AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0291490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0291490 MtrunA17_Chr2g0311181 97.866 328 7 0 1 328 1 328 0.0 664
Msa0291490 MtrunA17_Chr3g0094341 97.354 189 5 0 51 239 13 201 7.62e-134 379
Msa0291490 MtrunA17_Chr2g0304101 39.662 237 138 2 69 300 69 305 1.35e-57 188
Msa0291490 MtrunA17_Chr5g0417641 36.546 249 149 3 60 301 48 294 6.10e-49 166
Msa0291490 MtrunA17_Chr7g0250261 31.923 260 161 7 51 299 25 279 2.33e-33 124
Msa0291490 MtrunA17_Chr0c29g0494001 31.923 260 161 7 51 299 25 279 2.33e-33 124
Msa0291490 MtrunA17_Chr5g0445491 26.639 244 161 6 70 296 227 469 1.50e-25 106
Msa0291490 MtrunA17_Chr4g0034981 28.077 260 173 7 69 316 345 602 3.80e-23 100
Msa0291490 MtrunA17_Chr2g0294671 29.464 224 146 5 87 303 268 486 1.23e-22 98.2
Msa0291490 MtrunA17_Chr6g0448821 28.426 197 134 2 87 277 139 334 1.65e-22 96.7
Msa0291490 MtrunA17_Chr6g0448821 26.263 198 123 6 65 255 161 342 2.54e-14 73.2
Msa0291490 MtrunA17_Chr4g0043941 26.966 178 121 2 129 300 145 319 7.76e-16 77.0
Msa0291490 MtrunA17_Chr5g0428941 21.739 276 169 5 75 304 213 487 2.35e-15 76.6
Msa0291490 MtrunA17_Chr1g0212691 23.373 338 166 12 75 326 145 475 5.63e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0291490 AT2G36000.1 55.985 259 110 3 70 324 74 332 1.54e-99 297
Msa0291490 AT2G36000.2 57.083 240 99 3 70 305 74 313 3.33e-94 283
Msa0291490 AT2G34620.1 40.000 240 139 2 69 303 55 294 5.21e-59 192
Msa0291490 AT2G03050.2 38.403 263 149 6 50 303 15 273 2.70e-53 177
Msa0291490 AT2G03050.1 38.403 263 149 6 50 303 14 272 3.12e-53 176
Msa0291490 AT3G18870.1 31.020 245 155 5 66 302 33 271 1.23e-34 127
Msa0291490 AT5G55580.2 25.926 243 164 6 70 296 114 356 1.52e-25 105
Msa0291490 AT5G55580.1 25.926 243 164 6 70 296 220 462 3.80e-25 105
Msa0291490 AT4G14605.2 26.033 242 170 5 66 300 229 468 2.06e-21 95.1
Msa0291490 AT4G14605.1 26.033 242 170 5 66 300 229 468 2.06e-21 95.1
Msa0291490 AT1G78930.1 27.619 210 144 3 75 277 344 552 6.70e-21 94.0
Msa0291490 AT2G21710.1 28.629 248 161 7 69 303 352 596 1.56e-19 89.7
Msa0291490 AT4G38160.4 25.106 235 163 6 55 277 65 298 1.37e-15 77.0
Msa0291490 AT4G38160.1 25.106 235 163 6 55 277 65 298 1.37e-15 77.0
Msa0291490 AT4G38160.3 25.106 235 163 6 55 277 65 298 1.50e-15 77.0
Msa0291490 AT4G38160.2 25.106 235 163 6 55 277 65 298 2.66e-15 76.3
Msa0291490 AT2G44020.1 23.134 268 159 8 89 311 203 468 7.44e-15 75.5
Msa0291490 AT4G02990.2 23.741 278 163 8 73 303 219 494 1.22e-12 68.9
Msa0291490 AT4G02990.1 23.741 278 163 8 73 303 219 494 1.22e-12 68.9

Find 98 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAATACTTTGAAAATAT+TGG 0.171383 2_3:-40089788 Msa0291490:CDS
TTATAGTATTAAGAATAATT+TGG 0.227622 2_3:-40089711 Msa0291490:CDS
TCTGCAAACCCTTTCATTCT+AGG 0.246141 2_3:-40091958 Msa0291490:CDS
CAGAGACGAGTGAAGGATTT+GGG 0.284020 2_3:+40091977 None:intergenic
TAGTGGTTATGTTAGTTTAC+AGG 0.286851 2_3:-40089348 Msa0291490:three_prime_UTR
ACCACAAAGTAATTGTATTT+CGG 0.299616 2_3:+40089686 None:intergenic
TGCAATTGAGTTTCGGCGTT+TGG 0.299697 2_3:-40090065 Msa0291490:CDS
CAATTACTTTGTGGTGGAAA+TGG 0.302908 2_3:-40089678 Msa0291490:CDS
AGCAGTGGCAGAACACATTT+TGG 0.303905 2_3:+40092033 None:intergenic
GCAGAGACGAGTGAAGGATT+TGG 0.326298 2_3:+40091976 None:intergenic
ACATAAACGGTGTGTAGAAA+TGG 0.346811 2_3:-40089582 Msa0291490:CDS
ATGTATTACAGGTTGTAAAA+TGG 0.349290 2_3:-40090267 Msa0291490:intron
ATAGAAGAATGAAGAAGAAA+TGG 0.355601 2_3:+40092066 None:intergenic
AATTACTTTGTGGTGGAAAT+GGG 0.364045 2_3:-40089677 Msa0291490:CDS
TCTCATTTAGCTTAGAGAAT+AGG 0.372077 2_3:-40089616 Msa0291490:CDS
CTACCTCCCAACACTGATAC+TGG 0.373802 2_3:-40090226 Msa0291490:CDS
GTGATGTGAAGTGGTTGTTT+TGG 0.382007 2_3:+40089264 None:intergenic
TTGGGAGGTAGAGTTTGATT+TGG 0.389507 2_3:+40090238 None:intergenic
ATTTCTCTGCAATTGAGTTT+CGG 0.390370 2_3:-40090072 Msa0291490:CDS
CGACACTACATGATAGCAAA+TGG 0.394976 2_3:+40089831 None:intergenic
CTGCAAACCCTTTCATTCTA+GGG 0.396577 2_3:-40091957 Msa0291490:CDS
CCTCTTCTATGCCAATACTT+TGG 0.410530 2_3:+40089867 None:intergenic
CCTCCTGCTTAAAACTCCTT+TGG 0.414719 2_3:-40089311 Msa0291490:three_prime_UTR
CCTTGAAAACATCTCCTTTG+TGG 0.416787 2_3:-40089472 Msa0291490:CDS
ACTTTGGTGGTAAGAATCTC+CGG 0.437649 2_3:+40090031 None:intergenic
GGGTATAATGTCTGAGACTT+TGG 0.442292 2_3:+40090015 None:intergenic
GCGTTTGGTTGGCATGTGCC+CGG 0.446971 2_3:-40090050 Msa0291490:CDS
TGGAAACCAGTATCAGTGTT+GGG 0.452228 2_3:+40090220 None:intergenic
TCCACAGTGGAATACATTAC+CGG 0.452556 2_3:-40090100 Msa0291490:CDS
TCGTGAAGAATGGAAGGAAA+TGG 0.456886 2_3:+40091925 None:intergenic
CACCGAGAAGTTCGTGTAAG+TGG 0.461340 2_3:-40089977 Msa0291490:CDS
AGCCACTTACACGAACTTCT+CGG 0.475846 2_3:+40089975 None:intergenic
GCCGAAATACAATTACTTTG+TGG 0.483843 2_3:-40089687 Msa0291490:CDS
ACATCTCCTTTGTGGTGTGC+TGG 0.485125 2_3:-40089464 Msa0291490:CDS
CATAAACGGTGTGTAGAAAT+GGG 0.489419 2_3:-40089581 Msa0291490:CDS
GGATTAAACCTCGACATAAA+CGG 0.494383 2_3:-40089595 Msa0291490:CDS
AGAAGGTAGGTCGTGAAGAA+TGG 0.495056 2_3:+40091915 None:intergenic
AACGGAGATTGGAGAAGTGA+TGG 0.495841 2_3:+40092168 None:intergenic
CTTCTATGCCAATACTTTGG+AGG 0.495955 2_3:+40089870 None:intergenic
TATTGAAAATCATCCGAAGC+TGG 0.499544 2_3:-40090149 Msa0291490:CDS
ATTGAGTTTCGGCGTTTGGT+TGG 0.499938 2_3:-40090061 Msa0291490:CDS
GTGTGTTCTAGAACGGAGAT+TGG 0.503959 2_3:+40092157 None:intergenic
AGATAATGTTAGGAAGTTAG+TGG 0.505657 2_3:-40089365 Msa0291490:three_prime_UTR
AAAACAGCTGAGGAAATCTT+CGG 0.515087 2_3:+40089735 None:intergenic
CGGTGAAGGAACGTGAAGAC+GGG 0.516327 2_3:+40089995 None:intergenic
CTTTGGAGGAAGTACATAGT+AGG 0.519338 2_3:+40089884 None:intergenic
ATGTAATAAATCGTCGTCCT+CGG 0.520791 2_3:-40089940 Msa0291490:CDS
AGTGACGCAGTAACCAGCTT+CGG 0.520879 2_3:+40090136 None:intergenic
TGGTATCAAAATCTGAGCTA+AGG 0.521053 2_3:+40089284 None:intergenic
GGAAATGGGGAGAGATTTGA+AGG 0.522542 2_3:-40089663 Msa0291490:CDS
AGTGGTTATGTTAGTTTACA+GGG 0.528480 2_3:-40089347 Msa0291490:three_prime_UTR
AGTAGGAACCCTAGAATGAA+AGG 0.529503 2_3:+40091949 None:intergenic
TACCTTCTTTGTCAGAGCTA+CGG 0.531441 2_3:-40091900 Msa0291490:intron
GGGTAACAGTGTTGAGATGG+TGG 0.538834 2_3:+40092132 None:intergenic
GTCTTTAATAACAAAGGAAG+AGG 0.541502 2_3:+40089548 None:intergenic
TTGGAAACCAGTATCAGTGT+TGG 0.541510 2_3:+40090219 None:intergenic
GATTGGAGAAGTGATGGATG+AGG 0.542930 2_3:+40092174 None:intergenic
GAATGGAAGGAAATGGAAGT+AGG 0.544386 2_3:+40091932 None:intergenic
GGTAGGTCGTGAAGAATGGA+AGG 0.551426 2_3:+40091919 None:intergenic
GAAATACAATTACTTTGTGG+TGG 0.553613 2_3:-40089684 Msa0291490:CDS
GACACTACATGATAGCAAAT+GGG 0.553619 2_3:+40089832 None:intergenic
ATGTACTTCCTCCAAAGTAT+TGG 0.554399 2_3:-40089878 Msa0291490:CDS
TCGGTGAAGGAACGTGAAGA+CGG 0.554418 2_3:+40089994 None:intergenic
AATTGCAGAGAAATCCATTC+CGG 0.562172 2_3:+40090081 None:intergenic
TTTGGGAATGTGGTGATCGG+TGG 0.563121 2_3:+40091994 None:intergenic
AAGCTAAATGAGAAATAATG+AGG 0.567357 2_3:+40089626 None:intergenic
TCACTAGTCTTTAATAACAA+AGG 0.568382 2_3:+40089542 None:intergenic
GGATTTGGGAATGTGGTGAT+CGG 0.571770 2_3:+40091991 None:intergenic
ACATTCTTTGTGATGTGAAG+TGG 0.572952 2_3:+40089255 None:intergenic
TATAATGTCTGAGACTTTGG+TGG 0.577681 2_3:+40090018 None:intergenic
GTAGGAACCCTAGAATGAAA+GGG 0.583590 2_3:+40091950 None:intergenic
CTTTGGTGGTAAGAATCTCC+GGG 0.592939 2_3:+40090032 None:intergenic
GGGTTTGCAGAGACGAGTGA+AGG 0.596048 2_3:+40091970 None:intergenic
ATTACTTTGTGGTGGAAATG+GGG 0.596286 2_3:-40089676 Msa0291490:CDS
TCTATACTTGATCAATATCA+CGG 0.596870 2_3:+40089441 None:intergenic
GTGGTGATCGGTGGAAAACA+AGG 0.598610 2_3:+40092003 None:intergenic
TCTACACACCGTTTATGTCG+AGG 0.599414 2_3:+40089587 None:intergenic
AACCGTAGCTCTGACAAAGA+AGG 0.600770 2_3:+40091898 None:intergenic
CCAAAGTATTGGCATAGAAG+AGG 0.600971 2_3:-40089867 Msa0291490:CDS
GGTGGGAGTGTGTTCTAGAA+CGG 0.602784 2_3:+40092150 None:intergenic
AAACAAGGGTGTTGTAGCAG+TGG 0.603821 2_3:+40092018 None:intergenic
TTACACGAACTTCTCGGTGA+AGG 0.604014 2_3:+40089981 None:intergenic
AGTGGAATACATTACCGGAA+TGG 0.608509 2_3:-40090095 Msa0291490:CDS
AATGGGTAACAGTGTTGAGA+TGG 0.626913 2_3:+40092129 None:intergenic
ATACTATAACAAAACAGCTG+AGG 0.633616 2_3:+40089725 None:intergenic
AATGGGGAGAGATTTGAAGG+AGG 0.634987 2_3:-40089660 Msa0291490:CDS
GTCTTGTATCTAGAATCTAT+CGG 0.638166 2_3:-40090190 Msa0291490:CDS
GGTAACAGTGTTGAGATGGT+GGG 0.642389 2_3:+40092133 None:intergenic
GAGTGAAGGATTTGGGAATG+TGG 0.645827 2_3:+40091984 None:intergenic
TCTGAGCTAAGGAACACCAA+AGG 0.675119 2_3:+40089295 None:intergenic
TCACGGCCAGCACACCACAA+AGG 0.684243 2_3:+40089458 None:intergenic
GTAGCTCTGACAAAGAAGGT+AGG 0.686492 2_3:+40091902 None:intergenic
GGAACATCGATGTAGTGTCA+CGG 0.693137 2_3:+40089756 None:intergenic
TCCGGTAATGTATTCCACTG+TGG 0.695997 2_3:+40090099 None:intergenic
ACATTGCAAATGATCAACCG+AGG 0.728440 2_3:+40089923 None:intergenic
AAACCAGTATCAGTGTTGGG+AGG 0.731689 2_3:+40090223 None:intergenic
TGGTGATCGGTGGAAAACAA+GGG 0.748516 2_3:+40092004 None:intergenic
TGACGATATAAAATCCACAG+TGG 0.749902 2_3:-40090113 Msa0291490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAAATTGAAAAAAAT+GGG + chr2_3:40089324-40089343 None:intergenic 10.0%
!!! ATAATTTAGATTTTTATTAC+TGG - chr2_3:40089752-40089771 Msa0291490:CDS 10.0%
!!! TAATTTAGATTTTTATTACT+GGG - chr2_3:40089753-40089772 Msa0291490:CDS 10.0%
!! TTATAGTATTAAGAATAATT+TGG - chr2_3:40091722-40091741 Msa0291490:intron 10.0%
!! GAAATTGAAATTGAAAAAAA+TGG + chr2_3:40089325-40089344 None:intergenic 15.0%
!!! AAGTTTTCATTTTTATTACT+GGG - chr2_3:40089666-40089685 Msa0291490:CDS 15.0%
!!! AAGTTTTCATTTTTATTACT+GGG - chr2_3:40089666-40089685 Msa0291490:CDS 15.0%
!!! AAGAATTTAGTTATGTTTTT+GGG - chr2_3:40089974-40089993 Msa0291490:CDS 15.0%
!!! AAGGTTTTTTCTTTTTATTT+TGG - chr2_3:40090048-40090067 Msa0291490:CDS 15.0%
!!! TTTTTCTTTTTATTTTGGTT+TGG - chr2_3:40090053-40090072 Msa0291490:CDS 15.0%
!!! TTTTCTTTTTATTTTGGTTT+GGG - chr2_3:40090054-40090073 Msa0291490:CDS 15.0%
!! TTATTCAATTCAATTAGTAA+AGG + chr2_3:40090220-40090239 None:intergenic 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG + chr2_3:40090373-40090392 None:intergenic 15.0%
!!! TTAGTTGATTTTAATAGTTT+AGG + chr2_3:40090372-40090391 None:intergenic 15.0%
!! AACTATTAAAATCAACTAAA+AGG - chr2_3:40090290-40090309 Msa0291490:intron 15.0%
!! AACTATTAAAATCAACTAAA+AGG + chr2_3:40090290-40090309 None:intergenic 15.0%
!!! TTAGTTGATTTTAATAGTTT+AGG - chr2_3:40090372-40090391 Msa0291490:intron 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG - chr2_3:40090373-40090392 Msa0291490:intron 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG + chr2_3:40090727-40090746 None:intergenic 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG - chr2_3:40090727-40090746 Msa0291490:intron 15.0%
!!! TATTTTCAAAGTATTCAATT+CGG + chr2_3:40091644-40091663 None:intergenic 15.0%
!!! ATTGAATACTTTGAAAATAT+TGG - chr2_3:40091645-40091664 Msa0291490:intron 15.0%
!!! AACTTTTCATTTTTCTTACT+GGG - chr2_3:40089582-40089601 Msa0291490:CDS 20.0%
!!! CAAGTTTTCATTTTTATTAC+TGG - chr2_3:40089665-40089684 Msa0291490:CDS 20.0%
!!! CAAGTTTTCATTTTTATTAC+TGG - chr2_3:40089665-40089684 Msa0291490:CDS 20.0%
!!! CTACTTTAGATTTTTCTTAT+TGG - chr2_3:40089804-40089823 Msa0291490:CDS 20.0%
!!! CAAGAATTTAGTTATGTTTT+TGG - chr2_3:40089973-40089992 Msa0291490:CDS 20.0%
!!! TTTCTTTTTATTTTGGTTTG+GGG - chr2_3:40090055-40090074 Msa0291490:CDS 20.0%
!!! TTTGGTTAGGATTTTATTAA+CGG - chr2_3:40090453-40090472 Msa0291490:intron 20.0%
!!! ATTTTATTAACGGATGTAAA+TGG - chr2_3:40090463-40090482 Msa0291490:intron 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG - chr2_3:40090629-40090648 Msa0291490:intron 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG + chr2_3:40090629-40090648 None:intergenic 20.0%
!! TTAATTTCATGCTTTAGTAA+AGG - chr2_3:40091067-40091086 Msa0291490:intron 20.0%
!!! ATTTTCAAAGTATTCAATTC+GGG + chr2_3:40091643-40091662 None:intergenic 20.0%
!!! TTTTGTGACTTTTTCTTTTA+TGG - chr2_3:40092043-40092062 Msa0291490:exon 20.0%
!!! TTTTATGGATAGATAATGTT+AGG - chr2_3:40092058-40092077 Msa0291490:five_prime_UTR 20.0%
! ATAGAAGAATGAAGAAGAAA+TGG + chr2_3:40089370-40089389 None:intergenic 25.0%
! TGAAAAGTTGAAGATTATTG+AGG + chr2_3:40089571-40089590 None:intergenic 25.0%
!!! CAACTTTTCATTTTTCTTAC+TGG - chr2_3:40089581-40089600 Msa0291490:CDS 25.0%
! GCTTAATAATGCTAAAGTTT+AGG - chr2_3:40089610-40089629 Msa0291490:CDS 25.0%
!!! AAAGTTTAGGTTTTTCTTAC+CGG - chr2_3:40089623-40089642 Msa0291490:CDS 25.0%
! TGATTAATAATGCTCTAGTT+TGG - chr2_3:40089832-40089851 Msa0291490:CDS 25.0%
!!! CTATTATTCTAAGACATTGT+AGG - chr2_3:40089899-40089918 Msa0291490:CDS 25.0%
! AAATTCTTGTGCATATGAAA+TGG + chr2_3:40089962-40089981 None:intergenic 25.0%
! CAACAGAATTCAACAATAAA+CGG + chr2_3:40090005-40090024 None:intergenic 25.0%
! TTAAGCACTTAAAAACCAAA+GGG + chr2_3:40090158-40090177 None:intergenic 25.0%
! ATTAAGCACTTAAAAACCAA+AGG + chr2_3:40090159-40090178 None:intergenic 25.0%
! TAATAGTTTAGGGACTAAAT+TGG + chr2_3:40090278-40090297 None:intergenic 25.0%
! ACCAAATTGACAAATAGTTT+AGG - chr2_3:40090396-40090415 Msa0291490:intron 25.0%
! CCAAATTGACAAATAGTTTA+GGG - chr2_3:40090397-40090416 Msa0291490:intron 25.0%
! ACATTATATTACAGTGTGTT+TGG - chr2_3:40090435-40090454 Msa0291490:intron 25.0%
! CATTCATTTAATGATGTATG+TGG - chr2_3:40090654-40090673 Msa0291490:intron 25.0%
! CATTCATTTAATGATGTATG+TGG + chr2_3:40090654-40090673 None:intergenic 25.0%
! CAGTAAAGTTTATCATGTAA+CGG + chr2_3:40090998-40091017 None:intergenic 25.0%
! TGTCAATAACATACTTTCTT+TGG - chr2_3:40091018-40091037 Msa0291490:intron 25.0%
! GAAATTAATGTGCATTTAAC+AGG + chr2_3:40091055-40091074 None:intergenic 25.0%
! ATGTATTACAGGTTGTAAAA+TGG - chr2_3:40091166-40091185 Msa0291490:intron 25.0%
!!! TTTTCAAAGTATTCAATTCG+GGG + chr2_3:40091642-40091661 None:intergenic 25.0%
! ACCACAAAGTAATTGTATTT+CGG + chr2_3:40091750-40091769 None:intergenic 25.0%
! AAGCTAAATGAGAAATAATG+AGG + chr2_3:40091810-40091829 None:intergenic 25.0%
!!! TCACTAGTCTTTAATAACAA+AGG + chr2_3:40091894-40091913 None:intergenic 25.0%
! TCTATACTTGATCAATATCA+CGG + chr2_3:40091995-40092014 None:intergenic 25.0%
! AAGAAAAAGTCACAAAAACA+AGG + chr2_3:40092040-40092059 None:intergenic 25.0%
TGAAGATTATTGAGGTTGAA+AGG + chr2_3:40089563-40089582 None:intergenic 30.0%
!! AAGTTTAGGTTTTTCTTACC+GGG - chr2_3:40089624-40089643 Msa0291490:CDS 30.0%
AACATAATTAAGCATAGACC+CGG + chr2_3:40089645-40089664 None:intergenic 30.0%
AAAAACCTTAATCCTTCAAG+AGG + chr2_3:40090037-40090056 None:intergenic 30.0%
TATACTCTCATCCATCAATT+TGG + chr2_3:40090339-40090358 None:intergenic 30.0%
! ATGGATGAGAGTATAGTTTA+AGG - chr2_3:40090344-40090363 Msa0291490:intron 30.0%
CCCTAAACTATTTGTCAATT+TGG + chr2_3:40090400-40090419 None:intergenic 30.0%
ATATTACAGTGTGTTTGGTT+AGG - chr2_3:40090440-40090459 Msa0291490:intron 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG + chr2_3:40090731-40090750 None:intergenic 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG + chr2_3:40090730-40090749 None:intergenic 30.0%
GATGTATGTGGTTCATAATA+TGG + chr2_3:40090681-40090700 None:intergenic 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG - chr2_3:40090730-40090749 Msa0291490:intron 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG - chr2_3:40090731-40090750 Msa0291490:intron 30.0%
GGAGTAAAAAACTTGATCAA+TGG - chr2_3:40090828-40090847 Msa0291490:intron 30.0%
ATTAATGTGCATTTAACAGG+AGG + chr2_3:40091052-40091071 None:intergenic 30.0%
TATTTGCTTGCATGTTGAAT+TGG - chr2_3:40091097-40091116 Msa0291490:intron 30.0%
!! TGATACTGGTTTCCAAAAAA+AGG - chr2_3:40091221-40091240 Msa0291490:intron 30.0%
!!! CTAGATACAAGACCTTTTTT+TGG + chr2_3:40091236-40091255 None:intergenic 30.0%
! GTCTTGTATCTAGAATCTAT+CGG - chr2_3:40091243-40091262 Msa0291490:intron 30.0%
ATTTCTCTGCAATTGAGTTT+CGG - chr2_3:40091361-40091380 Msa0291490:intron 30.0%
ATACTATAACAAAACAGCTG+AGG + chr2_3:40091711-40091730 None:intergenic 30.0%
GAAATACAATTACTTTGTGG+TGG - chr2_3:40091749-40091768 Msa0291490:intron 30.0%
! AATTACTTTGTGGTGGAAAT+GGG - chr2_3:40091756-40091775 Msa0291490:intron 30.0%
! TCTCATTTAGCTTAGAGAAT+AGG - chr2_3:40091817-40091836 Msa0291490:intron 30.0%
GTCTTTAATAACAAAGGAAG+AGG + chr2_3:40091888-40091907 None:intergenic 30.0%
AGATAATGTTAGGAAGTTAG+TGG - chr2_3:40092068-40092087 Msa0291490:five_prime_UTR 30.0%
! TAGTGGTTATGTTAGTTTAC+AGG - chr2_3:40092085-40092104 Msa0291490:five_prime_UTR 30.0%
! AGTGGTTATGTTAGTTTACA+GGG - chr2_3:40092086-40092105 Msa0291490:five_prime_UTR 30.0%
ATATCTTCAAACCTTTGCCA+AGG + chr2_3:40089929-40089948 None:intergenic 35.0%
TCTTGTGCATATGAAATGGA+TGG + chr2_3:40089958-40089977 None:intergenic 35.0%
! GCTCGTAGATGATTGTATTT+TGG - chr2_3:40090120-40090139 Msa0291490:CDS 35.0%
CTTAATGATTCCATGCTATC+AGG - chr2_3:40090173-40090192 Msa0291490:CDS 35.0%
ACATAACTATCCTGATAGCA+TGG + chr2_3:40090186-40090205 None:intergenic 35.0%
ATGCTATCAGGATAGTTATG+TGG - chr2_3:40090185-40090204 Msa0291490:CDS 35.0%
GTCCATAAACTATACTCTCA+GGG - chr2_3:40090312-40090331 Msa0291490:intron 35.0%
TGACAAATAGTTTAGGGACT+AGG - chr2_3:40090403-40090422 Msa0291490:intron 35.0%
AACAATAGTTGAGCAAAAGG+AGG + chr2_3:40090493-40090512 None:intergenic 35.0%
! TCCTTTTGCTCAACTATTGT+TGG - chr2_3:40090492-40090511 Msa0291490:intron 35.0%
TCCAACAATAGTTGAGCAAA+AGG + chr2_3:40090496-40090515 None:intergenic 35.0%
GCTACAGAGCATAAAACTAA+GGG + chr2_3:40090545-40090564 None:intergenic 35.0%
TCTATAGCTTCTTGGTCTAA+TGG + chr2_3:40090808-40090827 None:intergenic 35.0%
ATTAGACCAAGAAGCTATAG+AGG - chr2_3:40090807-40090826 Msa0291490:intron 35.0%
TTTACTCCTCTATAGCTTCT+TGG + chr2_3:40090816-40090835 None:intergenic 35.0%
ACTTGATCAATGGTTCACTT+AGG - chr2_3:40090838-40090857 Msa0291490:intron 35.0%
GAAAGCAATATGCATATCAG+AGG + chr2_3:40090943-40090962 None:intergenic 35.0%
TATTGAAAATCATCCGAAGC+TGG - chr2_3:40091284-40091303 Msa0291490:intron 35.0%
TGACGATATAAAATCCACAG+TGG - chr2_3:40091320-40091339 Msa0291490:intron 35.0%
AATTGCAGAGAAATCCATTC+CGG + chr2_3:40091355-40091374 None:intergenic 35.0%
! TATAATGTCTGAGACTTTGG+TGG + chr2_3:40091418-40091437 None:intergenic 35.0%
ATGTAATAAATCGTCGTCCT+CGG - chr2_3:40091493-40091512 Msa0291490:intron 35.0%
ATGTACTTCCTCCAAAGTAT+TGG - chr2_3:40091555-40091574 Msa0291490:intron 35.0%
GACACTACATGATAGCAAAT+GGG + chr2_3:40091604-40091623 None:intergenic 35.0%
AAAACAGCTGAGGAAATCTT+CGG + chr2_3:40091701-40091720 None:intergenic 35.0%
GCCGAAATACAATTACTTTG+TGG - chr2_3:40091746-40091765 Msa0291490:intron 35.0%
! CAATTACTTTGTGGTGGAAA+TGG - chr2_3:40091755-40091774 Msa0291490:intron 35.0%
! ATTACTTTGTGGTGGAAATG+GGG - chr2_3:40091757-40091776 Msa0291490:intron 35.0%
GGATTAAACCTCGACATAAA+CGG - chr2_3:40091838-40091857 Msa0291490:intron 35.0%
ACATAAACGGTGTGTAGAAA+TGG - chr2_3:40091851-40091870 Msa0291490:intron 35.0%
CATAAACGGTGTGTAGAAAT+GGG - chr2_3:40091852-40091871 Msa0291490:intron 35.0%
! CACAAAGGAGATGTTTTCAA+GGG + chr2_3:40091963-40091982 None:intergenic 35.0%
TGGTATCAAAATCTGAGCTA+AGG + chr2_3:40092152-40092171 None:intergenic 35.0%
! AATGGGTAACAGTGTTGAGA+TGG + chr2_3:40089307-40089326 None:intergenic 40.0%
TCTGCAAACCCTTTCATTCT+AGG - chr2_3:40089475-40089494 Msa0291490:CDS 40.0%
CTGCAAACCCTTTCATTCTA+GGG - chr2_3:40089476-40089495 Msa0291490:CDS 40.0%
GTAGGAACCCTAGAATGAAA+GGG + chr2_3:40089486-40089505 None:intergenic 40.0%
AGTAGGAACCCTAGAATGAA+AGG + chr2_3:40089487-40089506 None:intergenic 40.0%
GAATGGAAGGAAATGGAAGT+AGG + chr2_3:40089504-40089523 None:intergenic 40.0%
TCGTGAAGAATGGAAGGAAA+TGG + chr2_3:40089511-40089530 None:intergenic 40.0%
TACCTTCTTTGTCAGAGCTA+CGG - chr2_3:40089533-40089552 Msa0291490:CDS 40.0%
! AATGCTCTAGTTTGGCTGTT+TGG - chr2_3:40089840-40089859 Msa0291490:CDS 40.0%
! ATGCTCTAGTTTGGCTGTTT+GGG - chr2_3:40089841-40089860 Msa0291490:CDS 40.0%
AAGACATTGTAGGTTGTCCT+TGG - chr2_3:40089909-40089928 Msa0291490:CDS 40.0%
TTGTGTTCTTTGCCTCTTGA+AGG - chr2_3:40090022-40090041 Msa0291490:CDS 40.0%
CTTTGCCTCTTGAAGGATTA+AGG - chr2_3:40090029-40090048 Msa0291490:CDS 40.0%
TGGTGAGAGAGTGATAGTTT+AGG + chr2_3:40090258-40090277 None:intergenic 40.0%
GGTCCATAAACTATACTCTC+AGG - chr2_3:40090311-40090330 Msa0291490:intron 40.0%
! GTCCCTGAGAGTATAGTTTA+TGG + chr2_3:40090317-40090336 None:intergenic 40.0%
CGCTACAGAGCATAAAACTA+AGG + chr2_3:40090546-40090565 None:intergenic 40.0%
ATCCTCCGTCGAAAGAATAA+GGG + chr2_3:40090575-40090594 None:intergenic 40.0%
GTAGTCAGTATAGGATGGAT+GGG + chr2_3:40090968-40090987 None:intergenic 40.0%
AGTAGTCAGTATAGGATGGA+TGG + chr2_3:40090969-40090988 None:intergenic 40.0%
ACTCAGTAGTCAGTATAGGA+TGG + chr2_3:40090973-40090992 None:intergenic 40.0%
GGATACTCAGTAGTCAGTAT+AGG + chr2_3:40090977-40090996 None:intergenic 40.0%
! CTGTAATACATCAGAAGCAC+AGG + chr2_3:40091157-40091176 None:intergenic 40.0%
CTGTGCTTCTGATGTATTAC+AGG - chr2_3:40091155-40091174 Msa0291490:intron 40.0%
TTGGGAGGTAGAGTTTGATT+TGG + chr2_3:40091198-40091217 None:intergenic 40.0%
TGGAAACCAGTATCAGTGTT+GGG + chr2_3:40091216-40091235 None:intergenic 40.0%
TTGGAAACCAGTATCAGTGT+TGG + chr2_3:40091217-40091236 None:intergenic 40.0%
TCCACAGTGGAATACATTAC+CGG - chr2_3:40091333-40091352 Msa0291490:intron 40.0%
AGTGGAATACATTACCGGAA+TGG - chr2_3:40091338-40091357 Msa0291490:intron 40.0%
! ACTTTGGTGGTAAGAATCTC+CGG + chr2_3:40091405-40091424 None:intergenic 40.0%
! GGGTATAATGTCTGAGACTT+TGG + chr2_3:40091421-40091440 None:intergenic 40.0%
ACATTGCAAATGATCAACCG+AGG + chr2_3:40091513-40091532 None:intergenic 40.0%
! CTTTGGAGGAAGTACATAGT+AGG + chr2_3:40091552-40091571 None:intergenic 40.0%
CTTCTATGCCAATACTTTGG+AGG + chr2_3:40091566-40091585 None:intergenic 40.0%
CCTCTTCTATGCCAATACTT+TGG + chr2_3:40091569-40091588 None:intergenic 40.0%
!! CCAAAGTATTGGCATAGAAG+AGG - chr2_3:40091566-40091585 Msa0291490:intron 40.0%
CGACACTACATGATAGCAAA+TGG + chr2_3:40091605-40091624 None:intergenic 40.0%
! CCACAAAGGAGATGTTTTCA+AGG + chr2_3:40091964-40091983 None:intergenic 40.0%
CCTTGAAAACATCTCCTTTG+TGG - chr2_3:40091961-40091980 Msa0291490:CDS 40.0%
!!! ACACCAAAGGAGTTTTAAGC+AGG + chr2_3:40092128-40092147 None:intergenic 40.0%
! GTGATGTGAAGTGGTTGTTT+TGG + chr2_3:40092172-40092191 None:intergenic 40.0%
AACGGAGATTGGAGAAGTGA+TGG + chr2_3:40089268-40089287 None:intergenic 45.0%
!! GTGTGTTCTAGAACGGAGAT+TGG + chr2_3:40089279-40089298 None:intergenic 45.0%
! GGTAACAGTGTTGAGATGGT+GGG + chr2_3:40089303-40089322 None:intergenic 45.0%
!! GTGGCAGAACACATTTTGGT+TGG + chr2_3:40089399-40089418 None:intergenic 45.0%
! AGCAGTGGCAGAACACATTT+TGG + chr2_3:40089403-40089422 None:intergenic 45.0%
!! AAACAAGGGTGTTGTAGCAG+TGG + chr2_3:40089418-40089437 None:intergenic 45.0%
TGGTGATCGGTGGAAAACAA+GGG + chr2_3:40089432-40089451 None:intergenic 45.0%
GGATTTGGGAATGTGGTGAT+CGG + chr2_3:40089445-40089464 None:intergenic 45.0%
GAGTGAAGGATTTGGGAATG+TGG + chr2_3:40089452-40089471 None:intergenic 45.0%
CAGAGACGAGTGAAGGATTT+GGG + chr2_3:40089459-40089478 None:intergenic 45.0%
AGAAGGTAGGTCGTGAAGAA+TGG + chr2_3:40089521-40089540 None:intergenic 45.0%
!! GTAGCTCTGACAAAGAAGGT+AGG + chr2_3:40089534-40089553 None:intergenic 45.0%
!! AACCGTAGCTCTGACAAAGA+AGG + chr2_3:40089538-40089557 None:intergenic 45.0%
TTGTAGGTTGTCCTTGGCAA+AGG - chr2_3:40089915-40089934 Msa0291490:CDS 45.0%
TGGACAACATTGCTACCCTT+TGG - chr2_3:40090140-40090159 Msa0291490:CDS 45.0%
ACTCTCAGGGACCAAATTGA+TGG - chr2_3:40090325-40090344 Msa0291490:intron 45.0%
TGCGACCCTTATTCTTTCGA+CGG - chr2_3:40090567-40090586 Msa0291490:intron 45.0%
CATCCTCCGTCGAAAGAATA+AGG + chr2_3:40090576-40090595 None:intergenic 45.0%
TCCTCGTGATATCAGTTCTC+TGG - chr2_3:40090912-40090931 Msa0291490:intron 45.0%
ACCAGAGAACTGATATCACG+AGG + chr2_3:40090916-40090935 None:intergenic 45.0%
! AAACCAGTATCAGTGTTGGG+AGG + chr2_3:40091213-40091232 None:intergenic 45.0%
TCCGGTAATGTATTCCACTG+TGG + chr2_3:40091337-40091356 None:intergenic 45.0%
TGCAATTGAGTTTCGGCGTT+TGG - chr2_3:40091368-40091387 Msa0291490:intron 45.0%
ATTGAGTTTCGGCGTTTGGT+TGG - chr2_3:40091372-40091391 Msa0291490:intron 45.0%
! CTTTGGTGGTAAGAATCTCC+GGG + chr2_3:40091404-40091423 None:intergenic 45.0%
TTACACGAACTTCTCGGTGA+AGG + chr2_3:40091455-40091474 None:intergenic 45.0%
AGCCACTTACACGAACTTCT+CGG + chr2_3:40091461-40091480 None:intergenic 45.0%
GGAACATCGATGTAGTGTCA+CGG + chr2_3:40091680-40091699 None:intergenic 45.0%
GGAAATGGGGAGAGATTTGA+AGG - chr2_3:40091770-40091789 Msa0291490:intron 45.0%
AATGGGGAGAGATTTGAAGG+AGG - chr2_3:40091773-40091792 Msa0291490:intron 45.0%
TCTACACACCGTTTATGTCG+AGG + chr2_3:40091849-40091868 None:intergenic 45.0%
!!! CCAAAGGAGTTTTAAGCAGG+AGG + chr2_3:40092125-40092144 None:intergenic 45.0%
CCTCCTGCTTAAAACTCCTT+TGG - chr2_3:40092122-40092141 Msa0291490:five_prime_UTR 45.0%
TCTGAGCTAAGGAACACCAA+AGG + chr2_3:40092141-40092160 None:intergenic 45.0%
!! GGTGGGAGTGTGTTCTAGAA+CGG + chr2_3:40089286-40089305 None:intergenic 50.0%
! GGGTAACAGTGTTGAGATGG+TGG + chr2_3:40089304-40089323 None:intergenic 50.0%
GTGGTGATCGGTGGAAAACA+AGG + chr2_3:40089433-40089452 None:intergenic 50.0%
TTTGGGAATGTGGTGATCGG+TGG + chr2_3:40089442-40089461 None:intergenic 50.0%
GCAGAGACGAGTGAAGGATT+TGG + chr2_3:40089460-40089479 None:intergenic 50.0%
GGTAGGTCGTGAAGAATGGA+AGG + chr2_3:40089517-40089536 None:intergenic 50.0%
GACCCTTATTCTTTCGACGG+AGG - chr2_3:40090570-40090589 Msa0291490:intron 50.0%
CTACCTCCCAACACTGATAC+TGG - chr2_3:40091207-40091226 Msa0291490:intron 50.0%
AGTGACGCAGTAACCAGCTT+CGG + chr2_3:40091300-40091319 None:intergenic 50.0%
TCGGTGAAGGAACGTGAAGA+CGG + chr2_3:40091442-40091461 None:intergenic 50.0%
CACCGAGAAGTTCGTGTAAG+TGG - chr2_3:40091456-40091475 Msa0291490:intron 50.0%
ACATCTCCTTTGTGGTGTGC+TGG - chr2_3:40091969-40091988 Msa0291490:CDS 50.0%
GGGTTTGCAGAGACGAGTGA+AGG + chr2_3:40089466-40089485 None:intergenic 55.0%
CGGTGAAGGAACGTGAAGAC+GGG + chr2_3:40091441-40091460 None:intergenic 55.0%
GCGTTTGGTTGGCATGTGCC+CGG - chr2_3:40091383-40091402 Msa0291490:intron 60.0%
TCACGGCCAGCACACCACAA+AGG + chr2_3:40091978-40091997 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 40089260 40092195 40089260 ID=Msa0291490;Name=Msa0291490
chr2_3 mRNA 40089260 40092195 40089260 ID=Msa0291490-mRNA-1;Parent=Msa0291490;Name=Msa0291490-mRNA-1;_AED=0.13;_eAED=0.13;_QI=145|1|1|1|1|1|2|182|328
chr2_3 exon 40089260 40090278 40089260 ID=Msa0291490-mRNA-1:exon:12874;Parent=Msa0291490-mRNA-1
chr2_3 exon 40091901 40092195 40091901 ID=Msa0291490-mRNA-1:exon:12873;Parent=Msa0291490-mRNA-1
chr2_3 five_prime_UTR 40092051 40092195 40092051 ID=Msa0291490-mRNA-1:five_prime_utr;Parent=Msa0291490-mRNA-1
chr2_3 CDS 40091901 40092050 40091901 ID=Msa0291490-mRNA-1:cds;Parent=Msa0291490-mRNA-1
chr2_3 CDS 40089442 40090278 40089442 ID=Msa0291490-mRNA-1:cds;Parent=Msa0291490-mRNA-1
chr2_3 three_prime_UTR 40089260 40089441 40089260 ID=Msa0291490-mRNA-1:three_prime_utr;Parent=Msa0291490-mRNA-1
Gene Sequence

>Msa0291490

ATGTGTTCTGCCACTGCTACAACACCCTTGTTTTCCACCGATCACCACATTCCCAAATCCTTCACTCGTCTCTGCAAACCCTTTCATTCTAGGGTTCCTACTTCCATTTCCTTCCATTCTTCACGACCTACCTTCTTTGTCAGAGCTACGGTTGTAAAATGGCGATGTCCAAATCAAACTCTACCTCCCAACACTGATACTGGTTTCCAAAAAAAGGTCTTGTATCTAGAATCTATCGGTATTGACTCTTTCTCATTTATTGAAAATCATCCGAAGCTGGTTACTGCGTCACTTGACGATATAAAATCCACAGTGGAATACATTACCGGAATGGATTTCTCTGCAATTGAGTTTCGGCGTTTGGTTGGCATGTGCCCGGAGATTCTTACCACCAAAGTCTCAGACATTATACCCGTCTTCACGTTCCTTCACCGAGAAGTTCGTGTAAGTGGCTCAAATATCAAGCATGTAATAAATCGTCGTCCTCGGTTGATCATTTGCAATGTTGATAAGCAACTTCGTCCTACTATGTACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAGCACACCCATTTGCTATCATGTAGTGTCGAAGACAAGTTTATACCCCGAATTGAATACTTTGAAAATATTGGATTCTCTCGCCGTGACACTACATCGATGTTCCGAAGATTTCCTCAGCTGTTTTGTTATAGTATTAAGAATAATTTGGAGCCGAAATACAATTACTTTGTGGTGGAAATGGGGAGAGATTTGAAGGAGGTGAAAGAATTTCCTCATTATTTCTCATTTAGCTTAGAGAATAGGATTAAACCTCGACATAAACGGTGTGTAGAAATGGGTGTGTGTTTTCCTCTTCCTTTGTTATTAAAGACTAGTGAAGTTGCATTTCAGAATAGATTAGAAGCATTTGTAAATTCTTCAACACCCTTGAAAACATCTCCTTTGTGGTGTGCTGGCCGTGATATTGATCAAGTATAG

Protein sequence

>Msa0291490

MCSATATTPLFSTDHHIPKSFTRLCKPFHSRVPTSISFHSSRPTFFVRATVVKWRCPNQTLPPNTDTGFQKKVLYLESIGIDSFSFIENHPKLVTASLDDIKSTVEYITGMDFSAIEFRRLVGMCPEILTTKVSDIIPVFTFLHREVRVSGSNIKHVINRRPRLIICNVDKQLRPTMYFLQSIGIEEVNKHTHLLSCSVEDKFIPRIEYFENIGFSRRDTTSMFRRFPQLFCYSIKNNLEPKYNYFVVEMGRDLKEVKEFPHYFSFSLENRIKPRHKRCVEMGVCFPLPLLLKTSEVAFQNRLEAFVNSSTPLKTSPLWCAGRDIDQV*