AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1346920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1346920 MtrunA17_Chr4g0053441 96.382 608 12 1 40 637 222 829 0.0 1191
Msa1346920 MtrunA17_Chr2g0297871 29.338 559 345 11 47 599 27 541 2.18e-60 213
Msa1346920 MtrunA17_Chr4g0050431 30.368 517 324 13 84 588 391 883 1.80e-55 203
Msa1346920 MtrunA17_Chr4g0071991 27.641 568 351 12 39 594 176 695 2.23e-50 188
Msa1346920 MtrunA17_Chr5g0397621 32.193 497 297 14 100 577 385 860 6.64e-49 184
Msa1346920 MtrunA17_Chr3g0136331 29.651 516 317 12 83 573 354 848 1.48e-43 167
Msa1346920 MtrunA17_Chr8g0339181 29.679 529 317 14 66 573 420 914 1.77e-42 164
Msa1346920 MtrunA17_Chr2g0297051 25.980 612 370 15 19 577 407 988 1.38e-40 159
Msa1346920 MtrunA17_Chr4g0052521 25.522 623 364 17 19 577 370 956 2.30e-40 158
Msa1346920 MtrunA17_Chr8g0374321 32.661 248 151 5 45 283 429 669 5.14e-24 107
Msa1346920 MtrunA17_Chr8g0374391 32.955 176 108 4 409 577 30 202 1.37e-16 79.7
Msa1346920 MtrunA17_Chr8g0374331 32.955 176 108 4 409 577 37 209 1.51e-16 79.7
Msa1346920 MtrunA17_Chr8g0374371 34.014 147 88 3 100 238 42 187 3.49e-13 69.7
Msa1346920 MtrunA17_Chr7g0263361 27.982 218 113 8 406 580 616 832 7.20e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1346920 AT4G37270.1 76.401 589 128 2 40 618 218 805 0.0 907
Msa1346920 AT5G21930.2 31.022 548 311 14 64 573 322 840 4.08e-51 190
Msa1346920 AT5G21930.1 31.022 548 311 14 64 573 322 840 4.08e-51 190
Msa1346920 AT4G30110.1 27.481 524 344 11 82 599 203 696 9.20e-51 189
Msa1346920 AT4G30110.2 27.481 524 344 11 82 599 203 696 9.20e-51 189
Msa1346920 AT2G19110.2 28.488 516 326 15 93 599 224 705 1.71e-50 189
Msa1346920 AT2G19110.3 28.488 516 326 15 93 599 224 705 1.71e-50 189
Msa1346920 AT2G19110.1 28.488 516 326 15 93 599 224 705 1.71e-50 189
Msa1346920 AT4G33520.2 29.559 521 321 15 84 588 402 892 1.32e-48 183
Msa1346920 AT4G33520.3 29.767 514 321 15 84 580 402 892 1.76e-48 183
Msa1346920 AT5G21930.4 31.311 511 285 13 64 536 322 804 5.90e-48 181
Msa1346920 AT1G63440.1 31.548 504 292 15 100 577 478 954 4.61e-47 179
Msa1346920 AT5G44790.1 28.488 516 317 14 89 575 464 956 1.04e-44 172
Msa1346920 AT5G21930.3 29.380 548 297 16 64 573 322 817 1.23e-40 159
Msa1346920 AT4G30120.2 25.616 406 252 10 39 436 19 382 2.27e-30 123
Msa1346920 AT4G30120.1 25.616 406 252 10 39 436 178 541 2.22e-29 123

Find 201 sgRNAs with CRISPR-Local

Find 641 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGAGGTTTGATAGAAAT+TGG 0.118156 tig0009285:+14394 None:intergenic
GGCTTCCCTTCCGTCAGTTT+TGG 0.178850 tig0009285:-5912 Msa1346920:CDS
GGACGCTATCTTAAAATAAT+AGG 0.188756 tig0009285:+5130 None:intergenic
TCAATTGCTATTGCTGTTCT+TGG 0.210359 tig0009285:-11527 Msa1346920:CDS
TATGATTATGATTATGAGTA+TGG 0.221106 tig0009285:+14299 None:intergenic
GGCATTGTCTAGCATATTCT+TGG 0.228426 tig0009285:-5933 Msa1346920:CDS
TGAGAGAATCAGAGTTTATT+AGG 0.252527 tig0009285:+14590 None:intergenic
CAAAGGTGGCTGGATGAATT+TGG 0.281364 tig0009285:-11581 Msa1346920:CDS
TCCAGCCACCTTTGAAGTTT+AGG 0.293991 tig0009285:+11590 None:intergenic
CGACCAGAATGAACGAGTTT+TGG 0.294272 tig0009285:+14035 None:intergenic
GCTATTAATGCATCTTCTTA+TGG 0.295250 tig0009285:-8590 Msa1346920:CDS
GGATTTGATTCTTGTGGTTT+TGG 0.298046 tig0009285:+14447 None:intergenic
TTTCAAATGGAATAATAAAA+TGG 0.300476 tig0009285:-5088 Msa1346920:three_prime_UTR
ACTTCTCGTGCTGTTATAAC+AGG 0.312428 tig0009285:+5032 None:intergenic
ACCATTGCATTTGATAAAAC+AGG 0.313148 tig0009285:-9660 Msa1346920:CDS
GTCAATCCATTTGGTAGCTT+TGG 0.315025 tig0009285:+14168 None:intergenic
GCAACTTATCTTCAGGCTTC+AGG 0.315496 tig0009285:+7429 None:intergenic
TATTTGAAATCAAATGTATT+AGG 0.327072 tig0009285:+12947 None:intergenic
TCAAGAACAAGTGCAAATTC+TGG 0.329012 tig0009285:+12989 None:intergenic
TGGTCGCATTTCCGTTGGTT+GGG 0.332817 tig0009285:-14018 Msa1346920:CDS
ACTCAAAGGTGGACATGTTC+TGG 0.334899 tig0009285:-9703 Msa1346920:CDS
AGAGAGGTTTGATAGAAATT+GGG 0.342658 tig0009285:+14395 None:intergenic
AAGGCAATTGAGCCTGTTTA+CGG 0.342799 tig0009285:-9609 Msa1346920:CDS
ATATGACCTATTATATTGTT+TGG 0.343952 tig0009285:+14615 None:intergenic
AAAGGATATCTCAAGAGATA+TGG 0.345113 tig0009285:-7399 Msa1346920:CDS
TGTCCAAAACTCGTTCATTC+TGG 0.352789 tig0009285:-14038 Msa1346920:CDS
GGTTCTATCTACAGAGCCTT+AGG 0.363004 tig0009285:-10775 Msa1346920:CDS
GACAGGTTTGATGAGTGATT+TGG 0.363726 tig0009285:+14057 None:intergenic
TTCCATTTGAAAGGCAAAAC+GGG 0.367247 tig0009285:+5099 None:intergenic
AAAGTTGGAGATAGAGTTCC+TGG 0.368979 tig0009285:-12474 Msa1346920:CDS
CAACTTCCAAACAATATAAT+AGG 0.369014 tig0009285:-14621 Msa1346920:five_prime_UTR
CACTTGCTGCTGCAACTGTT+GGG 0.374065 tig0009285:-6216 Msa1346920:CDS
CTGTAATATATCATGCTTCC+AGG 0.374765 tig0009285:+5372 None:intergenic
TGAAGTTGTCTGCCGAGATT+TGG 0.379930 tig0009285:+6099 None:intergenic
GACGCTATCTTAAAATAATA+GGG 0.379983 tig0009285:+5131 None:intergenic
CATGATATATTACAGTTGAT+TGG 0.380717 tig0009285:-5364 Msa1346920:CDS
TGCCTTGGCTGTGGCTCCAT+TGG 0.384104 tig0009285:-10728 Msa1346920:CDS
AATCTAGACTCTCCTCTCTT+AGG 0.385080 tig0009285:-5333 Msa1346920:CDS
TATGATTATGAGTATGGTTA+TGG 0.386196 tig0009285:+14305 None:intergenic
ATGATGGAGAATGAGGAATT+TGG 0.390636 tig0009285:+14366 None:intergenic
CTGGTCGCATTTCCGTTGGT+TGG 0.392485 tig0009285:-14019 Msa1346920:CDS
AATACCCCTTGTAAATGTAT+AGG 0.402784 tig0009285:-5184 Msa1346920:three_prime_UTR
AGTGAGTGGAATTTGGTAGA+AGG 0.406840 tig0009285:+14481 None:intergenic
ACATGACGCAACTTATCTTC+AGG 0.418228 tig0009285:+7422 None:intergenic
ATTCGCTAGGTCAATCCATT+TGG 0.420166 tig0009285:+14159 None:intergenic
GCACTTGCTGCTGCAACTGT+TGG 0.421771 tig0009285:-6217 Msa1346920:CDS
TCTCTTAGGACAAATATAAC+AGG 0.423503 tig0009285:-5319 Msa1346920:CDS
ATAGGGAATGTCCAATACTT+TGG 0.425078 tig0009285:+5148 None:intergenic
TAGGGAATGTCCAATACTTT+GGG 0.426341 tig0009285:+5149 None:intergenic
AGTGATTTGGGCAAAGTATG+AGG 0.430434 tig0009285:+14070 None:intergenic
ATTACCATTGAGCACTTGAC+AGG 0.431899 tig0009285:-12519 Msa1346920:CDS
ACAGGTTTGATGAGTGATTT+GGG 0.433483 tig0009285:+14058 None:intergenic
TGTTGCGGCAGCCATGGAAA+AGG 0.442091 tig0009285:-9514 Msa1346920:CDS
CTAATGCGATGACCGTAAAC+AGG 0.447398 tig0009285:+9597 None:intergenic
ACAGTTGCAGCAGCAAGTGC+TGG 0.448739 tig0009285:+6220 None:intergenic
GTGAGTGGAATTTGGTAGAA+GGG 0.450947 tig0009285:+14482 None:intergenic
ATTCCATTTGAAAGGCAAAA+CGG 0.453876 tig0009285:+5098 None:intergenic
TTGGTCCACTTGTATTTAAG+TGG 0.454297 tig0009285:-11508 Msa1346920:CDS
TTTGAGTACTTTCCTGGTAG+AGG 0.454663 tig0009285:-9076 Msa1346920:CDS
TACTGGTGGACTTGTATTCA+AGG 0.458170 tig0009285:-9628 Msa1346920:CDS
ACCCAAGTGATGCTTTCAAT+AGG 0.465409 tig0009285:+8672 None:intergenic
AGGAACTCTATCTCCAACTT+TGG 0.466602 tig0009285:+12476 None:intergenic
GGTTGATGTTAAAGAGTTGA+AGG 0.467608 tig0009285:-13020 Msa1346920:CDS
CTGGAGGATAGGCCTCGTCC+AGG 0.469698 tig0009285:-7578 Msa1346920:CDS
TCAAAATGATACCTTCCAAT+GGG 0.470455 tig0009285:+9480 None:intergenic
ACCTAAACTTCAAAGGTGGC+TGG 0.472188 tig0009285:-11591 Msa1346920:CDS
TTGCATTCCCACCTGTGAAA+AGG 0.475193 tig0009285:-9547 Msa1346920:CDS
ATTTCTTCCATTGTGGATAA+CGG 0.475920 tig0009285:-5888 Msa1346920:intron
GGTCGCATTTCCGTTGGTTG+GGG 0.477467 tig0009285:-14017 Msa1346920:intron
AAACCTCTGGAGGCCAAAGT+TGG 0.479488 tig0009285:-12489 Msa1346920:CDS
TGCAGCATCACCATGTGCCT+TGG 0.480763 tig0009285:-10743 Msa1346920:CDS
GTATTTCACAAGTCGTTCAA+TGG 0.480835 tig0009285:-13041 Msa1346920:CDS
TGGAGGATAGGCCTCGTCCA+GGG 0.482722 tig0009285:-7577 Msa1346920:CDS
TTCCGTGTGATGATGTTAAC+TGG 0.483577 tig0009285:-7515 Msa1346920:CDS
ATCACCATGTGCCTTGGCTG+TGG 0.483615 tig0009285:-10737 Msa1346920:CDS
AACAACGAAGTTTATGATGA+TGG 0.484541 tig0009285:+14350 None:intergenic
GTTTCGCCAAAGCTACCAAA+TGG 0.487686 tig0009285:-14174 Msa1346920:five_prime_UTR
GGCGGTGCAAGGAACATAGA+TGG 0.488667 tig0009285:-12453 Msa1346920:CDS
TCCAAAACTTGTTACCTCTC+CGG 0.488744 tig0009285:+12871 None:intergenic
GTGGGATCATATGTCCTTGT+TGG 0.491264 tig0009285:-12896 Msa1346920:CDS
CGTTGATTCACCTGGAGGAT+AGG 0.491810 tig0009285:-7589 Msa1346920:CDS
CATTCTGGTCGCATTTCCGT+TGG 0.493184 tig0009285:-14023 Msa1346920:CDS
TAAATGAACCATCCTGGTCC+TGG 0.493505 tig0009285:-5390 Msa1346920:CDS
GAAATTGGGGATGTGCGAAT+AGG 0.494228 tig0009285:+14409 None:intergenic
GGCTTAATTATGGTTGGTGA+AGG 0.494682 tig0009285:-6256 Msa1346920:CDS
ATCGATGATGCGAATCTCAC+TGG 0.494904 tig0009285:-14217 Msa1346920:five_prime_UTR
TGGTTCATTTAAACCACGTA+TGG 0.495446 tig0009285:+5402 None:intergenic
AATAGGAAAAGCGAGGTTAG+AGG 0.496704 tig0009285:+14426 None:intergenic
TAATAAAATGGCAAATATCA+AGG 0.499878 tig0009285:-5076 Msa1346920:three_prime_UTR
GATGTGAAGTGAGTGGAATT+TGG 0.503063 tig0009285:+14474 None:intergenic
GTTGCGGCAGCCATGGAAAA+GGG 0.505287 tig0009285:-9513 Msa1346920:CDS
GTTAGAGGATTTGATTCTTG+TGG 0.505400 tig0009285:+14441 None:intergenic
TTCAAAATGATACCTTCCAA+TGG 0.509760 tig0009285:+9479 None:intergenic
TCATATGTCCTTGTTGGTGC+CGG 0.510228 tig0009285:-12890 Msa1346920:CDS
AGGAATTTGGAAGAATAGAG+AGG 0.513522 tig0009285:+14379 None:intergenic
GATTAAGCAAAATGTAGCTC+TGG 0.514025 tig0009285:-5954 Msa1346920:CDS
AAGGATATCTCAAGAGATAT+GGG 0.514882 tig0009285:-7398 Msa1346920:intron
TGCTGTTAACAGTAGCAGTA+AGG 0.516956 tig0009285:+9053 None:intergenic
AACCTATTGAAAGCATCACT+TGG 0.517138 tig0009285:-8674 Msa1346920:CDS
CTACAGAGCCTTAGGGCTCA+TGG 0.522521 tig0009285:-10767 Msa1346920:CDS
CGGTCATCGCATTAGAAACA+AGG 0.525626 tig0009285:-9589 Msa1346920:CDS
AAAGGAAGCTCTTGCTGTTG+CGG 0.526765 tig0009285:-9529 Msa1346920:CDS
TTCCCCTGTCAAGTGCTCAA+TGG 0.526856 tig0009285:+12515 None:intergenic
AGATAAGTTGCGTCATGTAA+AGG 0.529752 tig0009285:-7417 Msa1346920:CDS
TCTTGCTGTTGCGGCAGCCA+TGG 0.531269 tig0009285:-9520 Msa1346920:CDS
TGTTATAACAGCACGAGAAG+TGG 0.532474 tig0009285:-5030 Msa1346920:three_prime_UTR
GTTATGATCGGTGTGATTTG+CGG 0.532890 tig0009285:+14327 None:intergenic
GAGAGGTTTGATAGAAATTG+GGG 0.535581 tig0009285:+14396 None:intergenic
GTTTATGATGATGGAGAATG+AGG 0.537798 tig0009285:+14359 None:intergenic
TCTCCAACTTTGGCCTCCAG+AGG 0.537839 tig0009285:+12486 None:intergenic
GTGATTTGGGCAAAGTATGA+GGG 0.538012 tig0009285:+14071 None:intergenic
TTTGTTGATGCAGCTTGCAG+AGG 0.543905 tig0009285:-10796 Msa1346920:intron
TATCGTGGACAGGAACCCTC+TGG 0.544668 tig0009285:+12924 None:intergenic
TATATCATGCTTCCAGGACC+AGG 0.545479 tig0009285:+5378 None:intergenic
GACAGGGGAAGTCAAACCTC+TGG 0.545837 tig0009285:-12502 Msa1346920:CDS
GCAGGTCACGTTGATTCACC+TGG 0.549731 tig0009285:-7597 Msa1346920:intron
TGGAAAACTTCACAATCTAC+AGG 0.552595 tig0009285:+12555 None:intergenic
AAGATGCCTATACATTTACA+AGG 0.555098 tig0009285:+5178 None:intergenic
ATCTCGGCAGACAACTTCAC+TGG 0.558427 tig0009285:-6095 Msa1346920:intron
AAGGGCACTACCCACCCCAT+TGG 0.559044 tig0009285:-9495 Msa1346920:CDS
CATTCTGTATTGCCAAATCT+CGG 0.561945 tig0009285:-6111 Msa1346920:CDS
TATATTACAGTTGATTGGCA+AGG 0.564000 tig0009285:-5359 Msa1346920:CDS
TGAATAGACCTAAACTTCAA+AGG 0.565264 tig0009285:-11598 Msa1346920:CDS
GTACCTGGTGTACTAAAGAA+TGG 0.569445 tig0009285:+11485 None:intergenic
CGAGATTTGGCAATACAGAA+TGG 0.570862 tig0009285:+6112 None:intergenic
ATGATACCTTCCAATGGGGT+GGG 0.570870 tig0009285:+9485 None:intergenic
AATGATACCTTCCAATGGGG+TGG 0.571569 tig0009285:+9484 None:intergenic
CCCACAGTTATATCGTGGAC+AGG 0.573819 tig0009285:+12914 None:intergenic
GTTCTATCTACAGAGCCTTA+GGG 0.574940 tig0009285:-10774 Msa1346920:CDS
CCATTGCATTTGATAAAACA+GGG 0.581955 tig0009285:-9659 Msa1346920:CDS
ATAGAGTTCCTGGCGGTGCA+AGG 0.582278 tig0009285:-12464 Msa1346920:CDS
GTTTGTCTCAACTCCATACG+TGG 0.582771 tig0009285:-5415 Msa1346920:CDS
TCTATGTTCCTTGCACCGCC+AGG 0.583235 tig0009285:+12456 None:intergenic
TGCTGCAACCATGAGCCCTA+AGG 0.586386 tig0009285:+10759 None:intergenic
TGCTACTGTTAACAGCATTG+AGG 0.587811 tig0009285:-9047 Msa1346920:intron
TGCACAGGAGCTGATTGCTG+TGG 0.588322 tig0009285:+10699 None:intergenic
AAAACAGGGACATTGACTAC+TGG 0.589422 tig0009285:-9645 Msa1346920:CDS
TCCATTTGAAAGGCAAAACG+GGG 0.589547 tig0009285:+5100 None:intergenic
TAAAATGAATTGCAGGGCTG+TGG 0.592347 tig0009285:-9146 Msa1346920:intron
TGGCCATTCTTTAGTACACC+AGG 0.592719 tig0009285:-11488 Msa1346920:intron
GAAATCCCAAAACTGACGGA+AGG 0.592946 tig0009285:+5906 None:intergenic
TTACCATTGAGCACTTGACA+GGG 0.593656 tig0009285:-12518 Msa1346920:CDS
ACAGGGACATTGACTACTGG+TGG 0.595895 tig0009285:-9642 Msa1346920:CDS
TTGTTATAGTCAGGAGCTGG+AGG 0.596664 tig0009285:-8701 Msa1346920:intron
GTGGTTTAAATGAACCATCC+TGG 0.596951 tig0009285:-5396 Msa1346920:CDS
AATGGCCACTTAAATACAAG+TGG 0.597154 tig0009285:+11503 None:intergenic
GCTCTCTCAAGAAATTCGCT+AGG 0.601109 tig0009285:+14146 None:intergenic
TAGTTTCTTACCCCAACCAA+CGG 0.601581 tig0009285:+14007 None:intergenic
TGGTAATTGTGGCACCGCCG+TGG 0.601583 tig0009285:+12535 None:intergenic
GTAGCAGTAAGGCCTCTACC+AGG 0.601894 tig0009285:+9064 None:intergenic
ACCTATTGAAAGCATCACTT+GGG 0.602175 tig0009285:-8673 Msa1346920:CDS
CTTGTTACGGGTCATTACAG+TGG 0.604049 tig0009285:+14654 None:intergenic
TGCCAATGGAGCCACAGCCA+AGG 0.608775 tig0009285:+10726 None:intergenic
TGTTATATTTGTCCTAAGAG+AGG 0.609994 tig0009285:+5321 None:intergenic
TGGTGTGGATGTGAAGTGAG+TGG 0.610521 tig0009285:+14467 None:intergenic
CATCACAGGTAACAAAGACA+TGG 0.612204 tig0009285:-11670 Msa1346920:intron
ATTGCTGTGGCATATGCCAA+TGG 0.613253 tig0009285:+10712 None:intergenic
CTGTGGTTGAACATAGTGAA+GGG 0.614550 tig0009285:-9129 Msa1346920:CDS
TGATTTGGGCAAAGTATGAG+GGG 0.620042 tig0009285:+14072 None:intergenic
GCACTACCCACCCCATTGGA+AGG 0.620348 tig0009285:-9491 Msa1346920:intron
ATTTGATTTCAAATACCAGA+GGG 0.624066 tig0009285:-12939 Msa1346920:CDS
AAATCCCAAAACTGACGGAA+GGG 0.625234 tig0009285:+5907 None:intergenic
ATGCAGGTTCTCTTACATGA+AGG 0.625523 tig0009285:-5451 Msa1346920:intron
GGAGCCACAGCCAAGGCACA+TGG 0.627092 tig0009285:+10733 None:intergenic
TGTCATACCGTTATCCACAA+TGG 0.627678 tig0009285:+5881 None:intergenic
CTACACACATCACAAATTCG+CGG 0.629168 tig0009285:+5279 None:intergenic
AGATGCCTATACATTTACAA+GGG 0.630095 tig0009285:+5179 None:intergenic
GCGTTACAGCAAAGTTGTTG+TGG 0.631820 tig0009285:-11555 Msa1346920:CDS
AAGAGAGTTGCAAGTGCTGT+GGG 0.633487 tig0009285:-7473 Msa1346920:CDS
TTGCAGGGCATATTACTCAA+AGG 0.636255 tig0009285:-9717 Msa1346920:intron
AAAGAGAGTTGCAAGTGCTG+TGG 0.636430 tig0009285:-7474 Msa1346920:CDS
GCTGTGGTTGAACATAGTGA+AGG 0.636595 tig0009285:-9130 Msa1346920:CDS
ACAGGTAACAAAGACATGGA+AGG 0.636600 tig0009285:-11666 Msa1346920:intron
TTACCTCTCCGGCACCAACA+AGG 0.637057 tig0009285:+12882 None:intergenic
CAGGGCATATTACTCAAAGG+TGG 0.637638 tig0009285:-9714 Msa1346920:CDS
TCCTGTCCACGATATAACTG+TGG 0.638620 tig0009285:-12915 Msa1346920:CDS
CCTGTCCACGATATAACTGT+GGG 0.640509 tig0009285:-12914 Msa1346920:CDS
TGTCCTTGTTGGTGCCGGAG+AGG 0.641083 tig0009285:-12885 Msa1346920:intron
AGATGGTAGAATAATTGTGA+AGG 0.643350 tig0009285:-12436 Msa1346920:intron
TCATGCTTCCAGGACCAGGA+TGG 0.644114 tig0009285:+5382 None:intergenic
ATGATCCCACAGTTATATCG+TGG 0.648538 tig0009285:+12909 None:intergenic
GTTACGGGTCATTACAGTGG+AGG 0.648616 tig0009285:+14657 None:intergenic
AGTATGGTTATGGTTATGAT+CGG 0.651815 tig0009285:+14315 None:intergenic
GGAAGAAATCCCAAAACTGA+CGG 0.653538 tig0009285:+5902 None:intergenic
CTTCTCGTGCTGTTATAACA+GGG 0.657074 tig0009285:+5033 None:intergenic
CACCAGTTAACATCATCACA+CGG 0.657313 tig0009285:+7513 None:intergenic
CATTTGATTTCAAATACCAG+AGG 0.660551 tig0009285:-12940 Msa1346920:CDS
TACCATTGAGCACTTGACAG+GGG 0.669528 tig0009285:-12517 Msa1346920:CDS
GGAGTTGAGACAAACAAGCA+AGG 0.669963 tig0009285:+5423 None:intergenic
ATAGACCTAAACTTCAAAGG+TGG 0.670685 tig0009285:-11595 Msa1346920:CDS
AGGGGAAGTCAAACCTCTGG+AGG 0.671091 tig0009285:-12499 Msa1346920:CDS
CAGGTTCTCTTACATGAAGG+CGG 0.671593 tig0009285:-5448 Msa1346920:CDS
AGTAGAGAAATAGTGTATTG+CGG 0.672392 tig0009285:-5245 Msa1346920:three_prime_UTR
GATGCCTATACATTTACAAG+GGG 0.678179 tig0009285:+5180 None:intergenic
CAAGTGCTCAATGGTAATTG+TGG 0.696113 tig0009285:+12524 None:intergenic
CAAAATGATACCTTCCAATG+GGG 0.711661 tig0009285:+9481 None:intergenic
CCATTTGAAAGGCAAAACGG+GGG 0.719580 tig0009285:+5101 None:intergenic
TTTCAACAGAGACAGAAGGG+AGG 0.724915 tig0009285:+9101 None:intergenic
GGTCACGTTGATTCACCTGG+AGG 0.730026 tig0009285:-7594 Msa1346920:CDS
ATGTGCGAATAGGAAAAGCG+AGG 0.738586 tig0009285:+14419 None:intergenic
GTTGGAGATAGAGTTCCTGG+CGG 0.796828 tig0009285:-12471 Msa1346920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAAAATATATTTTTTA+AGG + tig0009285:11761-11780 None:intergenic 0.0%
!! AAAGAAAAAAATAATTTACA+TGG - tig0009285:8442-8461 Msa1346920:intron 10.0%
!! AAGAAAAAAATAATTTACAT+GGG - tig0009285:8443-8462 Msa1346920:intron 10.0%
!!! TTATTCAAAATTTTAAACAT+GGG - tig0009285:9902-9921 Msa1346920:intron 10.0%
!!! TACCTTTTTATTAATTATAA+GGG + tig0009285:11135-11154 None:intergenic 10.0%
!!! AAATAATTTTCAAAATAAAC+AGG + tig0009285:11569-11588 None:intergenic 10.0%
!!! TTTATATAAAATCAATTTTG+TGG - tig0009285:11789-11808 Msa1346920:intron 10.0%
!! TTTAGTAAAAATTATTATTG+TGG - tig0009285:12531-12550 Msa1346920:CDS 10.0%
!! TTAGTAAAAATTATTATTGT+GGG - tig0009285:12532-12551 Msa1346920:CDS 10.0%
!! TACAAAATTATTATAAAATG+AGG - tig0009285:12620-12639 Msa1346920:intron 10.0%
!! AGTATTAAGAATTTAAAAAA+AGG + tig0009285:12655-12674 None:intergenic 10.0%
!! AGGATATTTAAAAATAAATT+AGG + tig0009285:12733-12752 None:intergenic 10.0%
!! AAAAAAATAAAAATTGAGAA+AGG - tig0009285:13039-13058 Msa1346920:CDS 10.0%
!! AAAAAATAAAAATTGAGAAA+GGG - tig0009285:13040-13059 Msa1346920:CDS 10.0%
!!! TTTTAAAGAAAAAAAAAATG+TGG - tig0009285:13625-13644 Msa1346920:intron 10.0%
!!! TTTATTTTCTTTAGAAATTA+TGG - tig0009285:13930-13949 Msa1346920:intron 10.0%
!! AGAAAAATAATACTTTATTA+GGG + tig0009285:14103-14122 None:intergenic 10.0%
!! AAGAAAAATAATACTTTATT+AGG + tig0009285:14104-14123 None:intergenic 10.0%
!!! ACATTCAACTTTTATAATAA+TGG - tig0009285:5117-5136 Msa1346920:three_prime_UTR 15.0%
!! TTAATCAAACAAATACATTA+TGG - tig0009285:5998-6017 Msa1346920:intron 15.0%
!!! TATTTGAAATCAAATGTATT+AGG + tig0009285:6735-6754 None:intergenic 15.0%
!!! TCAATATATATTATTTTAGG+AGG - tig0009285:7559-7578 Msa1346920:CDS 15.0%
!!! TATAATGGAGATATTTATAA+TGG + tig0009285:7725-7744 None:intergenic 15.0%
!! TTAAATGATAATTAAAGGAA+AGG + tig0009285:8324-8343 None:intergenic 15.0%
!! TTCCTTTAATTATCATTTAA+TGG - tig0009285:8324-8343 Msa1346920:intron 15.0%
!! TTCCATTAAATGATAATTAA+AGG + tig0009285:8329-8348 None:intergenic 15.0%
!!! GGAAAAAAAAAACTTTATTT+TGG - tig0009285:9341-9360 Msa1346920:intron 15.0%
!!! CTTATTCAAAATTTTAAACA+TGG - tig0009285:9901-9920 Msa1346920:intron 15.0%
!! CTATATTTATATATTTGAGA+TGG + tig0009285:10459-10478 None:intergenic 15.0%
!!! CTACCTTTTTATTAATTATA+AGG + tig0009285:11136-11155 None:intergenic 15.0%
!!! AGAAATGATATTTTTTATGT+TGG - tig0009285:11257-11276 Msa1346920:intron 15.0%
!! ACCAATTTCTAAATTTAATA+AGG - tig0009285:11386-11405 Msa1346920:intron 15.0%
!! ACCTTATTAAATTTAGAAAT+TGG + tig0009285:11390-11409 None:intergenic 15.0%
!!! TAACCAAATTAATTTTTTAG+AGG - tig0009285:11912-11931 Msa1346920:intron 15.0%
!!! AAAATTTTAGGTGAAAAAAA+AGG + tig0009285:11938-11957 None:intergenic 15.0%
!! TGTTAGAAATAATGTAAATA+GGG - tig0009285:12380-12399 Msa1346920:intron 15.0%
!!! TATATTTATTCATTAGTCTA+CGG + tig0009285:12586-12605 None:intergenic 15.0%
!! TAAGAATTTAAAAAAAGGAA+TGG + tig0009285:12650-12669 None:intergenic 15.0%
!! GTGTTTATATAACAAAAAAA+GGG + tig0009285:12704-12723 None:intergenic 15.0%
!! TGTGTTTATATAACAAAAAA+AGG + tig0009285:12705-12724 None:intergenic 15.0%
!! AAAAATAAAAATTGAGAAAG+GGG - tig0009285:13041-13060 Msa1346920:CDS 15.0%
!! GAAAAATAATACTTTATTAG+GGG + tig0009285:14102-14121 None:intergenic 15.0%
!!! ATTTTATTATTCCATTTGAA+AGG + tig0009285:14592-14611 None:intergenic 15.0%
!! TTTCAAATGGAATAATAAAA+TGG - tig0009285:14591-14610 Msa1346920:five_prime_UTR 15.0%
!!! TTGTTTGTTTTTTCTTGTTA+CGG + tig0009285:5041-5060 None:intergenic 20.0%
!! ATATGACCTATTATATTGTT+TGG + tig0009285:5067-5086 None:intergenic 20.0%
!! TATGATTATGATTATGAGTA+TGG + tig0009285:5383-5402 None:intergenic 20.0%
!!! GTTTTTTTCATATACTATCA+TGG - tig0009285:6405-6424 Msa1346920:intron 20.0%
!!! AATAAGTTGAAAACAACTTA+TGG - tig0009285:6445-6464 Msa1346920:intron 20.0%
!!! TTTGATTCGTTTAATTTGAA+TGG - tig0009285:6599-6618 Msa1346920:intron 20.0%
!!! TTTTGGAATTTTAATTGCTT+GGG - tig0009285:6824-6843 Msa1346920:intron 20.0%
!!! TTTTTACTACAATTGTTAGT+TGG - tig0009285:6935-6954 Msa1346920:intron 20.0%
!! TGAAACTTGGTTAATTATAA+TGG + tig0009285:7740-7759 None:intergenic 20.0%
!! TTGACAAAGATTGAAAAATA+AGG - tig0009285:7802-7821 Msa1346920:intron 20.0%
!! ATTATCATTTAATGGAAATG+TGG - tig0009285:8332-8351 Msa1346920:intron 20.0%
!! GCTGAAATATAATTATATGA+AGG + tig0009285:8853-8872 None:intergenic 20.0%
!!! TTTTATTACACTGTTGAATA+TGG - tig0009285:9651-9670 Msa1346920:CDS 20.0%
!! TGCTAACTATATGTTATAAT+GGG - tig0009285:10845-10864 Msa1346920:intron 20.0%
!!! GTTTTTATTTTGTTATAGTC+AGG - tig0009285:10969-10988 Msa1346920:intron 20.0%
!! TGCCCTTATAATTAATAAAA+AGG - tig0009285:11130-11149 Msa1346920:intron 20.0%
!!! AGATTTAATGTGTTTTGTTT+GGG + tig0009285:11615-11634 None:intergenic 20.0%
!! GTGTTAGAAATAATGTAAAT+AGG - tig0009285:12379-12398 Msa1346920:intron 20.0%
!!! TTTTCTTATTTCTCTCAATA+CGG - tig0009285:12454-12473 Msa1346920:CDS 20.0%
!!! ATATTTATTCATTAGTCTAC+GGG + tig0009285:12585-12604 None:intergenic 20.0%
!! TATGCAAAATTGGAAAAATT+AGG + tig0009285:12764-12783 None:intergenic 20.0%
!! AGGAAATAATTATGCAAAAT+TGG + tig0009285:12774-12793 None:intergenic 20.0%
!! CACAAAACAAAAATTGAATT+AGG + tig0009285:12794-12813 None:intergenic 20.0%
!! TTTCAAAAAACTATAAGAGT+GGG + tig0009285:12957-12976 None:intergenic 20.0%
!!! TTTTCAAAAAACTATAAGAG+TGG + tig0009285:12958-12977 None:intergenic 20.0%
!! TGAAAAATAACCATAGAATA+AGG + tig0009285:14177-14196 None:intergenic 20.0%
!! TAATAAAATGGCAAATATCA+AGG - tig0009285:14603-14622 Msa1346920:five_prime_UTR 20.0%
!!! TGTTTGTTTTTTCTTGTTAC+GGG + tig0009285:5040-5059 None:intergenic 25.0%
! CAACTTCCAAACAATATAAT+AGG - tig0009285:5058-5077 Msa1346920:three_prime_UTR 25.0%
!! TATGAAATTGCTTCCATTTT+TGG + tig0009285:5171-5190 None:intergenic 25.0%
! TATGATTATGAGTATGGTTA+TGG + tig0009285:5377-5396 None:intergenic 25.0%
!!! AGCTTTTGCAACTATTTTTA+TGG - tig0009285:5910-5929 Msa1346920:CDS 25.0%
!!! GCTTTTGCAACTATTTTTAT+GGG - tig0009285:5911-5930 Msa1346920:CDS 25.0%
!!! CTTTTGCAACTATTTTTATG+GGG - tig0009285:5912-5931 Msa1346920:CDS 25.0%
! ATGTTTAATCTTGCACATAT+TGG - tig0009285:5965-5984 Msa1346920:intron 25.0%
! AAATACATTATGGTCGTATT+TGG - tig0009285:6008-6027 Msa1346920:intron 25.0%
!!! TTCTAAGATAGAATCAATTC+CGG - tig0009285:6213-6232 Msa1346920:CDS 25.0%
!! TTTTCATATACTATCATGGA+CGG - tig0009285:6409-6428 Msa1346920:intron 25.0%
!! TCTTATTTGAGTTTATCTAC+AGG + tig0009285:6530-6549 None:intergenic 25.0%
!! ATTTGATTTCAAATACCAGA+GGG - tig0009285:6740-6759 Msa1346920:intron 25.0%
!!! GTTTTGGAATTTTAATTGCT+TGG - tig0009285:6823-6842 Msa1346920:intron 25.0%
!! GAAATCATTTCAACTTTTGA+TGG - tig0009285:6957-6976 Msa1346920:intron 25.0%
!!! AATTTTAGCCTTTGTTAAAG+TGG - tig0009285:7310-7329 Msa1346920:intron 25.0%
! AAACTTATCCACTTTAACAA+AGG + tig0009285:7321-7340 None:intergenic 25.0%
! GTGGATAAGTTTATTAATGT+TGG - tig0009285:7329-7348 Msa1346920:intron 25.0%
! GATAAGTTTATTAATGTTGG+TGG - tig0009285:7332-7351 Msa1346920:intron 25.0%
! AGAATGGCAATAATAGTATT+TGG - tig0009285:7375-7394 Msa1346920:intron 25.0%
! GAATGGCAATAATAGTATTT+GGG - tig0009285:7376-7395 Msa1346920:intron 25.0%
! AATGGCAATAATAGTATTTG+GGG - tig0009285:7377-7396 Msa1346920:intron 25.0%
! CAATATTAATAATGTGTCAG+TGG - tig0009285:7491-7510 Msa1346920:CDS 25.0%
!!! TATTATTTTAGGAGGATTAC+TGG - tig0009285:7567-7586 Msa1346920:CDS 25.0%
! AAAATGAAACTTCCAAACAT+AGG + tig0009285:7780-7799 None:intergenic 25.0%
! GTACAAAATTATTTCATCAC+AGG - tig0009285:7995-8014 Msa1346920:intron 25.0%
!!! AAAAGAATTTAAGAAGTACC+TGG + tig0009285:8212-8231 None:intergenic 25.0%
! ATTTGTAAACTAATCATCTG+TGG - tig0009285:8273-8292 Msa1346920:intron 25.0%
! TTTGTAAACTAATCATCTGT+GGG - tig0009285:8274-8293 Msa1346920:intron 25.0%
! AGTATAGTATTAATGAACTG+CGG + tig0009285:8789-8808 None:intergenic 25.0%
! AGTGTATTTAGATTAGATAC+TGG + tig0009285:9030-9049 None:intergenic 25.0%
! AAATTCGTGCTTATATTTCT+GGG - tig0009285:9241-9260 Msa1346920:intron 25.0%
! AAAACTTCACTTATCATTTG+TGG + tig0009285:9427-9446 None:intergenic 25.0%
! GAAATAAAGGGAAAAGAAAA+TGG + tig0009285:9501-9520 None:intergenic 25.0%
!!! AAAGAGATGATGGAAATAAA+GGG + tig0009285:9513-9532 None:intergenic 25.0%
!!! AAAAGAGATGATGGAAATAA+AGG + tig0009285:9514-9533 None:intergenic 25.0%
!! ACTGTTAATAATGCTTTGTT+TGG + tig0009285:9548-9567 None:intergenic 25.0%
! TATCAATAAGCTGAATTGAA+TGG - tig0009285:9717-9736 Msa1346920:intron 25.0%
! AATTCTAAACTTCAGAAAGT+GGG + tig0009285:9786-9805 None:intergenic 25.0%
!!! TTCTGAAGTTTAGAATTGAA+TGG - tig0009285:9789-9808 Msa1346920:intron 25.0%
!! TTTTATCAAATGCAATGGTA+TGG + tig0009285:10018-10037 None:intergenic 25.0%
! CATCATTCATCTATTTATTG+AGG - tig0009285:10293-10312 Msa1346920:intron 25.0%
! ACATTCAAGATTGAATTGAA+TGG + tig0009285:10427-10446 None:intergenic 25.0%
!! TTTTCTGTAAAATGAATTGC+AGG - tig0009285:10526-10545 Msa1346920:intron 25.0%
! TTTCTGTAAAATGAATTGCA+GGG - tig0009285:10527-10546 Msa1346920:intron 25.0%
! AAGTGTACCATGAAAAAAAT+GGG + tig0009285:10760-10779 None:intergenic 25.0%
! AAAGTGTACCATGAAAAAAA+TGG + tig0009285:10761-10780 None:intergenic 25.0%
! GTGCTAACTATATGTTATAA+TGG - tig0009285:10844-10863 Msa1346920:intron 25.0%
! CTTATAACTGAATACTTCAT+AGG + tig0009285:10872-10891 None:intergenic 25.0%
! ATCTGAAGATGAATCAAAAA+AGG - tig0009285:11058-11077 Msa1346920:intron 25.0%
! TTTGATATGCTAAAAAACAG+AGG + tig0009285:11437-11456 None:intergenic 25.0%
!!! GAGATTTAATGTGTTTTGTT+TGG + tig0009285:11616-11635 None:intergenic 25.0%
!!! CACATCAATTTTTTTGCTTT+AGG + tig0009285:11737-11756 None:intergenic 25.0%
! CTAAAGCAAAAAAATTGATG+TGG - tig0009285:11735-11754 Msa1346920:intron 25.0%
!! TTGACCATGAATTCAAATTT+TGG + tig0009285:11818-11837 None:intergenic 25.0%
!! AGGCCTCTAAAAAATTAATT+TGG + tig0009285:11918-11937 None:intergenic 25.0%
!! TTTCTTATTTCTCTCAATAC+GGG - tig0009285:12455-12474 Msa1346920:CDS 25.0%
!! TTATTATTGTGGGTACTTTT+TGG - tig0009285:12542-12561 Msa1346920:CDS 25.0%
!!! TATTATTGTGGGTACTTTTT+GGG - tig0009285:12543-12562 Msa1346920:CDS 25.0%
! ATCTAACATAAAAACATACG+AGG + tig0009285:12842-12861 None:intergenic 25.0%
!!! GGGATTTTTTTTATCAACAA+CGG - tig0009285:13061-13080 Msa1346920:intron 25.0%
! GCTTGATTTAATAACTTCAA+CGG + tig0009285:13140-13159 None:intergenic 25.0%
!!! AACAATATCGGTTTTACTTT+GGG + tig0009285:13274-13293 None:intergenic 25.0%
! AAAAAGGACGTCATTTAATT+CGG + tig0009285:13356-13375 None:intergenic 25.0%
!!! ACTGTTTTTACTTTTGTAAC+AGG - tig0009285:13396-13415 Msa1346920:intron 25.0%
!!! CTGTTTTTACTTTTGTAACA+GGG - tig0009285:13397-13416 Msa1346920:intron 25.0%
!!! TGTTTTTACTTTTGTAACAG+GGG - tig0009285:13398-13417 Msa1346920:intron 25.0%
! ATGTCTTCAAATTTCGTTTA+GGG + tig0009285:14016-14035 None:intergenic 25.0%
! TTCTTCAATTTACGAAAAAC+TGG + tig0009285:14054-14073 None:intergenic 25.0%
! CATGATATATTACAGTTGAT+TGG - tig0009285:14315-14334 Msa1346920:five_prime_UTR 25.0%
! GACGCTATCTTAAAATAATA+GGG + tig0009285:14551-14570 None:intergenic 25.0%
TGAGAGAATCAGAGTTTATT+AGG + tig0009285:5092-5111 None:intergenic 30.0%
!!! CCATTTTTGGTAGTTGAAAT+TGG + tig0009285:5158-5177 None:intergenic 30.0%
CCAATTTCAACTACCAAAAA+TGG - tig0009285:5155-5174 Msa1346920:three_prime_UTR 30.0%
AGAGAGGTTTGATAGAAATT+GGG + tig0009285:5287-5306 None:intergenic 30.0%
TAGAGAGGTTTGATAGAAAT+TGG + tig0009285:5288-5307 None:intergenic 30.0%
AACAACGAAGTTTATGATGA+TGG + tig0009285:5332-5351 None:intergenic 30.0%
AGTATGGTTATGGTTATGAT+CGG + tig0009285:5367-5386 None:intergenic 30.0%
!!! AAACTGATAATCGCTTTTTG+AGG + tig0009285:5489-5508 None:intergenic 30.0%
! AATTTGAAGTTGTTTGCGTT+TGG - tig0009285:6110-6129 Msa1346920:CDS 30.0%
!! TGTAGCTTTGAGTTTAAACA+TGG + tig0009285:6184-6203 None:intergenic 30.0%
TTGATTCTATCTTAGAAGCT+AGG + tig0009285:6210-6229 None:intergenic 30.0%
CACTTAATTAAGCCTATGTT+AGG + tig0009285:6325-6344 None:intergenic 30.0%
TTTCATATACTATCATGGAC+GGG - tig0009285:6410-6429 Msa1346920:intron 30.0%
!! GCACTTAACTTGTTAAACTA+GGG + tig0009285:6568-6587 None:intergenic 30.0%
!! AGCACTTAACTTGTTAAACT+AGG + tig0009285:6569-6588 None:intergenic 30.0%
! CATTTGATTTCAAATACCAG+AGG - tig0009285:6739-6758 Msa1346920:intron 30.0%
GCAGATTATTGAAGTGTAAT+CGG - tig0009285:7078-7097 Msa1346920:intron 30.0%
TTATTGAAGTGTAATCGGAA+TGG - tig0009285:7083-7102 Msa1346920:intron 30.0%
AGATGGTAGAATAATTGTGA+AGG - tig0009285:7243-7262 Msa1346920:intron 30.0%
! GAATAATTGTGAAGGTATGT+TGG - tig0009285:7251-7270 Msa1346920:intron 30.0%
!! TTATTAATGTTGGTGGTATG+AGG - tig0009285:7339-7358 Msa1346920:intron 30.0%
GTCAAACTAGTGATGTTAAT+GGG - tig0009285:7452-7471 Msa1346920:CDS 30.0%
TATTAATAATGTGTCAGTGG+CGG - tig0009285:7494-7513 Msa1346920:CDS 30.0%
AAACTTCCAAACATAGGTAT+TGG + tig0009285:7774-7793 None:intergenic 30.0%
! TGTTTACAGTGCAATTTTGT+TGG - tig0009285:7958-7977 Msa1346920:intron 30.0%
! GTTTACAGTGCAATTTTGTT+GGG - tig0009285:7959-7978 Msa1346920:intron 30.0%
TGAATAGACCTAAACTTCAA+AGG - tig0009285:8081-8100 Msa1346920:intron 30.0%
TTCCTTTGTGATTCAGTATT+AGG + tig0009285:8412-8431 None:intergenic 30.0%
AATAATAAGTGGAGTGATTC+AGG + tig0009285:8554-8573 None:intergenic 30.0%
ATGAATGGGGAAATAATAAG+TGG + tig0009285:8565-8584 None:intergenic 30.0%
TCTTCATCCTTGTATAGATT+TGG - tig0009285:8746-8765 Msa1346920:intron 30.0%
CTTCATCCTTGTATAGATTT+GGG - tig0009285:8747-8766 Msa1346920:intron 30.0%
!!! AACTTATACCTTTTTTGCAC+AGG + tig0009285:8998-9017 None:intergenic 30.0%
! ACCATTTCATTCTAGCTAAA+GGG + tig0009285:9116-9135 None:intergenic 30.0%
! TACCATTTCATTCTAGCTAA+AGG + tig0009285:9117-9136 None:intergenic 30.0%
GAAATTCGTGCTTATATTTC+TGG - tig0009285:9240-9259 Msa1346920:intron 30.0%
ATAGTTCTCTCTTCAAATGT+AGG - tig0009285:9301-9320 Msa1346920:intron 30.0%
TAGGAAGAGAAAAGATAGAA+AGG - tig0009285:9320-9339 Msa1346920:intron 30.0%
ACTTATCATTTGTGGTTGAA+TGG + tig0009285:9419-9438 None:intergenic 30.0%
!! GTTTTAACCAAGTGTAAACT+TGG - tig0009285:9566-9585 Msa1346920:CDS 30.0%
! TACTGATTAAAGAAACGTTC+CGG - tig0009285:9686-9705 Msa1346920:CDS 30.0%
GCTTATTGATAGATCTATTC+CGG + tig0009285:9708-9727 None:intergenic 30.0%
ATTCTAAACTTCAGAAAGTG+GGG + tig0009285:9785-9804 None:intergenic 30.0%
CAATTCTAAACTTCAGAAAG+TGG + tig0009285:9787-9806 None:intergenic 30.0%
AAACACAAACTTCAGAAAGT+GGG + tig0009285:9858-9877 None:intergenic 30.0%
!! TTTCTGAAGTTTGTGTTTGT+CGG - tig0009285:9860-9879 Msa1346920:intron 30.0%
ATGGGATGTTTGTTTATTTG+TGG - tig0009285:9920-9939 Msa1346920:intron 30.0%
TGGGATGTTTGTTTATTTGT+GGG - tig0009285:9921-9940 Msa1346920:intron 30.0%
ACCATTGCATTTGATAAAAC+AGG - tig0009285:10019-10038 Msa1346920:intron 30.0%
CCATTGCATTTGATAAAACA+GGG - tig0009285:10020-10039 Msa1346920:intron 30.0%
TCAAAATGATACCTTCCAAT+GGG + tig0009285:10202-10221 None:intergenic 30.0%
TTCAAAATGATACCTTCCAA+TGG + tig0009285:10203-10222 None:intergenic 30.0%
! CTTTTGTATGTTTCTCGATT+TGG - tig0009285:10339-10358 Msa1346920:intron 30.0%
!! TATGTTTCTCGATTTGGTAT+TGG - tig0009285:10345-10364 Msa1346920:intron 30.0%
! AATTTTCAACAGAGACAGAA+GGG + tig0009285:10584-10603 None:intergenic 30.0%
! AAATTTTCAACAGAGACAGA+AGG + tig0009285:10585-10604 None:intergenic 30.0%
!! GAAAATTTTGAGTACTTTCC+TGG - tig0009285:10597-10616 Msa1346920:intron 30.0%
GTAGTGTAAACTATAATGCT+TGG + tig0009285:10685-10704 None:intergenic 30.0%
! ACTAACATTAGTTTCAGACT+CGG + tig0009285:10826-10845 None:intergenic 30.0%
ACAAGTAGAATGACTCAAAT+TGG - tig0009285:10947-10966 Msa1346920:intron 30.0%
AGATGAATCAAAAAAGGTCA+AGG - tig0009285:11064-11083 Msa1346920:intron 30.0%
GCTATTAATGCATCTTCTTA+TGG - tig0009285:11089-11108 Msa1346920:intron 30.0%
GTCATATACTTAGTCTCTTA+CGG - tig0009285:11162-11181 Msa1346920:intron 30.0%
!! AATTTTGATGGTTTGTACTC+TGG - tig0009285:11302-11321 Msa1346920:intron 30.0%
!! TCAAAAGCACCTATATTTGT+TGG - tig0009285:11452-11471 Msa1346920:intron 30.0%
!! CAAAAGCACCTATATTTGTT+GGG - tig0009285:11453-11472 Msa1346920:intron 30.0%
!! AAAAGCACCTATATTTGTTG+GGG - tig0009285:11454-11473 Msa1346920:intron 30.0%
CTGTAGAAGTTGAAAAACTT+TGG + tig0009285:11546-11565 None:intergenic 30.0%
! TTGTTATTGTTGTTGTGAAC+TGG - tig0009285:11689-11708 Msa1346920:intron 30.0%
! TGTTATTGTTGTTGTGAACT+GGG - tig0009285:11690-11709 Msa1346920:intron 30.0%
GAGACCAAAATTTGAATTCA+TGG - tig0009285:11811-11830 Msa1346920:intron 30.0%
! AACAGTAATTGAGACCTTTT+TGG - tig0009285:11836-11855 Msa1346920:intron 30.0%
AGCTTAACTGATTACCAAAA+AGG + tig0009285:11853-11872 None:intergenic 30.0%
AAAGGATATCTCAAGAGATA+TGG - tig0009285:12280-12299 Msa1346920:intron 30.0%
AAGGATATCTCAAGAGATAT+GGG - tig0009285:12281-12300 Msa1346920:intron 30.0%
! ATCTTTTGTCTCTGATAACA+TGG - tig0009285:12332-12351 Msa1346920:intron 30.0%
GGAAAAATTAGGATTGTAAG+AGG + tig0009285:12753-12772 None:intergenic 30.0%
GATTTAATAACTTCAACGGA+CGG + tig0009285:13136-13155 None:intergenic 30.0%
AAAACACGAAAAAGTCCAAA+AGG + tig0009285:13181-13200 None:intergenic 30.0%
!!! CAACAATATCGGTTTTACTT+TGG + tig0009285:13275-13294 None:intergenic 30.0%
CTAAGGTAGAACAACAATAT+CGG + tig0009285:13286-13305 None:intergenic 30.0%
AAAAGGACGTCATTTAATTC+GGG + tig0009285:13355-13374 None:intergenic 30.0%
TTGAGCACAAAACTGTAAAA+AGG + tig0009285:13372-13391 None:intergenic 30.0%
!! GTTTTTACTTTTGTAACAGG+GGG - tig0009285:13399-13418 Msa1346920:intron 30.0%
AGAAAAAAAAAATGTGGCTC+TGG - tig0009285:13631-13650 Msa1346920:intron 30.0%
! TACGTAATCTTTTCAGCAAT+TGG - tig0009285:13670-13689 Msa1346920:intron 30.0%
ATTTCTTCCATTGTGGATAA+CGG - tig0009285:13791-13810 Msa1346920:intron 30.0%
ATTCTGTTAACAAGGACAAA+TGG + tig0009285:13887-13906 None:intergenic 30.0%
TCACATTCATTCTGTTAACA+AGG + tig0009285:13895-13914 None:intergenic 30.0%
! TGTTCAAGTTATTCACTACA+TGG + tig0009285:13958-13977 None:intergenic 30.0%
TGTAAACACAGAAAAGAAGA+GGG + tig0009285:13989-14008 None:intergenic 30.0%
ATGTAAACACAGAAAAGAAG+AGG + tig0009285:13990-14009 None:intergenic 30.0%
GATGTCTTCAAATTTCGTTT+AGG + tig0009285:14017-14036 None:intergenic 30.0%
TATATTACAGTTGATTGGCA+AGG - tig0009285:14320-14339 Msa1346920:five_prime_UTR 30.0%
TGTTATATTTGTCCTAAGAG+AGG + tig0009285:14361-14380 None:intergenic 30.0%
TCTCTTAGGACAAATATAAC+AGG - tig0009285:14360-14379 Msa1346920:five_prime_UTR 30.0%
AGTAGAGAAATAGTGTATTG+CGG - tig0009285:14434-14453 Msa1346920:five_prime_UTR 30.0%
AATACCCCTTGTAAATGTAT+AGG - tig0009285:14495-14514 Msa1346920:five_prime_UTR 30.0%
AGATGCCTATACATTTACAA+GGG + tig0009285:14503-14522 None:intergenic 30.0%
AAGATGCCTATACATTTACA+AGG + tig0009285:14504-14523 None:intergenic 30.0%
GGACGCTATCTTAAAATAAT+AGG + tig0009285:14552-14571 None:intergenic 30.0%
ATTCCATTTGAAAGGCAAAA+CGG + tig0009285:14584-14603 None:intergenic 30.0%
! GGATTTGATTCTTGTGGTTT+TGG + tig0009285:5235-5254 None:intergenic 35.0%
GTTAGAGGATTTGATTCTTG+TGG + tig0009285:5241-5260 None:intergenic 35.0%
GAGAGGTTTGATAGAAATTG+GGG + tig0009285:5286-5305 None:intergenic 35.0%
AGGAATTTGGAAGAATAGAG+AGG + tig0009285:5303-5322 None:intergenic 35.0%
! ATGATGGAGAATGAGGAATT+TGG + tig0009285:5316-5335 None:intergenic 35.0%
!! GTTTATGATGATGGAGAATG+AGG + tig0009285:5323-5342 None:intergenic 35.0%
! GATGATGATGATGATGATGA+TGG + tig0009285:5425-5444 None:intergenic 35.0%
ACAGGTTTGATGAGTGATTT+GGG + tig0009285:5624-5643 None:intergenic 35.0%
ACTTGATGTGTATCAGGTTT+CGG - tig0009285:5820-5839 Msa1346920:intron 35.0%
GATGCTCTAATTGAAATGAG+TGG - tig0009285:5851-5870 Msa1346920:intron 35.0%
!! TATTTTTATGGGGAACGCTT+TGG - tig0009285:5922-5941 Msa1346920:CDS 35.0%
TAAGATAGAATCAATTCCGG+AGG - tig0009285:6216-6235 Msa1346920:CDS 35.0%
! GTAGTCAAAATTGATTCTGG+AGG + tig0009285:6289-6308 None:intergenic 35.0%
! GGAGTAGTCAAAATTGATTC+TGG + tig0009285:6292-6311 None:intergenic 35.0%
!!! AATTTTGACTACTCCAAACG+TGG - tig0009285:6297-6316 Msa1346920:intron 35.0%
GTTAAACTAGGGCATATGTT+TGG + tig0009285:6557-6576 None:intergenic 35.0%
GTATTTCACAAGTCGTTCAA+TGG - tig0009285:6638-6657 Msa1346920:intron 35.0%
! GGTTGATGTTAAAGAGTTGA+AGG - tig0009285:6659-6678 Msa1346920:intron 35.0%
TCAAGAACAAGTGCAAATTC+TGG + tig0009285:6693-6712 None:intergenic 35.0%
ATATGATTGCTTCCTTGTGT+TGG - tig0009285:6882-6901 Msa1346920:intron 35.0%
TATGATTGCTTCCTTGTGTT+GGG - tig0009285:6883-6902 Msa1346920:intron 35.0%
!!! TGGGTTTTGAGGTTTTCAAA+TGG - tig0009285:6902-6921 Msa1346920:intron 35.0%
!! TTTGAGGTTTTCAAATGGCT+AGG - tig0009285:6907-6926 Msa1346920:intron 35.0%
!! CATTTCAACTTTTGATGGCT+TGG - tig0009285:6962-6981 Msa1346920:intron 35.0%
TGGAAAACTTCACAATCTAC+AGG + tig0009285:7127-7146 None:intergenic 35.0%
! GTAGATTGTGAAGTTTTCCA+CGG - tig0009285:7127-7146 Msa1346920:intron 35.0%
!! TTGTGATGGATGAAACAGTT+AGG - tig0009285:7421-7440 Msa1346920:CDS 35.0%
ATGAAACAGTTAGGAGAAGA+AGG - tig0009285:7430-7449 Msa1346920:CDS 35.0%
GGTCAAACTAGTGATGTTAA+TGG - tig0009285:7451-7470 Msa1346920:CDS 35.0%
AAACTAGTGATGTTAATGGG+TGG - tig0009285:7455-7474 Msa1346920:CDS 35.0%
! AACTAGTGATGTTAATGGGT+GGG - tig0009285:7456-7475 Msa1346920:CDS 35.0%
!! TGTGTAAATCGTTAGTTCTG+AGG - tig0009285:7598-7617 Msa1346920:intron 35.0%
!! GAATTGCTGTATGTTTTTGC+TGG - tig0009285:7687-7706 Msa1346920:intron 35.0%
AACTTATCCTTAGACATGCT+TGG + tig0009285:7842-7861 None:intergenic 35.0%
TTGCTAGAGATTGTAATGCT+AGG - tig0009285:7860-7879 Msa1346920:intron 35.0%
! CATTGCTGACAGTCTAAAAT+TGG + tig0009285:7889-7908 None:intergenic 35.0%
ATAGACCTAAACTTCAAAGG+TGG - tig0009285:8084-8103 Msa1346920:intron 35.0%
! TCAATTGCTATTGCTGTTCT+TGG - tig0009285:8152-8171 Msa1346920:intron 35.0%
TTGGTCCACTTGTATTTAAG+TGG - tig0009285:8171-8190 Msa1346920:intron 35.0%
AATGGCCACTTAAATACAAG+TGG + tig0009285:8179-8198 None:intergenic 35.0%
TGTGATTCAGTATTAGGAGA+GGG + tig0009285:8406-8425 None:intergenic 35.0%
TTGTGATTCAGTATTAGGAG+AGG + tig0009285:8407-8426 None:intergenic 35.0%
CTCCTAATACTGAATCACAA+AGG - tig0009285:8407-8426 Msa1346920:intron 35.0%
! TAGAGAAATGGTGAGGTTTT+GGG + tig0009285:8503-8522 None:intergenic 35.0%
! ATAGAGAAATGGTGAGGTTT+TGG + tig0009285:8504-8523 None:intergenic 35.0%
GAAAGAATAGAGAAATGGTG+AGG + tig0009285:8510-8529 None:intergenic 35.0%
CAGTGAGCACTATATAAAGT+TGG + tig0009285:8825-8844 None:intergenic 35.0%
GGGCTAACAAAAATTCAAAG+CGG + tig0009285:9096-9115 None:intergenic 35.0%
TACTTCACAACTTAAACACC+AGG + tig0009285:9141-9160 None:intergenic 35.0%
AAGAACACAAACTGTACAGA+TGG + tig0009285:9170-9189 None:intergenic 35.0%
TGGGTTTATCAGTTTAGTTG+AGG - tig0009285:9260-9279 Msa1346920:intron 35.0%
ATCAGTTTAGTTGAGGAAAG+CGG - tig0009285:9267-9286 Msa1346920:intron 35.0%
AAGAATACATGTTTGCATGC+AGG + tig0009285:9468-9487 None:intergenic 35.0%
GCAGAAAGAAAAAGAGATGA+TGG + tig0009285:9523-9542 None:intergenic 35.0%
TCAGTTTCCAAGTTTACACT+TGG + tig0009285:9576-9595 None:intergenic 35.0%
AACACAAACTTCAGAAAGTG+GGG + tig0009285:9857-9876 None:intergenic 35.0%
CAAACACAAACTTCAGAAAG+TGG + tig0009285:9859-9878 None:intergenic 35.0%
! CCCTGTTTTATCAAATGCAA+TGG + tig0009285:10023-10042 None:intergenic 35.0%
CAAAATGATACCTTCCAATG+GGG + tig0009285:10201-10220 None:intergenic 35.0%
! AATTGTTACTTGTACGAGGT+TGG + tig0009285:10252-10271 None:intergenic 35.0%
! GATTTGGTATTGGACTATTG+TGG - tig0009285:10355-10374 Msa1346920:intron 35.0%
CTCAAAATACTGACAATGCA+TGG + tig0009285:10707-10726 None:intergenic 35.0%
CCAAGAGAAATGTATGCAAT+AGG + tig0009285:10732-10751 None:intergenic 35.0%
CCTATTGCATACATTTCTCT+TGG - tig0009285:10729-10748 Msa1346920:CDS 35.0%
!!! GGAGAATCCCATTTTTTTCA+TGG - tig0009285:10750-10769 Msa1346920:CDS 35.0%
!! ATTTTGTTATAGTCAGGAGC+TGG - tig0009285:10975-10994 Msa1346920:intron 35.0%
!! AACCTATTGAAAGCATCACT+TGG - tig0009285:11005-11024 Msa1346920:intron 35.0%
!! ACCTATTGAAAGCATCACTT+GGG - tig0009285:11006-11025 Msa1346920:intron 35.0%
TAAACAGAACAGTACAAGAC+AGG - tig0009285:11214-11233 Msa1346920:intron 35.0%
AAACAGAACAGTACAAGACA+GGG - tig0009285:11215-11234 Msa1346920:intron 35.0%
!! GCGTACTTTGGTAATTTTGA+TGG - tig0009285:11290-11309 Msa1346920:intron 35.0%
TATGCTAAAAAACAGAGGAC+TGG + tig0009285:11432-11451 None:intergenic 35.0%
!! ATATCTCCAGCTTTAGAAGT+TGG - tig0009285:11513-11532 Msa1346920:CDS 35.0%
!!! ATGTGTTTTGTTTGGGAAGA+GGG + tig0009285:11608-11627 None:intergenic 35.0%
!!! AATGTGTTTTGTTTGGGAAG+AGG + tig0009285:11609-11628 None:intergenic 35.0%
TTTAGGCCTCTTAATCTGTT+AGG + tig0009285:11720-11739 None:intergenic 35.0%
!! GCTTTAGGTCGCAAAATTTT+AGG + tig0009285:11950-11969 None:intergenic 35.0%
! CTTGTCAACATTTTCCTTCT+GGG - tig0009285:12037-12056 Msa1346920:intron 35.0%
TGAATAACATCAAAAACCCC+TGG + tig0009285:12122-12141 None:intergenic 35.0%
AGATAAGTTGCGTCATGTAA+AGG - tig0009285:12262-12281 Msa1346920:intron 35.0%
TCCATAATTCATGTCATACC+CGG - tig0009285:12481-12500 Msa1346920:CDS 35.0%
AGGTACTTAACCATAAGTAC+CGG + tig0009285:12503-12522 None:intergenic 35.0%
AACAACGGTGACACTTATAA+TGG - tig0009285:13076-13095 Msa1346920:intron 35.0%
TAAGACAACAGAGTCAACTA+AGG + tig0009285:13303-13322 None:intergenic 35.0%
CATTCTGTATTGCCAAATCT+CGG - tig0009285:13568-13587 Msa1346920:intron 35.0%
GATTAAGCAAAATGTAGCTC+TGG - tig0009285:13725-13744 Msa1346920:intron 35.0%
!!! TTTTGGGATTTCTTCCATTG+TGG - tig0009285:13784-13803 Msa1346920:intron 35.0%
CGATCTTGTTACTATTTGTC+AGG - tig0009285:13840-13859 Msa1346920:intron 35.0%
GTAAACACAGAAAAGAAGAG+GGG + tig0009285:13988-14007 None:intergenic 35.0%
TTCTCTCGAACCTTATTCTA+TGG - tig0009285:14164-14183 Msa1346920:five_prime_UTR 35.0%
TCAATATGTAACATGCATGC+AGG - tig0009285:14212-14231 Msa1346920:five_prime_UTR 35.0%
TGGTTCATTTAAACCACGTA+TGG + tig0009285:14280-14299 None:intergenic 35.0%
CTGTAATATATCATGCTTCC+AGG + tig0009285:14310-14329 None:intergenic 35.0%
GATGCCTATACATTTACAAG+GGG + tig0009285:14502-14521 None:intergenic 35.0%
!! TCTTTTTCGTCCCAAAGTAT+TGG - tig0009285:14520-14539 Msa1346920:five_prime_UTR 35.0%
TAGGGAATGTCCAATACTTT+GGG + tig0009285:14533-14552 None:intergenic 35.0%
ATAGGGAATGTCCAATACTT+TGG + tig0009285:14534-14553 None:intergenic 35.0%
TTCCATTTGAAAGGCAAAAC+GGG + tig0009285:14583-14602 None:intergenic 35.0%
GTGAGTGGAATTTGGTAGAA+GGG + tig0009285:5200-5219 None:intergenic 40.0%
AGTGAGTGGAATTTGGTAGA+AGG + tig0009285:5201-5220 None:intergenic 40.0%
GATGTGAAGTGAGTGGAATT+TGG + tig0009285:5208-5227 None:intergenic 40.0%
!!! TGATTCTTGTGGTTTTGGTG+TGG + tig0009285:5230-5249 None:intergenic 40.0%
AATAGGAAAAGCGAGGTTAG+AGG + tig0009285:5256-5275 None:intergenic 40.0%
GTTATGATCGGTGTGATTTG+CGG + tig0009285:5355-5374 None:intergenic 40.0%
! GTCAATCCATTTGGTAGCTT+TGG + tig0009285:5514-5533 None:intergenic 40.0%
ATTCGCTAGGTCAATCCATT+TGG + tig0009285:5523-5542 None:intergenic 40.0%
! TGATTTGGGCAAAGTATGAG+GGG + tig0009285:5610-5629 None:intergenic 40.0%
! GTGATTTGGGCAAAGTATGA+GGG + tig0009285:5611-5630 None:intergenic 40.0%
! AGTGATTTGGGCAAAGTATG+AGG + tig0009285:5612-5631 None:intergenic 40.0%
GACAGGTTTGATGAGTGATT+TGG + tig0009285:5625-5644 None:intergenic 40.0%
!!! AGAATGAACGAGTTTTGGAC+AGG + tig0009285:5642-5661 None:intergenic 40.0%
TGTCCAAAACTCGTTCATTC+TGG - tig0009285:5641-5660 Msa1346920:intron 40.0%
TAGTTTCTTACCCCAACCAA+CGG + tig0009285:5675-5694 None:intergenic 40.0%
ATGCTCACTTGATGTGTATC+AGG - tig0009285:5814-5833 Msa1346920:intron 40.0%
GCTCTAATTGAAATGAGTGG+TGG - tig0009285:5854-5873 Msa1346920:intron 40.0%
AGTGAGCATCCATGTGTTAA+TGG - tig0009285:5880-5899 Msa1346920:intron 40.0%
CATCCATGTGTTAATGGCAA+TGG - tig0009285:5886-5905 Msa1346920:intron 40.0%
!!! AGTGGCATTGATTTTTCCTC+CGG + tig0009285:6235-6254 None:intergenic 40.0%
TTGACATGTTTGTTCTCGAG+TGG + tig0009285:6253-6272 None:intergenic 40.0%
GCTTGGGAGAGTTTATTTAC+AGG + tig0009285:6490-6509 None:intergenic 40.0%
ATGATCCCACAGTTATATCG+TGG + tig0009285:6773-6792 None:intergenic 40.0%
!! TCCAAAACTTGTTACCTCTC+CGG + tig0009285:6811-6830 None:intergenic 40.0%
AAACCTCAAAACCCAACACA+AGG + tig0009285:6897-6916 None:intergenic 40.0%
CAAGTGCTCAATGGTAATTG+TGG + tig0009285:7158-7177 None:intergenic 40.0%
ATTACCATTGAGCACTTGAC+AGG - tig0009285:7160-7179 Msa1346920:intron 40.0%
TTACCATTGAGCACTTGACA+GGG - tig0009285:7161-7180 Msa1346920:intron 40.0%
AGGAACTCTATCTCCAACTT+TGG + tig0009285:7206-7225 None:intergenic 40.0%
AAAGTTGGAGATAGAGTTCC+TGG - tig0009285:7205-7224 Msa1346920:intron 40.0%
TAGTACAGCAAGAGCTGAAA+TGG + tig0009285:7277-7296 None:intergenic 40.0%
AGGAAGTGGAACAGAAAGAA+TGG - tig0009285:7359-7378 Msa1346920:intron 40.0%
! TATTTGGGGTTTGTGTACCA+TGG - tig0009285:7391-7410 Msa1346920:intron 40.0%
ACCATGGTGACTAATTGTGA+TGG - tig0009285:7407-7426 Msa1346920:CDS 40.0%
TCCATCACAATTAGTCACCA+TGG + tig0009285:7411-7430 None:intergenic 40.0%
CAAGCTTCAGAAGAGTAACA+AGG + tig0009285:7535-7554 None:intergenic 40.0%
!! CTTGTTACTCTTCTGAAGCT+TGG - tig0009285:7533-7552 Msa1346920:CDS 40.0%
GTGATTGAGATGAATGGAGT+TGG - tig0009285:7630-7649 Msa1346920:intron 40.0%
CACTGACCAATACCTATGTT+TGG - tig0009285:7765-7784 Msa1346920:intron 40.0%
TCAAGTTCCAAGCATGTCTA+AGG - tig0009285:7832-7851 Msa1346920:intron 40.0%
CATCACAGGTAACAAAGACA+TGG - tig0009285:8009-8028 Msa1346920:intron 40.0%
ACAGGTAACAAAGACATGGA+AGG - tig0009285:8013-8032 Msa1346920:intron 40.0%
GTACCTGGTGTACTAAAGAA+TGG + tig0009285:8197-8216 None:intergenic 40.0%
GGTGGGAAAGAATAGAGAAA+TGG + tig0009285:8515-8534 None:intergenic 40.0%
!! GCACACAAGATAGTATTGGT+GGG + tig0009285:8532-8551 None:intergenic 40.0%
TCAGGCACACAAGATAGTAT+TGG + tig0009285:8536-8555 None:intergenic 40.0%
AAGGACTGTGTATGTATGCA+AGG + tig0009285:8690-8709 None:intergenic 40.0%
AACAAGAGCTATGCTCAAGT+AGG + tig0009285:8726-8745 None:intergenic 40.0%
TCCTTGTATAGATTTGGGCA+AGG - tig0009285:8752-8771 Msa1346920:intron 40.0%
CCTTGTATAGATTTGGGCAA+GGG - tig0009285:8753-8772 Msa1346920:intron 40.0%
TAATGAACTGCGGAAGTCAA+GGG + tig0009285:8779-8798 None:intergenic 40.0%
TTAATGAACTGCGGAAGTCA+AGG + tig0009285:8780-8799 None:intergenic 40.0%
GTTCTATCTACAGAGCCTTA+GGG - tig0009285:8905-8924 Msa1346920:intron 40.0%
AATCAGCTCCTGTGCAAAAA+AGG - tig0009285:8987-9006 Msa1346920:intron 40.0%
GCCCTTTAGCTAGAATGAAA+TGG - tig0009285:9112-9131 Msa1346920:CDS 40.0%
GCTAGAATGAAATGGTATCC+TGG - tig0009285:9120-9139 Msa1346920:CDS 40.0%
TCAGTTTAGTTGAGGAAAGC+GGG - tig0009285:9268-9287 Msa1346920:intron 40.0%
ATGCAGGTAAGAGGAAAGAA+AGG + tig0009285:9452-9471 None:intergenic 40.0%
TTGCAGGGCATATTACTCAA+AGG - tig0009285:9962-9981 Msa1346920:intron 40.0%
! AAAACAGGGACATTGACTAC+TGG - tig0009285:10034-10053 Msa1346920:intron 40.0%
!! TACTGGTGGACTTGTATTCA+AGG - tig0009285:10051-10070 Msa1346920:intron 40.0%
AAGGCAATTGAGCCTGTTTA+CGG - tig0009285:10070-10089 Msa1346920:intron 40.0%
! CCACAATTGTTACTTGTACG+AGG + tig0009285:10256-10275 None:intergenic 40.0%
CCTCGTACAAGTAACAATTG+TGG - tig0009285:10253-10272 Msa1346920:intron 40.0%
GTAACAATTGTGGCTGTCAT+TGG - tig0009285:10263-10282 Msa1346920:intron 40.0%
ATATAGCACGAACTGCAACA+TGG - tig0009285:10473-10492 Msa1346920:intron 40.0%
TAAAATGAATTGCAGGGCTG+TGG - tig0009285:10533-10552 Msa1346920:intron 40.0%
CTGTGGTTGAACATAGTGAA+GGG - tig0009285:10550-10569 Msa1346920:intron 40.0%
TTTGAGTACTTTCCTGGTAG+AGG - tig0009285:10603-10622 Msa1346920:intron 40.0%
TGCTGTTAACAGTAGCAGTA+AGG + tig0009285:10629-10648 None:intergenic 40.0%
TGCTACTGTTAACAGCATTG+AGG - tig0009285:10632-10651 Msa1346920:intron 40.0%
ACCCAAGTGATGCTTTCAAT+AGG + tig0009285:11010-11029 None:intergenic 40.0%
! GGAACATGAAAAGCGTACTT+TGG - tig0009285:11278-11297 Msa1346920:intron 40.0%
CTTGTCTCACTGTTTAGTGA+AGG - tig0009285:11332-11351 Msa1346920:intron 40.0%
ATTCCTGCCCCAACAAATAT+AGG + tig0009285:11464-11483 None:intergenic 40.0%
!! ATGAAGCCAACTTCTAAAGC+TGG + tig0009285:11522-11541 None:intergenic 40.0%
!!! TGTGTTTTGTTTGGGAAGAG+GGG + tig0009285:11607-11626 None:intergenic 40.0%
AGAGATGATGTTCACAACCA+GGG + tig0009285:12004-12023 None:intergenic 40.0%
CCAGAAGGAAAATGTTGACA+AGG + tig0009285:12039-12058 None:intergenic 40.0%
! CCTTGTCAACATTTTCCTTC+TGG - tig0009285:12036-12055 Msa1346920:intron 40.0%
! CATCAAGTGGTTAGTCAGTA+AGG + tig0009285:12063-12082 None:intergenic 40.0%
! TTCCGTGTGATGATGTTAAC+TGG - tig0009285:12164-12183 Msa1346920:intron 40.0%
CACCAGTTAACATCATCACA+CGG + tig0009285:12169-12188 None:intergenic 40.0%
ACATGACGCAACTTATCTTC+AGG + tig0009285:12260-12279 None:intergenic 40.0%
ACCGGGTATGACATGAATTA+TGG + tig0009285:12485-12504 None:intergenic 40.0%
GGTACTTAACCATAAGTACC+GGG + tig0009285:12502-12521 None:intergenic 40.0%
!!! GGGTACTTTTTGGGTAAGTA+CGG - tig0009285:12552-12571 Msa1346920:CDS 40.0%
!!! GGTACTTTTTGGGTAAGTAC+GGG - tig0009285:12553-12572 Msa1346920:CDS 40.0%
! CTTTTGTAGCGACACACTAT+TGG - tig0009285:13201-13220 Msa1346920:intron 40.0%
TGCATGAACCTACACTGAAA+CGG + tig0009285:13228-13247 None:intergenic 40.0%
TTTCAGTGTAGGTTCATGCA+GGG - tig0009285:13228-13247 Msa1346920:intron 40.0%
!! TTTACTTTTGTAACAGGGGG+AGG - tig0009285:13402-13421 Msa1346920:intron 40.0%
!! GGCTTAATTATGGTTGGTGA+AGG - tig0009285:13423-13442 Msa1346920:intron 40.0%
CGAGATTTGGCAATACAGAA+TGG + tig0009285:13570-13589 None:intergenic 40.0%
GGCATTGTCTAGCATATTCT+TGG - tig0009285:13746-13765 Msa1346920:intron 40.0%
AAATCCCAAAACTGACGGAA+GGG + tig0009285:13775-13794 None:intergenic 40.0%
GGAAGAAATCCCAAAACTGA+CGG + tig0009285:13780-13799 None:intergenic 40.0%
TGTCATACCGTTATCCACAA+TGG + tig0009285:13801-13820 None:intergenic 40.0%
TTACTATTTGTCAGGCTGTC+AGG - tig0009285:13848-13867 Msa1346920:intron 40.0%
GAGCTTGAGGATATTTACTG+AGG + tig0009285:14133-14152 None:intergenic 40.0%
CAGTAAATATCCTCAAGCTC+TGG - tig0009285:14133-14152 Msa1346920:exon 40.0%
ATGCAGGTTCTCTTACATGA+AGG - tig0009285:14228-14247 Msa1346920:five_prime_UTR 40.0%
GTGGTTTAAATGAACCATCC+TGG - tig0009285:14283-14302 Msa1346920:five_prime_UTR 40.0%
AATCTAGACTCTCCTCTCTT+AGG - tig0009285:14346-14365 Msa1346920:five_prime_UTR 40.0%
CTACACACATCACAAATTCG+CGG + tig0009285:14403-14422 None:intergenic 40.0%
TCCATTTGAAAGGCAAAACG+GGG + tig0009285:14582-14601 None:intergenic 40.0%
! CTTCTCGTGCTGTTATAACA+GGG + tig0009285:14649-14668 None:intergenic 40.0%
! ACTTCTCGTGCTGTTATAAC+AGG + tig0009285:14650-14669 None:intergenic 40.0%
TGTTATAACAGCACGAGAAG+TGG - tig0009285:14649-14668 Msa1346920:five_prime_UTR 40.0%
CTTGTTACGGGTCATTACAG+TGG + tig0009285:5028-5047 None:intergenic 45.0%
ATGTGCGAATAGGAAAAGCG+AGG + tig0009285:5263-5282 None:intergenic 45.0%
GAAATTGGGGATGTGCGAAT+AGG + tig0009285:5273-5292 None:intergenic 45.0%
ATCGATGATGCGAATCTCAC+TGG - tig0009285:5462-5481 Msa1346920:intron 45.0%
GTTTCGCCAAAGCTACCAAA+TGG - tig0009285:5505-5524 Msa1346920:intron 45.0%
GCTCTCTCAAGAAATTCGCT+AGG + tig0009285:5536-5555 None:intergenic 45.0%
! CGACCAGAATGAACGAGTTT+TGG + tig0009285:5647-5666 None:intergenic 45.0%
CTGCCATTGCCATTAACACA+TGG + tig0009285:5892-5911 None:intergenic 45.0%
! TTTATGGGGAACGCTTTGGA+AGG - tig0009285:5926-5945 Msa1346920:CDS 45.0%
CCTATGTTAGGTTCCACGTT+TGG + tig0009285:6313-6332 None:intergenic 45.0%
CCAAACGTGGAACCTAACAT+AGG - tig0009285:6310-6329 Msa1346920:intron 45.0%
ATCATGGACGGGAGAGTTAA+TGG - tig0009285:6421-6440 Msa1346920:intron 45.0%
TAAACTCTCCCAAGCAGTCT+CGG - tig0009285:6495-6514 Msa1346920:intron 45.0%
ATAAGTACCCGAGACTGCTT+GGG + tig0009285:6506-6525 None:intergenic 45.0%
TATAAGTACCCGAGACTGCT+TGG + tig0009285:6507-6526 None:intergenic 45.0%
TCCTGTCCACGATATAACTG+TGG - tig0009285:6764-6783 Msa1346920:intron 45.0%
CCTGTCCACGATATAACTGT+GGG - tig0009285:6765-6784 Msa1346920:intron 45.0%
GTGGGATCATATGTCCTTGT+TGG - tig0009285:6783-6802 Msa1346920:intron 45.0%
TCATATGTCCTTGTTGGTGC+CGG - tig0009285:6789-6808 Msa1346920:intron 45.0%
! CTTCCTTGTGTTGGGTTTTG+AGG - tig0009285:6891-6910 Msa1346920:intron 45.0%
TTGCAATCCACAAATGCCAC+GGG + tig0009285:6998-7017 None:intergenic 45.0%
GTTGCAATCCACAAATGCCA+CGG + tig0009285:6999-7018 None:intergenic 45.0%
! GATTGTGAAGTTTTCCACGG+CGG - tig0009285:7130-7149 Msa1346920:intron 45.0%
TACCATTGAGCACTTGACAG+GGG - tig0009285:7162-7181 Msa1346920:intron 45.0%
!! ATGTTGGTGGTATGAGGAAG+TGG - tig0009285:7345-7364 Msa1346920:intron 45.0%
!! ATCGTTAGTTCTGAGGTTGC+TGG - tig0009285:7605-7624 Msa1346920:intron 45.0%
! CTGGTGGTGATTGAGATGAA+TGG - tig0009285:7624-7643 Msa1346920:intron 45.0%
GAGATGAATGGAGTTGGAGT+TGG - tig0009285:7636-7655 Msa1346920:intron 45.0%
!! AATGGAGTTGGAGTTGGTGT+TGG - tig0009285:7642-7661 Msa1346920:intron 45.0%
GGTCAGTGTCATGTGAAACT+TGG + tig0009285:7753-7772 None:intergenic 45.0%
ACCTAAACTTCAAAGGTGGC+TGG - tig0009285:8088-8107 Msa1346920:intron 45.0%
!! TCCAGCCACCTTTGAAGTTT+AGG + tig0009285:8092-8111 None:intergenic 45.0%
CAAAGGTGGCTGGATGAATT+TGG - tig0009285:8098-8117 Msa1346920:intron 45.0%
GCGTTACAGCAAAGTTGTTG+TGG - tig0009285:8124-8143 Msa1346920:intron 45.0%
TGGCCATTCTTTAGTACACC+AGG - tig0009285:8191-8210 Msa1346920:intron 45.0%
GAGGGAAATCTCTGCTTGTA+AGG + tig0009285:8388-8407 None:intergenic 45.0%
! GGCACACAAGATAGTATTGG+TGG + tig0009285:8533-8552 None:intergenic 45.0%
ACAGCTGGTGCAGTATGAAT+GGG + tig0009285:8579-8598 None:intergenic 45.0%
AACAGCTGGTGCAGTATGAA+TGG + tig0009285:8580-8599 None:intergenic 45.0%
TTGTTAACAGCCTGAACAGC+TGG + tig0009285:8594-8613 None:intergenic 45.0%
ACCCTGCAATTCCTCTCTTA+TGG - tig0009285:8662-8681 Msa1346920:CDS 45.0%
GCCATAAGAGAGGAATTGCA+GGG + tig0009285:8666-8685 None:intergenic 45.0%
AGCCATAAGAGAGGAATTGC+AGG + tig0009285:8667-8686 None:intergenic 45.0%
TATGCAAGGAGCCATAAGAG+AGG + tig0009285:8676-8695 None:intergenic 45.0%
CCCTTGCCCAAATCTATACA+AGG + tig0009285:8756-8775 None:intergenic 45.0%
TTTGTTGATGCAGCTTGCAG+AGG - tig0009285:8883-8902 Msa1346920:intron 45.0%
GGTTCTATCTACAGAGCCTT+AGG - tig0009285:8904-8923 Msa1346920:intron 45.0%
ATTGCTGTGGCATATGCCAA+TGG + tig0009285:8970-8989 None:intergenic 45.0%
GCACGAATTTCAGAAGATGC+TGG + tig0009285:9231-9250 None:intergenic 45.0%
CATGTTTGCATGCAGGTAAG+AGG + tig0009285:9461-9480 None:intergenic 45.0%
TGACAGTTACCTCAACTTGC+AGG - tig0009285:9946-9965 Msa1346920:intron 45.0%
GACAGTTACCTCAACTTGCA+GGG - tig0009285:9947-9966 Msa1346920:intron 45.0%
GTAATATGCCCTGCAAGTTG+AGG + tig0009285:9958-9977 None:intergenic 45.0%
CAGGGCATATTACTCAAAGG+TGG - tig0009285:9965-9984 Msa1346920:intron 45.0%
ACTCAAAGGTGGACATGTTC+TGG - tig0009285:9976-9995 Msa1346920:intron 45.0%
CTAATGCGATGACCGTAAAC+AGG + tig0009285:10085-10104 None:intergenic 45.0%
CGGTCATCGCATTAGAAACA+AGG - tig0009285:10090-10109 Msa1346920:intron 45.0%
TTGCATTCCCACCTGTGAAA+AGG - tig0009285:10132-10151 Msa1346920:intron 45.0%
! AGAGCTTCCTTTTCACAGGT+GGG + tig0009285:10142-10161 None:intergenic 45.0%
! AAGAGCTTCCTTTTCACAGG+TGG + tig0009285:10143-10162 None:intergenic 45.0%
! AGCAAGAGCTTCCTTTTCAC+AGG + tig0009285:10146-10165 None:intergenic 45.0%
!! AAAGGAAGCTCTTGCTGTTG+CGG - tig0009285:10150-10169 Msa1346920:intron 45.0%
ATGATACCTTCCAATGGGGT+GGG + tig0009285:10197-10216 None:intergenic 45.0%
AATGATACCTTCCAATGGGG+TGG + tig0009285:10198-10217 None:intergenic 45.0%
GCTGTGGTTGAACATAGTGA+AGG - tig0009285:10549-10568 Msa1346920:intron 45.0%
TTTCAACAGAGACAGAAGGG+AGG + tig0009285:10581-10600 None:intergenic 45.0%
TTGTCAAGCACGCAATAGTC+AGG + tig0009285:10660-10679 None:intergenic 45.0%
TTGTTATAGTCAGGAGCTGG+AGG - tig0009285:10978-10997 Msa1346920:intron 45.0%
! TTAGTGGGATAAGGCTTGGT+TGG - tig0009285:11661-11680 Msa1346920:CDS 45.0%
! ATTGTTGTTGTGAACTGGGC+CGG - tig0009285:11694-11713 Msa1346920:intron 45.0%
CAGAGATGATGTTCACAACC+AGG + tig0009285:12005-12024 None:intergenic 45.0%
ACTGACTAACCACTTGATGC+AGG - tig0009285:12064-12083 Msa1346920:intron 45.0%
! AAAGAGAGTTGCAAGTGCTG+TGG - tig0009285:12205-12224 Msa1346920:intron 45.0%
! AAGAGAGTTGCAAGTGCTGT+GGG - tig0009285:12206-12225 Msa1346920:intron 45.0%
GCAACTTATCTTCAGGCTTC+AGG + tig0009285:12253-12272 None:intergenic 45.0%
CATGTCATACCCGGTACTTA+TGG - tig0009285:12490-12509 Msa1346920:CDS 45.0%
CTATTGGTCCGTTTCAGTGT+AGG - tig0009285:13217-13236 Msa1346920:intron 45.0%
GTTTCAGTGTAGGTTCATGC+AGG - tig0009285:13227-13246 Msa1346920:intron 45.0%
AACAGGGGGAGGCTTAATTA+TGG - tig0009285:13413-13432 Msa1346920:intron 45.0%
TGAAGTTGTCTGCCGAGATT+TGG + tig0009285:13583-13602 None:intergenic 45.0%
GAAATCCCAAAACTGACGGA+AGG + tig0009285:13776-13795 None:intergenic 45.0%
! AAATATCCTCAAGCTCTGGC+TGG - tig0009285:14137-14156 Msa1346920:five_prime_UTR 45.0%
CAGGTTCTCTTACATGAAGG+CGG - tig0009285:14231-14250 Msa1346920:five_prime_UTR 45.0%
GGAGTTGAGACAAACAAGCA+AGG + tig0009285:14259-14278 None:intergenic 45.0%
GTTTGTCTCAACTCCATACG+TGG - tig0009285:14264-14283 Msa1346920:five_prime_UTR 45.0%
TAAATGAACCATCCTGGTCC+TGG - tig0009285:14289-14308 Msa1346920:five_prime_UTR 45.0%
TATATCATGCTTCCAGGACC+AGG + tig0009285:14304-14323 None:intergenic 45.0%
AAGGCAAAACGGGGGTTAAA+GGG + tig0009285:14573-14592 None:intergenic 45.0%
AAAGGCAAAACGGGGGTTAA+AGG + tig0009285:14574-14593 None:intergenic 45.0%
CCATTTGAAAGGCAAAACGG+GGG + tig0009285:14581-14600 None:intergenic 45.0%
!!! TTTTCAATATATATTATTTT+AGG - tig0009285:7556-7575 Msa1346920:CDS 5.0%
!!! ATTTTTACTAAATAAATAAT+AGG + tig0009285:12523-12542 None:intergenic 5.0%
TGGTGTGGATGTGAAGTGAG+TGG + tig0009285:5215-5234 None:intergenic 50.0%
CATTCTGGTCGCATTTCCGT+TGG - tig0009285:5656-5675 Msa1346920:intron 50.0%
! TGGTCGCATTTCCGTTGGTT+GGG - tig0009285:5661-5680 Msa1346920:intron 50.0%
CTTCTGATCGAAGACGTCTC+TGG - tig0009285:5759-5778 Msa1346920:intron 50.0%
AAACTCTCCCAAGCAGTCTC+GGG - tig0009285:6496-6515 Msa1346920:intron 50.0%
CCCACAGTTATATCGTGGAC+AGG + tig0009285:6768-6787 None:intergenic 50.0%
! GCCGGAGAGGTAACAAGTTT+TGG - tig0009285:6807-6826 Msa1346920:intron 50.0%
GCTTGGATATGCTAAACCCG+TGG - tig0009285:6979-6998 Msa1346920:intron 50.0%
TGCTAAACCCGTGGCATTTG+TGG - tig0009285:6988-7007 Msa1346920:intron 50.0%
TTCCCCTGTCAAGTGCTCAA+TGG + tig0009285:7167-7186 None:intergenic 50.0%
! AAACCTCTGGAGGCCAAAGT+TGG - tig0009285:7190-7209 Msa1346920:intron 50.0%
GTTGGAGATAGAGTTCCTGG+CGG - tig0009285:7208-7227 Msa1346920:intron 50.0%
!! GTTAGTTCTGAGGTTGCTGG+TGG - tig0009285:7608-7627 Msa1346920:intron 50.0%
!! GGAGTTGGTGTTGGTGTTGT+TGG - tig0009285:7651-7670 Msa1346920:intron 50.0%
CAGCTGGTGCAGTATGAATG+GGG + tig0009285:8578-8597 None:intergenic 50.0%
TCATACTGCACCAGCTGTTC+AGG - tig0009285:8581-8600 Msa1346920:CDS 50.0%
TTCTCTGCTCATCTGCTGTG+AGG - tig0009285:8628-8647 Msa1346920:CDS 50.0%
CTCATCTGCTGTGAGGATTG+AGG - tig0009285:8635-8654 Msa1346920:CDS 50.0%
AGTAGGCTGCAGGAGTAGAA+AGG + tig0009285:8709-8728 None:intergenic 50.0%
! ACAGGGACATTGACTACTGG+TGG - tig0009285:10037-10056 Msa1346920:intron 50.0%
ACAGGGCAGTACAACTGTAC+TGG - tig0009285:11232-11251 Msa1346920:intron 50.0%
! GCACCTATATTTGTTGGGGC+AGG - tig0009285:11458-11477 Msa1346920:intron 50.0%
TGGGAAGAGGGGCAGAAAAA+GGG + tig0009285:11596-11615 None:intergenic 50.0%
TTGGGAAGAGGGGCAGAAAA+AGG + tig0009285:11597-11616 None:intergenic 50.0%
ATCTGCTAACCCCGCTTAGT+GGG - tig0009285:11646-11665 Msa1346920:CDS 50.0%
TAACCCCGCTTAGTGGGATA+AGG - tig0009285:11652-11671 Msa1346920:CDS 50.0%
! AAGCCTTATCCCACTAAGCG+GGG + tig0009285:11658-11677 None:intergenic 50.0%
! CAAGCCTTATCCCACTAAGC+GGG + tig0009285:11659-11678 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+CGG + tig0009285:11660-11679 None:intergenic 50.0%
GGCCTCTTAATCTGTTAGGC+CGG + tig0009285:11716-11735 None:intergenic 50.0%
ATGATGTTCACAACCAGGGC+CGG + tig0009285:12000-12019 None:intergenic 50.0%
GTTAGTCAGTAAGGCCCAGA+AGG + tig0009285:12054-12073 None:intergenic 50.0%
TCAACGTGACCTGCATCAAG+TGG + tig0009285:12076-12095 None:intergenic 50.0%
!! CGTTGATTCACCTGGAGGAT+AGG - tig0009285:12090-12109 Msa1346920:intron 50.0%
ACATCAAAAACCCCTGGACG+AGG + tig0009285:12116-12135 None:intergenic 50.0%
! TGCAACTGCGCTACACCTTT+TGG - tig0009285:13163-13182 Msa1346920:intron 50.0%
GGGGGAGGCTTAATTATGGT+TGG - tig0009285:13417-13436 Msa1346920:intron 50.0%
! CACTTGCTGCTGCAACTGTT+GGG - tig0009285:13463-13482 Msa1346920:intron 50.0%
ATCTCGGCAGACAACTTCAC+TGG - tig0009285:13584-13603 Msa1346920:intron 50.0%
!! TGGCTCTGGCATACATCTGT+TGG - tig0009285:13645-13664 Msa1346920:intron 50.0%
! GGCTCTGGCATACATCTGTT+GGG - tig0009285:13646-13665 Msa1346920:intron 50.0%
! GCTTCCCTTCCGTCAGTTTT+GGG - tig0009285:13768-13787 Msa1346920:intron 50.0%
! CCCCCGTTTTGCCTTTCAAA+TGG - tig0009285:14578-14597 Msa1346920:five_prime_UTR 50.0%
CTGGTCGCATTTCCGTTGGT+TGG - tig0009285:5660-5679 Msa1346920:intron 55.0%
! GGTCGCATTTCCGTTGGTTG+GGG - tig0009285:5662-5681 Msa1346920:intron 55.0%
!! ATGGGGAACGCTTTGGAAGG+AGG - tig0009285:5929-5948 Msa1346920:CDS 55.0%
!! TGGGGAACGCTTTGGAAGGA+GGG - tig0009285:5930-5949 Msa1346920:CDS 55.0%
TATCGTGGACAGGAACCCTC+TGG + tig0009285:6758-6777 None:intergenic 55.0%
TTACCTCTCCGGCACCAACA+AGG + tig0009285:6800-6819 None:intergenic 55.0%
GACAGGGGAAGTCAAACCTC+TGG - tig0009285:7177-7196 Msa1346920:intron 55.0%
AGGGGAAGTCAAACCTCTGG+AGG - tig0009285:7180-7199 Msa1346920:intron 55.0%
TCTCCAACTTTGGCCTCCAG+AGG + tig0009285:7196-7215 None:intergenic 55.0%
ATAGAGTTCCTGGCGGTGCA+AGG - tig0009285:7215-7234 Msa1346920:intron 55.0%
TCTATGTTCCTTGCACCGCC+AGG + tig0009285:7226-7245 None:intergenic 55.0%
GGCGGTGCAAGGAACATAGA+TGG - tig0009285:7226-7245 Msa1346920:intron 55.0%
GCTATGCTCAAGTAGGCTGC+AGG + tig0009285:8719-8738 None:intergenic 55.0%
CTACAGAGCCTTAGGGCTCA+TGG - tig0009285:8912-8931 Msa1346920:intron 55.0%
TGCTGCAACCATGAGCCCTA+AGG + tig0009285:8923-8942 None:intergenic 55.0%
TGCAGCATCACCATGTGCCT+TGG - tig0009285:8936-8955 Msa1346920:intron 55.0%
ATCACCATGTGCCTTGGCTG+TGG - tig0009285:8942-8961 Msa1346920:intron 55.0%
TGCACAGGAGCTGATTGCTG+TGG + tig0009285:8983-9002 None:intergenic 55.0%
TGTTGCGGCAGCCATGGAAA+AGG - tig0009285:10165-10184 Msa1346920:intron 55.0%
GTTGCGGCAGCCATGGAAAA+GGG - tig0009285:10166-10185 Msa1346920:intron 55.0%
! GTGGGTAGTGCCCTTTTCCA+TGG + tig0009285:10179-10198 None:intergenic 55.0%
GTAGCAGTAAGGCCTCTACC+AGG + tig0009285:10618-10637 None:intergenic 55.0%
GATCTGCTAACCCCGCTTAG+TGG - tig0009285:11645-11664 Msa1346920:CDS 55.0%
CCGCTTAGTGGGATAAGGCT+TGG - tig0009285:11657-11676 Msa1346920:CDS 55.0%
GGCCGGCCTAACAGATTAAG+AGG - tig0009285:11711-11730 Msa1346920:intron 55.0%
TGCGACCTAAAGCCCTTGCT+TGG - tig0009285:11957-11976 Msa1346920:intron 55.0%
GCGACCTAAAGCCCTTGCTT+GGG - tig0009285:11958-11977 Msa1346920:intron 55.0%
GCAACCCAAGCAAGGGCTTT+AGG + tig0009285:11965-11984 None:intergenic 55.0%
!! GCAGGTCACGTTGATTCACC+TGG - tig0009285:12082-12101 Msa1346920:intron 55.0%
!! GGTCACGTTGATTCACCTGG+AGG - tig0009285:12085-12104 Msa1346920:intron 55.0%
ACAGTTGCAGCAGCAAGTGC+TGG + tig0009285:13462-13481 None:intergenic 55.0%
! GCACTTGCTGCTGCAACTGT+TGG - tig0009285:13462-13481 Msa1346920:intron 55.0%
! GGCTTCCCTTCCGTCAGTTT+TGG - tig0009285:13767-13786 Msa1346920:intron 55.0%
AAGCAACCAGCCAGAGCTTG+AGG + tig0009285:14146-14165 None:intergenic 55.0%
TCATGCTTCCAGGACCAGGA+TGG + tig0009285:14300-14319 None:intergenic 55.0%
!! TGTCCTTGTTGGTGCCGGAG+AGG - tig0009285:6794-6813 Msa1346920:intron 60.0%
TGGTAATTGTGGCACCGCCG+TGG + tig0009285:7147-7166 None:intergenic 60.0%
TGCCTTGGCTGTGGCTCCAT+TGG - tig0009285:8951-8970 Msa1346920:intron 60.0%
TGCCAATGGAGCCACAGCCA+AGG + tig0009285:8956-8975 None:intergenic 60.0%
!! TCTTGCTGTTGCGGCAGCCA+TGG - tig0009285:10159-10178 Msa1346920:intron 60.0%
!! AAGGGCACTACCCACCCCAT+TGG - tig0009285:10184-10203 Msa1346920:intron 60.0%
GCACTACCCACCCCATTGGA+AGG - tig0009285:10188-10207 Msa1346920:intron 60.0%
! AAGCCCTTGCTTGGGTTGCC+TGG - tig0009285:11966-11985 Msa1346920:intron 60.0%
CACAACCAGGGCCGGTCTAA+GGG + tig0009285:11992-12011 None:intergenic 60.0%
TCACAACCAGGGCCGGTCTA+AGG + tig0009285:11993-12012 None:intergenic 60.0%
TGGAGGATAGGCCTCGTCCA+GGG - tig0009285:12102-12121 Msa1346920:intron 60.0%
GGAGCCACAGCCAAGGCACA+TGG + tig0009285:8949-8968 None:intergenic 65.0%
GGGCCAGGCAACCCAAGCAA+GGG + tig0009285:11972-11991 None:intergenic 65.0%
AGGGCCAGGCAACCCAAGCA+AGG + tig0009285:11973-11992 None:intergenic 65.0%
GGGTTGCCTGGCCCTTAGAC+CGG - tig0009285:11978-11997 Msa1346920:intron 65.0%
CTGGACGAGGCCTATCCTCC+AGG + tig0009285:12103-12122 None:intergenic 65.0%
CTGGAGGATAGGCCTCGTCC+AGG - tig0009285:12101-12120 Msa1346920:intron 65.0%
GGAGGATAGGCCTCGTCCAG+GGG - tig0009285:12103-12122 Msa1346920:intron 65.0%
CCAGGGCCGGTCTAAGGGCC+AGG + tig0009285:11987-12006 None:intergenic 75.0%
CCTGGCCCTTAGACCGGCCC+TGG - tig0009285:11984-12003 Msa1346920:intron 75.0%
Chromosome Type Strat End Strand Name
tig0009285 gene 5023 14678 5023 ID=Msa1346920;Name=Msa1346920
tig0009285 mRNA 5023 14678 5023 ID=Msa1346920-mRNA-1;Parent=Msa1346920;Name=Msa1346920-mRNA-1;_AED=0.17;_eAED=0.17;_QI=543|0.81|0.91|1|1|1|12|265|637
tig0009285 exon 5023 5467 5023 ID=Msa1346920-mRNA-1:exon:5744;Parent=Msa1346920-mRNA-1
tig0009285 exon 5889 5975 5889 ID=Msa1346920-mRNA-1:exon:5743;Parent=Msa1346920-mRNA-1
tig0009285 exon 6096 6283 6096 ID=Msa1346920-mRNA-1:exon:5742;Parent=Msa1346920-mRNA-1
tig0009285 exon 7399 7615 7399 ID=Msa1346920-mRNA-1:exon:5741;Parent=Msa1346920-mRNA-1
tig0009285 exon 8580 8714 8580 ID=Msa1346920-mRNA-1:exon:5740;Parent=Msa1346920-mRNA-1
tig0009285 exon 9048 9153 9048 ID=Msa1346920-mRNA-1:exon:5739;Parent=Msa1346920-mRNA-1
tig0009285 exon 9492 9733 9492 ID=Msa1346920-mRNA-1:exon:5738;Parent=Msa1346920-mRNA-1
tig0009285 exon 10693 10805 10693 ID=Msa1346920-mRNA-1:exon:5737;Parent=Msa1346920-mRNA-1
tig0009285 exon 11489 11684 11489 ID=Msa1346920-mRNA-1:exon:5736;Parent=Msa1346920-mRNA-1
tig0009285 exon 12437 12583 12437 ID=Msa1346920-mRNA-1:exon:5735;Parent=Msa1346920-mRNA-1
tig0009285 exon 12886 13070 12886 ID=Msa1346920-mRNA-1:exon:5734;Parent=Msa1346920-mRNA-1
tig0009285 exon 14018 14678 14018 ID=Msa1346920-mRNA-1:exon:5733;Parent=Msa1346920-mRNA-1
tig0009285 five_prime_UTR 14136 14678 14136 ID=Msa1346920-mRNA-1:five_prime_utr;Parent=Msa1346920-mRNA-1
tig0009285 CDS 14018 14135 14018 ID=Msa1346920-mRNA-1:cds;Parent=Msa1346920-mRNA-1
tig0009285 CDS 12886 13070 12886 ID=Msa1346920-mRNA-1:cds;Parent=Msa1346920-mRNA-1
tig0009285 CDS 12437 12583 12437 ID=Msa1346920-mRNA-1:cds;Parent=Msa1346920-mRNA-1
tig0009285 CDS 11489 11684 11489 ID=Msa1346920-mRNA-1:cds;Parent=Msa1346920-mRNA-1
tig0009285 CDS 10693 10805 10693 ID=Msa1346920-mRNA-1:cds;Parent=Msa1346920-mRNA-1
tig0009285 CDS 9492 9733 9492 ID=Msa1346920-mRNA-1:cds;Parent=Msa1346920-mRNA-1
tig0009285 CDS 9048 9153 9048 ID=Msa1346920-mRNA-1:cds;Parent=Msa1346920-mRNA-1
tig0009285 CDS 8580 8714 8580 ID=Msa1346920-mRNA-1:cds;Parent=Msa1346920-mRNA-1
tig0009285 CDS 7399 7615 7399 ID=Msa1346920-mRNA-1:cds;Parent=Msa1346920-mRNA-1
tig0009285 CDS 6096 6283 6096 ID=Msa1346920-mRNA-1:cds;Parent=Msa1346920-mRNA-1
tig0009285 CDS 5889 5975 5889 ID=Msa1346920-mRNA-1:cds;Parent=Msa1346920-mRNA-1
tig0009285 CDS 5288 5467 5288 ID=Msa1346920-mRNA-1:cds;Parent=Msa1346920-mRNA-1
tig0009285 three_prime_UTR 5023 5287 5023 ID=Msa1346920-mRNA-1:three_prime_utr;Parent=Msa1346920-mRNA-1
Gene Sequence

>Msa1346920

ATGTTGCGTATCAACTGCTTTGTTTGTTGCTGCAGCTATTTCCCCTCATACTTTGCCCAAATCACTCATCAAACCTGTCCAAAACTCGTTCATTCTGGTCGCATTTCCGTTGGTTGGGCTGAAGAGTATTTCACAAGTCGTTCAATGGTTGATGTTAAAGAGTTGAAGGAGAACAATCCAGAATTTGCACTTGTTCTTGATACAAAAGATAATAAACTTCCTAATACATTTGATTTCAAATACCAGAGGGTTCCTGTCCACGATATAACTGTGGGATCATATGTCCTTGTTGGTGCCGGAGAGTCTGTGCCTGTAGATTGTGAAGTTTTCCACGGCGGTGCCACAATTACCATTGAGCACTTGACAGGGGAAGTCAAACCTCTGGAGGCCAAAGTTGGAGATAGAGTTCCTGGCGGTGCAAGGAACATAGATGGTAGAATAATTGTGAAGGTAACAAAGACATGGAAGGAATCAACTCTAAGCAAAATTGTGCAGTTGACTGAAGAAGCTCAGTTGAATAGACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAGCGTTACAGCAAAGTTGTTGTGGTGTTATCAATTGCTATTGCTGTTCTTGGTCCACTTGTATTTAAGTGGCCATTCTTTAGTACACCAGCTTGCAGAGGTTCTATCTACAGAGCCTTAGGGCTCATGGTTGCAGCATCACCATGTGCCTTGGCTGTGGCTCCATTGGCATATGCCACAGCAATCAGCTCCTGTGCAAAAAAGGGCATATTACTCAAAGGTGGACATGTTCTGGATGCACTAGCTTCATGCCATACCATTGCATTTGATAAAACAGGGACATTGACTACTGGTGGACTTGTATTCAAGGCAATTGAGCCTGTTTACGGTCATCGCATTAGAAACAAGGAATCAAACATATCTTCTTGTTGCATTCCCACCTGTGAAAAGGAAGCTCTTGCTGTTGCGGCAGCCATGGAAAAGGGCACTACCCACCCCATTGGAAGGGCTGTGGTTGAACATAGTGAAGGGAAAGACCTCCCTTCTGTCTCTGTTGAAAATTTTGAGTACTTTCCTGGTAGAGGCCTTACTGCTACTGTTAACAGCATTGAGTCAGGAGCTGGAGGTGCTAACCTATTGAAAGCATCACTTGGGTCTATAGATTTCATCACTTCATTTTGTCAATCTGAAGATGAATCAAAAAAGGTCAAGGAAGCTATTAATGCATCTTCTTATGGCAGTGAATTTGTCACGTTGATTCACCTGGAGGATAGGCCTCGTCCAGGGGTTTTTGATGTTATTCAAGAATTGCAAGATGAAGCAAAGTTCCGTGTGATGATGTTAACTGGTGATCATGAATATAGTGCAAAGAGAGTTGCAAGTGCTGTGGGTATCAGAGAGTTTCATTGCAACCTGAAGCCTGAAGATAAGTTGCGTCATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTTGGTGAAGGTATTAATGATGCTCCAGCACTTGCTGCTGCAACTGTTGGGATTGTGCTTGCTCATCGTGCTAGTGCAACTGCTATAGCTGTTGCAGATGTGCTGTTGCTTCGTGAAAATATTTCTGCAGTGCCATTCTGTATTGCCAAATCTCGGCAGACAACTTCACTGATTAAGCAAAATGTAGCTCTGGCATTGTCTAGCATATTCTTGGCTTCCCTTCCGTCAGTTTTGGGATTTCTTCCATTGTGGATAACGGTTCTCTTACATGAAGGCGGAACCTTGCTTGTTTGTCTCAACTCCATACGTGGTTTAAATGAACCATCCTGGTCCTGGAAGCATGATATATTACAGTTGATTGGCAAGGTTAAATCTAGACTCTCCTCTCTTAGGACAAATATAACAGGCTCAAGTAGCATTACAACCGCGAATTTGTGA
Protein sequence

>Msa1346920

MLRINCFVCCCSYFPSYFAQITHQTCPKLVHSGRISVGWAEEYFTSRSMVDVKELKENNPEFALVLDTKDNKLPNTFDFKYQRVPVHDITVGSYVLVGAGESVPVDCEVFHGGATITIEHLTGEVKPLEAKVGDRVPGGARNIDGRIIVKVTKTWKESTLSKIVQLTEEAQLNRPKLQRWLDEFGERYSKVVVVLSIAIAVLGPLVFKWPFFSTPACRGSIYRALGLMVAASPCALAVAPLAYATAISSCAKKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLVFKAIEPVYGHRIRNKESNISSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVEHSEGKDLPSVSVENFEYFPGRGLTATVNSIESGAGGANLLKASLGSIDFITSFCQSEDESKKVKEAINASSYGSEFVTLIHLEDRPRPGVFDVIQELQDEAKFRVMMLTGDHEYSAKRVASAVGIREFHCNLKPEDKLRHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALSSIFLASLPSVLGFLPLWITVLLHEGGTLLVCLNSIRGLNEPSWSWKHDILQLIGKVKSRLSSLRTNITGSSSITTANL*