AlfalfaGEDB | Msa0361540

M. sativa cultivar zhongmu-4 / Msa0361540

KEGG: -
GO: GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01151.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361540	XP_003626313.1	95.131	267	12	1	2	267	7	273	1.44e-155	444

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361540	sp\|Q9SYY4\|ELO3L_ARATH	28.223	287	176	8	4	267	9	288	1.18e-27	110

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361540	Q2HTN1	95.131	267	12	1	2	267	7	273	6.86e-156	444

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0075080	Msa0361540	0.802205	6.265696e-49	-8.615850e-47
Msa0122930	Msa0361540	0.800309	1.530839e-48	-8.615850e-47
Msa0127120	Msa0361540	0.814020	1.905703e-51	-8.615850e-47
Msa0138680	Msa0361540	0.820119	8.117722e-53	-8.615850e-47
Msa0167570	Msa0361540	0.802428	5.637402e-49	-8.615850e-47
Msa0255770	Msa0361540	0.822236	2.639367e-53	-8.615850e-47
Msa0361540	Msa0380270	0.817546	3.117423e-52	-8.615850e-47
Msa0361540	Msa0409070	0.979283	1.247436e-147	-8.615850e-47
Msa0361540	Msa0502010	0.854470	1.204984e-61	-8.615850e-47
Msa0361540	Msa0524470	0.824910	6.248905e-54	-8.615850e-47
Msa0361540	Msa0888460	0.808202	3.476896e-50	-8.615850e-47
Msa0361540	Msa1079720	0.823762	1.163367e-53	-8.615850e-47
Msa0361540	Msa1080610	0.816222	6.180821e-52	-8.615850e-47
Msa0361540	Msa1080680	0.815667	8.222418e-52	-8.615850e-47
Msa0361540	Msa1124530	0.825286	5.093117e-54	-8.615850e-47
Msa0361540	Msa1164720	0.820615	6.246481e-53	-8.615850e-47
Msa0361540	Msa1167150	0.812717	3.684062e-51	-8.615850e-47
Msa0361540	Msa1168050	0.804546	2.051483e-49	-8.615850e-47
Msa0361540	Msa1325560	0.814509	1.485818e-51	-8.615850e-47
Msa0361540	Msa1367560	0.825412	4.753697e-54	-8.615850e-47
Msa0361540	Msa1376680	0.834269	3.305060e-56	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361540	MtrunA17_Chr7g0273031	95.131	267	12	1	2	267	7	273	1.32e-159	444
Msa0361540	MtrunA17_Chr8g0373641	33.453	278	168	3	4	266	16	291	5.13e-40	140
Msa0361540	MtrunA17_Chr3g0141331	32.746	284	166	5	2	267	13	289	1.14e-39	139
Msa0361540	MtrunA17_Chr5g0403531	32.979	282	168	5	1	267	8	283	9.08e-37	132
Msa0361540	MtrunA17_Chr1g0154571	26.786	280	151	7	2	264	7	249	1.05e-17	80.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0361540	AT3G06470.1	56.934	274	105	5	4	267	8	278	2.03e-98	290
Msa0361540	AT3G06460.1	51.145	262	117	5	4	257	8	266	2.91e-84	254
Msa0361540	AT1G75000.1	31.186	295	157	6	1	264	1	280	2.94e-38	135
Msa0361540	AT4G36830.1	28.223	287	176	8	4	267	9	288	1.20e-28	110
Msa0361540	AT4G36830.2	29.183	257	154	7	4	239	9	258	1.86e-23	97.4

Find 97 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAAATGGTCCCTTCTTCTTT+TGG	0.191059	3_1:+52163301	Msa0361540:CDS
TCCGGTGGTGGTGGATGCTC+TGG	0.244745	3_1:+52163654	Msa0361540:CDS
CTCCATCCTCTCCCTCATTA+TGG	0.310997	3_1:+52163200	Msa0361540:CDS
GAGAGTGAGGGAGAGATAAA+AGG	0.313559	3_1:-52163103	None:intergenic
CATGTGAAATTTAGAATGTT+TGG	0.317423	3_1:-52163027	None:intergenic
CTCTCCCTCATTATGGCTAT+TGG	0.337974	3_1:+52163207	Msa0361540:CDS
GGATAGGTGGGAGAGGGAAG+AGG	0.353829	3_1:-52163131	None:intergenic
TCCCAATCATGTGTTATCTA+TGG	0.356723	3_1:+52163436	Msa0361540:CDS
GTGGGAGAGGGAAGAGGAGA+AGG	0.389465	3_1:-52163125	None:intergenic
GGAGGTTAGGAGTGTGGGTT+AGG	0.392757	3_1:-52163245	None:intergenic
GAGTTGGTAAGAAGTGCAAT+AGG	0.397860	3_1:-52163483	None:intergenic
CTTTATTATCACTTCGGATC+CGG	0.398177	3_1:+52163636	Msa0361540:CDS
TGGTGGATGCTCTGGGATGA+AGG	0.407237	3_1:+52163662	Msa0361540:CDS
CAGATGGTGGAGCGGAGGTT+AGG	0.414087	3_1:-52163258	None:intergenic
GTTAGGAGTGTGGGTTAGGA+TGG	0.422091	3_1:-52163241	None:intergenic
GAGGAATGAGAGACGTTTGA+TGG	0.423143	3_1:-52163391	None:intergenic
GGAAGTGAGGTGGGATAGGT+GGG	0.431318	3_1:-52163143	None:intergenic
GGATGGAGAGGATGAGATTG+TGG	0.436617	3_1:-52163185	None:intergenic
GATGCTCTGGGATGAAGGCT+TGG	0.437263	3_1:+52163667	Msa0361540:CDS
AGCCATAGATAACACATGAT+TGG	0.439169	3_1:-52163438	None:intergenic
AGGAAGTGAGGTGGGATAGG+TGG	0.440874	3_1:-52163144	None:intergenic
GGAAGAGGAGAAGGAGAGTG+AGG	0.444740	3_1:-52163116	None:intergenic
CACTTCGGATCCGGTGGTGG+TGG	0.447681	3_1:+52163645	Msa0361540:CDS
TTGAGGAAGTGAGGTGGGAT+AGG	0.449819	3_1:-52163147	None:intergenic
GCCATAGATAACACATGATT+GGG	0.452793	3_1:-52163437	None:intergenic
TGGAAAGAGAGAGGAACAAA+AGG	0.460332	3_1:-52163077	None:intergenic
GGACCATTTCGAGGGGTATG+AGG	0.467899	3_1:-52163288	None:intergenic
CCGGTGGTGGTGGATGCTCT+GGG	0.474001	3_1:+52163655	Msa0361540:CDS
TGAACACGAACTGAACAATC+TGG	0.475700	3_1:-52163590	None:intergenic
TACTACTTCCTCACCACTGT+TGG	0.476064	3_1:+52163531	Msa0361540:CDS
TGGAGCGGAGGTTAGGAGTG+TGG	0.479715	3_1:-52163251	None:intergenic
CTCATGCTTTATTATCACTT+CGG	0.480515	3_1:+52163630	Msa0361540:CDS
GTGGGTTAGGATGGTGAGGG+AGG	0.481729	3_1:-52163232	None:intergenic
GGAGCGGAGGTTAGGAGTGT+GGG	0.485741	3_1:-52163250	None:intergenic
AGTTGGTAAGAAGTGCAATA+GGG	0.487218	3_1:-52163482	None:intergenic
GAGATTGTGGAGTGCGGTGA+AGG	0.494252	3_1:-52163172	None:intergenic
TATCACTTCGGATCCGGTGG+TGG	0.497768	3_1:+52163642	Msa0361540:CDS
AGGAACAAAAGGGATGAGGC+TGG	0.499237	3_1:-52163066	None:intergenic
GAGGTGGGATAGGTGGGAGA+GGG	0.500599	3_1:-52163137	None:intergenic
GTGATAATAAAGCATGAGAC+AGG	0.502322	3_1:-52163625	None:intergenic
GATGAGGCTGGAGTGTGAGG+AGG	0.502414	3_1:-52163054	None:intergenic
TGAGGTGGGATAGGTGGGAG+AGG	0.507625	3_1:-52163138	None:intergenic
GAGGGAGAGATAAAAGGCTA+TGG	0.508066	3_1:-52163097	None:intergenic
GAAGAGGAGAAGGAGAGTGA+GGG	0.511361	3_1:-52163115	None:intergenic
GATGTAGGCCCAAAAGAAGA+AGG	0.519086	3_1:-52163310	None:intergenic
GAGGGAAGCAGATGGTGGAG+CGG	0.519215	3_1:-52163266	None:intergenic
CCCAGAGCATCCACCACCAC+CGG	0.521985	3_1:-52163655	None:intergenic
CCTCCTCATACCCCTCGAAA+TGG	0.522361	3_1:+52163285	Msa0361540:CDS
GAATGGAAATCCTTCAACAT+TGG	0.526354	3_1:+52162992	None:intergenic
AGCCATAATGAGGGAGAGGA+TGG	0.527649	3_1:-52163202	None:intergenic
GAGTGTGGGTTAGGATGGTG+AGG	0.530952	3_1:-52163236	None:intergenic
TCGGTAACGACGCGTTTCCA+CGG	0.536456	3_1:-52163564	None:intergenic
GGTAAACTAGCCAATGTTGA+AGG	0.541678	3_1:-52163002	None:intergenic
AGGGTTTGAGGAAGTGAGGT+GGG	0.545949	3_1:-52163152	None:intergenic
ATGAGGCTGGAGTGTGAGGA+GGG	0.554548	3_1:-52163053	None:intergenic
GGAGTGCGGTGAAGGGTTTG+AGG	0.557377	3_1:-52163164	None:intergenic
AAGAAGAAGGGACCATTTCG+AGG	0.558869	3_1:-52163297	None:intergenic
GGAAAGAGAGAGGAACAAAA+GGG	0.565658	3_1:-52163076	None:intergenic
CAATAGCCATAATGAGGGAG+AGG	0.566959	3_1:-52163206	None:intergenic
AGGGATGAGGCTGGAGTGTG+AGG	0.567634	3_1:-52163057	None:intergenic
AGGTGCCAATAGCCATAATG+AGG	0.568133	3_1:-52163212	None:intergenic
GACGTTTGATGGATCTTGAG+AGG	0.571177	3_1:-52163380	None:intergenic
TGATTGGGACGGTGGAATGA+TGG	0.571858	3_1:-52163422	None:intergenic
GTGAAGGGTTTGAGGAAGTG+AGG	0.573391	3_1:-52163156	None:intergenic
CAAACATTCTAAATTTCACA+TGG	0.578086	3_1:+52163028	Msa0361540:CDS
TGAAATTTAGAATGTTTGGA+TGG	0.579054	3_1:-52163023	None:intergenic
AAGGGTTTGAGGAAGTGAGG+TGG	0.580580	3_1:-52163153	None:intergenic
TATTATCACTTCGGATCCGG+TGG	0.582897	3_1:+52163639	Msa0361540:CDS
CCATTTCGAGGGGTATGAGG+AGG	0.582905	3_1:-52163285	None:intergenic
GGTATGAGGAGGGAAGCAGA+TGG	0.584509	3_1:-52163274	None:intergenic
CGACGCGTTTCCACGGCGGT+CGG	0.590079	3_1:-52163557	None:intergenic
GGAAGCAGATGGTGGAGCGG+AGG	0.590296	3_1:-52163263	None:intergenic
AGATTGTGGAGTGCGGTGAA+GGG	0.591929	3_1:-52163171	None:intergenic
AGAGAGGAACAAAAGGGATG+AGG	0.592520	3_1:-52163070	None:intergenic
AGAAGAAGGGACCATTTCGA+GGG	0.594281	3_1:-52163296	None:intergenic
CATTTCGAGGGGTATGAGGA+GGG	0.596088	3_1:-52163284	None:intergenic
ATGAGGAGGGAAGCAGATGG+TGG	0.597449	3_1:-52163271	None:intergenic
ATAACACATGATTGGGACGG+TGG	0.620196	3_1:-52163430	None:intergenic
AAAAGGCTATGGAAAGAGAG+AGG	0.627374	3_1:-52163086	None:intergenic
GTCGGATTCCAACAGTGGTG+AGG	0.628146	3_1:-52163539	None:intergenic
CGGTGGAATGATGGTACACG+TGG	0.631074	3_1:-52163413	None:intergenic
ATGTAGGCCCAAAAGAAGAA+GGG	0.632371	3_1:-52163309	None:intergenic
AGTGTGGGTTAGGATGGTGA+GGG	0.632987	3_1:-52163235	None:intergenic
CGGCGGTCGGATTCCAACAG+TGG	0.641832	3_1:-52163544	None:intergenic
TAATGAGGGAGAGGATGGAG+AGG	0.644404	3_1:-52163197	None:intergenic
GATGACGTGGACGGATGAGT+TGG	0.645959	3_1:-52163499	None:intergenic
AGAGTACATGATGACGTGGA+CGG	0.658163	3_1:-52163508	None:intergenic
GAGGATGAGATTGTGGAGTG+CGG	0.658685	3_1:-52163178	None:intergenic
GAACTGAACAATCTGGCAGT+CGG	0.662736	3_1:-52163583	None:intergenic
ATAAAGCATGAGACAGGAGA+CGG	0.662875	3_1:-52163619	None:intergenic
TGGAATGATGGTACACGTGG+AGG	0.666407	3_1:-52163410	None:intergenic
TAGATAACACATGATTGGGA+CGG	0.671340	3_1:-52163433	None:intergenic
GGTGCCAATAGCCATAATGA+GGG	0.679843	3_1:-52163211	None:intergenic
AGTAAGAGTACATGATGACG+TGG	0.708386	3_1:-52163512	None:intergenic
GAAGAAGGGACCATTTCGAG+GGG	0.711845	3_1:-52163295	None:intergenic
CTGTTGGAATCCGACCGCCG+TGG	0.731632	3_1:+52163547	Msa0361540:CDS
GTAACGACGCGTTTCCACGG+CGG	0.765126	3_1:-52163561	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGAAATTTAGAATGTTTGGA+TGG	-	chr3_1:52163026-52163045	None:intergenic	25.0%
!!	CATGTGAAATTTAGAATGTT+TGG	-	chr3_1:52163030-52163049	None:intergenic	25.0%
!	CAAACATTCTAAATTTCACA+TGG	+	chr3_1:52163028-52163047	Msa0361540:CDS	25.0%
!!!	TGAATTCAAGATATTTTGAG+AGG	-	chr3_1:52163341-52163360	None:intergenic	25.0%
!!!	TGTTTTTAATGCTTCTCTTT+TGG	+	chr3_1:52163701-52163720	Msa0361540:CDS	25.0%
!!	TGAAATTTAGAATGTTTGGA+TGG	-	chr3_1:52163026-52163045	None:intergenic	25.0%
!!	CATGTGAAATTTAGAATGTT+TGG	-	chr3_1:52163030-52163049	None:intergenic	25.0%
!	CAAACATTCTAAATTTCACA+TGG	+	chr3_1:52163028-52163047	Msa0361540:CDS	25.0%
!!!	TGAATTCAAGATATTTTGAG+AGG	-	chr3_1:52163341-52163360	None:intergenic	25.0%
!!!	TGTTTTTAATGCTTCTCTTT+TGG	+	chr3_1:52163701-52163720	Msa0361540:CDS	25.0%
!	CTCATGCTTTATTATCACTT+CGG	+	chr3_1:52163630-52163649	Msa0361540:CDS	30.0%
!	CTCATGCTTTATTATCACTT+CGG	+	chr3_1:52163630-52163649	Msa0361540:CDS	30.0%
!	AAATGGTCCCTTCTTCTTTT+GGG	+	chr3_1:52163302-52163321	Msa0361540:CDS	35.0%
!!	TTTTGAGAGGTAGAAGATGT+AGG	-	chr3_1:52163328-52163347	None:intergenic	35.0%
	TAGATAACACATGATTGGGA+CGG	-	chr3_1:52163436-52163455	None:intergenic	35.0%
	TCCCAATCATGTGTTATCTA+TGG	+	chr3_1:52163436-52163455	Msa0361540:CDS	35.0%
	GCCATAGATAACACATGATT+GGG	-	chr3_1:52163440-52163459	None:intergenic	35.0%
	AGCCATAGATAACACATGAT+TGG	-	chr3_1:52163441-52163460	None:intergenic	35.0%
!!	AGTTGGTAAGAAGTGCAATA+GGG	-	chr3_1:52163485-52163504	None:intergenic	35.0%
	GTGATAATAAAGCATGAGAC+AGG	-	chr3_1:52163628-52163647	None:intergenic	35.0%
	CTTTATTATCACTTCGGATC+CGG	+	chr3_1:52163636-52163655	Msa0361540:CDS	35.0%
!	AAATGGTCCCTTCTTCTTTT+GGG	+	chr3_1:52163302-52163321	Msa0361540:CDS	35.0%
!!	TTTTGAGAGGTAGAAGATGT+AGG	-	chr3_1:52163328-52163347	None:intergenic	35.0%
	TAGATAACACATGATTGGGA+CGG	-	chr3_1:52163436-52163455	None:intergenic	35.0%
	TCCCAATCATGTGTTATCTA+TGG	+	chr3_1:52163436-52163455	Msa0361540:CDS	35.0%
	GCCATAGATAACACATGATT+GGG	-	chr3_1:52163440-52163459	None:intergenic	35.0%
	AGCCATAGATAACACATGAT+TGG	-	chr3_1:52163441-52163460	None:intergenic	35.0%
!!	AGTTGGTAAGAAGTGCAATA+GGG	-	chr3_1:52163485-52163504	None:intergenic	35.0%
	GTGATAATAAAGCATGAGAC+AGG	-	chr3_1:52163628-52163647	None:intergenic	35.0%
	CTTTATTATCACTTCGGATC+CGG	+	chr3_1:52163636-52163655	Msa0361540:CDS	35.0%
	GGTAAACTAGCCAATGTTGA+AGG	-	chr3_1:52163005-52163024	None:intergenic	40.0%
	GGAAAGAGAGAGGAACAAAA+GGG	-	chr3_1:52163079-52163098	None:intergenic	40.0%
	TGGAAAGAGAGAGGAACAAA+AGG	-	chr3_1:52163080-52163099	None:intergenic	40.0%
	AAAAGGCTATGGAAAGAGAG+AGG	-	chr3_1:52163089-52163108	None:intergenic	40.0%
!	GAAATGGTCCCTTCTTCTTT+TGG	+	chr3_1:52163301-52163320	Msa0361540:CDS	40.0%
	ATGTAGGCCCAAAAGAAGAA+GGG	-	chr3_1:52163312-52163331	None:intergenic	40.0%
!!	GAGTTGGTAAGAAGTGCAAT+AGG	-	chr3_1:52163486-52163505	None:intergenic	40.0%
!	AGTAAGAGTACATGATGACG+TGG	-	chr3_1:52163515-52163534	None:intergenic	40.0%
	TGAACACGAACTGAACAATC+TGG	-	chr3_1:52163593-52163612	None:intergenic	40.0%
	ATAAAGCATGAGACAGGAGA+CGG	-	chr3_1:52163622-52163641	None:intergenic	40.0%
	GGTAAACTAGCCAATGTTGA+AGG	-	chr3_1:52163005-52163024	None:intergenic	40.0%
	GGAAAGAGAGAGGAACAAAA+GGG	-	chr3_1:52163079-52163098	None:intergenic	40.0%
	TGGAAAGAGAGAGGAACAAA+AGG	-	chr3_1:52163080-52163099	None:intergenic	40.0%
	AAAAGGCTATGGAAAGAGAG+AGG	-	chr3_1:52163089-52163108	None:intergenic	40.0%
!	GAAATGGTCCCTTCTTCTTT+TGG	+	chr3_1:52163301-52163320	Msa0361540:CDS	40.0%
	ATGTAGGCCCAAAAGAAGAA+GGG	-	chr3_1:52163312-52163331	None:intergenic	40.0%
!!	GAGTTGGTAAGAAGTGCAAT+AGG	-	chr3_1:52163486-52163505	None:intergenic	40.0%
!	AGTAAGAGTACATGATGACG+TGG	-	chr3_1:52163515-52163534	None:intergenic	40.0%
	TGAACACGAACTGAACAATC+TGG	-	chr3_1:52163593-52163612	None:intergenic	40.0%
	ATAAAGCATGAGACAGGAGA+CGG	-	chr3_1:52163622-52163641	None:intergenic	40.0%
	AGAGAGGAACAAAAGGGATG+AGG	-	chr3_1:52163073-52163092	None:intergenic	45.0%
	GAGGGAGAGATAAAAGGCTA+TGG	-	chr3_1:52163100-52163119	None:intergenic	45.0%
	GAGAGTGAGGGAGAGATAAA+AGG	-	chr3_1:52163106-52163125	None:intergenic	45.0%
	CAATAGCCATAATGAGGGAG+AGG	-	chr3_1:52163209-52163228	None:intergenic	45.0%
	CTCTCCCTCATTATGGCTAT+TGG	+	chr3_1:52163207-52163226	Msa0361540:CDS	45.0%
	GGTGCCAATAGCCATAATGA+GGG	-	chr3_1:52163214-52163233	None:intergenic	45.0%
	AGGTGCCAATAGCCATAATG+AGG	-	chr3_1:52163215-52163234	None:intergenic	45.0%
	AGAAGAAGGGACCATTTCGA+GGG	-	chr3_1:52163299-52163318	None:intergenic	45.0%
	AAGAAGAAGGGACCATTTCG+AGG	-	chr3_1:52163300-52163319	None:intergenic	45.0%
	GATGTAGGCCCAAAAGAAGA+AGG	-	chr3_1:52163313-52163332	None:intergenic	45.0%
!	GACGTTTGATGGATCTTGAG+AGG	-	chr3_1:52163383-52163402	None:intergenic	45.0%
	GAGGAATGAGAGACGTTTGA+TGG	-	chr3_1:52163394-52163413	None:intergenic	45.0%
	ATAACACATGATTGGGACGG+TGG	-	chr3_1:52163433-52163452	None:intergenic	45.0%
!	AGAGTACATGATGACGTGGA+CGG	-	chr3_1:52163511-52163530	None:intergenic	45.0%
	TACTACTTCCTCACCACTGT+TGG	+	chr3_1:52163531-52163550	Msa0361540:CDS	45.0%
	GAACTGAACAATCTGGCAGT+CGG	-	chr3_1:52163586-52163605	None:intergenic	45.0%
	TATTATCACTTCGGATCCGG+TGG	+	chr3_1:52163639-52163658	Msa0361540:CDS	45.0%
	AGAGAGGAACAAAAGGGATG+AGG	-	chr3_1:52163073-52163092	None:intergenic	45.0%
	GAGGGAGAGATAAAAGGCTA+TGG	-	chr3_1:52163100-52163119	None:intergenic	45.0%
	GAGAGTGAGGGAGAGATAAA+AGG	-	chr3_1:52163106-52163125	None:intergenic	45.0%
	CAATAGCCATAATGAGGGAG+AGG	-	chr3_1:52163209-52163228	None:intergenic	45.0%
	CTCTCCCTCATTATGGCTAT+TGG	+	chr3_1:52163207-52163226	Msa0361540:CDS	45.0%
	GGTGCCAATAGCCATAATGA+GGG	-	chr3_1:52163214-52163233	None:intergenic	45.0%
	AGGTGCCAATAGCCATAATG+AGG	-	chr3_1:52163215-52163234	None:intergenic	45.0%
	AGAAGAAGGGACCATTTCGA+GGG	-	chr3_1:52163299-52163318	None:intergenic	45.0%
	AAGAAGAAGGGACCATTTCG+AGG	-	chr3_1:52163300-52163319	None:intergenic	45.0%
	GATGTAGGCCCAAAAGAAGA+AGG	-	chr3_1:52163313-52163332	None:intergenic	45.0%
!	GACGTTTGATGGATCTTGAG+AGG	-	chr3_1:52163383-52163402	None:intergenic	45.0%
	GAGGAATGAGAGACGTTTGA+TGG	-	chr3_1:52163394-52163413	None:intergenic	45.0%
	ATAACACATGATTGGGACGG+TGG	-	chr3_1:52163433-52163452	None:intergenic	45.0%
!	AGAGTACATGATGACGTGGA+CGG	-	chr3_1:52163511-52163530	None:intergenic	45.0%
	TACTACTTCCTCACCACTGT+TGG	+	chr3_1:52163531-52163550	Msa0361540:CDS	45.0%
	GAACTGAACAATCTGGCAGT+CGG	-	chr3_1:52163586-52163605	None:intergenic	45.0%
	TATTATCACTTCGGATCCGG+TGG	+	chr3_1:52163639-52163658	Msa0361540:CDS	45.0%
	AGGAACAAAAGGGATGAGGC+TGG	-	chr3_1:52163069-52163088	None:intergenic	50.0%
	GAAGAGGAGAAGGAGAGTGA+GGG	-	chr3_1:52163118-52163137	None:intergenic	50.0%
	TTGAGGAAGTGAGGTGGGAT+AGG	-	chr3_1:52163150-52163169	None:intergenic	50.0%
	AGGGTTTGAGGAAGTGAGGT+GGG	-	chr3_1:52163155-52163174	None:intergenic	50.0%
	AAGGGTTTGAGGAAGTGAGG+TGG	-	chr3_1:52163156-52163175	None:intergenic	50.0%
	GTGAAGGGTTTGAGGAAGTG+AGG	-	chr3_1:52163159-52163178	None:intergenic	50.0%
	AGATTGTGGAGTGCGGTGAA+GGG	-	chr3_1:52163174-52163193	None:intergenic	50.0%
	GAGGATGAGATTGTGGAGTG+CGG	-	chr3_1:52163181-52163200	None:intergenic	50.0%
	GGATGGAGAGGATGAGATTG+TGG	-	chr3_1:52163188-52163207	None:intergenic	50.0%
	TAATGAGGGAGAGGATGGAG+AGG	-	chr3_1:52163200-52163219	None:intergenic	50.0%
	CTCCATCCTCTCCCTCATTA+TGG	+	chr3_1:52163200-52163219	Msa0361540:CDS	50.0%
	AGCCATAATGAGGGAGAGGA+TGG	-	chr3_1:52163205-52163224	None:intergenic	50.0%
!!	AGTGTGGGTTAGGATGGTGA+GGG	-	chr3_1:52163238-52163257	None:intergenic	50.0%
!!	GTTAGGAGTGTGGGTTAGGA+TGG	-	chr3_1:52163244-52163263	None:intergenic	50.0%
!	CATTTCGAGGGGTATGAGGA+GGG	-	chr3_1:52163287-52163306	None:intergenic	50.0%
	GAAGAAGGGACCATTTCGAG+GGG	-	chr3_1:52163298-52163317	None:intergenic	50.0%
	TGGAATGATGGTACACGTGG+AGG	-	chr3_1:52163413-52163432	None:intergenic	50.0%
	TGATTGGGACGGTGGAATGA+TGG	-	chr3_1:52163425-52163444	None:intergenic	50.0%
	AGGAACAAAAGGGATGAGGC+TGG	-	chr3_1:52163069-52163088	None:intergenic	50.0%
	GAAGAGGAGAAGGAGAGTGA+GGG	-	chr3_1:52163118-52163137	None:intergenic	50.0%
	TTGAGGAAGTGAGGTGGGAT+AGG	-	chr3_1:52163150-52163169	None:intergenic	50.0%
	AGGGTTTGAGGAAGTGAGGT+GGG	-	chr3_1:52163155-52163174	None:intergenic	50.0%
	AAGGGTTTGAGGAAGTGAGG+TGG	-	chr3_1:52163156-52163175	None:intergenic	50.0%
	GTGAAGGGTTTGAGGAAGTG+AGG	-	chr3_1:52163159-52163178	None:intergenic	50.0%
	AGATTGTGGAGTGCGGTGAA+GGG	-	chr3_1:52163174-52163193	None:intergenic	50.0%
	GAGGATGAGATTGTGGAGTG+CGG	-	chr3_1:52163181-52163200	None:intergenic	50.0%
	GGATGGAGAGGATGAGATTG+TGG	-	chr3_1:52163188-52163207	None:intergenic	50.0%
	TAATGAGGGAGAGGATGGAG+AGG	-	chr3_1:52163200-52163219	None:intergenic	50.0%
	CTCCATCCTCTCCCTCATTA+TGG	+	chr3_1:52163200-52163219	Msa0361540:CDS	50.0%
	AGCCATAATGAGGGAGAGGA+TGG	-	chr3_1:52163205-52163224	None:intergenic	50.0%
!!	AGTGTGGGTTAGGATGGTGA+GGG	-	chr3_1:52163238-52163257	None:intergenic	50.0%
!!	GTTAGGAGTGTGGGTTAGGA+TGG	-	chr3_1:52163244-52163263	None:intergenic	50.0%
!	CATTTCGAGGGGTATGAGGA+GGG	-	chr3_1:52163287-52163306	None:intergenic	50.0%
	GAAGAAGGGACCATTTCGAG+GGG	-	chr3_1:52163298-52163317	None:intergenic	50.0%
	TGGAATGATGGTACACGTGG+AGG	-	chr3_1:52163413-52163432	None:intergenic	50.0%
	TGATTGGGACGGTGGAATGA+TGG	-	chr3_1:52163425-52163444	None:intergenic	50.0%
	ATGAGGCTGGAGTGTGAGGA+GGG	-	chr3_1:52163056-52163075	None:intergenic	55.0%
	GGAAGAGGAGAAGGAGAGTG+AGG	-	chr3_1:52163119-52163138	None:intergenic	55.0%
	GGAAGTGAGGTGGGATAGGT+GGG	-	chr3_1:52163146-52163165	None:intergenic	55.0%
	AGGAAGTGAGGTGGGATAGG+TGG	-	chr3_1:52163147-52163166	None:intergenic	55.0%
	GAGATTGTGGAGTGCGGTGA+AGG	-	chr3_1:52163175-52163194	None:intergenic	55.0%
!!	GAGTGTGGGTTAGGATGGTG+AGG	-	chr3_1:52163239-52163258	None:intergenic	55.0%
!	GGAGGTTAGGAGTGTGGGTT+AGG	-	chr3_1:52163248-52163267	None:intergenic	55.0%
	ATGAGGAGGGAAGCAGATGG+TGG	-	chr3_1:52163274-52163293	None:intergenic	55.0%
	GGTATGAGGAGGGAAGCAGA+TGG	-	chr3_1:52163277-52163296	None:intergenic	55.0%
!	CCATTTCGAGGGGTATGAGG+AGG	-	chr3_1:52163288-52163307	None:intergenic	55.0%
	CCTCCTCATACCCCTCGAAA+TGG	+	chr3_1:52163285-52163304	Msa0361540:CDS	55.0%
!	GGACCATTTCGAGGGGTATG+AGG	-	chr3_1:52163291-52163310	None:intergenic	55.0%
	CGGTGGAATGATGGTACACG+TGG	-	chr3_1:52163416-52163435	None:intergenic	55.0%
	GATGACGTGGACGGATGAGT+TGG	-	chr3_1:52163502-52163521	None:intergenic	55.0%
	GTCGGATTCCAACAGTGGTG+AGG	-	chr3_1:52163542-52163561	None:intergenic	55.0%
	TCGGTAACGACGCGTTTCCA+CGG	-	chr3_1:52163567-52163586	None:intergenic	55.0%
	TATCACTTCGGATCCGGTGG+TGG	+	chr3_1:52163642-52163661	Msa0361540:CDS	55.0%
!!	TGGTGGATGCTCTGGGATGA+AGG	+	chr3_1:52163662-52163681	Msa0361540:CDS	55.0%
!!	GATGCTCTGGGATGAAGGCT+TGG	+	chr3_1:52163667-52163686	Msa0361540:CDS	55.0%
	ATGAGGCTGGAGTGTGAGGA+GGG	-	chr3_1:52163056-52163075	None:intergenic	55.0%
	GGAAGAGGAGAAGGAGAGTG+AGG	-	chr3_1:52163119-52163138	None:intergenic	55.0%
	GGAAGTGAGGTGGGATAGGT+GGG	-	chr3_1:52163146-52163165	None:intergenic	55.0%
	AGGAAGTGAGGTGGGATAGG+TGG	-	chr3_1:52163147-52163166	None:intergenic	55.0%
	GAGATTGTGGAGTGCGGTGA+AGG	-	chr3_1:52163175-52163194	None:intergenic	55.0%
!!	GAGTGTGGGTTAGGATGGTG+AGG	-	chr3_1:52163239-52163258	None:intergenic	55.0%
!	GGAGGTTAGGAGTGTGGGTT+AGG	-	chr3_1:52163248-52163267	None:intergenic	55.0%
	ATGAGGAGGGAAGCAGATGG+TGG	-	chr3_1:52163274-52163293	None:intergenic	55.0%
	GGTATGAGGAGGGAAGCAGA+TGG	-	chr3_1:52163277-52163296	None:intergenic	55.0%
!	CCATTTCGAGGGGTATGAGG+AGG	-	chr3_1:52163288-52163307	None:intergenic	55.0%
	CCTCCTCATACCCCTCGAAA+TGG	+	chr3_1:52163285-52163304	Msa0361540:CDS	55.0%
!	GGACCATTTCGAGGGGTATG+AGG	-	chr3_1:52163291-52163310	None:intergenic	55.0%
	CGGTGGAATGATGGTACACG+TGG	-	chr3_1:52163416-52163435	None:intergenic	55.0%
	GATGACGTGGACGGATGAGT+TGG	-	chr3_1:52163502-52163521	None:intergenic	55.0%
	GTCGGATTCCAACAGTGGTG+AGG	-	chr3_1:52163542-52163561	None:intergenic	55.0%
	TCGGTAACGACGCGTTTCCA+CGG	-	chr3_1:52163567-52163586	None:intergenic	55.0%
	TATCACTTCGGATCCGGTGG+TGG	+	chr3_1:52163642-52163661	Msa0361540:CDS	55.0%
!!	TGGTGGATGCTCTGGGATGA+AGG	+	chr3_1:52163662-52163681	Msa0361540:CDS	55.0%
!!	GATGCTCTGGGATGAAGGCT+TGG	+	chr3_1:52163667-52163686	Msa0361540:CDS	55.0%
	GATGAGGCTGGAGTGTGAGG+AGG	-	chr3_1:52163057-52163076	None:intergenic	60.0%
	AGGGATGAGGCTGGAGTGTG+AGG	-	chr3_1:52163060-52163079	None:intergenic	60.0%
	GTGGGAGAGGGAAGAGGAGA+AGG	-	chr3_1:52163128-52163147	None:intergenic	60.0%
	GGATAGGTGGGAGAGGGAAG+AGG	-	chr3_1:52163134-52163153	None:intergenic	60.0%
	GAGGTGGGATAGGTGGGAGA+GGG	-	chr3_1:52163140-52163159	None:intergenic	60.0%
	TGAGGTGGGATAGGTGGGAG+AGG	-	chr3_1:52163141-52163160	None:intergenic	60.0%
	GGAGTGCGGTGAAGGGTTTG+AGG	-	chr3_1:52163167-52163186	None:intergenic	60.0%
!!	GTGGGTTAGGATGGTGAGGG+AGG	-	chr3_1:52163235-52163254	None:intergenic	60.0%
!	GGAGCGGAGGTTAGGAGTGT+GGG	-	chr3_1:52163253-52163272	None:intergenic	60.0%
	TGGAGCGGAGGTTAGGAGTG+TGG	-	chr3_1:52163254-52163273	None:intergenic	60.0%
!!	CAGATGGTGGAGCGGAGGTT+AGG	-	chr3_1:52163261-52163280	None:intergenic	60.0%
!!	GAGGGAAGCAGATGGTGGAG+CGG	-	chr3_1:52163269-52163288	None:intergenic	60.0%
	GTAACGACGCGTTTCCACGG+CGG	-	chr3_1:52163564-52163583	None:intergenic	60.0%
	GATGAGGCTGGAGTGTGAGG+AGG	-	chr3_1:52163057-52163076	None:intergenic	60.0%
	AGGGATGAGGCTGGAGTGTG+AGG	-	chr3_1:52163060-52163079	None:intergenic	60.0%
	GTGGGAGAGGGAAGAGGAGA+AGG	-	chr3_1:52163128-52163147	None:intergenic	60.0%
	GGATAGGTGGGAGAGGGAAG+AGG	-	chr3_1:52163134-52163153	None:intergenic	60.0%
	GAGGTGGGATAGGTGGGAGA+GGG	-	chr3_1:52163140-52163159	None:intergenic	60.0%
	TGAGGTGGGATAGGTGGGAG+AGG	-	chr3_1:52163141-52163160	None:intergenic	60.0%
	GGAGTGCGGTGAAGGGTTTG+AGG	-	chr3_1:52163167-52163186	None:intergenic	60.0%
!!	GTGGGTTAGGATGGTGAGGG+AGG	-	chr3_1:52163235-52163254	None:intergenic	60.0%
!	GGAGCGGAGGTTAGGAGTGT+GGG	-	chr3_1:52163253-52163272	None:intergenic	60.0%
	TGGAGCGGAGGTTAGGAGTG+TGG	-	chr3_1:52163254-52163273	None:intergenic	60.0%
!!	CAGATGGTGGAGCGGAGGTT+AGG	-	chr3_1:52163261-52163280	None:intergenic	60.0%
!!	GAGGGAAGCAGATGGTGGAG+CGG	-	chr3_1:52163269-52163288	None:intergenic	60.0%
	GTAACGACGCGTTTCCACGG+CGG	-	chr3_1:52163564-52163583	None:intergenic	60.0%
!!	GGAAGCAGATGGTGGAGCGG+AGG	-	chr3_1:52163266-52163285	None:intergenic	65.0%
	CGGCGGTCGGATTCCAACAG+TGG	-	chr3_1:52163547-52163566	None:intergenic	65.0%
	CTGTTGGAATCCGACCGCCG+TGG	+	chr3_1:52163547-52163566	Msa0361540:CDS	65.0%
!	CACTTCGGATCCGGTGGTGG+TGG	+	chr3_1:52163645-52163664	Msa0361540:CDS	65.0%
!!	TCCGGTGGTGGTGGATGCTC+TGG	+	chr3_1:52163654-52163673	Msa0361540:CDS	65.0%
!	CCCAGAGCATCCACCACCAC+CGG	-	chr3_1:52163658-52163677	None:intergenic	65.0%
!!	CCGGTGGTGGTGGATGCTCT+GGG	+	chr3_1:52163655-52163674	Msa0361540:CDS	65.0%
!!	GGAAGCAGATGGTGGAGCGG+AGG	-	chr3_1:52163266-52163285	None:intergenic	65.0%
	CGGCGGTCGGATTCCAACAG+TGG	-	chr3_1:52163547-52163566	None:intergenic	65.0%
	CTGTTGGAATCCGACCGCCG+TGG	+	chr3_1:52163547-52163566	Msa0361540:CDS	65.0%
!	CACTTCGGATCCGGTGGTGG+TGG	+	chr3_1:52163645-52163664	Msa0361540:CDS	65.0%
!!	TCCGGTGGTGGTGGATGCTC+TGG	+	chr3_1:52163654-52163673	Msa0361540:CDS	65.0%
!	CCCAGAGCATCCACCACCAC+CGG	-	chr3_1:52163658-52163677	None:intergenic	65.0%
!!	CCGGTGGTGGTGGATGCTCT+GGG	+	chr3_1:52163655-52163674	Msa0361540:CDS	65.0%
	CGACGCGTTTCCACGGCGGT+CGG	-	chr3_1:52163560-52163579	None:intergenic	70.0%
	CGACGCGTTTCCACGGCGGT+CGG	-	chr3_1:52163560-52163579	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	52162994	52163800	52162994	ID=Msa0361540;Name=Msa0361540
chr3_1	mRNA	52162994	52163800	52162994	ID=Msa0361540-mRNA-1;Parent=Msa0361540;Name=Msa0361540-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|268
chr3_1	exon	52162994	52163800	52162994	ID=Msa0361540-mRNA-1:exon:9332;Parent=Msa0361540-mRNA-1
chr3_1	CDS	52162994	52163800	52162994	ID=Msa0361540-mRNA-1:cds;Parent=Msa0361540-mRNA-1

Gene Sequence

>Msa0361540

ATGGAAATCCTTCAACATTGGCTAGTTTACCATCCAAACATTCTAAATTTCACATGGAACCCTCCTCACACTCCAGCCTCATCCCTTTTGTTCCTCTCTCTTTCCATAGCCTTTTATCTCTCCCTCACTCTCCTTCTCCTCTTCCCTCTCCCACCTATCCCACCTCACTTCCTCAAACCCTTCACCGCACTCCACAATCTCATCCTCTCCATCCTCTCCCTCATTATGGCTATTGGCACCTCCCTCACCATCCTAACCCACACTCCTAACCTCCGCTCCACCATCTGCTTCCCTCCTCATACCCCTCGAAATGGTCCCTTCTTCTTTTGGGCCTACATCTTCTACCTCTCAAAATATCTTGAATTCATTGACACACTCTTCATCATCCTCTCAAGATCCATCAAACGTCTCTCATTCCTCCACGTGTACCATCATTCCACCGTCCCAATCATGTGTTATCTATGGCTTAATTCTTCTCAATCACTCTTCCCTATTGCACTTCTTACCAACTCATCCGTCCACGTCATCATGTACTCTTACTACTTCCTCACCACTGTTGGAATCCGACCGCCGTGGAAACGCGTCGTTACCGACTGCCAGATTGTTCAGTTCGTGTTCAGCTTCGCCGTCTCCTGTCTCATGCTTTATTATCACTTCGGATCCGGTGGTGGTGGATGCTCTGGGATGAAGGCTTGGTGCTTCAATGCTGTTTTTAATGCTTCTCTTTTGGCTCTTTTTCTTGATTTTCATCTCAAGAGTTATGCTAATTCTAAGAAGAAGAAACATACTACCGAAAAAGACTTGTGA

Protein sequence

>Msa0361540

MEILQHWLVYHPNILNFTWNPPHTPASSLLFLSLSIAFYLSLTLLLLFPLPPIPPHFLKPFTALHNLILSILSLIMAIGTSLTILTHTPNLRSTICFPPHTPRNGPFFFWAYIFYLSKYLEFIDTLFIILSRSIKRLSFLHVYHHSTVPIMCYLWLNSSQSLFPIALLTNSSVHVIMYSYYFLTTVGIRPPWKRVVTDCQIVQFVFSFAVSCLMLYYHFGSGGGGCSGMKAWCFNAVFNASLLALFLDFHLKSYANSKKKKHTTEKDL*