0%
!!! TTTTTGGCTGAAAGTCAAAG+TGG - chr1_2:57758257-57758276 None:intergenic 35.0%
! TTTGACTTTCAGCCAAAAAG+AGG + chr1_2:57758258-57758277 Msa0079770:three_prime_UTR 35.0%
! ATATCTTCCTCTCCTCTTTT+TGG - chr1_2:57758273-57758292 None:intergenic 35.0%
AAAAAGAGGAGAGGAAGATA+TGG + chr1_2:57758272-57758291 Msa0079770:three_prime_UTR 35.0%
! GGAAGATATGGTTCTATTTC+TGG + chr1_2:57758284-57758303 Msa0079770:three_prime_UTR 35.0%
ACAGGAATGAAGGGAAAGAA+TGG - chr1_2:57756154-57756173 None:intergenic 40.0%
GAGTGGTGAAGGATAAGAAA+AGG - chr1_2:57756205-57756224 None:intergenic 40.0%
GAAGATCCAAAGGTGAATGA+AGG - chr1_2:57756240-57756259 None:intergenic 40.0%
TTGAATCATTGGGGTTGAGT+TGG - chr1_2:57756374-57756393 None:intergenic 40.0%
ACTCAACCCCAATGATTCAA+AGG + chr1_2:57756374-57756393 Msa0079770:CDS 40.0%
ACTTGGCAGAGTTTCTTGAT+CGG + chr1_2:57757058-57757077 Msa0079770:CDS 40.0%
AAAGAGAAAACACCATCCAC+AGG - chr1_2:57757105-57757124 None:intergenic 40.0%
GTAGATTCGAGTAAGGAGAT+TGG - chr1_2:57757151-57757170 None:intergenic 40.0%
TGATACATTGTGTCGTCGAT+TGG + chr1_2:57757305-57757324 Msa0079770:CDS 40.0%
TTGTAATGCTGTTGTCGTCT+CGG + chr1_2:57757335-57757354 Msa0079770:CDS 40.0%
TTGTCGTCTCGGTGAATTAT+AGG + chr1_2:57757346-57757365 Msa0079770:CDS 40.0%
TATCCTTGCGCTTATGAAGA+TGG + chr1_2:57757387-57757406 Msa0079770:CDS 40.0%
ATCCTTGCGCTTATGAAGAT+GGG + chr1_2:57757388-57757407 Msa0079770:CDS 40.0%
ATGGGTGGAAAGCTGTTAAA+TGG + chr1_2:57757406-57757425 Msa0079770:CDS 40.0%
TGGGTGGAAAGCTGTTAAAT+GGG + chr1_2:57757407-57757426 Msa0079770:CDS 40.0%
CCAATGCTTTCAATGCAACA+TGG - chr1_2:57757521-57757540 None:intergenic 40.0%
! CCATGTTGCATTGAAAGCAT+TGG + chr1_2:57757518-57757537 Msa0079770:CDS 40.0%
!! CATTGAAAGCATTGGACTCT+GGG + chr1_2:57757526-57757545 Msa0079770:CDS 40.0%
AGCAGTATATTTCCCAACAC+CGG - chr1_2:57757555-57757574 None:intergenic 40.0%
!! AATCCGAAAAGCGTCTTGAT+GGG + chr1_2:57757607-57757626 Msa0079770:CDS 40.0%
TCAGAGTGAAAGATAGAGAC+TGG + chr1_2:57757640-57757659 Msa0079770:CDS 40.0%
! TGTAACCCTTTTGGTCCAAA+AGG + chr1_2:57757711-57757730 Msa0079770:CDS 40.0%
! TTCGACCTTTTGGACCAAAA+GGG - chr1_2:57757719-57757738 None:intergenic 40.0%
GTTTGGATCTTGTTCAGGAT+TGG + chr1_2:57757784-57757803 Msa0079770:CDS 40.0%
! TCTTGTTCAGGATTGGCAAT+TGG + chr1_2:57757791-57757810 Msa0079770:CDS 40.0%
! CTTGTTCAGGATTGGCAATT+GGG + chr1_2:57757792-57757811 Msa0079770:CDS 40.0%
TGAGCATTTCTCTGTTGTCA+TGG + chr1_2:57757905-57757924 Msa0079770:CDS 40.0%
! AACTTTTGCCACACAAGAAG+GGG + chr1_2:57757969-57757988 Msa0079770:three_prime_UTR 40.0%
! CGGATAGGTGAAAGGTTTTT+AGG + chr1_2:57758177-57758196 Msa0079770:three_prime_UTR 40.0%
GTGGGTAATCACAACTTTAG+TGG - chr1_2:57758238-57758257 None:intergenic 40.0%
AGCAAATATCCAACCTTGTG+TGG - chr1_2:57758657-57758676 None:intergenic 40.0%
TCTCCTCCTTCATTCACCTT+TGG + chr1_2:57756231-57756250 Msa0079770:five_prime_UTR 45.0%
GATCCAAAGGTGAATGAAGG+AGG - chr1_2:57756237-57756256 None:intergenic 45.0%
AGTTGGTTACTTCCAGCCAT+TGG - chr1_2:57756357-57756376 None:intergenic 45.0%
TGGTGGTTCCATTGAACATG+TGG + chr1_2:57756968-57756987 Msa0079770:CDS 45.0%
GGTGGTTCCATTGAACATGT+GGG + chr1_2:57756969-57756988 Msa0079770:CDS 45.0%
TGAAAGTTCCATCAGGACGA+CGG - chr1_2:57757032-57757051 None:intergenic 45.0%
TCACGGTTGAAAGTTCCATC+AGG - chr1_2:57757039-57757058 None:intergenic 45.0%
TGGAACTTTCAACCGTGACT+TGG + chr1_2:57757041-57757060 Msa0079770:CDS 45.0%
CAAGAAACTCTGCCAAGTCA+CGG - chr1_2:57757056-57757075 None:intergenic 45.0%
TGTTGTTCTTCTCCCTCAAC+AGG - chr1_2:57757177-57757196 None:intergenic 45.0%
CCTGTTGTCATGTTCTTCCA+CGG + chr1_2:57757243-57757262 Msa0079770:CDS 45.0%
AATGTGCAAAACTTCCACCG+TGG - chr1_2:57757263-57757282 None:intergenic 45.0%
! ACATTGTGTCGTCGATTGGT+TGG + chr1_2:57757309-57757328 Msa0079770:CDS 45.0%
! GCGCAAGGATACCTATTTTC+AGG - chr1_2:57757378-57757397 None:intergenic 45.0%
!! CTACATGGTTGGTGATAGCT+CGG + chr1_2:57757479-57757498 Msa0079770:CDS 45.0%
!! TACATGGTTGGTGATAGCTC+GGG + chr1_2:57757480-57757499 Msa0079770:CDS 45.0%
!! GCATTGAAAGCATTGGACTC+TGG + chr1_2:57757525-57757544 Msa0079770:CDS 45.0%
! CTGCTAAACCCTTTGTTTGG+CGG + chr1_2:57757570-57757589 Msa0079770:CDS 45.0%
! TGCTAAACCCTTTGTTTGGC+GGG + chr1_2:57757571-57757590 Msa0079770:CDS 45.0%
TTTCTTCCCCGCCAAACAAA+GGG - chr1_2:57757581-57757600 None:intergenic 45.0%
!! GAATCCGAAAAGCGTCTTGA+TGG + chr1_2:57757606-57757625 Msa0079770:CDS 45.0%
! TCTCCCATCAAGACGCTTTT+CGG - chr1_2:57757613-57757632 None:intergenic 45.0%
! TGGAGAGCTTTTCTTCCTGA+AGG + chr1_2:57757666-57757685 Msa0079770:CDS 45.0%
! GGAGAGCTTTTCTTCCTGAA+GGG + chr1_2:57757667-57757686 Msa0079770:CDS 45.0%
! GAGAGCTTTTCTTCCTGAAG+GGG + chr1_2:57757668-57757687 Msa0079770:CDS 45.0%
! CTTCGACCTTTTGGACCAAA+AGG - chr1_2:57757720-57757739 None:intergenic 45.0%
CAAAAGGTCGAAGCCTTGAT+GGG + chr1_2:57757727-57757746 Msa0079770:CDS 45.0%
AAAAGGTCGAAGCCTTGATG+GGG + chr1_2:57757728-57757747 Msa0079770:CDS 45.0%
TGCCTTTCCTAAGAGTCTTG+TGG + chr1_2:57757752-57757771 Msa0079770:CDS 45.0%
CACCACAAGACTCTTAGGAA+AGG - chr1_2:57757757-57757776 None:intergenic 45.0%
! CTTTCCTAAGAGTCTTGTGG+TGG + chr1_2:57757755-57757774 Msa0079770:CDS 45.0%
!! TGCTGGTTTGGATCTTGTTC+AGG + chr1_2:57757779-57757798 Msa0079770:CDS 45.0%
TGGCAATTGGGATATGCCAA+AGG + chr1_2:57757804-57757823 Msa0079770:CDS 45.0%
TCCAGCTTTCTCAAGTCCTT+TGG - chr1_2:57757823-57757842 None:intergenic 45.0%
TAGCAAGTAAAACCCAACCG+TGG - chr1_2:57757877-57757896 None:intergenic 45.0%
! ACTTTTGCCACACAAGAAGG+GGG + chr1_2:57757970-57757989 Msa0079770:three_prime_UTR 45.0%
! TCTAAAACCCCCTTCTTGTG+TGG - chr1_2:57757980-57757999 None:intergenic 45.0%
CAACACCCAATTTCCTGATG+GGG - chr1_2:57758157-57758176 None:intergenic 45.0%
GCAACACCCAATTTCCTGAT+GGG - chr1_2:57758158-57758177 None:intergenic 45.0%
! CATCAGGAAATTGGGTGTTG+CGG + chr1_2:57758157-57758176 Msa0079770:three_prime_UTR 45.0%
AGGACAAAAAAGGGGAGCTA+TGG + chr1_2:57758197-57758216 Msa0079770:three_prime_UTR 45.0%
GGAGCTATGGCCATGTTTAT+GGG + chr1_2:57758210-57758229 Msa0079770:three_prime_UTR 45.0%
CTTTCAGCCAAAAAGAGGAG+AGG + chr1_2:57758263-57758282 Msa0079770:three_prime_UTR 45.0%
! TGGGCTTTCTGACCTTTTGA+TGG + chr1_2:57758304-57758323 Msa0079770:three_prime_UTR 45.0%
!! ACCTTTTGATGGCCAATCAG+TGG + chr1_2:57758315-57758334 Msa0079770:three_prime_UTR 45.0%
!! CCTTTTGATGGCCAATCAGT+GGG + chr1_2:57758316-57758335 Msa0079770:three_prime_UTR 45.0%
!! CTTTTGATGGCCAATCAGTG+GGG + chr1_2:57758317-57758336 Msa0079770:three_prime_UTR 45.0%
CTTCAGTTGTCCTCCTTGTT+TGG + chr1_2:57758515-57758534 Msa0079770:three_prime_UTR 45.0%
! TTGTCCTCCTTGTTTGGCAA+TGG + chr1_2:57758521-57758540 Msa0079770:three_prime_UTR 45.0%
AAGACGTCCATTGCCAAACA+AGG - chr1_2:57758531-57758550 None:intergenic 45.0%
TATCCAACCTTGTGTGGCAT+AGG - chr1_2:57758651-57758670 None:intergenic 45.0%
! GGTTGGTTGTGGCTATGTTG+CGG + chr1_2:57756119-57756138 Msa0079770:five_prime_UTR 50.0%
TGGCTATGTTGCGGTGTGAT+TGG + chr1_2:57756128-57756147 Msa0079770:five_prime_UTR 50.0%
GGAGAAGAGAAGAGTGGTGA+AGG - chr1_2:57756216-57756235 None:intergenic 50.0%
GAAGGAGGAGAAGAGAAGAG+TGG - chr1_2:57756222-57756241 None:intergenic 50.0%
AATCTTCTCCGTCGTCCTGA+TGG + chr1_2:57757021-57757040 Msa0079770:CDS 50.0%
TCCAGCAAATGCGAATCCTG+TGG + chr1_2:57757086-57757105 Msa0079770:CDS 50.0%
TCCACAGGATTCGCATTTGC+TGG - chr1_2:57757090-57757109 None:intergenic 50.0%
GCAAATGCGAATCCTGTGGA+TGG + chr1_2:57757090-57757109 Msa0079770:CDS 50.0%
CAGGACGGTAGATTCGAGTA+AGG - chr1_2:57757158-57757177 None:intergenic 50.0%
TCGAATCTACCGTCCTGTTG+AGG + chr1_2:57757161-57757180 Msa0079770:CDS 50.0%
CGAATCTACCGTCCTGTTGA+GGG + chr1_2:57757162-57757181 Msa0079770:CDS 50.0%
GTTCTTCTCCCTCAACAGGA+CGG - chr1_2:57757173-57757192 None:intergenic 50.0%
CAGCAGTAACAGGCTTCTCA+AGG - chr1_2:57757215-57757234 None:intergenic 50.0%
TGAGAAGCCTGTTACTGCTG+AGG + chr1_2:57757215-57757234 Msa0079770:CDS 50.0%
GGAAGAACCTCAGCAGTAAC+AGG - chr1_2:57757225-57757244 None:intergenic 50.0%
CCGTGGAAGAACATGACAAC+AGG - chr1_2:57757246-57757265 None:intergenic 50.0%
GTTGTCATGTTCTTCCACGG+TGG + chr1_2:57757246-57757265 Msa0079770:CDS 50.0%
ATAGGCGTGCGCCTGAAAAT+AGG + chr1_2:57757364-57757383 Msa0079770:CDS 50.0%
CACCCATCTTCATAAGCGCA+AGG - chr1_2:57757393-57757412 None:intergenic 50.0%
CTTGCGCTTATGAAGATGGG+TGG + chr1_2:57757391-57757410 Msa0079770:CDS 50.0%
!! AGCATTGGACTCTGGGATTC+CGG + chr1_2:57757533-57757552 Msa0079770:CDS 50.0%
! GCTAAACCCTTTGTTTGGCG+GGG + chr1_2:57757572-57757591 Msa0079770:CDS 50.0%
CTTTCTTCCCCGCCAAACAA+AGG - chr1_2:57757582-57757601 None:intergenic 50.0%
TGATCTCTGTCTTCCCCTTC+AGG - chr1_2:57757684-57757703 None:intergenic 50.0%
! CATCACGCGTGTAACCCTTT+TGG + chr1_2:57757702-57757721 Msa0079770:CDS 50.0%
! CCATCAAGGCTTCGACCTTT+TGG - chr1_2:57757729-57757748 None:intergenic 50.0%
CCAAAAGGTCGAAGCCTTGA+TGG + chr1_2:57757726-57757745 Msa0079770:CDS 50.0%
TAGGAAAGGCAACCCCATCA+AGG - chr1_2:57757743-57757762 None:intergenic 50.0%
GCAACCACCACAAGACTCTT+AGG - chr1_2:57757762-57757781 None:intergenic 50.0%
! AAGAGTCTTGTGGTGGTTGC+TGG + chr1_2:57757762-57757781 Msa0079770:CDS 50.0%
! TCTTGTGGTGGTTGCTGGTT+TGG + chr1_2:57757767-57757786 Msa0079770:CDS 50.0%
GCCAAAGGACTTGAGAAAGC+TGG + chr1_2:57757819-57757838 Msa0079770:CDS 50.0%
!! GCTATTTCTCGAGCAAGCCA+CGG + chr1_2:57757857-57757876 Msa0079770:CDS 50.0%
AGGACTTTGCTCCCCTGATT+AGG + chr1_2:57758049-57758068 Msa0079770:three_prime_UTR 50.0%
ACCCACCCCATCAGGAAATT+GGG + chr1_2:57758149-57758168 Msa0079770:three_prime_UTR 50.0%
ACCCAATTTCCTGATGGGGT+GGG - chr1_2:57758153-57758172 None:intergenic 50.0%
CGCAACACCCAATTTCCTGA+TGG - chr1_2:57758159-57758178 None:intergenic 50.0%
! GGAAATTGGGTGTTGCGGAT+AGG + chr1_2:57758162-57758181 Msa0079770:three_prime_UTR 50.0%
GGGAGCTATGGCCATGTTTA+TGG + chr1_2:57758209-57758228 Msa0079770:three_prime_UTR 50.0%
! CCCACTGATTGGCCATCAAA+AGG - chr1_2:57758319-57758338 None:intergenic 50.0%
ACGTCCATTGCCAAACAAGG+AGG - chr1_2:57758528-57758547 None:intergenic 50.0%
CTTCCTATGCCACACAAGGT+TGG + chr1_2:57758645-57758664 Msa0079770:three_prime_UTR 50.0%
!! ATGGTTGGTGATAGCTCGGG+CGG + chr1_2:57757483-57757502 Msa0079770:CDS 55.0%
!! GACTCTGGGATTCCGGTGTT+GGG + chr1_2:57757540-57757559 Msa0079770:CDS 55.0%
TTTCTCGAGCAAGCCACGGT+TGG + chr1_2:57757861-57757880 Msa0079770:CDS 55.0%
TTCTCGAGCAAGCCACGGTT+GGG + chr1_2:57757862-57757881 Msa0079770:CDS 55.0%
CACCCACCCCATCAGGAAAT+TGG + chr1_2:57758148-57758167 Msa0079770:three_prime_UTR 55.0%
CACCCAATTTCCTGATGGGG+TGG - chr1_2:57758154-57758173 None:intergenic 55.0%
! GGGTGTTGCGGATAGGTGAA+AGG + chr1_2:57758169-57758188 Msa0079770:three_prime_UTR 55.0%
GGGTCTTCCTATGCCACACA+AGG + chr1_2:57758641-57758660 Msa0079770:three_prime_UTR 55.0%
!! TGGTTGGTGATAGCTCGGGC+GGG + chr1_2:57757484-57757503 Msa0079770:CDS 60.0%
!! GGACTCTGGGATTCCGGTGT+TGG + chr1_2:57757539-57757558 Msa0079770:CDS 60.0%
CAAGGGCAAGCCCCACTGAT+TGG - chr1_2:57758330-57758349 None:intergenic 60.0%
CAGTGGGGCTTGCCCTTGTA+TGG + chr1_2:57758332-57758351 Msa0079770:three_prime_UTR 60.0%
! TCTGGAGCACCCACCCCATC+AGG + chr1_2:57758141-57758160 Msa0079770:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 57756110 57758737 57756110 ID=Msa0079770;Name=Msa0079770
chr1_2 mRNA 57756110 57758737 57756110 ID=Msa0079770-mRNA-1;Parent=Msa0079770;Name=Msa0079770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=247|1|1|1|1|1|2|772|345
chr1_2 exon 57756110 57756395 57756110 ID=Msa0079770-mRNA-1:exon:18331;Parent=Msa0079770-mRNA-1
chr1_2 exon 57756967 57758737 57756967 ID=Msa0079770-mRNA-1:exon:18332;Parent=Msa0079770-mRNA-1
chr1_2 five_prime_UTR 57756110 57756356 57756110 ID=Msa0079770-mRNA-1:five_prime_utr;Parent=Msa0079770-mRNA-1
chr1_2 CDS 57756357 57756395 57756357 ID=Msa0079770-mRNA-1:cds;Parent=Msa0079770-mRNA-1
chr1_2 CDS 57756967 57757965 57756967 ID=Msa0079770-mRNA-1:cds;Parent=Msa0079770-mRNA-1
chr1_2 three_prime_UTR 57757966 57758737 57757966 ID=Msa0079770-mRNA-1:three_prime_utr;Parent=Msa0079770-mRNA-1
Gene Sequence

>Msa0079770

ATGGCTGGAAGTAACCAACTCAACCCCAATGATTCAAAGATGGTGGTTCCATTGAACATGTGGGTTTTGATCTCCAATTTCAAGTTAGCATACAATCTTCTCCGTCGTCCTGATGGAACTTTCAACCGTGACTTGGCAGAGTTTCTTGATCGGAAAGTTCCAGCAAATGCGAATCCTGTGGATGGTGTTTTCTCTTTTGATGTTATTGTTGATCGGGAAACCAATCTCCTTACTCGAATCTACCGTCCTGTTGAGGGAGAAGAACAACATGTGAACATTGTTGACCTTGAGAAGCCTGTTACTGCTGAGGTTCTTCCTGTTGTCATGTTCTTCCACGGTGGAAGTTTTGCACATTCTTCGGCTAACAGTGCTATTTATGATACATTGTGTCGTCGATTGGTTGGTATTTGTAATGCTGTTGTCGTCTCGGTGAATTATAGGCGTGCGCCTGAAAATAGGTATCCTTGCGCTTATGAAGATGGGTGGAAAGCTGTTAAATGGGTTAACTCTAGAACTTGGCTGCAGAGTAAAAAAGATAGCAAGGTTCATATCTACATGGTTGGTGATAGCTCGGGCGGGAACATTGTGCACCATGTTGCATTGAAAGCATTGGACTCTGGGATTCCGGTGTTGGGAAATATACTGCTAAACCCTTTGTTTGGCGGGGAAGAAAGAACAGAATCCGAAAAGCGTCTTGATGGGAGATATTTTGTCAGAGTGAAAGATAGAGACTGGTATTGGAGAGCTTTTCTTCCTGAAGGGGAAGACAGAGATCATCACGCGTGTAACCCTTTTGGTCCAAAAGGTCGAAGCCTTGATGGGGTTGCCTTTCCTAAGAGTCTTGTGGTGGTTGCTGGTTTGGATCTTGTTCAGGATTGGCAATTGGGATATGCCAAAGGACTTGAGAAAGCTGGACAAAATGTGAAGTTGCTATTTCTCGAGCAAGCCACGGTTGGGTTTTACTTGCTACCAAATAATGAGCATTTCTCTGTTGTCATGGATGAGATAAAACATTTTGTCAACTCTGACTGTTCATAG

Protein sequence

>Msa0079770

MAGSNQLNPNDSKMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDGVFSFDVIVDRETNLLTRIYRPVEGEEQHVNIVDLEKPVTAEVLPVVMFFHGGSFAHSSANSAIYDTLCRRLVGICNAVVVSVNYRRAPENRYPCAYEDGWKAVKWVNSRTWLQSKKDSKVHIYMVGDSSGGNIVHHVALKALDSGIPVLGNILLNPLFGGEERTESEKRLDGRYFVRVKDRDWYWRAFLPEGEDRDHHACNPFGPKGRSLDGVAFPKSLVVVAGLDLVQDWQLGYAKGLEKAGQNVKLLFLEQATVGFYLLPNNEHFSVVMDEIKHFVNSDCS*