Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1382640 | XP_013466127.1 | 90.210 | 143 | 12 | 1 | 1 | 141 | 1 | 143 | 1.87e-88 | 264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1382640 | I3SQ79 | 90.210 | 143 | 12 | 1 | 1 | 141 | 1 | 143 | 8.93e-89 | 264 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003840 | Msa1382640 | 0.956083 | 6.792719e-114 | -8.615850e-47 |
| Msa0016830 | Msa1382640 | -0.807117 | 5.910711e-50 | -8.615850e-47 |
| Msa0030710 | Msa1382640 | -0.818956 | 1.495028e-52 | -8.615850e-47 |
| Msa0034590 | Msa1382640 | -0.840021 | 1.117061e-57 | -8.615850e-47 |
| Msa0034800 | Msa1382640 | -0.802570 | 5.269473e-49 | -8.615850e-47 |
| Msa0039780 | Msa1382640 | -0.817037 | 4.057891e-52 | -8.615850e-47 |
| Msa0042500 | Msa1382640 | -0.805739 | 1.154290e-49 | -8.615850e-47 |
| Msa0049670 | Msa1382640 | -0.815544 | 8.757065e-52 | -8.615850e-47 |
| Msa0070580 | Msa1382640 | -0.803651 | 3.149288e-49 | -8.615850e-47 |
| Msa0078170 | Msa1382640 | -0.808021 | 3.801091e-50 | -8.615850e-47 |
| Msa0079570 | Msa1382640 | -0.813477 | 2.509608e-51 | -8.615850e-47 |
| Msa0080060 | Msa1382640 | -0.805200 | 1.497045e-49 | -8.615850e-47 |
| Msa0083200 | Msa1382640 | -0.809945 | 1.471937e-50 | -8.615850e-47 |
| Msa0087370 | Msa1382640 | -0.821845 | 3.251527e-53 | -8.615850e-47 |
| Msa0095150 | Msa1382640 | -0.805439 | 1.334457e-49 | -8.615850e-47 |
| Msa1351380 | Msa1382640 | -0.823395 | 1.417400e-53 | -8.615850e-47 |
| Msa1354860 | Msa1382640 | -0.806707 | 7.218613e-50 | -8.615850e-47 |
| Msa1360070 | Msa1382640 | -0.801918 | 7.178431e-49 | -8.615850e-47 |
| Msa1374140 | Msa1382640 | 0.997679 | 4.964979e-247 | -8.615850e-47 |
| Msa1374210 | Msa1382640 | -0.817740 | 2.818844e-52 | -8.615850e-47 |
| Msa1375640 | Msa1382640 | 0.803065 | 4.164275e-49 | -8.615850e-47 |
| Msa1376520 | Msa1382640 | 0.829443 | 5.132965e-55 | -8.615850e-47 |
| Msa1377170 | Msa1382640 | -0.801850 | 7.410637e-49 | -8.615850e-47 |
| Msa1381300 | Msa1382640 | -0.821962 | 3.054693e-53 | -8.615850e-47 |
| Msa1381870 | Msa1382640 | -0.803608 | 3.214475e-49 | -8.615850e-47 |
| Msa1382640 | Msa1389990 | -0.803246 | 3.820456e-49 | -8.615850e-47 |
| Msa1382640 | Msa1392570 | -0.803527 | 3.340620e-49 | -8.615850e-47 |
| Msa1382640 | Msa1393350 | -0.805958 | 1.037970e-49 | -8.615850e-47 |
| Msa1382640 | Msa1395200 | -0.806145 | 9.480448e-50 | -8.615850e-47 |
| Msa1382640 | Msa1397560 | -0.812954 | 3.268439e-51 | -8.615850e-47 |
| Msa1382640 | Msa1400330 | -0.827127 | 1.857613e-54 | -8.615850e-47 |
| Msa1382640 | Msa1400940 | 0.810500 | 1.117889e-50 | -8.615850e-47 |
| Msa1382640 | Msa1402340 | -0.823742 | 1.176128e-53 | -8.615850e-47 |
| Msa1382640 | Msa1409360 | -0.813745 | 2.190674e-51 | -8.615850e-47 |
| Msa1382640 | Msa1412800 | -0.805804 | 1.118299e-49 | -8.615850e-47 |
| Msa1382640 | Msa1421490 | -0.800116 | 1.676239e-48 | -8.615850e-47 |
| Msa1382640 | Msa1422820 | -0.801847 | 7.421462e-49 | -8.615850e-47 |
| Msa1382640 | Msa1426690 | -0.812711 | 3.694674e-51 | -8.615850e-47 |
| Msa1382640 | Msa1429190 | 0.817110 | 3.907377e-52 | -8.615850e-47 |
| Msa1382640 | Msa1433060 | -0.814021 | 1.904527e-51 | -8.615850e-47 |
| Msa1382640 | Msa1437590 | 0.802716 | 4.916579e-49 | -8.615850e-47 |
| Msa1382640 | Msa1448410 | -0.828680 | 7.858509e-55 | -8.615850e-47 |
| Msa1382640 | Msa1454940 | -0.805905 | 1.065200e-49 | -8.615850e-47 |
| Msa1382640 | Msa1462210 | -0.808515 | 2.982537e-50 | -8.615850e-47 |
| Msa0611450 | Msa1382640 | -0.806330 | 8.669356e-50 | -8.615850e-47 |
| Msa0612090 | Msa1382640 | -0.805358 | 1.387102e-49 | -8.615850e-47 |
| Msa0619450 | Msa1382640 | -0.800535 | 1.377237e-48 | -8.615850e-47 |
| Msa0619480 | Msa1382640 | -0.810859 | 9.346074e-51 | -8.615850e-47 |
| Msa0622800 | Msa1382640 | -0.814930 | 1.198998e-51 | -8.615850e-47 |
| Msa0624890 | Msa1382640 | -0.804451 | 2.146417e-49 | -8.615850e-47 |
| Msa0625550 | Msa1382640 | -0.815634 | 8.359207e-52 | -8.615850e-47 |
| Msa0640780 | Msa1382640 | -0.802231 | 6.187338e-49 | -8.615850e-47 |
| Msa0641970 | Msa1382640 | -0.806525 | 7.886480e-50 | -8.615850e-47 |
| Msa0651720 | Msa1382640 | -0.804056 | 2.594028e-49 | -8.615850e-47 |
| Msa0654500 | Msa1382640 | -0.800537 | 1.375609e-48 | -8.615850e-47 |
| Msa0654570 | Msa1382640 | -0.800769 | 1.233755e-48 | -8.615850e-47 |
| Msa0659640 | Msa1382640 | -0.806691 | 7.273396e-50 | -8.615850e-47 |
| Msa0662140 | Msa1382640 | -0.803808 | 2.920800e-49 | -8.615850e-47 |
| Msa0665010 | Msa1382640 | -0.806323 | 8.697089e-50 | -8.615850e-47 |
| Msa0670490 | Msa1382640 | -0.816838 | 4.497865e-52 | -8.615850e-47 |
| Msa0681190 | Msa1382640 | -0.806744 | 7.087721e-50 | -8.615850e-47 |
| Msa0694170 | Msa1382640 | -0.810020 | 1.418623e-50 | -8.615850e-47 |
| Msa0694810 | Msa1382640 | -0.811249 | 7.694634e-51 | -8.615850e-47 |
| Msa0700430 | Msa1382640 | -0.801092 | 1.060102e-48 | -8.615850e-47 |
| Msa0700930 | Msa1382640 | -0.800618 | 1.324728e-48 | -8.615850e-47 |
| Msa0707870 | Msa1382640 | -0.820089 | 8.246927e-53 | -8.615850e-47 |
| Msa0708840 | Msa1382640 | -0.839167 | 1.863367e-57 | -8.615850e-47 |
| Msa0714060 | Msa1382640 | -0.801726 | 7.858446e-49 | -8.615850e-47 |
| Msa0714230 | Msa1382640 | -0.822192 | 2.701067e-53 | -8.615850e-47 |
| Msa0729590 | Msa1382640 | -0.800963 | 1.126215e-48 | -8.615850e-47 |
| Msa0730250 | Msa1382640 | -0.808111 | 3.636987e-50 | -8.615850e-47 |
| Msa0742690 | Msa1382640 | -0.826357 | 2.835382e-54 | -8.615850e-47 |
| Msa0756570 | Msa1382640 | 0.802419 | 5.661051e-49 | -8.615850e-47 |
| Msa0766910 | Msa1382640 | -0.800590 | 1.341874e-48 | -8.615850e-47 |
| Msa0779830 | Msa1382640 | -0.810904 | 9.140640e-51 | -8.615850e-47 |
| Msa0808500 | Msa1382640 | -0.804231 | 2.385931e-49 | -8.615850e-47 |
| Msa0822680 | Msa1382640 | -0.803684 | 3.100208e-49 | -8.615850e-47 |
| Msa0827560 | Msa1382640 | -0.825788 | 3.872091e-54 | -8.615850e-47 |
| Msa0129820 | Msa1382640 | -0.810303 | 1.232405e-50 | -8.615850e-47 |
| Msa0130360 | Msa1382640 | 0.800864 | 1.179640e-48 | -8.615850e-47 |
| Msa0134120 | Msa1382640 | -0.817899 | 2.595657e-52 | -8.615850e-47 |
| Msa0138800 | Msa1382640 | -0.804115 | 2.521540e-49 | -8.615850e-47 |
| Msa0145990 | Msa1382640 | -0.803444 | 3.476305e-49 | -8.615850e-47 |
| Msa0146390 | Msa1382640 | 0.892898 | 1.037769e-74 | -8.615850e-47 |
| Msa0164310 | Msa1382640 | -0.828603 | 8.200602e-55 | -8.615850e-47 |
| Msa0170640 | Msa1382640 | -0.833588 | 4.892691e-56 | -8.615850e-47 |
| Msa0172110 | Msa1382640 | -0.800317 | 1.525427e-48 | -8.615850e-47 |
| Msa0173380 | Msa1382640 | 0.821300 | 4.345444e-53 | -8.615850e-47 |
| Msa0175240 | Msa1382640 | -0.815758 | 7.846239e-52 | -8.615850e-47 |
| Msa0176370 | Msa1382640 | 0.807934 | 3.965612e-50 | -8.615850e-47 |
| Msa0186380 | Msa1382640 | -0.808998 | 2.350734e-50 | -8.615850e-47 |
| Msa0186750 | Msa1382640 | -0.804976 | 1.668205e-49 | -8.615850e-47 |
| Msa0190470 | Msa1382640 | -0.810858 | 9.349785e-51 | -8.615850e-47 |
| Msa0192290 | Msa1382640 | 0.811932 | 5.467569e-51 | -8.615850e-47 |
| Msa0202650 | Msa1382640 | 0.800308 | 1.531941e-48 | -8.615850e-47 |
| Msa0219720 | Msa1382640 | -0.803759 | 2.990072e-49 | -8.615850e-47 |
| Msa0228360 | Msa1382640 | -0.817738 | 2.822535e-52 | -8.615850e-47 |
| Msa1235960 | Msa1382640 | -0.807452 | 5.020828e-50 | -8.615850e-47 |
| Msa1235990 | Msa1382640 | -0.807236 | 5.577407e-50 | -8.615850e-47 |
| Msa1240240 | Msa1382640 | -0.806113 | 9.630977e-50 | -8.615850e-47 |
| Msa1258600 | Msa1382640 | 0.811607 | 6.434389e-51 | -8.615850e-47 |
| Msa1264300 | Msa1382640 | -0.825335 | 4.958864e-54 | -8.615850e-47 |
| Msa1264940 | Msa1382640 | 0.810955 | 8.912318e-51 | -8.615850e-47 |
| Msa1265900 | Msa1382640 | -0.832720 | 8.047747e-56 | -8.615850e-47 |
| Msa1267800 | Msa1382640 | -0.817616 | 3.006106e-52 | -8.615850e-47 |
| Msa1292700 | Msa1382640 | -0.805856 | 1.090703e-49 | -8.615850e-47 |
| Msa1302120 | Msa1382640 | 0.807403 | 5.142785e-50 | -8.615850e-47 |
| Msa1303150 | Msa1382640 | 0.807928 | 3.976959e-50 | -8.615850e-47 |
| Msa1303470 | Msa1382640 | -0.828661 | 7.941110e-55 | -8.615850e-47 |
| Msa1316090 | Msa1382640 | -0.807990 | 3.858041e-50 | -8.615850e-47 |
| Msa1320660 | Msa1382640 | -0.803347 | 3.640418e-49 | -8.615850e-47 |
| Msa1333220 | Msa1382640 | -0.807114 | 5.919847e-50 | -8.615850e-47 |
| Msa1334000 | Msa1382640 | 0.803724 | 3.040440e-49 | -8.615850e-47 |
| Msa1334350 | Msa1382640 | -0.823943 | 1.054930e-53 | -8.615850e-47 |
| Msa1335090 | Msa1382640 | 0.800340 | 1.509119e-48 | -8.615850e-47 |
| Msa1341590 | Msa1382640 | -0.805480 | 1.308047e-49 | -8.615850e-47 |
| Msa1343540 | Msa1382640 | -0.818965 | 1.488246e-52 | -8.615850e-47 |
| Msa0369580 | Msa1382640 | -0.830521 | 2.802316e-55 | -8.615850e-47 |
| Msa0378440 | Msa1382640 | -0.815401 | 9.419519e-52 | -8.615850e-47 |
| Msa0385870 | Msa1382640 | -0.814549 | 1.456121e-51 | -8.615850e-47 |
| Msa0408490 | Msa1382640 | -0.807286 | 5.443287e-50 | -8.615850e-47 |
| Msa0417000 | Msa1382640 | -0.841555 | 4.425446e-58 | -8.615850e-47 |
| Msa0426680 | Msa1382640 | -0.807756 | 4.326788e-50 | -8.615850e-47 |
| Msa0427890 | Msa1382640 | -0.810234 | 1.275701e-50 | -8.615850e-47 |
| Msa0433090 | Msa1382640 | 0.802133 | 6.483489e-49 | -8.615850e-47 |
| Msa0433890 | Msa1382640 | -0.800405 | 1.463658e-48 | -8.615850e-47 |
| Msa0463820 | Msa1382640 | -0.830119 | 3.513082e-55 | -8.615850e-47 |
| Msa0472870 | Msa1382640 | -0.805803 | 1.118995e-49 | -8.615850e-47 |
| Msa0473320 | Msa1382640 | -0.801230 | 9.931731e-49 | -8.615850e-47 |
| Msa0474120 | Msa1382640 | -0.805799 | 1.121028e-49 | -8.615850e-47 |
| Msa0481580 | Msa1382640 | -0.808780 | 2.617073e-50 | -8.615850e-47 |
| Msa0482360 | Msa1382640 | 0.831393 | 1.712641e-55 | -8.615850e-47 |
| Msa0983680 | Msa1382640 | -0.803613 | 3.206320e-49 | -8.615850e-47 |
| Msa0985980 | Msa1382640 | -0.832669 | 8.282702e-56 | -8.615850e-47 |
| Msa1011140 | Msa1382640 | -0.813326 | 2.709063e-51 | -8.615850e-47 |
| Msa1019040 | Msa1382640 | -0.810272 | 1.252024e-50 | -8.615850e-47 |
| Msa1039150 | Msa1382640 | -0.807775 | 4.286008e-50 | -8.615850e-47 |
| Msa1043660 | Msa1382640 | 0.988603 | 1.135294e-174 | -8.615850e-47 |
| Msa1044520 | Msa1382640 | -0.814223 | 1.719135e-51 | -8.615850e-47 |
| Msa1065090 | Msa1382640 | -0.808305 | 3.305581e-50 | -8.615850e-47 |
| Msa1083660 | Msa1382640 | -0.824407 | 8.210386e-54 | -8.615850e-47 |
| Msa1084630 | Msa1382640 | -0.825054 | 5.777731e-54 | -8.615850e-47 |
| Msa0258280 | Msa1382640 | -0.812050 | 5.152244e-51 | -8.615850e-47 |
| Msa0260930 | Msa1382640 | -0.813543 | 2.426804e-51 | -8.615850e-47 |
| Msa0261020 | Msa1382640 | -0.821289 | 4.370827e-53 | -8.615850e-47 |
| Msa0285510 | Msa1382640 | -0.801965 | 7.018424e-49 | -8.615850e-47 |
| Msa0293070 | Msa1382640 | -0.815853 | 7.470568e-52 | -8.615850e-47 |
| Msa0297320 | Msa1382640 | -0.804525 | 2.072072e-49 | -8.615850e-47 |
| Msa0313050 | Msa1382640 | 0.813851 | 2.076217e-51 | -8.615850e-47 |
| Msa0322460 | Msa1382640 | 0.804229 | 2.387441e-49 | -8.615850e-47 |
| Msa0336550 | Msa1382640 | -0.816844 | 4.485469e-52 | -8.615850e-47 |
| Msa1129130 | Msa1382640 | -0.803016 | 4.261901e-49 | -8.615850e-47 |
| Msa1129470 | Msa1382640 | -0.809043 | 2.299214e-50 | -8.615850e-47 |
| Msa1197210 | Msa1382640 | -0.809760 | 1.613853e-50 | -8.615850e-47 |
| Msa1197740 | Msa1382640 | -0.808399 | 3.157263e-50 | -8.615850e-47 |
| Msa1198280 | Msa1382640 | -0.805617 | 1.224513e-49 | -8.615850e-47 |
| Msa1198420 | Msa1382640 | -0.802346 | 5.859295e-49 | -8.615850e-47 |
| Msa1205120 | Msa1382640 | 0.803255 | 3.803980e-49 | -8.615850e-47 |
| Msa1207000 | Msa1382640 | 0.809448 | 1.882891e-50 | -8.615850e-47 |
| Msa1207090 | Msa1382640 | 0.807492 | 4.923001e-50 | -8.615850e-47 |
| Msa1215660 | Msa1382640 | -0.804967 | 1.675313e-49 | -8.615850e-47 |
| Msa1219530 | Msa1382640 | -0.812498 | 4.112711e-51 | -8.615850e-47 |
| Msa1220390 | Msa1382640 | -0.829849 | 4.089603e-55 | -8.615850e-47 |
| Msa1221520 | Msa1382640 | 0.812270 | 4.613066e-51 | -8.615850e-47 |
| Msa0483090 | Msa1382640 | -0.802138 | 6.467274e-49 | -8.615850e-47 |
| Msa0483410 | Msa1382640 | -0.811609 | 6.426280e-51 | -8.615850e-47 |
| Msa0484590 | Msa1382640 | -0.804311 | 2.296298e-49 | -8.615850e-47 |
| Msa0486850 | Msa1382640 | -0.805515 | 1.285856e-49 | -8.615850e-47 |
| Msa0501540 | Msa1382640 | -0.802858 | 4.595816e-49 | -8.615850e-47 |
| Msa0504430 | Msa1382640 | 0.804132 | 2.501808e-49 | -8.615850e-47 |
| Msa0516340 | Msa1382640 | -0.825104 | 5.621819e-54 | -8.615850e-47 |
| Msa0523400 | Msa1382640 | -0.805565 | 1.255448e-49 | -8.615850e-47 |
| Msa0524710 | Msa1382640 | 0.804071 | 2.575652e-49 | -8.615850e-47 |
| Msa0559640 | Msa1382640 | -0.813478 | 2.508008e-51 | -8.615850e-47 |
| Msa0564000 | Msa1382640 | -0.803847 | 2.866993e-49 | -8.615850e-47 |
| Msa0574230 | Msa1382640 | -0.829570 | 4.779741e-55 | -8.615850e-47 |
| Msa0576510 | Msa1382640 | -0.827630 | 1.406878e-54 | -8.615850e-47 |
| Msa0577960 | Msa1382640 | -0.814151 | 1.783040e-51 | -8.615850e-47 |
| Msa0597370 | Msa1382640 | -0.807296 | 5.418685e-50 | -8.615850e-47 |
| Msa0600280 | Msa1382640 | -0.806979 | 6.323637e-50 | -8.615850e-47 |
| Msa0862750 | Msa1382640 | -0.820869 | 5.461545e-53 | -8.615850e-47 |
| Msa0873070 | Msa1382640 | -0.822711 | 2.046900e-53 | -8.615850e-47 |
| Msa0879940 | Msa1382640 | -0.805525 | 1.280129e-49 | -8.615850e-47 |
| Msa0880370 | Msa1382640 | -0.811713 | 6.099741e-51 | -8.615850e-47 |
| Msa0883880 | Msa1382640 | -0.806473 | 8.085398e-50 | -8.615850e-47 |
| Msa0894580 | Msa1382640 | -0.800476 | 1.416028e-48 | -8.615850e-47 |
| Msa0906310 | Msa1382640 | -0.800186 | 1.621557e-48 | -8.615850e-47 |
| Msa0911440 | Msa1382640 | -0.816257 | 6.070858e-52 | -8.615850e-47 |
| Msa0911490 | Msa1382640 | -0.810997 | 8.724126e-51 | -8.615850e-47 |
| Msa0946570 | Msa1382640 | -0.812137 | 4.933125e-51 | -8.615850e-47 |
| Msa0956580 | Msa1382640 | -0.801185 | 1.014616e-48 | -8.615850e-47 |
| Msa0967250 | Msa1382640 | -0.823154 | 1.613859e-53 | -8.615850e-47 |
| Msa0967260 | Msa1382640 | -0.806495 | 7.999923e-50 | -8.615850e-47 |
| Msa0975460 | Msa1382640 | -0.816757 | 4.691299e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1382640 | MtrunA17_Chr1g0155341 | 90.210 | 143 | 12 | 1 | 1 | 141 | 1 | 143 | 1.72e-92 | 264 |
| Msa1382640 | MtrunA17_Chr3g0141671 | 62.937 | 143 | 44 | 5 | 1 | 140 | 1 | 137 | 1.35e-55 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1382640 | AT1G19530.2 | 41.538 | 130 | 57 | 3 | 1 | 129 | 1 | 112 | 2.73e-18 | 75.5 |
| Msa1382640 | AT1G19530.1 | 41.538 | 130 | 57 | 3 | 1 | 129 | 1 | 112 | 2.73e-18 | 75.5 |
Find 39 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATGAAATTGATGCTTAT+TGG | 0.156482 | tig0020520:+95877 | Msa1382640:CDS |
| AATCATATGGTACCTGATTT+AGG | 0.175839 | tig0020520:-95698 | None:intergenic |
| CTGAATAGTCTTTGACAAAT+TGG | 0.206876 | tig0020520:-95943 | None:intergenic |
| GAACGTACTTGACACAAATT+TGG | 0.215908 | tig0020520:+97007 | Msa1382640:CDS |
| GTCAAGTACGTTCATATTAA+AGG | 0.224800 | tig0020520:-96997 | None:intergenic |
| CTGTTTCAGCCATACTTAAA+AGG | 0.239435 | tig0020520:+95838 | Msa1382640:intron |
| GCAAATCAACGTGTGTTTCT+TGG | 0.281985 | tig0020520:+97487 | Msa1382640:three_prime_UTR |
| CAATTTGTCAAAGACTATTC+AGG | 0.285232 | tig0020520:+95944 | Msa1382640:CDS |
| ACCACAATGCAATTTCTAAA+TGG | 0.294299 | tig0020520:-95601 | None:intergenic |
| CAGTTTCACGTTGCCAGTTT+GGG | 0.309436 | tig0020520:+97277 | Msa1382640:CDS |
| GCAGGTGGACTAAGAGTAAC+TGG | 0.334701 | tig0020520:+97200 | Msa1382640:intron |
| TCAAGTACGTTCATATTAAA+GGG | 0.359264 | tig0020520:-96996 | None:intergenic |
| ACAGTTTCACGTTGCCAGTT+TGG | 0.359415 | tig0020520:+97276 | Msa1382640:CDS |
| TCTTCAATTGATCCTAAATC+AGG | 0.362673 | tig0020520:+95686 | Msa1382640:CDS |
| TTGGATGCAGCTTCCATCAT+TGG | 0.363993 | tig0020520:-97241 | None:intergenic |
| GGGTTCTCTTATGGCAGGAT+GGG | 0.445491 | tig0020520:+95658 | Msa1382640:CDS |
| TCTGAATGAGCCACCAATGA+TGG | 0.467236 | tig0020520:+97228 | Msa1382640:CDS |
| CCATGCCCGTGGCCCACGTA+AGG | 0.471373 | tig0020520:+96970 | Msa1382640:CDS |
| GGGTCCCTTACGTGGGCCAC+GGG | 0.472849 | tig0020520:-96975 | None:intergenic |
| GGGGTCCCTTACGTGGGCCA+CGG | 0.474803 | tig0020520:-96976 | None:intergenic |
| CCTTACGTGGGCCACGGGCA+TGG | 0.492032 | tig0020520:-96970 | None:intergenic |
| GGTTCTCTTATGGCAGGATG+GGG | 0.492223 | tig0020520:+95659 | Msa1382640:CDS |
| CAATCACTAACTTCATCTAC+GGG | 0.495529 | tig0020520:-97316 | None:intergenic |
| GAAATCAAAGAAGAAGATAG+AGG | 0.499005 | tig0020520:+95899 | Msa1382640:CDS |
| GATGCAGCTTCCATCATTGG+TGG | 0.505474 | tig0020520:-97238 | None:intergenic |
| TGGGTTCTCTTATGGCAGGA+TGG | 0.507870 | tig0020520:+95657 | Msa1382640:CDS |
| ACAAATTGGAAATTGCTGTA+AGG | 0.512610 | tig0020520:-95929 | None:intergenic |
| TCAATCACTAACTTCATCTA+CGG | 0.513170 | tig0020520:-97317 | None:intergenic |
| AAACTGTGCTGCATACTTGT+TGG | 0.515262 | tig0020520:-97260 | None:intergenic |
| TATTAAAGGGGTCCCTTACG+TGG | 0.530982 | tig0020520:-96983 | None:intergenic |
| AAAATGGGTTCTCTTATGGC+AGG | 0.548408 | tig0020520:+95653 | Msa1382640:exon |
| CATGCCCGTGGCCCACGTAA+GGG | 0.568293 | tig0020520:+96971 | Msa1382640:CDS |
| TCCATTTAGAAATTGCATTG+TGG | 0.619587 | tig0020520:+95600 | Msa1382640:five_prime_UTR |
| GACATAAATATATACATACA+AGG | 0.637376 | tig0020520:-97366 | None:intergenic |
| GAAGTCAATGACCATGCCCG+TGG | 0.649977 | tig0020520:+96959 | Msa1382640:CDS |
| CAAGTACGTTCATATTAAAG+GGG | 0.651488 | tig0020520:-96995 | None:intergenic |
| ATTAAAGGGGTCCCTTACGT+GGG | 0.678500 | tig0020520:-96982 | None:intergenic |
| CAGGTGGACTAAGAGTAACT+GGG | 0.688506 | tig0020520:+97201 | Msa1382640:intron |
| AATCACTAACTTCATCTACG+GGG | 0.796732 | tig0020520:-97315 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTGGAAAAATT+TGG | - | tig0020520:96047-96066 | None:intergenic | 10.0% |
| !!! | TACAAAATCATATATATTTT+CGG | - | tig0020520:96719-96738 | None:intergenic | 10.0% |
| !! | TGAAATAAAAACATTAAAAT+TGG | - | tig0020520:96860-96879 | None:intergenic | 10.0% |
| !!! | TTATTTTTTTTGGAAAAATT+TGG | - | tig0020520:96047-96066 | None:intergenic | 10.0% |
| !!! | TACAAAATCATATATATTTT+CGG | - | tig0020520:96719-96738 | None:intergenic | 10.0% |
| !! | TGAAATAAAAACATTAAAAT+TGG | - | tig0020520:96860-96879 | None:intergenic | 10.0% |
| !! | AATAAATAAAATACATACGA+AGG | + | tig0020520:96062-96081 | Msa1382640:intron | 15.0% |
| !!! | AAATACATCTTTAATTTCAT+TGG | + | tig0020520:96220-96239 | Msa1382640:intron | 15.0% |
| !! | TATAGTATTATATATAGTGT+TGG | - | tig0020520:96406-96425 | None:intergenic | 15.0% |
| !! | TTTACACACAATATTAAAAT+TGG | - | tig0020520:96830-96849 | None:intergenic | 15.0% |
| !!! | TTAATGTTTTTATTTCATGA+TGG | + | tig0020520:96863-96882 | Msa1382640:intron | 15.0% |
| !! | AATAAATAAAATACATACGA+AGG | + | tig0020520:96062-96081 | Msa1382640:intron | 15.0% |
| !!! | AAATACATCTTTAATTTCAT+TGG | + | tig0020520:96220-96239 | Msa1382640:intron | 15.0% |
| !! | TATAGTATTATATATAGTGT+TGG | - | tig0020520:96406-96425 | None:intergenic | 15.0% |
| !! | TTTACACACAATATTAAAAT+TGG | - | tig0020520:96830-96849 | None:intergenic | 15.0% |
| !!! | TTAATGTTTTTATTTCATGA+TGG | + | tig0020520:96863-96882 | Msa1382640:intron | 15.0% |
| !! | TTGATTCTATACAGAAAAAA+TGG | + | tig0020520:95637-95656 | Msa1382640:exon | 20.0% |
| !! | TGATTCTATACAGAAAAAAT+GGG | + | tig0020520:95638-95657 | Msa1382640:exon | 20.0% |
| !!! | AAGTATCGTTATTAATCATA+TGG | - | tig0020520:95714-95733 | None:intergenic | 20.0% |
| !! | AATCATTATTAGAACTTAGA+CGG | + | tig0020520:95786-95805 | Msa1382640:intron | 20.0% |
| !!! | CTACTATTTTCTTTTTCTTT+TGG | - | tig0020520:96374-96393 | None:intergenic | 20.0% |
| !! | CTAAACATTAATTTCAAACT+TGG | - | tig0020520:96903-96922 | None:intergenic | 20.0% |
| !!! | CAAGTTTGAAATTAATGTTT+AGG | + | tig0020520:96901-96920 | Msa1382640:intron | 20.0% |
| !! | CATATGCATAATTCATATAT+AGG | - | tig0020520:97155-97174 | None:intergenic | 20.0% |
| !! | CTATATATGAATTATGCATA+TGG | + | tig0020520:97153-97172 | Msa1382640:intron | 20.0% |
| !!! | TATTAATTTAATTTGAGTGC+AGG | + | tig0020520:97182-97201 | Msa1382640:intron | 20.0% |
| !! | GACATAAATATATACATACA+AGG | - | tig0020520:97369-97388 | None:intergenic | 20.0% |
| !! | TTGATTCTATACAGAAAAAA+TGG | + | tig0020520:95637-95656 | Msa1382640:exon | 20.0% |
| !! | TGATTCTATACAGAAAAAAT+GGG | + | tig0020520:95638-95657 | Msa1382640:exon | 20.0% |
| !!! | AAGTATCGTTATTAATCATA+TGG | - | tig0020520:95714-95733 | None:intergenic | 20.0% |
| !! | AATCATTATTAGAACTTAGA+CGG | + | tig0020520:95786-95805 | Msa1382640:intron | 20.0% |
| !!! | CTACTATTTTCTTTTTCTTT+TGG | - | tig0020520:96374-96393 | None:intergenic | 20.0% |
| !! | CTAAACATTAATTTCAAACT+TGG | - | tig0020520:96903-96922 | None:intergenic | 20.0% |
| !!! | CAAGTTTGAAATTAATGTTT+AGG | + | tig0020520:96901-96920 | Msa1382640:intron | 20.0% |
| !! | CATATGCATAATTCATATAT+AGG | - | tig0020520:97155-97174 | None:intergenic | 20.0% |
| !! | CTATATATGAATTATGCATA+TGG | + | tig0020520:97153-97172 | Msa1382640:intron | 20.0% |
| !!! | TATTAATTTAATTTGAGTGC+AGG | + | tig0020520:97182-97201 | Msa1382640:intron | 20.0% |
| !! | GACATAAATATATACATACA+AGG | - | tig0020520:97369-97388 | None:intergenic | 20.0% |
| ! | AAGATGAAATTGATGCTTAT+TGG | + | tig0020520:95877-95896 | Msa1382640:CDS | 25.0% |
| !!! | TTTTTTGGAAAAATTTGGTG+TGG | - | tig0020520:96042-96061 | None:intergenic | 25.0% |
| ! | TGCTCCAATTAACAATTATT+AGG | + | tig0020520:96129-96148 | Msa1382640:intron | 25.0% |
| ! | GCTCCAATTAACAATTATTA+GGG | + | tig0020520:96130-96149 | Msa1382640:intron | 25.0% |
| ! | GAACCCTAATAATTGTTAAT+TGG | - | tig0020520:96136-96155 | None:intergenic | 25.0% |
| ! | TACACTTGAAAAAATCAACA+AGG | + | tig0020520:96341-96360 | Msa1382640:intron | 25.0% |
| ! | ACACTTGAAAAAATCAACAA+GGG | + | tig0020520:96342-96361 | Msa1382640:intron | 25.0% |
| !!! | TATTATATATAGTGTTGGTG+GGG | - | tig0020520:96401-96420 | None:intergenic | 25.0% |
| !!! | GTATTATATATAGTGTTGGT+GGG | - | tig0020520:96402-96421 | None:intergenic | 25.0% |
| !! | AGTATTATATATAGTGTTGG+TGG | - | tig0020520:96403-96422 | None:intergenic | 25.0% |
| !! | TAGTTTTCTAATATGCAAGA+AGG | - | tig0020520:96658-96677 | None:intergenic | 25.0% |
| !! | TATATTTTCGGATTTCACTT+AGG | - | tig0020520:96707-96726 | None:intergenic | 25.0% |
| ! | TCAAGTACGTTCATATTAAA+GGG | - | tig0020520:96999-97018 | None:intergenic | 25.0% |
| ! | ACTATAATAATTGGAAGAGT+AGG | - | tig0020520:97067-97086 | None:intergenic | 25.0% |
| ! | AAGATGAAATTGATGCTTAT+TGG | + | tig0020520:95877-95896 | Msa1382640:CDS | 25.0% |
| !!! | TTTTTTGGAAAAATTTGGTG+TGG | - | tig0020520:96042-96061 | None:intergenic | 25.0% |
| ! | TGCTCCAATTAACAATTATT+AGG | + | tig0020520:96129-96148 | Msa1382640:intron | 25.0% |
| ! | GCTCCAATTAACAATTATTA+GGG | + | tig0020520:96130-96149 | Msa1382640:intron | 25.0% |
| ! | GAACCCTAATAATTGTTAAT+TGG | - | tig0020520:96136-96155 | None:intergenic | 25.0% |
| ! | TACACTTGAAAAAATCAACA+AGG | + | tig0020520:96341-96360 | Msa1382640:intron | 25.0% |
| ! | ACACTTGAAAAAATCAACAA+GGG | + | tig0020520:96342-96361 | Msa1382640:intron | 25.0% |
| !!! | TATTATATATAGTGTTGGTG+GGG | - | tig0020520:96401-96420 | None:intergenic | 25.0% |
| !!! | GTATTATATATAGTGTTGGT+GGG | - | tig0020520:96402-96421 | None:intergenic | 25.0% |
| !! | AGTATTATATATAGTGTTGG+TGG | - | tig0020520:96403-96422 | None:intergenic | 25.0% |
| !! | TAGTTTTCTAATATGCAAGA+AGG | - | tig0020520:96658-96677 | None:intergenic | 25.0% |
| !! | TATATTTTCGGATTTCACTT+AGG | - | tig0020520:96707-96726 | None:intergenic | 25.0% |
| ! | TCAAGTACGTTCATATTAAA+GGG | - | tig0020520:96999-97018 | None:intergenic | 25.0% |
| ! | ACTATAATAATTGGAAGAGT+AGG | - | tig0020520:97067-97086 | None:intergenic | 25.0% |
| TCCATTTAGAAATTGCATTG+TGG | + | tig0020520:95600-95619 | Msa1382640:five_prime_UTR | 30.0% | |
| ACCACAATGCAATTTCTAAA+TGG | - | tig0020520:95604-95623 | None:intergenic | 30.0% | |
| ! | AGAAAAAATGGGTTCTCTTA+TGG | + | tig0020520:95649-95668 | Msa1382640:exon | 30.0% |
| TCTTCAATTGATCCTAAATC+AGG | + | tig0020520:95686-95705 | Msa1382640:CDS | 30.0% | |
| AATCATATGGTACCTGATTT+AGG | - | tig0020520:95701-95720 | None:intergenic | 30.0% | |
| ! | GTGCTTAGTATTTTATGTTG+CGG | + | tig0020520:95756-95775 | Msa1382640:intron | 30.0% |
| AGACGGTACTTATATTTATG+AGG | + | tig0020520:95803-95822 | Msa1382640:intron | 30.0% | |
| GACGGTACTTATATTTATGA+GGG | + | tig0020520:95804-95823 | Msa1382640:intron | 30.0% | |
| ! | TTTCATCTTTTGTAAGTGAC+TGG | - | tig0020520:95866-95885 | None:intergenic | 30.0% |
| GAAATCAAAGAAGAAGATAG+AGG | + | tig0020520:95899-95918 | Msa1382640:CDS | 30.0% | |
| ACAAATTGGAAATTGCTGTA+AGG | - | tig0020520:95932-95951 | None:intergenic | 30.0% | |
| CTGAATAGTCTTTGACAAAT+TGG | - | tig0020520:95946-95965 | None:intergenic | 30.0% | |
| CAATTTGTCAAAGACTATTC+AGG | + | tig0020520:95944-95963 | Msa1382640:CDS | 30.0% | |
| AATGAAATGTCAGAGAAAGT+TGG | + | tig0020520:96096-96115 | Msa1382640:intron | 30.0% | |
| ACTCAAACACACAAGAAAAA+TGG | - | tig0020520:96279-96298 | None:intergenic | 30.0% | |
| TTTCTTGTGTGTTTGAGTAA+TGG | + | tig0020520:96281-96300 | Msa1382640:intron | 30.0% | |
| TTACTCTAGTAGAAGAATAC+TGG | - | tig0020520:96528-96547 | None:intergenic | 30.0% | |
| ACGCGACAAACATTAATTAT+TGG | + | tig0020520:96559-96578 | Msa1382640:intron | 30.0% | |
| AATATGCAAGAAGGACTAAA+AGG | - | tig0020520:96649-96668 | None:intergenic | 30.0% | |
| CAAGTACGTTCATATTAAAG+GGG | - | tig0020520:96998-97017 | None:intergenic | 30.0% | |
| GTCAAGTACGTTCATATTAA+AGG | - | tig0020520:97000-97019 | None:intergenic | 30.0% | |
| GAGCAACTTATCAACAAAAA+TGG | + | tig0020520:97029-97048 | Msa1382640:CDS | 30.0% | |
| AACTTATCAACAAAAATGGC+TGG | + | tig0020520:97033-97052 | Msa1382640:CDS | 30.0% | |
| !! | TAATTTAATTTGAGTGCAGG+TGG | + | tig0020520:97185-97204 | Msa1382640:intron | 30.0% |
| TCAATCACTAACTTCATCTA+CGG | - | tig0020520:97320-97339 | None:intergenic | 30.0% | |
| TCCATTTAGAAATTGCATTG+TGG | + | tig0020520:95600-95619 | Msa1382640:five_prime_UTR | 30.0% | |
| ACCACAATGCAATTTCTAAA+TGG | - | tig0020520:95604-95623 | None:intergenic | 30.0% | |
| ! | AGAAAAAATGGGTTCTCTTA+TGG | + | tig0020520:95649-95668 | Msa1382640:exon | 30.0% |
| TCTTCAATTGATCCTAAATC+AGG | + | tig0020520:95686-95705 | Msa1382640:CDS | 30.0% | |
| AATCATATGGTACCTGATTT+AGG | - | tig0020520:95701-95720 | None:intergenic | 30.0% | |
| ! | GTGCTTAGTATTTTATGTTG+CGG | + | tig0020520:95756-95775 | Msa1382640:intron | 30.0% |
| AGACGGTACTTATATTTATG+AGG | + | tig0020520:95803-95822 | Msa1382640:intron | 30.0% | |
| GACGGTACTTATATTTATGA+GGG | + | tig0020520:95804-95823 | Msa1382640:intron | 30.0% | |
| ! | TTTCATCTTTTGTAAGTGAC+TGG | - | tig0020520:95866-95885 | None:intergenic | 30.0% |
| GAAATCAAAGAAGAAGATAG+AGG | + | tig0020520:95899-95918 | Msa1382640:CDS | 30.0% | |
| ACAAATTGGAAATTGCTGTA+AGG | - | tig0020520:95932-95951 | None:intergenic | 30.0% | |
| CTGAATAGTCTTTGACAAAT+TGG | - | tig0020520:95946-95965 | None:intergenic | 30.0% | |
| CAATTTGTCAAAGACTATTC+AGG | + | tig0020520:95944-95963 | Msa1382640:CDS | 30.0% | |
| AATGAAATGTCAGAGAAAGT+TGG | + | tig0020520:96096-96115 | Msa1382640:intron | 30.0% | |
| ACTCAAACACACAAGAAAAA+TGG | - | tig0020520:96279-96298 | None:intergenic | 30.0% | |
| TTTCTTGTGTGTTTGAGTAA+TGG | + | tig0020520:96281-96300 | Msa1382640:intron | 30.0% | |
| TTACTCTAGTAGAAGAATAC+TGG | - | tig0020520:96528-96547 | None:intergenic | 30.0% | |
| ACGCGACAAACATTAATTAT+TGG | + | tig0020520:96559-96578 | Msa1382640:intron | 30.0% | |
| AATATGCAAGAAGGACTAAA+AGG | - | tig0020520:96649-96668 | None:intergenic | 30.0% | |
| CAAGTACGTTCATATTAAAG+GGG | - | tig0020520:96998-97017 | None:intergenic | 30.0% | |
| GTCAAGTACGTTCATATTAA+AGG | - | tig0020520:97000-97019 | None:intergenic | 30.0% | |
| GAGCAACTTATCAACAAAAA+TGG | + | tig0020520:97029-97048 | Msa1382640:CDS | 30.0% | |
| AACTTATCAACAAAAATGGC+TGG | + | tig0020520:97033-97052 | Msa1382640:CDS | 30.0% | |
| !! | TAATTTAATTTGAGTGCAGG+TGG | + | tig0020520:97185-97204 | Msa1382640:intron | 30.0% |
| TCAATCACTAACTTCATCTA+CGG | - | tig0020520:97320-97339 | None:intergenic | 30.0% | |
| CTGTTTCAGCCATACTTAAA+AGG | + | tig0020520:95838-95857 | Msa1382640:intron | 35.0% | |
| !! | TGACTGGTTCCTTTTAAGTA+TGG | - | tig0020520:95850-95869 | None:intergenic | 35.0% |
| !! | TTTGGAAAAATTTGGTGTGG+CGG | - | tig0020520:96039-96058 | None:intergenic | 35.0% |
| !! | TGACTAAGAGCACTACAATT+TGG | + | tig0020520:96429-96448 | Msa1382640:intron | 35.0% |
| ! | ATTTTCGGATTTCACTTAGG+TGG | - | tig0020520:96704-96723 | None:intergenic | 35.0% |
| !! | TGAAACTTCTTTTCAGGATC+AGG | - | tig0020520:96939-96958 | None:intergenic | 35.0% |
| !!! | GACTTCTGAAACTTCTTTTC+AGG | - | tig0020520:96945-96964 | None:intergenic | 35.0% |
| GAACGTACTTGACACAAATT+TGG | + | tig0020520:97007-97026 | Msa1382640:CDS | 35.0% | |
| AATCACTAACTTCATCTACG+GGG | - | tig0020520:97318-97337 | None:intergenic | 35.0% | |
| CAATCACTAACTTCATCTAC+GGG | - | tig0020520:97319-97338 | None:intergenic | 35.0% | |
| CTGTTTCAGCCATACTTAAA+AGG | + | tig0020520:95838-95857 | Msa1382640:intron | 35.0% | |
| !! | TGACTGGTTCCTTTTAAGTA+TGG | - | tig0020520:95850-95869 | None:intergenic | 35.0% |
| !! | TTTGGAAAAATTTGGTGTGG+CGG | - | tig0020520:96039-96058 | None:intergenic | 35.0% |
| !! | TGACTAAGAGCACTACAATT+TGG | + | tig0020520:96429-96448 | Msa1382640:intron | 35.0% |
| ! | ATTTTCGGATTTCACTTAGG+TGG | - | tig0020520:96704-96723 | None:intergenic | 35.0% |
| !! | TGAAACTTCTTTTCAGGATC+AGG | - | tig0020520:96939-96958 | None:intergenic | 35.0% |
| !!! | GACTTCTGAAACTTCTTTTC+AGG | - | tig0020520:96945-96964 | None:intergenic | 35.0% |
| GAACGTACTTGACACAAATT+TGG | + | tig0020520:97007-97026 | Msa1382640:CDS | 35.0% | |
| AATCACTAACTTCATCTACG+GGG | - | tig0020520:97318-97337 | None:intergenic | 35.0% | |
| CAATCACTAACTTCATCTAC+GGG | - | tig0020520:97319-97338 | None:intergenic | 35.0% | |
| ! | AAAATGGGTTCTCTTATGGC+AGG | + | tig0020520:95653-95672 | Msa1382640:exon | 40.0% |
| !! | ATCCAACTTATGGTTTGGTG+CGG | + | tig0020520:96010-96029 | Msa1382640:intron | 40.0% |
| AAAGAAGAAGCAGACAGAGT+TGG | - | tig0020520:96254-96273 | None:intergenic | 40.0% | |
| ATGTTTGTCGCGTCTCAAAT+AGG | - | tig0020520:96552-96571 | None:intergenic | 40.0% | |
| AAACTGTGCTGCATACTTGT+TGG | - | tig0020520:97263-97282 | None:intergenic | 40.0% | |
| ! | CAATTTTGTCGATCCCAAAC+TGG | - | tig0020520:97293-97312 | None:intergenic | 40.0% |
| CCAAAAACGAACAACGCTAT+TGG | - | tig0020520:97425-97444 | None:intergenic | 40.0% | |
| ! | CCAATAGCGTTGTTCGTTTT+TGG | + | tig0020520:97422-97441 | Msa1382640:three_prime_UTR | 40.0% |
| GCAAATCAACGTGTGTTTCT+TGG | + | tig0020520:97487-97506 | Msa1382640:three_prime_UTR | 40.0% | |
| ! | AAAATGGGTTCTCTTATGGC+AGG | + | tig0020520:95653-95672 | Msa1382640:exon | 40.0% |
| !! | ATCCAACTTATGGTTTGGTG+CGG | + | tig0020520:96010-96029 | Msa1382640:intron | 40.0% |
| AAAGAAGAAGCAGACAGAGT+TGG | - | tig0020520:96254-96273 | None:intergenic | 40.0% | |
| ATGTTTGTCGCGTCTCAAAT+AGG | - | tig0020520:96552-96571 | None:intergenic | 40.0% | |
| AAACTGTGCTGCATACTTGT+TGG | - | tig0020520:97263-97282 | None:intergenic | 40.0% | |
| ! | CAATTTTGTCGATCCCAAAC+TGG | - | tig0020520:97293-97312 | None:intergenic | 40.0% |
| CCAAAAACGAACAACGCTAT+TGG | - | tig0020520:97425-97444 | None:intergenic | 40.0% | |
| ! | CCAATAGCGTTGTTCGTTTT+TGG | + | tig0020520:97422-97441 | Msa1382640:three_prime_UTR | 40.0% |
| GCAAATCAACGTGTGTTTCT+TGG | + | tig0020520:97487-97506 | Msa1382640:three_prime_UTR | 40.0% | |
| !! | TACTTGCCACTTTCCAGCAT+GGG | + | tig0020520:95984-96003 | Msa1382640:intron | 45.0% |
| GGCAGATCCAACTTATGGTT+TGG | + | tig0020520:96005-96024 | Msa1382640:intron | 45.0% | |
| ! | AAGAAGCAGACAGAGTTGGT+GGG | - | tig0020520:96250-96269 | None:intergenic | 45.0% |
| ATTAAAGGGGTCCCTTACGT+GGG | - | tig0020520:96985-97004 | None:intergenic | 45.0% | |
| TATTAAAGGGGTCCCTTACG+TGG | - | tig0020520:96986-97005 | None:intergenic | 45.0% | |
| !! | CAGGTGGACTAAGAGTAACT+GGG | + | tig0020520:97201-97220 | Msa1382640:intron | 45.0% |
| TCTGAATGAGCCACCAATGA+TGG | + | tig0020520:97228-97247 | Msa1382640:CDS | 45.0% | |
| TTGGATGCAGCTTCCATCAT+TGG | - | tig0020520:97244-97263 | None:intergenic | 45.0% | |
| ACAGTTTCACGTTGCCAGTT+TGG | + | tig0020520:97276-97295 | Msa1382640:CDS | 45.0% | |
| CAGTTTCACGTTGCCAGTTT+GGG | + | tig0020520:97277-97296 | Msa1382640:CDS | 45.0% | |
| !! | TACTTGCCACTTTCCAGCAT+GGG | + | tig0020520:95984-96003 | Msa1382640:intron | 45.0% |
| GGCAGATCCAACTTATGGTT+TGG | + | tig0020520:96005-96024 | Msa1382640:intron | 45.0% | |
| ! | AAGAAGCAGACAGAGTTGGT+GGG | - | tig0020520:96250-96269 | None:intergenic | 45.0% |
| ATTAAAGGGGTCCCTTACGT+GGG | - | tig0020520:96985-97004 | None:intergenic | 45.0% | |
| TATTAAAGGGGTCCCTTACG+TGG | - | tig0020520:96986-97005 | None:intergenic | 45.0% | |
| !! | CAGGTGGACTAAGAGTAACT+GGG | + | tig0020520:97201-97220 | Msa1382640:intron | 45.0% |
| TCTGAATGAGCCACCAATGA+TGG | + | tig0020520:97228-97247 | Msa1382640:CDS | 45.0% | |
| TTGGATGCAGCTTCCATCAT+TGG | - | tig0020520:97244-97263 | None:intergenic | 45.0% | |
| ACAGTTTCACGTTGCCAGTT+TGG | + | tig0020520:97276-97295 | Msa1382640:CDS | 45.0% | |
| CAGTTTCACGTTGCCAGTTT+GGG | + | tig0020520:97277-97296 | Msa1382640:CDS | 45.0% | |
| !!! | TGTATTTTATTTATTTTTTT+TGG | - | tig0020520:96057-96076 | None:intergenic | 5.0% |
| !! | TATTATATAACTATAATAAT+TGG | - | tig0020520:97076-97095 | None:intergenic | 5.0% |
| !! | TATTATAGTTATATAATAAT+TGG | + | tig0020520:97078-97097 | Msa1382640:intron | 5.0% |
| !!! | TGTATTTTATTTATTTTTTT+TGG | - | tig0020520:96057-96076 | None:intergenic | 5.0% |
| !! | TATTATATAACTATAATAAT+TGG | - | tig0020520:97076-97095 | None:intergenic | 5.0% |
| !! | TATTATAGTTATATAATAAT+TGG | + | tig0020520:97078-97097 | Msa1382640:intron | 5.0% |
| TGGGTTCTCTTATGGCAGGA+TGG | + | tig0020520:95657-95676 | Msa1382640:CDS | 50.0% | |
| GGGTTCTCTTATGGCAGGAT+GGG | + | tig0020520:95658-95677 | Msa1382640:CDS | 50.0% | |
| GGTTCTCTTATGGCAGGATG+GGG | + | tig0020520:95659-95678 | Msa1382640:CDS | 50.0% | |
| TGCTGGAAAGTGGCAAGTAG+AGG | - | tig0020520:95983-96002 | None:intergenic | 50.0% | |
| !! | CTACTTGCCACTTTCCAGCA+TGG | + | tig0020520:95983-96002 | Msa1382640:intron | 50.0% |
| ! | TAAGTTGGATCTGCCCATGC+TGG | - | tig0020520:96000-96019 | None:intergenic | 50.0% |
| GCATGGGCAGATCCAACTTA+TGG | + | tig0020520:96000-96019 | Msa1382640:intron | 50.0% | |
| AGCCGCACCAAACCATAAGT+TGG | - | tig0020520:96015-96034 | None:intergenic | 50.0% | |
| !! | AGAAGCAGACAGAGTTGGTG+GGG | - | tig0020520:96249-96268 | None:intergenic | 50.0% |
| GAAGAAGCAGACAGAGTTGG+TGG | - | tig0020520:96251-96270 | None:intergenic | 50.0% | |
| !! | GCAGGTGGACTAAGAGTAAC+TGG | + | tig0020520:97200-97219 | Msa1382640:intron | 50.0% |
| GATGCAGCTTCCATCATTGG+TGG | - | tig0020520:97241-97260 | None:intergenic | 50.0% | |
| TGGGTTCTCTTATGGCAGGA+TGG | + | tig0020520:95657-95676 | Msa1382640:CDS | 50.0% | |
| GGGTTCTCTTATGGCAGGAT+GGG | + | tig0020520:95658-95677 | Msa1382640:CDS | 50.0% | |
| GGTTCTCTTATGGCAGGATG+GGG | + | tig0020520:95659-95678 | Msa1382640:CDS | 50.0% | |
| TGCTGGAAAGTGGCAAGTAG+AGG | - | tig0020520:95983-96002 | None:intergenic | 50.0% | |
| !! | CTACTTGCCACTTTCCAGCA+TGG | + | tig0020520:95983-96002 | Msa1382640:intron | 50.0% |
| ! | TAAGTTGGATCTGCCCATGC+TGG | - | tig0020520:96000-96019 | None:intergenic | 50.0% |
| GCATGGGCAGATCCAACTTA+TGG | + | tig0020520:96000-96019 | Msa1382640:intron | 50.0% | |
| AGCCGCACCAAACCATAAGT+TGG | - | tig0020520:96015-96034 | None:intergenic | 50.0% | |
| !! | AGAAGCAGACAGAGTTGGTG+GGG | - | tig0020520:96249-96268 | None:intergenic | 50.0% |
| GAAGAAGCAGACAGAGTTGG+TGG | - | tig0020520:96251-96270 | None:intergenic | 50.0% | |
| !! | GCAGGTGGACTAAGAGTAAC+TGG | + | tig0020520:97200-97219 | Msa1382640:intron | 50.0% |
| GATGCAGCTTCCATCATTGG+TGG | - | tig0020520:97241-97260 | None:intergenic | 50.0% | |
| GATCTGCCCATGCTGGAAAG+TGG | - | tig0020520:95993-96012 | None:intergenic | 55.0% | |
| GAAGTCAATGACCATGCCCG+TGG | + | tig0020520:96959-96978 | Msa1382640:CDS | 55.0% | |
| GATCTGCCCATGCTGGAAAG+TGG | - | tig0020520:95993-96012 | None:intergenic | 55.0% | |
| GAAGTCAATGACCATGCCCG+TGG | + | tig0020520:96959-96978 | Msa1382640:CDS | 55.0% | |
| CATGCCCGTGGCCCACGTAA+GGG | + | tig0020520:96971-96990 | Msa1382640:CDS | 65.0% | |
| CATGCCCGTGGCCCACGTAA+GGG | + | tig0020520:96971-96990 | Msa1382640:CDS | 65.0% | |
| CCTTACGTGGGCCACGGGCA+TGG | - | tig0020520:96973-96992 | None:intergenic | 70.0% | |
| CCATGCCCGTGGCCCACGTA+AGG | + | tig0020520:96970-96989 | Msa1382640:CDS | 70.0% | |
| GGGTCCCTTACGTGGGCCAC+GGG | - | tig0020520:96978-96997 | None:intergenic | 70.0% | |
| GGGGTCCCTTACGTGGGCCA+CGG | - | tig0020520:96979-96998 | None:intergenic | 70.0% | |
| CCTTACGTGGGCCACGGGCA+TGG | - | tig0020520:96973-96992 | None:intergenic | 70.0% | |
| CCATGCCCGTGGCCCACGTA+AGG | + | tig0020520:96970-96989 | Msa1382640:CDS | 70.0% | |
| GGGTCCCTTACGTGGGCCAC+GGG | - | tig0020520:96978-96997 | None:intergenic | 70.0% | |
| GGGGTCCCTTACGTGGGCCA+CGG | - | tig0020520:96979-96998 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020520 | gene | 95592 | 97552 | 95592 | ID=Msa1382640;Name=Msa1382640 |
| tig0020520 | mRNA | 95592 | 97552 | 95592 | ID=Msa1382640-mRNA-1;Parent=Msa1382640;Name=Msa1382640-mRNA-1;_AED=0.07;_eAED=0.07;_QI=64|1|1|1|1|1|4|213|141 |
| tig0020520 | exon | 95592 | 95707 | 95592 | ID=Msa1382640-mRNA-1:exon:8176;Parent=Msa1382640-mRNA-1 |
| tig0020520 | exon | 95847 | 95965 | 95847 | ID=Msa1382640-mRNA-1:exon:8177;Parent=Msa1382640-mRNA-1 |
| tig0020520 | exon | 96936 | 97054 | 96936 | ID=Msa1382640-mRNA-1:exon:8178;Parent=Msa1382640-mRNA-1 |
| tig0020520 | exon | 97204 | 97552 | 97204 | ID=Msa1382640-mRNA-1:exon:8179;Parent=Msa1382640-mRNA-1 |
| tig0020520 | five_prime_UTR | 95592 | 95655 | 95592 | ID=Msa1382640-mRNA-1:five_prime_utr;Parent=Msa1382640-mRNA-1 |
| tig0020520 | CDS | 95656 | 95707 | 95656 | ID=Msa1382640-mRNA-1:cds;Parent=Msa1382640-mRNA-1 |
| tig0020520 | CDS | 95847 | 95965 | 95847 | ID=Msa1382640-mRNA-1:cds;Parent=Msa1382640-mRNA-1 |
| tig0020520 | CDS | 96936 | 97054 | 96936 | ID=Msa1382640-mRNA-1:cds;Parent=Msa1382640-mRNA-1 |
| tig0020520 | CDS | 97204 | 97339 | 97204 | ID=Msa1382640-mRNA-1:cds;Parent=Msa1382640-mRNA-1 |
| tig0020520 | three_prime_UTR | 97340 | 97552 | 97340 | ID=Msa1382640-mRNA-1:three_prime_utr;Parent=Msa1382640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
