AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1267560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267560 MtrunA17_Chr4g0047041 96.711 304 9 1 1 304 1 303 0.0 595
Msa1267560 MtrunA17_Chr1g0161301 32.727 165 94 4 148 304 89 244 3.08e-16 77.4
Msa1267560 MtrunA17_Chr8g0384281 30.065 153 107 0 144 296 341 493 7.84e-16 77.8
Msa1267560 MtrunA17_Chr8g0391761 33.333 141 77 4 172 304 20 151 7.26e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267560 AT2G33800.1 70.943 265 69 3 45 304 42 303 1.40e-129 371
Msa1267560 AT1G64880.1 33.553 152 101 0 145 296 355 506 1.51e-18 86.3
Msa1267560 AT2G41840.1 31.515 165 96 3 148 304 96 251 5.87e-16 77.0
Msa1267560 AT1G58380.1 31.515 165 96 3 148 304 95 250 6.91e-16 76.6
Msa1267560 AT1G58684.1 31.515 165 96 3 148 304 95 250 9.54e-16 76.3
Msa1267560 AT1G59359.1 31.515 165 96 3 148 304 95 250 9.54e-16 76.3
Msa1267560 AT1G58983.1 31.515 165 96 3 148 304 95 250 9.54e-16 76.3
Msa1267560 AT3G57490.1 30.303 165 98 3 148 304 87 242 1.15e-15 75.9

Find 127 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGAGCTGATGGAGATTA+TGG 0.212582 8_2:+72885279 Msa1267560:intron
AACTGTTGTTGTAAGTTTCT+TGG 0.251746 8_2:+72885615 Msa1267560:three_prime_UTR
TGTCAAAACCAAGCATAAAT+TGG 0.252159 8_2:-72885717 None:intergenic
GAGGGAAACAAATGAGGTTT+AGG 0.287989 8_2:+72883960 Msa1267560:CDS
GAATGTGAGTTTGTGGGTTG+TGG 0.290893 8_2:-72883561 None:intergenic
GGAGAGAGAGAATGGGGTTT+TGG 0.295722 8_2:-72883591 None:intergenic
TTGAAGGGAAGGTCTTCTTC+TGG 0.304660 8_2:-72883671 None:intergenic
TTCGACTGGACCGTCGTCTA+TGG 0.308957 8_2:-72883732 None:intergenic
ATGAAGCCTTCCGGGATTTC+CGG 0.310489 8_2:-72883698 None:intergenic
CGGGATTTCCGGTGGGTTGA+AGG 0.323166 8_2:-72883687 None:intergenic
AAGGATACCGGGTTCGGTTC+GGG 0.333237 8_2:+72883860 Msa1267560:CDS
GAGAGAGTGGAGAGAGAGAA+TGG 0.337375 8_2:-72883599 None:intergenic
GAAGGATACCGGGTTCGGTT+CGG 0.346246 8_2:+72883859 Msa1267560:CDS
GCAAGTGAAGAATGTGATTC+AGG 0.347348 8_2:-72885670 None:intergenic
GGATCCCTATGGAAGAATTA+TGG 0.351460 8_2:+72885505 Msa1267560:CDS
TGAAGGGAAGGTCTTCTTCT+GGG 0.352947 8_2:-72883670 None:intergenic
AATGTGAGTTTGTGGGTTGT+GGG 0.361016 8_2:-72883560 None:intergenic
CCTGGTACCGGAGTTATTGC+AGG 0.364105 8_2:+72885333 Msa1267560:CDS
CATCTTCATATCTTCAATAA+TGG 0.374714 8_2:+72883451 Msa1267560:exon
GTGGTGGAATGAAGCCTTCC+GGG 0.382928 8_2:-72883706 None:intergenic
AGAGAAACAAGAGGAGGAGG+AGG 0.387274 8_2:-72883531 None:intergenic
GCCGGTGTTGAGAATGCTTT+GGG 0.389280 8_2:+72885384 Msa1267560:CDS
AGGGTAACTAAGGTTGTTAA+AGG 0.390142 8_2:+72883938 Msa1267560:CDS
TTTAGGGCTATTGTTGTTGT+TGG 0.390533 8_2:+72883977 Msa1267560:CDS
AGAGAGTGGAGAGAGAGAAT+GGG 0.393555 8_2:-72883598 None:intergenic
CACTGCAGCTACAGTTGCTC+TGG 0.409585 8_2:-72885442 None:intergenic
GAGAGAGAAACAAGAGGAGG+AGG 0.418200 8_2:-72883534 None:intergenic
AGTGAGAATTGTTCTTGAAA+TGG 0.420916 8_2:+72885362 Msa1267560:CDS
GGTGGTGGAATGAAGCCTTC+CGG 0.420960 8_2:-72883707 None:intergenic
ACAAGAGGAGGAGGAGGAAG+AGG 0.428653 8_2:-72883525 None:intergenic
GGAAAAGATAAGAGATGGGT+TGG 0.430497 8_2:+72883892 Msa1267560:CDS
AGAGAATTGAGAGCGGAAGA+AGG 0.444378 8_2:-72883482 None:intergenic
AGGGAAACAAATGAGGTTTA+GGG 0.444508 8_2:+72883961 Msa1267560:CDS
TGAGAGGGAATGTGAGTTTG+TGG 0.452351 8_2:-72883568 None:intergenic
ATGCTTAGACCCGCTTCTCC+TGG 0.460234 8_2:+72885315 Msa1267560:CDS
ACACGACATATTCTTAAAAG+AGG 0.462224 8_2:-72885824 None:intergenic
ATTAGAATTAATTACCTATG+AGG 0.463119 8_2:-72884127 None:intergenic
ATTTCATCTTCGTCTTCGAC+TGG 0.464676 8_2:-72883746 None:intergenic
GGCCGGTGTTGAGAATGCTT+TGG 0.464816 8_2:+72885383 Msa1267560:CDS
ATGATTATCCAATTTATGCT+TGG 0.464856 8_2:+72885709 Msa1267560:three_prime_UTR
AAGAAGGAAAAGATAAGAGA+TGG 0.465607 8_2:+72883887 Msa1267560:CDS
GGTAAGGATTGTAAGGAACT+TGG 0.467696 8_2:+72885892 Msa1267560:three_prime_UTR
TTTCCGGTGGGTTGAAGGGA+AGG 0.470346 8_2:-72883682 None:intergenic
TACAGTGGTGTTAGTGTGCT+TGG 0.475022 8_2:+72883803 Msa1267560:CDS
GACGAGTTGGTGTTGGTGTT+GGG 0.477749 8_2:+72884011 Msa1267560:CDS
GCGAGGAAGGATACCGGGTT+CGG 0.479438 8_2:+72883854 Msa1267560:CDS
AAGAGTTGTTCAAGTGAGGA+GGG 0.483572 8_2:+72883919 Msa1267560:CDS
TCAAGTGAGGAGGGTAACTA+AGG 0.484987 8_2:+72883928 Msa1267560:CDS
GTTCGGTTCGGGTGCGAAGA+AGG 0.486778 8_2:+72883871 Msa1267560:CDS
GAGAGGGAATGTGAGTTTGT+GGG 0.488658 8_2:-72883567 None:intergenic
GGACGAGTTGGTGTTGGTGT+TGG 0.490278 8_2:+72884010 Msa1267560:CDS
AAGAAACTTACAACAACAGT+TGG 0.491410 8_2:-72885613 None:intergenic
GTTGTCTAATTCATCGGAGG+TGG 0.507188 8_2:-72883642 None:intergenic
GGGAAGGTCTTCTTCTGGGA+TGG 0.507275 8_2:-72883666 None:intergenic
CAATCATTGTGATGTAGAAC+TGG 0.509337 8_2:+72885568 Msa1267560:three_prime_UTR
GGAGGTGGGAATTGCTTTGA+CGG 0.509753 8_2:-72883627 None:intergenic
CTTCAACCCACCGGAAATCC+CGG 0.509862 8_2:+72883688 Msa1267560:CDS
GCCGCATACGAAGAGCTATA+CGG 0.511899 8_2:+72883773 Msa1267560:CDS
GAGAGTGGAGAGAGAGAATG+GGG 0.512697 8_2:-72883597 None:intergenic
AAAGAGTTGTTCAAGTGAGG+AGG 0.515860 8_2:+72883918 Msa1267560:CDS
AAGACGGCGAGGAAGGATAC+CGG 0.519140 8_2:+72883848 Msa1267560:CDS
TACTTCCATAATTCTTCCAT+AGG 0.523427 8_2:-72885510 None:intergenic
AGAAGGAAAAGATAAGAGAT+GGG 0.524914 8_2:+72883888 Msa1267560:CDS
TTAAAGGAGGGAAACAAATG+AGG 0.524916 8_2:+72883954 Msa1267560:CDS
AAGAAAGAGTTGTTCAAGTG+AGG 0.526597 8_2:+72883915 Msa1267560:CDS
CTTCGCACCCGAACCGAACC+CGG 0.526945 8_2:-72883867 None:intergenic
AAGCCTTCCGGGATTTCCGG+TGG 0.529062 8_2:-72883695 None:intergenic
ATGTGAGTTTGTGGGTTGTG+GGG 0.529517 8_2:-72883559 None:intergenic
GGGAATTGCTTTGACGGTGA+AGG 0.529826 8_2:-72883621 None:intergenic
GGGATTTCCGGTGGGTTGAA+GGG 0.530494 8_2:-72883686 None:intergenic
AAAAGTCAAGTACTTGGTCA+TGG 0.539176 8_2:-72884104 None:intergenic
GTAACTAAGGTTGTTAAAGG+AGG 0.540545 8_2:+72883941 Msa1267560:CDS
AGAAATCTGCTATTAATGCT+AGG 0.542732 8_2:+72884062 Msa1267560:CDS
GATGGTGTTGTCTAATTCAT+CGG 0.546443 8_2:-72883648 None:intergenic
CCGTCGTCTATGGAAGGTGG+TGG 0.551471 8_2:-72883722 None:intergenic
AATGCTTTGGGGAAACAACT+AGG 0.554037 8_2:+72885396 Msa1267560:CDS
TGAGTTTGTGGGTTGTGGGG+AGG 0.554542 8_2:-72883556 None:intergenic
ATGAGGAAAAGTCAAGTACT+TGG 0.555126 8_2:-72884110 None:intergenic
GATGGATAAGACGGCGAGGA+AGG 0.559767 8_2:+72883841 Msa1267560:CDS
TGGAAATGATATAAATGTGA+TGG 0.562907 8_2:+72883823 Msa1267560:CDS
CCTGCAATAACTCCGGTACC+AGG 0.564590 8_2:-72885333 None:intergenic
TGAGGAGCGTGGGATCCCTA+TGG 0.565454 8_2:+72885494 Msa1267560:CDS
ACTTCCATAATTCTTCCATA+GGG 0.566653 8_2:-72885509 None:intergenic
TGGAGATTATGGAGCGTCAA+AGG 0.569341 8_2:+72885290 Msa1267560:CDS
ACTCCGGTACCAGGAGAAGC+GGG 0.569424 8_2:-72885324 None:intergenic
TAACTAAGGTTGTTAAAGGA+GGG 0.570136 8_2:+72883942 Msa1267560:CDS
AGTGAGGTCGCTGAGGAGCG+TGG 0.573201 8_2:+72885483 Msa1267560:CDS
AGACCCGCTTCTCCTGGTAC+CGG 0.574190 8_2:+72885321 Msa1267560:CDS
GGTACCGGAGTTATTGCAGG+TGG 0.578070 8_2:+72885336 Msa1267560:CDS
AAAGTCAAGTACTTGGTCAT+GGG 0.581671 8_2:-72884103 None:intergenic
AACTCCGGTACCAGGAGAAG+CGG 0.582114 8_2:-72885325 None:intergenic
AACAGTTGGAACACTTTCTG+AGG 0.587078 8_2:-72885599 None:intergenic
GTGAGGTCGCTGAGGAGCGT+GGG 0.589602 8_2:+72885484 Msa1267560:CDS
AGAAGAGAGAGAATTGAGAG+CGG 0.592656 8_2:-72883489 None:intergenic
GGGGAGGAGAGAGAAACAAG+AGG 0.595007 8_2:-72883540 None:intergenic
CCCCAAAGCATTCTCAACAC+CGG 0.599175 8_2:-72885385 None:intergenic
AGAATTGTTCTTGAAATGGC+CGG 0.602212 8_2:+72885366 Msa1267560:CDS
AGCCTTCCGGGATTTCCGGT+GGG 0.602553 8_2:-72883694 None:intergenic
AGACGGCGAGGAAGGATACC+GGG 0.603653 8_2:+72883849 Msa1267560:CDS
AGGAGGAGGAGGAAGAGGAA+CGG 0.604334 8_2:-72883520 None:intergenic
ACTGGACCGTCGTCTATGGA+AGG 0.605529 8_2:-72883728 None:intergenic
TATAAATGTGATGGATAAGA+CGG 0.605582 8_2:+72883832 Msa1267560:CDS
GAGGAGAGAGAAACAAGAGG+AGG 0.611257 8_2:-72883537 None:intergenic
TTGACGTATGAAAATCACAT+TGG 0.614187 8_2:-72885548 None:intergenic
AGACCTTCCCTTCAACCCAC+CGG 0.615775 8_2:+72883679 Msa1267560:CDS
GCAGTACAGTGAGGTCGCTG+AGG 0.616630 8_2:+72885476 Msa1267560:CDS
GTTGTTGTTGGTGATAAGCA+AGG 0.618084 8_2:+72883989 Msa1267560:CDS
TTGTCTAATTCATCGGAGGT+GGG 0.621444 8_2:-72883641 None:intergenic
TGACCCACCTGCAATAACTC+CGG 0.632629 8_2:-72885340 None:intergenic
AAGCAAGGACGAGTTGGTGT+TGG 0.635148 8_2:+72884004 Msa1267560:CDS
GGTGATAAGCAAGGACGAGT+TGG 0.638537 8_2:+72883998 Msa1267560:CDS
TGTTGGTGTTGGGAAAGCTA+AGG 0.639378 8_2:+72884021 Msa1267560:CDS
ACCGTATAGCTCTTCGTATG+CGG 0.640746 8_2:-72883774 None:intergenic
AACCCACCGGAAATCCCGGA+AGG 0.651503 8_2:+72883692 Msa1267560:CDS
GGACCGTCGTCTATGGAAGG+TGG 0.656325 8_2:-72883725 None:intergenic
AATCTGCTATTAATGCTAGG+AGG 0.657188 8_2:+72884065 Msa1267560:CDS
TTTGACGGTGAAGGAGAGAG+TGG 0.659844 8_2:-72883612 None:intergenic
CTATACGGTGTGGCGTACAG+TGG 0.669321 8_2:+72883788 Msa1267560:CDS
TGATGATGTTTCACTATGAG+AGG 0.670140 8_2:-72883427 None:intergenic
GGTGTTGTCTAATTCATCGG+AGG 0.675048 8_2:-72883645 None:intergenic
GAAAATGAAGCAGTACAGTG+AGG 0.690707 8_2:+72885467 Msa1267560:CDS
GTATAGCTCTTCGTATGCGG+CGG 0.690747 8_2:-72883771 None:intergenic
GTACCGGAGTTATTGCAGGT+GGG 0.698051 8_2:+72885337 Msa1267560:CDS
ATGTGATGGATAAGACGGCG+AGG 0.709872 8_2:+72883837 Msa1267560:CDS
CCACCACCTTCCATAGACGA+CGG 0.718416 8_2:+72883722 Msa1267560:CDS
ATACGAAGAGCTATACGGTG+TGG 0.743299 8_2:+72883778 Msa1267560:CDS
CCGGTGTTGAGAATGCTTTG+GGG 0.778015 8_2:+72885385 Msa1267560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCAAATGACATTATAAT+TGG - chr8_2:72884248-72884267 None:intergenic 15.0%
!!! AATTATAATGTCATTTGAAA+TGG + chr8_2:72884247-72884266 Msa1267560:intron 15.0%
!! TATATACAACATAAAATTAG+TGG - chr8_2:72885252-72885271 None:intergenic 15.0%
!! AATTTAAAAGCAAAAATACA+AGG - chr8_2:72885759-72885778 None:intergenic 15.0%
!! ATTAGAATTAATTACCTATG+AGG - chr8_2:72884130-72884149 None:intergenic 20.0%
!! AAGTTATGGATGAAAAAATT+AGG + chr8_2:72884338-72884357 Msa1267560:intron 20.0%
!! TTAGTCATTATTAGTATTGT+TGG + chr8_2:72884387-72884406 Msa1267560:intron 20.0%
!! AACAATTTCATTGTTCTATT+GGG - chr8_2:72884495-72884514 None:intergenic 20.0%
!! ATGAGAAACAAATATGAAAT+AGG + chr8_2:72884770-72884789 Msa1267560:intron 20.0%
!!! CATTGTTTGATTTGAAAAAT+TGG + chr8_2:72885871-72885890 Msa1267560:three_prime_UTR 20.0%
!!! TTTGATTTGAAAAATTGGTA+AGG + chr8_2:72885876-72885895 Msa1267560:three_prime_UTR 20.0%
! CATCTTCATATCTTCAATAA+TGG + chr8_2:72883451-72883470 Msa1267560:exon 25.0%
! TGGAAATGATATAAATGTGA+TGG + chr8_2:72883823-72883842 Msa1267560:CDS 25.0%
!!! TATAAATGTGATGGATAAGA+CGG + chr8_2:72883832-72883851 Msa1267560:CDS 25.0%
! AAAACAACAACTAGTAAGTA+GGG - chr8_2:72884204-72884223 None:intergenic 25.0%
! AAAACTTATTGACCAATGTT+GGG + chr8_2:72884270-72884289 Msa1267560:intron 25.0%
!!! GGTTTTGAATTTGAAAGTTA+TGG + chr8_2:72884324-72884343 Msa1267560:intron 25.0%
! TTATGGATGAAAAAATTAGG+TGG + chr8_2:72884341-72884360 Msa1267560:intron 25.0%
! GAACAATTTCATTGTTCTAT+TGG - chr8_2:72884496-72884515 None:intergenic 25.0%
! AAAAATCCACCATATAAGAA+GGG - chr8_2:72884633-72884652 None:intergenic 25.0%
! ACAATGTCATATTAATATGG+AGG - chr8_2:72884662-72884681 None:intergenic 25.0%
! TCCATATTAATATGACATTG+TGG + chr8_2:72884661-72884680 Msa1267560:intron 25.0%
!! CATTTTTACATAGAACATAC+AGG - chr8_2:72884753-72884772 None:intergenic 25.0%
!! ATATGAAATAGGTTGAAATG+TGG + chr8_2:72884781-72884800 Msa1267560:intron 25.0%
! TAGATTTCCTTAACTCAAAT+AGG + chr8_2:72885087-72885106 Msa1267560:intron 25.0%
!!! AGATGGAACTTTTATTTCAA+AGG + chr8_2:72885140-72885159 Msa1267560:intron 25.0%
! ATGATTATCCAATTTATGCT+TGG + chr8_2:72885709-72885728 Msa1267560:three_prime_UTR 25.0%
! AAAAATTGGTAAGGATTGTA+AGG + chr8_2:72885885-72885904 Msa1267560:three_prime_UTR 25.0%
! CTAACTAGAGATAAGGTTTT+TGG - chr8_2:72883346-72883365 None:intergenic 30.0%
GCAAAAACTAACTAGAGATA+AGG - chr8_2:72883353-72883372 None:intergenic 30.0%
AAGAAGGAAAAGATAAGAGA+TGG + chr8_2:72883887-72883906 Msa1267560:CDS 30.0%
AGAAGGAAAAGATAAGAGAT+GGG + chr8_2:72883888-72883907 Msa1267560:CDS 30.0%
TAACTAAGGTTGTTAAAGGA+GGG + chr8_2:72883942-72883961 Msa1267560:CDS 30.0%
AGAAATCTGCTATTAATGCT+AGG + chr8_2:72884062-72884081 Msa1267560:CDS 30.0%
CAAAACAACAACTAGTAAGT+AGG - chr8_2:72884205-72884224 None:intergenic 30.0%
GAAAACTTATTGACCAATGT+TGG + chr8_2:72884269-72884288 Msa1267560:intron 30.0%
!! TTAGTATTGTTGGTGACATA+TGG + chr8_2:72884397-72884416 Msa1267560:intron 30.0%
TTCATTGTTCTATTGGGAAT+AGG - chr8_2:72884489-72884508 None:intergenic 30.0%
AATAGAAACAAGCAAAGGTA+AGG - chr8_2:72884518-72884537 None:intergenic 30.0%
AACTCAATAGAAACAAGCAA+AGG - chr8_2:72884523-72884542 None:intergenic 30.0%
ACAATGTTAAGAACACAAGA+AGG - chr8_2:72884555-72884574 None:intergenic 30.0%
CAAAAATCCACCATATAAGA+AGG - chr8_2:72884634-72884653 None:intergenic 30.0%
!!! TTATATGGTGGATTTTTGTC+TGG + chr8_2:72884636-72884655 Msa1267560:intron 30.0%
GCCACAATGTCATATTAATA+TGG - chr8_2:72884665-72884684 None:intergenic 30.0%
! TTAGCATCGTAAGATTTTAC+TGG + chr8_2:72884819-72884838 Msa1267560:intron 30.0%
! GAATATAAAGCATCTGATTG+AGG + chr8_2:72884900-72884919 Msa1267560:intron 30.0%
ATGAATGCCTAAGTAACTTA+TGG + chr8_2:72885032-72885051 Msa1267560:intron 30.0%
TAAGTGACCATAAGTTACTT+AGG - chr8_2:72885042-72885061 None:intergenic 30.0%
TGAGTTAAGGAAATCTAACA+GGG - chr8_2:72885084-72885103 None:intergenic 30.0%
TTGAGTTAAGGAAATCTAAC+AGG - chr8_2:72885085-72885104 None:intergenic 30.0%
! TTCAGTTCCTATTTGAGTTA+AGG - chr8_2:72885097-72885116 None:intergenic 30.0%
AGTGAGAATTGTTCTTGAAA+TGG + chr8_2:72885362-72885381 Msa1267560:CDS 30.0%
ACTTCCATAATTCTTCCATA+GGG - chr8_2:72885512-72885531 None:intergenic 30.0%
TACTTCCATAATTCTTCCAT+AGG - chr8_2:72885513-72885532 None:intergenic 30.0%
TTGACGTATGAAAATCACAT+TGG - chr8_2:72885551-72885570 None:intergenic 30.0%
AAGAAACTTACAACAACAGT+TGG - chr8_2:72885616-72885635 None:intergenic 30.0%
AACTGTTGTTGTAAGTTTCT+TGG + chr8_2:72885615-72885634 Msa1267560:three_prime_UTR 30.0%
TGTCAAAACCAAGCATAAAT+TGG - chr8_2:72885720-72885739 None:intergenic 30.0%
ACACGACATATTCTTAAAAG+AGG - chr8_2:72885827-72885846 None:intergenic 30.0%
!! TCTTTTAAGAATATGTCGTG+TGG + chr8_2:72885826-72885845 Msa1267560:three_prime_UTR 30.0%
! TGATGATGTTTCACTATGAG+AGG - chr8_2:72883430-72883449 None:intergenic 35.0%
!! GATGGTGTTGTCTAATTCAT+CGG - chr8_2:72883651-72883670 None:intergenic 35.0%
AAGAAAGAGTTGTTCAAGTG+AGG + chr8_2:72883915-72883934 Msa1267560:CDS 35.0%
AGGGTAACTAAGGTTGTTAA+AGG + chr8_2:72883938-72883957 Msa1267560:CDS 35.0%
GTAACTAAGGTTGTTAAAGG+AGG + chr8_2:72883941-72883960 Msa1267560:CDS 35.0%
TTAAAGGAGGGAAACAAATG+AGG + chr8_2:72883954-72883973 Msa1267560:CDS 35.0%
AGGGAAACAAATGAGGTTTA+GGG + chr8_2:72883961-72883980 Msa1267560:CDS 35.0%
! TTTAGGGCTATTGTTGTTGT+TGG + chr8_2:72883977-72883996 Msa1267560:CDS 35.0%
AATCTGCTATTAATGCTAGG+AGG + chr8_2:72884065-72884084 Msa1267560:CDS 35.0%
AAAGTCAAGTACTTGGTCAT+GGG - chr8_2:72884106-72884125 None:intergenic 35.0%
AAAAGTCAAGTACTTGGTCA+TGG - chr8_2:72884107-72884126 None:intergenic 35.0%
ATGAGGAAAAGTCAAGTACT+TGG - chr8_2:72884113-72884132 None:intergenic 35.0%
! AGTACTTGACTTTTCCTCAT+AGG + chr8_2:72884113-72884132 Msa1267560:CDS 35.0%
GCATGATAGTCGAAAGTAAA+GGG + chr8_2:72884419-72884438 Msa1267560:intron 35.0%
ATAGTCGAAAGTAAAGGGAA+AGG + chr8_2:72884424-72884443 Msa1267560:intron 35.0%
AAAGGGAAAGGTTATTGTGA+AGG + chr8_2:72884436-72884455 Msa1267560:intron 35.0%
AAGGGAAAGGTTATTGTGAA+GGG + chr8_2:72884437-72884456 Msa1267560:intron 35.0%
! TAGTCACACACAAAGTATCA+AGG - chr8_2:72884579-72884598 None:intergenic 35.0%
CTTACGATGCTAATAGCATA+TGG - chr8_2:72884812-72884831 None:intergenic 35.0%
TCCATCAAATGCTCAAATGA+AGG - chr8_2:72884845-72884864 None:intergenic 35.0%
AGATGCTTTATATTCAGCTC+TGG - chr8_2:72884895-72884914 None:intergenic 35.0%
TGCGATAAGCATTCACATAT+GGG - chr8_2:72884993-72885012 None:intergenic 35.0%
CTAACAGGGAACATCTTAAT+AGG - chr8_2:72885070-72885089 None:intergenic 35.0%
! TAATGTTTTTCCAGAGCTGA+TGG + chr8_2:72885270-72885289 Msa1267560:intron 35.0%
AGAATTGTTCTTGAAATGGC+CGG + chr8_2:72885366-72885385 Msa1267560:CDS 35.0%
CAATCATTGTGATGTAGAAC+TGG + chr8_2:72885568-72885587 Msa1267560:three_prime_UTR 35.0%
AGAAGAGAGAGAATTGAGAG+CGG - chr8_2:72883492-72883511 None:intergenic 40.0%
! AATGTGAGTTTGTGGGTTGT+GGG - chr8_2:72883563-72883582 None:intergenic 40.0%
TTGTCTAATTCATCGGAGGT+GGG - chr8_2:72883644-72883663 None:intergenic 40.0%
ATTTCATCTTCGTCTTCGAC+TGG - chr8_2:72883749-72883768 None:intergenic 40.0%
GGAAAAGATAAGAGATGGGT+TGG + chr8_2:72883892-72883911 Msa1267560:CDS 40.0%
AAAGAGTTGTTCAAGTGAGG+AGG + chr8_2:72883918-72883937 Msa1267560:CDS 40.0%
AAGAGTTGTTCAAGTGAGGA+GGG + chr8_2:72883919-72883938 Msa1267560:CDS 40.0%
GAGGGAAACAAATGAGGTTT+AGG + chr8_2:72883960-72883979 Msa1267560:CDS 40.0%
!! GTTGTTGTTGGTGATAAGCA+AGG + chr8_2:72883989-72884008 Msa1267560:CDS 40.0%
TCGGCTACACAGATCAAATT+AGG - chr8_2:72884181-72884200 None:intergenic 40.0%
CAACAACTAGTAAGTAGGGT+CGG - chr8_2:72884200-72884219 None:intergenic 40.0%
CTTATTGACCAATGTTGGGT+TGG + chr8_2:72884274-72884293 Msa1267560:intron 40.0%
GGCATGATAGTCGAAAGTAA+AGG + chr8_2:72884418-72884437 Msa1267560:intron 40.0%
AGGGAAAGGTTATTGTGAAG+GGG + chr8_2:72884438-72884457 Msa1267560:intron 40.0%
TATTGTGAAGGGGAAATCCT+TGG + chr8_2:72884448-72884467 Msa1267560:intron 40.0%
!! ACCATATAAGAAGGGCATTG+CGG - chr8_2:72884625-72884644 None:intergenic 40.0%
TGACATTGTGGCCTATATAG+TGG + chr8_2:72884673-72884692 Msa1267560:intron 40.0%
CAACGCAGATTCCACTATAT+AGG - chr8_2:72884687-72884706 None:intergenic 40.0%
! ATATAGTGGAATCTGCGTTG+TGG + chr8_2:72884687-72884706 Msa1267560:intron 40.0%
GCCTTCATTTGAGCATTTGA+TGG + chr8_2:72884841-72884860 Msa1267560:intron 40.0%
CATCTGATTGAGGTTGTAGT+TGG + chr8_2:72884910-72884929 Msa1267560:intron 40.0%
CTGCGATAAGCATTCACATA+TGG - chr8_2:72884994-72885013 None:intergenic 40.0%
AATGCTTATCGCAGCTGAAA+GGG + chr8_2:72885000-72885019 Msa1267560:intron 40.0%
TTCTAGCATCTTAGAACACG+AGG - chr8_2:72885195-72885214 None:intergenic 40.0%
!! AATGCTTTGGGGAAACAACT+AGG + chr8_2:72885396-72885415 Msa1267560:CDS 40.0%
GAAAATGAAGCAGTACAGTG+AGG + chr8_2:72885467-72885486 Msa1267560:CDS 40.0%
GGATCCCTATGGAAGAATTA+TGG + chr8_2:72885505-72885524 Msa1267560:CDS 40.0%
AACAGTTGGAACACTTTCTG+AGG - chr8_2:72885602-72885621 None:intergenic 40.0%
GCAAGTGAAGAATGTGATTC+AGG - chr8_2:72885673-72885692 None:intergenic 40.0%
GGTAAGGATTGTAAGGAACT+TGG + chr8_2:72885892-72885911 Msa1267560:three_prime_UTR 40.0%
AGAGAATTGAGAGCGGAAGA+AGG - chr8_2:72883485-72883504 None:intergenic 45.0%
! ATGTGAGTTTGTGGGTTGTG+GGG - chr8_2:72883562-72883581 None:intergenic 45.0%
! GAATGTGAGTTTGTGGGTTG+TGG - chr8_2:72883564-72883583 None:intergenic 45.0%
GAGAGGGAATGTGAGTTTGT+GGG - chr8_2:72883570-72883589 None:intergenic 45.0%
TGAGAGGGAATGTGAGTTTG+TGG - chr8_2:72883571-72883590 None:intergenic 45.0%
!! AGAATGGGGTTTTGGTGAGA+GGG - chr8_2:72883586-72883605 None:intergenic 45.0%
AGAGAGTGGAGAGAGAGAAT+GGG - chr8_2:72883601-72883620 None:intergenic 45.0%
GTTGTCTAATTCATCGGAGG+TGG - chr8_2:72883645-72883664 None:intergenic 45.0%
! GGTGTTGTCTAATTCATCGG+AGG - chr8_2:72883648-72883667 None:intergenic 45.0%
TGAAGGGAAGGTCTTCTTCT+GGG - chr8_2:72883673-72883692 None:intergenic 45.0%
TTGAAGGGAAGGTCTTCTTC+TGG - chr8_2:72883674-72883693 None:intergenic 45.0%
ACCGTATAGCTCTTCGTATG+CGG - chr8_2:72883777-72883796 None:intergenic 45.0%
ATACGAAGAGCTATACGGTG+TGG + chr8_2:72883778-72883797 Msa1267560:CDS 45.0%
! TACAGTGGTGTTAGTGTGCT+TGG + chr8_2:72883803-72883822 Msa1267560:CDS 45.0%
TCAAGTGAGGAGGGTAACTA+AGG + chr8_2:72883928-72883947 Msa1267560:CDS 45.0%
!! TGTTGGTGTTGGGAAAGCTA+AGG + chr8_2:72884021-72884040 Msa1267560:CDS 45.0%
GGAGAAAGAATTCTCCACCA+AGG - chr8_2:72884468-72884487 None:intergenic 45.0%
TGTTTCCAACTTTCCGCTGT+AGG + chr8_2:72884599-72884618 Msa1267560:intron 45.0%
GCAATGCCCTTCTTATATGG+TGG + chr8_2:72884624-72884643 Msa1267560:intron 45.0%
GTATGCAGCGATCTATGGAA+GGG - chr8_2:72884960-72884979 None:intergenic 45.0%
AACACGTATGCAGCGATCTA+TGG - chr8_2:72884965-72884984 None:intergenic 45.0%
TAGATCGCTGCATACGTGTT+TGG + chr8_2:72884965-72884984 Msa1267560:intron 45.0%
GAATGCTTATCGCAGCTGAA+AGG + chr8_2:72884999-72885018 Msa1267560:intron 45.0%
AGTCTCTTCTTGCTGAGAGA+TGG + chr8_2:72885123-72885142 Msa1267560:intron 45.0%
TCCAGAGCTGATGGAGATTA+TGG + chr8_2:72885279-72885298 Msa1267560:intron 45.0%
TCCATAATCTCCATCAGCTC+TGG - chr8_2:72885283-72885302 None:intergenic 45.0%
! TGGAGATTATGGAGCGTCAA+AGG + chr8_2:72885290-72885309 Msa1267560:CDS 45.0%
AGAGAAACAAGAGGAGGAGG+AGG - chr8_2:72883534-72883553 None:intergenic 50.0%
GAGAGAGAAACAAGAGGAGG+AGG - chr8_2:72883537-72883556 None:intergenic 50.0%
GAGGAGAGAGAAACAAGAGG+AGG - chr8_2:72883540-72883559 None:intergenic 50.0%
!! GAGAATGGGGTTTTGGTGAG+AGG - chr8_2:72883587-72883606 None:intergenic 50.0%
! GGAGAGAGAGAATGGGGTTT+TGG - chr8_2:72883594-72883613 None:intergenic 50.0%
GAGAGTGGAGAGAGAGAATG+GGG - chr8_2:72883600-72883619 None:intergenic 50.0%
GAGAGAGTGGAGAGAGAGAA+TGG - chr8_2:72883602-72883621 None:intergenic 50.0%
TTTGACGGTGAAGGAGAGAG+TGG - chr8_2:72883615-72883634 None:intergenic 50.0%
GGGAATTGCTTTGACGGTGA+AGG - chr8_2:72883624-72883643 None:intergenic 50.0%
GGAGGTGGGAATTGCTTTGA+CGG - chr8_2:72883630-72883649 None:intergenic 50.0%
ATGAAGCCTTCCGGGATTTC+CGG - chr8_2:72883701-72883720 None:intergenic 50.0%
GTATAGCTCTTCGTATGCGG+CGG - chr8_2:72883774-72883793 None:intergenic 50.0%
GCCGCATACGAAGAGCTATA+CGG + chr8_2:72883773-72883792 Msa1267560:CDS 50.0%
!! ATGTGATGGATAAGACGGCG+AGG + chr8_2:72883837-72883856 Msa1267560:CDS 50.0%
GGTGATAAGCAAGGACGAGT+TGG + chr8_2:72883998-72884017 Msa1267560:CDS 50.0%
!! AAGCAAGGACGAGTTGGTGT+TGG + chr8_2:72884004-72884023 Msa1267560:CDS 50.0%
!! GACGAGTTGGTGTTGGTGTT+GGG + chr8_2:72884011-72884030 Msa1267560:CDS 50.0%
TGGAACGGGACTCTGATGTA+AGG + chr8_2:72884303-72884322 Msa1267560:intron 50.0%
TGTGAAGGGGAAATCCTTGG+TGG + chr8_2:72884451-72884470 Msa1267560:intron 50.0%
GCCGCAATGCCCTTCTTATA+TGG + chr8_2:72884621-72884640 Msa1267560:intron 50.0%
! TTCAGCTCTGGTATCCCTCA+GGG - chr8_2:72884883-72884902 None:intergenic 50.0%
! ATTCAGCTCTGGTATCCCTC+AGG - chr8_2:72884884-72884903 None:intergenic 50.0%
CGTATGCAGCGATCTATGGA+AGG - chr8_2:72884961-72884980 None:intergenic 50.0%
GTACCGGAGTTATTGCAGGT+GGG + chr8_2:72885337-72885356 Msa1267560:CDS 50.0%
TGACCCACCTGCAATAACTC+CGG - chr8_2:72885343-72885362 None:intergenic 50.0%
! GCCGGTGTTGAGAATGCTTT+GGG + chr8_2:72885384-72885403 Msa1267560:CDS 50.0%
! CCCCAAAGCATTCTCAACAC+CGG - chr8_2:72885388-72885407 None:intergenic 50.0%
! CCGGTGTTGAGAATGCTTTG+GGG + chr8_2:72885385-72885404 Msa1267560:CDS 50.0%
AGGAGGAGGAGGAAGAGGAA+CGG - chr8_2:72883523-72883542 None:intergenic 55.0%
ACAAGAGGAGGAGGAGGAAG+AGG - chr8_2:72883528-72883547 None:intergenic 55.0%
GGGGAGGAGAGAGAAACAAG+AGG - chr8_2:72883543-72883562 None:intergenic 55.0%
! TGAGTTTGTGGGTTGTGGGG+AGG - chr8_2:72883559-72883578 None:intergenic 55.0%
! GGGAAGGTCTTCTTCTGGGA+TGG - chr8_2:72883669-72883688 None:intergenic 55.0%
AGACCTTCCCTTCAACCCAC+CGG + chr8_2:72883679-72883698 Msa1267560:CDS 55.0%
!! TTTCCGGTGGGTTGAAGGGA+AGG - chr8_2:72883685-72883704 None:intergenic 55.0%
!! GGGATTTCCGGTGGGTTGAA+GGG - chr8_2:72883689-72883708 None:intergenic 55.0%
CTTCAACCCACCGGAAATCC+CGG + chr8_2:72883688-72883707 Msa1267560:CDS 55.0%
! GTGGTGGAATGAAGCCTTCC+GGG - chr8_2:72883709-72883728 None:intergenic 55.0%
!! GGTGGTGGAATGAAGCCTTC+CGG - chr8_2:72883710-72883729 None:intergenic 55.0%
CCACCACCTTCCATAGACGA+CGG + chr8_2:72883722-72883741 Msa1267560:CDS 55.0%
ACTGGACCGTCGTCTATGGA+AGG - chr8_2:72883731-72883750 None:intergenic 55.0%
TTCGACTGGACCGTCGTCTA+TGG - chr8_2:72883735-72883754 None:intergenic 55.0%
CTATACGGTGTGGCGTACAG+TGG + chr8_2:72883788-72883807 Msa1267560:CDS 55.0%
GATGGATAAGACGGCGAGGA+AGG + chr8_2:72883841-72883860 Msa1267560:CDS 55.0%
AAGACGGCGAGGAAGGATAC+CGG + chr8_2:72883848-72883867 Msa1267560:CDS 55.0%
! GAAGGATACCGGGTTCGGTT+CGG + chr8_2:72883859-72883878 Msa1267560:CDS 55.0%
! AAGGATACCGGGTTCGGTTC+GGG + chr8_2:72883860-72883879 Msa1267560:CDS 55.0%
!! GGACGAGTTGGTGTTGGTGT+TGG + chr8_2:72884010-72884029 Msa1267560:CDS 55.0%
CACTCGGACCAACCCAACAT+TGG - chr8_2:72884285-72884304 None:intergenic 55.0%
!! CAATGTTGGGTTGGTCCGAG+TGG + chr8_2:72884283-72884302 Msa1267560:intron 55.0%
!! TTGGGTTGGTCCGAGTGGAA+CGG + chr8_2:72884288-72884307 Msa1267560:intron 55.0%
CATCAGAGTCCCGTTCCACT+CGG - chr8_2:72884301-72884320 None:intergenic 55.0%
TTGAAGTCCCCTTCTCCCTG+AGG + chr8_2:72884865-72884884 Msa1267560:intron 55.0%
TGAAGTCCCCTTCTCCCTGA+GGG + chr8_2:72884866-72884885 Msa1267560:intron 55.0%
TGGTATCCCTCAGGGAGAAG+GGG - chr8_2:72884875-72884894 None:intergenic 55.0%
CTGGTATCCCTCAGGGAGAA+GGG - chr8_2:72884876-72884895 None:intergenic 55.0%
TCTGGTATCCCTCAGGGAGA+AGG - chr8_2:72884877-72884896 None:intergenic 55.0%
ATGCTTAGACCCGCTTCTCC+TGG + chr8_2:72885315-72885334 Msa1267560:CDS 55.0%
AACTCCGGTACCAGGAGAAG+CGG - chr8_2:72885328-72885347 None:intergenic 55.0%
CCTGCAATAACTCCGGTACC+AGG - chr8_2:72885336-72885355 None:intergenic 55.0%
! CCTGGTACCGGAGTTATTGC+AGG + chr8_2:72885333-72885352 Msa1267560:CDS 55.0%
! GGTACCGGAGTTATTGCAGG+TGG + chr8_2:72885336-72885355 Msa1267560:CDS 55.0%
! GGCCGGTGTTGAGAATGCTT+TGG + chr8_2:72885383-72885402 Msa1267560:CDS 55.0%
CACTGCAGCTACAGTTGCTC+TGG - chr8_2:72885445-72885464 None:intergenic 55.0%
!! CGGGATTTCCGGTGGGTTGA+AGG - chr8_2:72883690-72883709 None:intergenic 60.0%
AACCCACCGGAAATCCCGGA+AGG + chr8_2:72883692-72883711 Msa1267560:CDS 60.0%
AGCCTTCCGGGATTTCCGGT+GGG - chr8_2:72883697-72883716 None:intergenic 60.0%
AAGCCTTCCGGGATTTCCGG+TGG - chr8_2:72883698-72883717 None:intergenic 60.0%
CCGTCGTCTATGGAAGGTGG+TGG - chr8_2:72883725-72883744 None:intergenic 60.0%
GGACCGTCGTCTATGGAAGG+TGG - chr8_2:72883728-72883747 None:intergenic 60.0%
AGACGGCGAGGAAGGATACC+GGG + chr8_2:72883849-72883868 Msa1267560:CDS 60.0%
GCGAGGAAGGATACCGGGTT+CGG + chr8_2:72883854-72883873 Msa1267560:CDS 60.0%
!! GTTCGGTTCGGGTGCGAAGA+AGG + chr8_2:72883871-72883890 Msa1267560:CDS 60.0%
!! TGGGTTGGTCCGAGTGGAAC+GGG + chr8_2:72884289-72884308 Msa1267560:intron 60.0%
TGCGGCCTACAGCGGAAAGT+TGG - chr8_2:72884607-72884626 None:intergenic 60.0%
!! AAGGGCATTGCGGCCTACAG+CGG - chr8_2:72884615-72884634 None:intergenic 60.0%
AGACCCGCTTCTCCTGGTAC+CGG + chr8_2:72885321-72885340 Msa1267560:CDS 60.0%
ACTCCGGTACCAGGAGAAGC+GGG - chr8_2:72885327-72885346 None:intergenic 60.0%
GCAGTACAGTGAGGTCGCTG+AGG + chr8_2:72885476-72885495 Msa1267560:CDS 60.0%
! TGAGGAGCGTGGGATCCCTA+TGG + chr8_2:72885494-72885513 Msa1267560:CDS 60.0%
CTTCGCACCCGAACCGAACC+CGG - chr8_2:72883870-72883889 None:intergenic 65.0%
AGTGAGGTCGCTGAGGAGCG+TGG + chr8_2:72885483-72885502 Msa1267560:CDS 65.0%
! GTGAGGTCGCTGAGGAGCGT+GGG + chr8_2:72885484-72885503 Msa1267560:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 72883327 72885926 72883327 ID=Msa1267560;Name=Msa1267560
chr8_2 mRNA 72883327 72885926 72883327 ID=Msa1267560-mRNA-1;Parent=Msa1267560;Name=Msa1267560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=143|1|1|1|1|1|2|393|304
chr8_2 exon 72883327 72884134 72883327 ID=Msa1267560-mRNA-1:exon:24683;Parent=Msa1267560-mRNA-1
chr8_2 exon 72885284 72885926 72885284 ID=Msa1267560-mRNA-1:exon:24684;Parent=Msa1267560-mRNA-1
chr8_2 five_prime_UTR 72883327 72883469 72883327 ID=Msa1267560-mRNA-1:five_prime_utr;Parent=Msa1267560-mRNA-1
chr8_2 CDS 72883470 72884134 72883470 ID=Msa1267560-mRNA-1:cds;Parent=Msa1267560-mRNA-1
chr8_2 CDS 72885284 72885533 72885284 ID=Msa1267560-mRNA-1:cds;Parent=Msa1267560-mRNA-1
chr8_2 three_prime_UTR 72885534 72885926 72885534 ID=Msa1267560-mRNA-1:three_prime_utr;Parent=Msa1267560-mRNA-1
Gene Sequence

>Msa1267560

ATGGCTGCTTCACCTTCTTCCGCTCTCAATTCTCTCTCTTCTCTCTCTTTCCGTTCCTCTTCCTCCTCCTCCTCTTGTTTCTCTCTCCTCCCCACAACCCACAAACTCACATTCCCTCTCACCAAAACCCCATTCTCTCTCTCCACTCTCTCCTTCACCGTCAAAGCAATTCCCACCTCCGATGAATTAGACAACACCATCCCAGAAGAAGACCTTCCCTTCAACCCACCGGAAATCCCGGAAGGCTTCATTCCACCACCTTCCATAGACGACGGTCCAGTCGAAGACGAAGATGAAATCGCCGCCGCATACGAAGAGCTATACGGTGTGGCGTACAGTGGTGTTAGTGTGCTTGGAAATGATATAAATGTGATGGATAAGACGGCGAGGAAGGATACCGGGTTCGGTTCGGGTGCGAAGAAGGAAAAGATAAGAGATGGGTTGGAAGAAAGAGTTGTTCAAGTGAGGAGGGTAACTAAGGTTGTTAAAGGAGGGAAACAAATGAGGTTTAGGGCTATTGTTGTTGTTGGTGATAAGCAAGGACGAGTTGGTGTTGGTGTTGGGAAAGCTAAGGAAGTTGTTTCTGCTGTTCAGAAATCTGCTATTAATGCTAGGAGGAATCTTATTAGAGTTCCCATGACCAAGTACTTGACTTTTCCTCATAGAGCTGATGGAGATTATGGAGCGTCAAAGGTGATGCTTAGACCCGCTTCTCCTGGTACCGGAGTTATTGCAGGTGGGTCAGTGAGAATTGTTCTTGAAATGGCCGGTGTTGAGAATGCTTTGGGGAAACAACTAGGAAGTGACAATGCACTCAACAATGCCAGAGCAACTGTAGCTGCAGTGCAGAAAATGAAGCAGTACAGTGAGGTCGCTGAGGAGCGTGGGATCCCTATGGAAGAATTATGGAAGTAG

Protein sequence

>Msa1267560

MAASPSSALNSLSSLSFRSSSSSSSCFSLLPTTHKLTFPLTKTPFSLSTLSFTVKAIPTSDELDNTIPEEDLPFNPPEIPEGFIPPPSIDDGPVEDEDEIAAAYEELYGVAYSGVSVLGNDINVMDKTARKDTGFGSGAKKEKIRDGLEERVVQVRRVTKVVKGGKQMRFRAIVVVGDKQGRVGVGVGKAKEVVSAVQKSAINARRNLIRVPMTKYLTFPHRADGDYGASKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSDNALNNARATVAAVQKMKQYSEVAEERGIPMEELWK*