AlfalfaGEDB | Msa0409070

M. sativa cultivar zhongmu-4 / Msa0409070

KEGG: -
GO: GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01151.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0409070	XP_003626313.1	95.131	267	12	1	2	267	7	273	1.44e-155	444

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0409070	sp\|Q9SYY4\|ELO3L_ARATH	28.223	287	176	8	4	267	9	288	1.18e-27	110

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0409070	Q2HTN1	95.131	267	12	1	2	267	7	273	6.86e-156	444

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0075080	Msa0409070	0.800769	1.233957e-48	-8.615850e-47
Msa0127120	Msa0409070	0.817179	3.770477e-52	-8.615850e-47
Msa0138680	Msa0409070	0.813261	2.799031e-51	-8.615850e-47
Msa0167570	Msa0409070	0.800672	1.291493e-48	-8.615850e-47
Msa0380270	Msa0409070	0.805398	1.360632e-49	-8.615850e-47
Msa0409070	Msa0502010	0.877822	4.615230e-69	-8.615850e-47
Msa0409070	Msa0524470	0.813702	2.239178e-51	-8.615850e-47
Msa0409070	Msa1079720	0.828288	9.769003e-55	-8.615850e-47
Msa0409070	Msa1080610	0.808540	2.945468e-50	-8.615850e-47
Msa0409070	Msa1080680	0.807713	4.419573e-50	-8.615850e-47
Msa0409070	Msa1091400	0.802903	4.498497e-49	-8.615850e-47
Msa0409070	Msa1124530	0.825569	4.365155e-54	-8.615850e-47
Msa0409070	Msa1164720	0.813541	2.429759e-51	-8.615850e-47
Msa0409070	Msa1167150	0.804917	1.716226e-49	-8.615850e-47
Msa0409070	Msa1168050	0.800165	1.638136e-48	-8.615850e-47
Msa0409070	Msa1325560	0.802749	4.839504e-49	-8.615850e-47
Msa0409070	Msa1367560	0.814412	1.561373e-51	-8.615850e-47
Msa0409070	Msa1376680	0.825255	5.178919e-54	-8.615850e-47
Msa0255770	Msa0409070	0.817638	2.973157e-52	-8.615850e-47
Msa0361540	Msa0409070	0.979283	1.247436e-147	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0409070	MtrunA17_Chr7g0273031	95.131	267	12	1	2	267	7	273	1.32e-159	444
Msa0409070	MtrunA17_Chr8g0373641	33.453	278	168	3	4	266	16	291	5.13e-40	140
Msa0409070	MtrunA17_Chr3g0141331	32.746	284	166	5	2	267	13	289	1.14e-39	139
Msa0409070	MtrunA17_Chr5g0403531	32.979	282	168	5	1	267	8	283	9.08e-37	132
Msa0409070	MtrunA17_Chr1g0154571	26.786	280	151	7	2	264	7	249	1.05e-17	80.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0409070	AT3G06470.1	56.934	274	105	5	4	267	8	278	2.03e-98	290
Msa0409070	AT3G06460.1	51.145	262	117	5	4	257	8	266	2.91e-84	254
Msa0409070	AT1G75000.1	31.186	295	157	6	1	264	1	280	2.94e-38	135
Msa0409070	AT4G36830.1	28.223	287	176	8	4	267	9	288	1.20e-28	110
Msa0409070	AT4G36830.2	29.183	257	154	7	4	239	9	258	1.86e-23	97.4

Find 98 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAAATGGTCCCTTCTTCTTT+TGG	0.191059	3_2:+49387613	Msa0409070:CDS
TCCGGTGGTGGTGGATGCTC+TGG	0.244745	3_2:+49387966	Msa0409070:CDS
CTCCATCCTCTCCCTCATTA+TGG	0.310997	3_2:+49387512	Msa0409070:CDS
GAGAGTGAGGGAGAGATAAA+AGG	0.313559	3_2:-49387415	None:intergenic
CATGTGAAATTTAGAATGTT+TGG	0.317423	3_2:-49387339	None:intergenic
CTCTCCCTCATTATGGCTAT+TGG	0.337974	3_2:+49387519	Msa0409070:CDS
GGATAGGTGGGAGAGGGAAG+AGG	0.353829	3_2:-49387443	None:intergenic
TCCCAATCATGTGTTATCTA+TGG	0.356723	3_2:+49387748	Msa0409070:CDS
GGATGGAGAGGATGAGGTTG+TGG	0.388690	3_2:-49387497	None:intergenic
GTGGGAGAGGGAAGAGGAGA+AGG	0.389465	3_2:-49387437	None:intergenic
GGAGGTTAGGAGTGTGGGTT+AGG	0.392757	3_2:-49387557	None:intergenic
GAGTTGGTAAGAAGTGCAAT+AGG	0.397860	3_2:-49387795	None:intergenic
CTTTATTATCACTTCGGATC+CGG	0.398177	3_2:+49387948	Msa0409070:CDS
TGGTGGATGCTCTGGGATGA+AGG	0.407237	3_2:+49387974	Msa0409070:CDS
CAGATGGTGGAGCGGAGGTT+AGG	0.414087	3_2:-49387570	None:intergenic
GTTAGGAGTGTGGGTTAGGA+TGG	0.422091	3_2:-49387553	None:intergenic
GAGGAATGAGAGACGTTTGA+TGG	0.423143	3_2:-49387703	None:intergenic
GAGGTTGTGGAGTGCGGTGA+AGG	0.426675	3_2:-49387484	None:intergenic
GGAAGTGAGGTGGGATAGGT+GGG	0.431318	3_2:-49387455	None:intergenic
GATGCTCTGGGATGAAGGCT+TGG	0.437263	3_2:+49387979	Msa0409070:CDS
AGCCATAGATAACACATGAT+TGG	0.439169	3_2:-49387750	None:intergenic
AGGAAGTGAGGTGGGATAGG+TGG	0.440874	3_2:-49387456	None:intergenic
GGAAGAGGAGAAGGAGAGTG+AGG	0.444740	3_2:-49387428	None:intergenic
CACTTCGGATCCGGTGGTGG+TGG	0.447681	3_2:+49387957	Msa0409070:CDS
TTGAGGAAGTGAGGTGGGAT+AGG	0.449819	3_2:-49387459	None:intergenic
GGGAGAGGATGGAGAGGATG+AGG	0.450488	3_2:-49387503	None:intergenic
GCCATAGATAACACATGATT+GGG	0.452793	3_2:-49387749	None:intergenic
TGGAAAGAGAGAGGAACAAA+AGG	0.460332	3_2:-49387389	None:intergenic
GGACCATTTCGAGGGGTATG+AGG	0.467899	3_2:-49387600	None:intergenic
CCGGTGGTGGTGGATGCTCT+GGG	0.474001	3_2:+49387967	Msa0409070:CDS
TGAACACGAACTGAACAATC+TGG	0.475700	3_2:-49387902	None:intergenic
TACTACTTCCTCACCACTGT+TGG	0.476064	3_2:+49387843	Msa0409070:CDS
TGGAGCGGAGGTTAGGAGTG+TGG	0.479715	3_2:-49387563	None:intergenic
CTCATGCTTTATTATCACTT+CGG	0.480515	3_2:+49387942	Msa0409070:CDS
GTGGGTTAGGATGGTGAGGG+AGG	0.481729	3_2:-49387544	None:intergenic
GGAGCGGAGGTTAGGAGTGT+GGG	0.485741	3_2:-49387562	None:intergenic
AGTTGGTAAGAAGTGCAATA+GGG	0.487218	3_2:-49387794	None:intergenic
TATCACTTCGGATCCGGTGG+TGG	0.497768	3_2:+49387954	Msa0409070:CDS
AGGAACAAAAGGGATGAGGC+TGG	0.499237	3_2:-49387378	None:intergenic
GAGGTGGGATAGGTGGGAGA+GGG	0.500599	3_2:-49387449	None:intergenic
GTGATAATAAAGCATGAGAC+AGG	0.502322	3_2:-49387937	None:intergenic
GATGAGGCTGGAGTGTGAGG+AGG	0.502414	3_2:-49387366	None:intergenic
TGAGGTGGGATAGGTGGGAG+AGG	0.507625	3_2:-49387450	None:intergenic
GAGGGAGAGATAAAAGGCTA+TGG	0.508066	3_2:-49387409	None:intergenic
GAAGAGGAGAAGGAGAGTGA+GGG	0.511361	3_2:-49387427	None:intergenic
GATGTAGGCCCAAAAGAAGA+AGG	0.519086	3_2:-49387622	None:intergenic
GAGGGAAGCAGATGGTGGAG+CGG	0.519215	3_2:-49387578	None:intergenic
CCCAGAGCATCCACCACCAC+CGG	0.521985	3_2:-49387967	None:intergenic
CCTCCTCATACCCCTCGAAA+TGG	0.522361	3_2:+49387597	Msa0409070:CDS
GAATGGAAATCCTTCAACAT+TGG	0.526354	3_2:+49387304	None:intergenic
AGCCATAATGAGGGAGAGGA+TGG	0.527649	3_2:-49387514	None:intergenic
GAGTGTGGGTTAGGATGGTG+AGG	0.530952	3_2:-49387548	None:intergenic
TCGGTAACGACGCGTTTCCA+CGG	0.536456	3_2:-49387876	None:intergenic
GGTAAACTAGCCAATGTTGA+AGG	0.541678	3_2:-49387314	None:intergenic
AGGGTTTGAGGAAGTGAGGT+GGG	0.545949	3_2:-49387464	None:intergenic
ATGAGGCTGGAGTGTGAGGA+GGG	0.554548	3_2:-49387365	None:intergenic
GGAGTGCGGTGAAGGGTTTG+AGG	0.557377	3_2:-49387476	None:intergenic
AAGAAGAAGGGACCATTTCG+AGG	0.558869	3_2:-49387609	None:intergenic
GGAAAGAGAGAGGAACAAAA+GGG	0.565658	3_2:-49387388	None:intergenic
CAATAGCCATAATGAGGGAG+AGG	0.566959	3_2:-49387518	None:intergenic
AGGGATGAGGCTGGAGTGTG+AGG	0.567634	3_2:-49387369	None:intergenic
AGGTGCCAATAGCCATAATG+AGG	0.568133	3_2:-49387524	None:intergenic
GACGTTTGATGGATCTTGAG+AGG	0.571177	3_2:-49387692	None:intergenic
TGATTGGGACGGTGGAATGA+TGG	0.571858	3_2:-49387734	None:intergenic
GTGAAGGGTTTGAGGAAGTG+AGG	0.573391	3_2:-49387468	None:intergenic
AGGTTGTGGAGTGCGGTGAA+GGG	0.575003	3_2:-49387483	None:intergenic
CAAACATTCTAAATTTCACA+TGG	0.578086	3_2:+49387340	Msa0409070:CDS
TGAAATTTAGAATGTTTGGA+TGG	0.579054	3_2:-49387335	None:intergenic
AAGGGTTTGAGGAAGTGAGG+TGG	0.580580	3_2:-49387465	None:intergenic
TATTATCACTTCGGATCCGG+TGG	0.582897	3_2:+49387951	Msa0409070:CDS
CCATTTCGAGGGGTATGAGG+AGG	0.582905	3_2:-49387597	None:intergenic
GGTATGAGGAGGGAAGCAGA+TGG	0.584509	3_2:-49387586	None:intergenic
CGACGCGTTTCCACGGCGGT+CGG	0.590079	3_2:-49387869	None:intergenic
GGAAGCAGATGGTGGAGCGG+AGG	0.590296	3_2:-49387575	None:intergenic
GAGGATGAGGTTGTGGAGTG+CGG	0.590535	3_2:-49387490	None:intergenic
AGAGAGGAACAAAAGGGATG+AGG	0.592520	3_2:-49387382	None:intergenic
AGAAGAAGGGACCATTTCGA+GGG	0.594281	3_2:-49387608	None:intergenic
CATTTCGAGGGGTATGAGGA+GGG	0.596088	3_2:-49387596	None:intergenic
ATGAGGAGGGAAGCAGATGG+TGG	0.597449	3_2:-49387583	None:intergenic
ATAACACATGATTGGGACGG+TGG	0.620196	3_2:-49387742	None:intergenic
AAAAGGCTATGGAAAGAGAG+AGG	0.627374	3_2:-49387398	None:intergenic
GTCGGATTCCAACAGTGGTG+AGG	0.628146	3_2:-49387851	None:intergenic
CGGTGGAATGATGGTACACG+TGG	0.631074	3_2:-49387725	None:intergenic
ATGTAGGCCCAAAAGAAGAA+GGG	0.632371	3_2:-49387621	None:intergenic
AGTGTGGGTTAGGATGGTGA+GGG	0.632987	3_2:-49387547	None:intergenic
CGGCGGTCGGATTCCAACAG+TGG	0.641832	3_2:-49387856	None:intergenic
TAATGAGGGAGAGGATGGAG+AGG	0.644404	3_2:-49387509	None:intergenic
GATGACGTGGACGGATGAGT+TGG	0.645959	3_2:-49387811	None:intergenic
AGAGTACATGATGACGTGGA+CGG	0.658163	3_2:-49387820	None:intergenic
GAACTGAACAATCTGGCAGT+CGG	0.662736	3_2:-49387895	None:intergenic
ATAAAGCATGAGACAGGAGA+CGG	0.662875	3_2:-49387931	None:intergenic
TGGAATGATGGTACACGTGG+AGG	0.666407	3_2:-49387722	None:intergenic
TAGATAACACATGATTGGGA+CGG	0.671340	3_2:-49387745	None:intergenic
GGTGCCAATAGCCATAATGA+GGG	0.679843	3_2:-49387523	None:intergenic
AGTAAGAGTACATGATGACG+TGG	0.708386	3_2:-49387824	None:intergenic
GAAGAAGGGACCATTTCGAG+GGG	0.711845	3_2:-49387607	None:intergenic
CTGTTGGAATCCGACCGCCG+TGG	0.731632	3_2:+49387859	Msa0409070:CDS
GTAACGACGCGTTTCCACGG+CGG	0.765126	3_2:-49387873	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGAAATTTAGAATGTTTGGA+TGG	-	chr3_2:49387338-49387357	None:intergenic	25.0%
!!	CATGTGAAATTTAGAATGTT+TGG	-	chr3_2:49387342-49387361	None:intergenic	25.0%
!	CAAACATTCTAAATTTCACA+TGG	+	chr3_2:49387340-49387359	Msa0409070:CDS	25.0%
!!!	TGAATTCAAGATATTTTGAG+AGG	-	chr3_2:49387653-49387672	None:intergenic	25.0%
!!!	TGTTTTTAATGCTTCTCTTT+TGG	+	chr3_2:49388013-49388032	Msa0409070:CDS	25.0%
!!	TGAAATTTAGAATGTTTGGA+TGG	-	chr3_2:49387338-49387357	None:intergenic	25.0%
!!	CATGTGAAATTTAGAATGTT+TGG	-	chr3_2:49387342-49387361	None:intergenic	25.0%
!	CAAACATTCTAAATTTCACA+TGG	+	chr3_2:49387340-49387359	Msa0409070:CDS	25.0%
!!!	TGAATTCAAGATATTTTGAG+AGG	-	chr3_2:49387653-49387672	None:intergenic	25.0%
!!!	TGTTTTTAATGCTTCTCTTT+TGG	+	chr3_2:49388013-49388032	Msa0409070:CDS	25.0%
!	CTCATGCTTTATTATCACTT+CGG	+	chr3_2:49387942-49387961	Msa0409070:CDS	30.0%
!	CTCATGCTTTATTATCACTT+CGG	+	chr3_2:49387942-49387961	Msa0409070:CDS	30.0%
!	AAATGGTCCCTTCTTCTTTT+GGG	+	chr3_2:49387614-49387633	Msa0409070:CDS	35.0%
!!	TTTTGAGAGGTAGAAGATGT+AGG	-	chr3_2:49387640-49387659	None:intergenic	35.0%
	TAGATAACACATGATTGGGA+CGG	-	chr3_2:49387748-49387767	None:intergenic	35.0%
	TCCCAATCATGTGTTATCTA+TGG	+	chr3_2:49387748-49387767	Msa0409070:CDS	35.0%
	GCCATAGATAACACATGATT+GGG	-	chr3_2:49387752-49387771	None:intergenic	35.0%
	AGCCATAGATAACACATGAT+TGG	-	chr3_2:49387753-49387772	None:intergenic	35.0%
!!	AGTTGGTAAGAAGTGCAATA+GGG	-	chr3_2:49387797-49387816	None:intergenic	35.0%
	GTGATAATAAAGCATGAGAC+AGG	-	chr3_2:49387940-49387959	None:intergenic	35.0%
	CTTTATTATCACTTCGGATC+CGG	+	chr3_2:49387948-49387967	Msa0409070:CDS	35.0%
!	AAATGGTCCCTTCTTCTTTT+GGG	+	chr3_2:49387614-49387633	Msa0409070:CDS	35.0%
!!	TTTTGAGAGGTAGAAGATGT+AGG	-	chr3_2:49387640-49387659	None:intergenic	35.0%
	TAGATAACACATGATTGGGA+CGG	-	chr3_2:49387748-49387767	None:intergenic	35.0%
	TCCCAATCATGTGTTATCTA+TGG	+	chr3_2:49387748-49387767	Msa0409070:CDS	35.0%
	GCCATAGATAACACATGATT+GGG	-	chr3_2:49387752-49387771	None:intergenic	35.0%
	AGCCATAGATAACACATGAT+TGG	-	chr3_2:49387753-49387772	None:intergenic	35.0%
!!	AGTTGGTAAGAAGTGCAATA+GGG	-	chr3_2:49387797-49387816	None:intergenic	35.0%
	GTGATAATAAAGCATGAGAC+AGG	-	chr3_2:49387940-49387959	None:intergenic	35.0%
	CTTTATTATCACTTCGGATC+CGG	+	chr3_2:49387948-49387967	Msa0409070:CDS	35.0%
	GGTAAACTAGCCAATGTTGA+AGG	-	chr3_2:49387317-49387336	None:intergenic	40.0%
	GGAAAGAGAGAGGAACAAAA+GGG	-	chr3_2:49387391-49387410	None:intergenic	40.0%
	TGGAAAGAGAGAGGAACAAA+AGG	-	chr3_2:49387392-49387411	None:intergenic	40.0%
	AAAAGGCTATGGAAAGAGAG+AGG	-	chr3_2:49387401-49387420	None:intergenic	40.0%
!	GAAATGGTCCCTTCTTCTTT+TGG	+	chr3_2:49387613-49387632	Msa0409070:CDS	40.0%
	ATGTAGGCCCAAAAGAAGAA+GGG	-	chr3_2:49387624-49387643	None:intergenic	40.0%
!!	GAGTTGGTAAGAAGTGCAAT+AGG	-	chr3_2:49387798-49387817	None:intergenic	40.0%
!	AGTAAGAGTACATGATGACG+TGG	-	chr3_2:49387827-49387846	None:intergenic	40.0%
	TGAACACGAACTGAACAATC+TGG	-	chr3_2:49387905-49387924	None:intergenic	40.0%
	ATAAAGCATGAGACAGGAGA+CGG	-	chr3_2:49387934-49387953	None:intergenic	40.0%
	GGTAAACTAGCCAATGTTGA+AGG	-	chr3_2:49387317-49387336	None:intergenic	40.0%
	GGAAAGAGAGAGGAACAAAA+GGG	-	chr3_2:49387391-49387410	None:intergenic	40.0%
	TGGAAAGAGAGAGGAACAAA+AGG	-	chr3_2:49387392-49387411	None:intergenic	40.0%
	AAAAGGCTATGGAAAGAGAG+AGG	-	chr3_2:49387401-49387420	None:intergenic	40.0%
!	GAAATGGTCCCTTCTTCTTT+TGG	+	chr3_2:49387613-49387632	Msa0409070:CDS	40.0%
	ATGTAGGCCCAAAAGAAGAA+GGG	-	chr3_2:49387624-49387643	None:intergenic	40.0%
!!	GAGTTGGTAAGAAGTGCAAT+AGG	-	chr3_2:49387798-49387817	None:intergenic	40.0%
!	AGTAAGAGTACATGATGACG+TGG	-	chr3_2:49387827-49387846	None:intergenic	40.0%
	TGAACACGAACTGAACAATC+TGG	-	chr3_2:49387905-49387924	None:intergenic	40.0%
	ATAAAGCATGAGACAGGAGA+CGG	-	chr3_2:49387934-49387953	None:intergenic	40.0%
	AGAGAGGAACAAAAGGGATG+AGG	-	chr3_2:49387385-49387404	None:intergenic	45.0%
	GAGGGAGAGATAAAAGGCTA+TGG	-	chr3_2:49387412-49387431	None:intergenic	45.0%
	GAGAGTGAGGGAGAGATAAA+AGG	-	chr3_2:49387418-49387437	None:intergenic	45.0%
	CAATAGCCATAATGAGGGAG+AGG	-	chr3_2:49387521-49387540	None:intergenic	45.0%
	CTCTCCCTCATTATGGCTAT+TGG	+	chr3_2:49387519-49387538	Msa0409070:CDS	45.0%
	GGTGCCAATAGCCATAATGA+GGG	-	chr3_2:49387526-49387545	None:intergenic	45.0%
	AGGTGCCAATAGCCATAATG+AGG	-	chr3_2:49387527-49387546	None:intergenic	45.0%
	AGAAGAAGGGACCATTTCGA+GGG	-	chr3_2:49387611-49387630	None:intergenic	45.0%
	AAGAAGAAGGGACCATTTCG+AGG	-	chr3_2:49387612-49387631	None:intergenic	45.0%
	GATGTAGGCCCAAAAGAAGA+AGG	-	chr3_2:49387625-49387644	None:intergenic	45.0%
!	GACGTTTGATGGATCTTGAG+AGG	-	chr3_2:49387695-49387714	None:intergenic	45.0%
	GAGGAATGAGAGACGTTTGA+TGG	-	chr3_2:49387706-49387725	None:intergenic	45.0%
	ATAACACATGATTGGGACGG+TGG	-	chr3_2:49387745-49387764	None:intergenic	45.0%
!	AGAGTACATGATGACGTGGA+CGG	-	chr3_2:49387823-49387842	None:intergenic	45.0%
	TACTACTTCCTCACCACTGT+TGG	+	chr3_2:49387843-49387862	Msa0409070:CDS	45.0%
	GAACTGAACAATCTGGCAGT+CGG	-	chr3_2:49387898-49387917	None:intergenic	45.0%
	TATTATCACTTCGGATCCGG+TGG	+	chr3_2:49387951-49387970	Msa0409070:CDS	45.0%
	AGAGAGGAACAAAAGGGATG+AGG	-	chr3_2:49387385-49387404	None:intergenic	45.0%
	GAGGGAGAGATAAAAGGCTA+TGG	-	chr3_2:49387412-49387431	None:intergenic	45.0%
	GAGAGTGAGGGAGAGATAAA+AGG	-	chr3_2:49387418-49387437	None:intergenic	45.0%
	CAATAGCCATAATGAGGGAG+AGG	-	chr3_2:49387521-49387540	None:intergenic	45.0%
	CTCTCCCTCATTATGGCTAT+TGG	+	chr3_2:49387519-49387538	Msa0409070:CDS	45.0%
	GGTGCCAATAGCCATAATGA+GGG	-	chr3_2:49387526-49387545	None:intergenic	45.0%
	AGGTGCCAATAGCCATAATG+AGG	-	chr3_2:49387527-49387546	None:intergenic	45.0%
	AGAAGAAGGGACCATTTCGA+GGG	-	chr3_2:49387611-49387630	None:intergenic	45.0%
	AAGAAGAAGGGACCATTTCG+AGG	-	chr3_2:49387612-49387631	None:intergenic	45.0%
	GATGTAGGCCCAAAAGAAGA+AGG	-	chr3_2:49387625-49387644	None:intergenic	45.0%
!	GACGTTTGATGGATCTTGAG+AGG	-	chr3_2:49387695-49387714	None:intergenic	45.0%
	GAGGAATGAGAGACGTTTGA+TGG	-	chr3_2:49387706-49387725	None:intergenic	45.0%
	ATAACACATGATTGGGACGG+TGG	-	chr3_2:49387745-49387764	None:intergenic	45.0%
!	AGAGTACATGATGACGTGGA+CGG	-	chr3_2:49387823-49387842	None:intergenic	45.0%
	TACTACTTCCTCACCACTGT+TGG	+	chr3_2:49387843-49387862	Msa0409070:CDS	45.0%
	GAACTGAACAATCTGGCAGT+CGG	-	chr3_2:49387898-49387917	None:intergenic	45.0%
	TATTATCACTTCGGATCCGG+TGG	+	chr3_2:49387951-49387970	Msa0409070:CDS	45.0%
	AGGAACAAAAGGGATGAGGC+TGG	-	chr3_2:49387381-49387400	None:intergenic	50.0%
	GAAGAGGAGAAGGAGAGTGA+GGG	-	chr3_2:49387430-49387449	None:intergenic	50.0%
	TTGAGGAAGTGAGGTGGGAT+AGG	-	chr3_2:49387462-49387481	None:intergenic	50.0%
	AGGGTTTGAGGAAGTGAGGT+GGG	-	chr3_2:49387467-49387486	None:intergenic	50.0%
	AAGGGTTTGAGGAAGTGAGG+TGG	-	chr3_2:49387468-49387487	None:intergenic	50.0%
	GTGAAGGGTTTGAGGAAGTG+AGG	-	chr3_2:49387471-49387490	None:intergenic	50.0%
	TAATGAGGGAGAGGATGGAG+AGG	-	chr3_2:49387512-49387531	None:intergenic	50.0%
	CTCCATCCTCTCCCTCATTA+TGG	+	chr3_2:49387512-49387531	Msa0409070:CDS	50.0%
	AGCCATAATGAGGGAGAGGA+TGG	-	chr3_2:49387517-49387536	None:intergenic	50.0%
!!	AGTGTGGGTTAGGATGGTGA+GGG	-	chr3_2:49387550-49387569	None:intergenic	50.0%
!!	GTTAGGAGTGTGGGTTAGGA+TGG	-	chr3_2:49387556-49387575	None:intergenic	50.0%
!	CATTTCGAGGGGTATGAGGA+GGG	-	chr3_2:49387599-49387618	None:intergenic	50.0%
	GAAGAAGGGACCATTTCGAG+GGG	-	chr3_2:49387610-49387629	None:intergenic	50.0%
	TGGAATGATGGTACACGTGG+AGG	-	chr3_2:49387725-49387744	None:intergenic	50.0%
	TGATTGGGACGGTGGAATGA+TGG	-	chr3_2:49387737-49387756	None:intergenic	50.0%
	AGGAACAAAAGGGATGAGGC+TGG	-	chr3_2:49387381-49387400	None:intergenic	50.0%
	GAAGAGGAGAAGGAGAGTGA+GGG	-	chr3_2:49387430-49387449	None:intergenic	50.0%
	TTGAGGAAGTGAGGTGGGAT+AGG	-	chr3_2:49387462-49387481	None:intergenic	50.0%
	AGGGTTTGAGGAAGTGAGGT+GGG	-	chr3_2:49387467-49387486	None:intergenic	50.0%
	AAGGGTTTGAGGAAGTGAGG+TGG	-	chr3_2:49387468-49387487	None:intergenic	50.0%
	GTGAAGGGTTTGAGGAAGTG+AGG	-	chr3_2:49387471-49387490	None:intergenic	50.0%
	TAATGAGGGAGAGGATGGAG+AGG	-	chr3_2:49387512-49387531	None:intergenic	50.0%
	CTCCATCCTCTCCCTCATTA+TGG	+	chr3_2:49387512-49387531	Msa0409070:CDS	50.0%
	AGCCATAATGAGGGAGAGGA+TGG	-	chr3_2:49387517-49387536	None:intergenic	50.0%
!!	AGTGTGGGTTAGGATGGTGA+GGG	-	chr3_2:49387550-49387569	None:intergenic	50.0%
!!	GTTAGGAGTGTGGGTTAGGA+TGG	-	chr3_2:49387556-49387575	None:intergenic	50.0%
!	CATTTCGAGGGGTATGAGGA+GGG	-	chr3_2:49387599-49387618	None:intergenic	50.0%
	GAAGAAGGGACCATTTCGAG+GGG	-	chr3_2:49387610-49387629	None:intergenic	50.0%
	TGGAATGATGGTACACGTGG+AGG	-	chr3_2:49387725-49387744	None:intergenic	50.0%
	TGATTGGGACGGTGGAATGA+TGG	-	chr3_2:49387737-49387756	None:intergenic	50.0%
	ATGAGGCTGGAGTGTGAGGA+GGG	-	chr3_2:49387368-49387387	None:intergenic	55.0%
	GGAAGAGGAGAAGGAGAGTG+AGG	-	chr3_2:49387431-49387450	None:intergenic	55.0%
	GGAAGTGAGGTGGGATAGGT+GGG	-	chr3_2:49387458-49387477	None:intergenic	55.0%
	AGGAAGTGAGGTGGGATAGG+TGG	-	chr3_2:49387459-49387478	None:intergenic	55.0%
	AGGTTGTGGAGTGCGGTGAA+GGG	-	chr3_2:49387486-49387505	None:intergenic	55.0%
	GAGGATGAGGTTGTGGAGTG+CGG	-	chr3_2:49387493-49387512	None:intergenic	55.0%
	GGATGGAGAGGATGAGGTTG+TGG	-	chr3_2:49387500-49387519	None:intergenic	55.0%
!!	GAGTGTGGGTTAGGATGGTG+AGG	-	chr3_2:49387551-49387570	None:intergenic	55.0%
!	GGAGGTTAGGAGTGTGGGTT+AGG	-	chr3_2:49387560-49387579	None:intergenic	55.0%
	ATGAGGAGGGAAGCAGATGG+TGG	-	chr3_2:49387586-49387605	None:intergenic	55.0%
	GGTATGAGGAGGGAAGCAGA+TGG	-	chr3_2:49387589-49387608	None:intergenic	55.0%
!	CCATTTCGAGGGGTATGAGG+AGG	-	chr3_2:49387600-49387619	None:intergenic	55.0%
	CCTCCTCATACCCCTCGAAA+TGG	+	chr3_2:49387597-49387616	Msa0409070:CDS	55.0%
!	GGACCATTTCGAGGGGTATG+AGG	-	chr3_2:49387603-49387622	None:intergenic	55.0%
	CGGTGGAATGATGGTACACG+TGG	-	chr3_2:49387728-49387747	None:intergenic	55.0%
	GATGACGTGGACGGATGAGT+TGG	-	chr3_2:49387814-49387833	None:intergenic	55.0%
	GTCGGATTCCAACAGTGGTG+AGG	-	chr3_2:49387854-49387873	None:intergenic	55.0%
	TCGGTAACGACGCGTTTCCA+CGG	-	chr3_2:49387879-49387898	None:intergenic	55.0%
	TATCACTTCGGATCCGGTGG+TGG	+	chr3_2:49387954-49387973	Msa0409070:CDS	55.0%
!!	TGGTGGATGCTCTGGGATGA+AGG	+	chr3_2:49387974-49387993	Msa0409070:CDS	55.0%
!!	GATGCTCTGGGATGAAGGCT+TGG	+	chr3_2:49387979-49387998	Msa0409070:CDS	55.0%
	ATGAGGCTGGAGTGTGAGGA+GGG	-	chr3_2:49387368-49387387	None:intergenic	55.0%
	GGAAGAGGAGAAGGAGAGTG+AGG	-	chr3_2:49387431-49387450	None:intergenic	55.0%
	GGAAGTGAGGTGGGATAGGT+GGG	-	chr3_2:49387458-49387477	None:intergenic	55.0%
	AGGAAGTGAGGTGGGATAGG+TGG	-	chr3_2:49387459-49387478	None:intergenic	55.0%
	AGGTTGTGGAGTGCGGTGAA+GGG	-	chr3_2:49387486-49387505	None:intergenic	55.0%
	GAGGATGAGGTTGTGGAGTG+CGG	-	chr3_2:49387493-49387512	None:intergenic	55.0%
	GGATGGAGAGGATGAGGTTG+TGG	-	chr3_2:49387500-49387519	None:intergenic	55.0%
!!	GAGTGTGGGTTAGGATGGTG+AGG	-	chr3_2:49387551-49387570	None:intergenic	55.0%
!	GGAGGTTAGGAGTGTGGGTT+AGG	-	chr3_2:49387560-49387579	None:intergenic	55.0%
	ATGAGGAGGGAAGCAGATGG+TGG	-	chr3_2:49387586-49387605	None:intergenic	55.0%
	GGTATGAGGAGGGAAGCAGA+TGG	-	chr3_2:49387589-49387608	None:intergenic	55.0%
!	CCATTTCGAGGGGTATGAGG+AGG	-	chr3_2:49387600-49387619	None:intergenic	55.0%
	CCTCCTCATACCCCTCGAAA+TGG	+	chr3_2:49387597-49387616	Msa0409070:CDS	55.0%
!	GGACCATTTCGAGGGGTATG+AGG	-	chr3_2:49387603-49387622	None:intergenic	55.0%
	CGGTGGAATGATGGTACACG+TGG	-	chr3_2:49387728-49387747	None:intergenic	55.0%
	GATGACGTGGACGGATGAGT+TGG	-	chr3_2:49387814-49387833	None:intergenic	55.0%
	GTCGGATTCCAACAGTGGTG+AGG	-	chr3_2:49387854-49387873	None:intergenic	55.0%
	TCGGTAACGACGCGTTTCCA+CGG	-	chr3_2:49387879-49387898	None:intergenic	55.0%
	TATCACTTCGGATCCGGTGG+TGG	+	chr3_2:49387954-49387973	Msa0409070:CDS	55.0%
!!	TGGTGGATGCTCTGGGATGA+AGG	+	chr3_2:49387974-49387993	Msa0409070:CDS	55.0%
!!	GATGCTCTGGGATGAAGGCT+TGG	+	chr3_2:49387979-49387998	Msa0409070:CDS	55.0%
	GATGAGGCTGGAGTGTGAGG+AGG	-	chr3_2:49387369-49387388	None:intergenic	60.0%
	AGGGATGAGGCTGGAGTGTG+AGG	-	chr3_2:49387372-49387391	None:intergenic	60.0%
	GTGGGAGAGGGAAGAGGAGA+AGG	-	chr3_2:49387440-49387459	None:intergenic	60.0%
	GGATAGGTGGGAGAGGGAAG+AGG	-	chr3_2:49387446-49387465	None:intergenic	60.0%
	GAGGTGGGATAGGTGGGAGA+GGG	-	chr3_2:49387452-49387471	None:intergenic	60.0%
	TGAGGTGGGATAGGTGGGAG+AGG	-	chr3_2:49387453-49387472	None:intergenic	60.0%
	GGAGTGCGGTGAAGGGTTTG+AGG	-	chr3_2:49387479-49387498	None:intergenic	60.0%
	GAGGTTGTGGAGTGCGGTGA+AGG	-	chr3_2:49387487-49387506	None:intergenic	60.0%
	GGGAGAGGATGGAGAGGATG+AGG	-	chr3_2:49387506-49387525	None:intergenic	60.0%
!!	GTGGGTTAGGATGGTGAGGG+AGG	-	chr3_2:49387547-49387566	None:intergenic	60.0%
!	GGAGCGGAGGTTAGGAGTGT+GGG	-	chr3_2:49387565-49387584	None:intergenic	60.0%
	TGGAGCGGAGGTTAGGAGTG+TGG	-	chr3_2:49387566-49387585	None:intergenic	60.0%
!!	CAGATGGTGGAGCGGAGGTT+AGG	-	chr3_2:49387573-49387592	None:intergenic	60.0%
!!	GAGGGAAGCAGATGGTGGAG+CGG	-	chr3_2:49387581-49387600	None:intergenic	60.0%
	GTAACGACGCGTTTCCACGG+CGG	-	chr3_2:49387876-49387895	None:intergenic	60.0%
	GATGAGGCTGGAGTGTGAGG+AGG	-	chr3_2:49387369-49387388	None:intergenic	60.0%
	AGGGATGAGGCTGGAGTGTG+AGG	-	chr3_2:49387372-49387391	None:intergenic	60.0%
	GTGGGAGAGGGAAGAGGAGA+AGG	-	chr3_2:49387440-49387459	None:intergenic	60.0%
	GGATAGGTGGGAGAGGGAAG+AGG	-	chr3_2:49387446-49387465	None:intergenic	60.0%
	GAGGTGGGATAGGTGGGAGA+GGG	-	chr3_2:49387452-49387471	None:intergenic	60.0%
	TGAGGTGGGATAGGTGGGAG+AGG	-	chr3_2:49387453-49387472	None:intergenic	60.0%
	GGAGTGCGGTGAAGGGTTTG+AGG	-	chr3_2:49387479-49387498	None:intergenic	60.0%
	GAGGTTGTGGAGTGCGGTGA+AGG	-	chr3_2:49387487-49387506	None:intergenic	60.0%
	GGGAGAGGATGGAGAGGATG+AGG	-	chr3_2:49387506-49387525	None:intergenic	60.0%
!!	GTGGGTTAGGATGGTGAGGG+AGG	-	chr3_2:49387547-49387566	None:intergenic	60.0%
!	GGAGCGGAGGTTAGGAGTGT+GGG	-	chr3_2:49387565-49387584	None:intergenic	60.0%
	TGGAGCGGAGGTTAGGAGTG+TGG	-	chr3_2:49387566-49387585	None:intergenic	60.0%
!!	CAGATGGTGGAGCGGAGGTT+AGG	-	chr3_2:49387573-49387592	None:intergenic	60.0%
!!	GAGGGAAGCAGATGGTGGAG+CGG	-	chr3_2:49387581-49387600	None:intergenic	60.0%
	GTAACGACGCGTTTCCACGG+CGG	-	chr3_2:49387876-49387895	None:intergenic	60.0%
!!	GGAAGCAGATGGTGGAGCGG+AGG	-	chr3_2:49387578-49387597	None:intergenic	65.0%
	CGGCGGTCGGATTCCAACAG+TGG	-	chr3_2:49387859-49387878	None:intergenic	65.0%
	CTGTTGGAATCCGACCGCCG+TGG	+	chr3_2:49387859-49387878	Msa0409070:CDS	65.0%
!	CACTTCGGATCCGGTGGTGG+TGG	+	chr3_2:49387957-49387976	Msa0409070:CDS	65.0%
!!	TCCGGTGGTGGTGGATGCTC+TGG	+	chr3_2:49387966-49387985	Msa0409070:CDS	65.0%
!	CCCAGAGCATCCACCACCAC+CGG	-	chr3_2:49387970-49387989	None:intergenic	65.0%
!!	CCGGTGGTGGTGGATGCTCT+GGG	+	chr3_2:49387967-49387986	Msa0409070:CDS	65.0%
!!	GGAAGCAGATGGTGGAGCGG+AGG	-	chr3_2:49387578-49387597	None:intergenic	65.0%
	CGGCGGTCGGATTCCAACAG+TGG	-	chr3_2:49387859-49387878	None:intergenic	65.0%
	CTGTTGGAATCCGACCGCCG+TGG	+	chr3_2:49387859-49387878	Msa0409070:CDS	65.0%
!	CACTTCGGATCCGGTGGTGG+TGG	+	chr3_2:49387957-49387976	Msa0409070:CDS	65.0%
!!	TCCGGTGGTGGTGGATGCTC+TGG	+	chr3_2:49387966-49387985	Msa0409070:CDS	65.0%
!	CCCAGAGCATCCACCACCAC+CGG	-	chr3_2:49387970-49387989	None:intergenic	65.0%
!!	CCGGTGGTGGTGGATGCTCT+GGG	+	chr3_2:49387967-49387986	Msa0409070:CDS	65.0%
	CGACGCGTTTCCACGGCGGT+CGG	-	chr3_2:49387872-49387891	None:intergenic	70.0%
	CGACGCGTTTCCACGGCGGT+CGG	-	chr3_2:49387872-49387891	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	49387306	49388112	49387306	ID=Msa0409070;Name=Msa0409070
chr3_2	mRNA	49387306	49388112	49387306	ID=Msa0409070-mRNA-1;Parent=Msa0409070;Name=Msa0409070-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|268
chr3_2	exon	49387306	49388112	49387306	ID=Msa0409070-mRNA-1:exon:9658;Parent=Msa0409070-mRNA-1
chr3_2	CDS	49387306	49388112	49387306	ID=Msa0409070-mRNA-1:cds;Parent=Msa0409070-mRNA-1

Gene Sequence

>Msa0409070

ATGGAAATCCTTCAACATTGGCTAGTTTACCATCCAAACATTCTAAATTTCACATGGAACCCTCCTCACACTCCAGCCTCATCCCTTTTGTTCCTCTCTCTTTCCATAGCCTTTTATCTCTCCCTCACTCTCCTTCTCCTCTTCCCTCTCCCACCTATCCCACCTCACTTCCTCAAACCCTTCACCGCACTCCACAACCTCATCCTCTCCATCCTCTCCCTCATTATGGCTATTGGCACCTCCCTCACCATCCTAACCCACACTCCTAACCTCCGCTCCACCATCTGCTTCCCTCCTCATACCCCTCGAAATGGTCCCTTCTTCTTTTGGGCCTACATCTTCTACCTCTCAAAATATCTTGAATTCATTGACACACTCTTCATCATCCTCTCAAGATCCATCAAACGTCTCTCATTCCTCCACGTGTACCATCATTCCACCGTCCCAATCATGTGTTATCTATGGCTTAATTCTTCTCAATCACTCTTCCCTATTGCACTTCTTACCAACTCATCCGTCCACGTCATCATGTACTCTTACTACTTCCTCACCACTGTTGGAATCCGACCGCCGTGGAAACGCGTCGTTACCGACTGCCAGATTGTTCAGTTCGTGTTCAGCTTCGCCGTCTCCTGTCTCATGCTTTATTATCACTTCGGATCCGGTGGTGGTGGATGCTCTGGGATGAAGGCTTGGTGCTTCAATGCTGTTTTTAATGCTTCTCTTTTGGCTCTTTTTCTTGATTTTCATCTCAAGAGTTATGCTAATTCTAAGAAGAAGAAACATACTACCGAAAAAGACTTGTGA

Protein sequence

>Msa0409070

MEILQHWLVYHPNILNFTWNPPHTPASSLLFLSLSIAFYLSLTLLLLFPLPPIPPHFLKPFTALHNLILSILSLIMAIGTSLTILTHTPNLRSTICFPPHTPRNGPFFFWAYIFYLSKYLEFIDTLFIILSRSIKRLSFLHVYHHSTVPIMCYLWLNSSQSLFPIALLTNSSVHVIMYSYYFLTTVGIRPPWKRVVTDCQIVQFVFSFAVSCLMLYYHFGSGGGGCSGMKAWCFNAVFNASLLALFLDFHLKSYANSKKKKHTTEKDL*