Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368790 | XP_003600792.2 | 92.023 | 514 | 10 | 3 | 1 | 484 | 1 | 513 | 0.0 | 970 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368790 | sp|Q0WSN2|DAR2_ARATH | 60.583 | 515 | 158 | 7 | 8 | 484 | 21 | 528 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368790 | G7JA19 | 92.023 | 514 | 10 | 3 | 1 | 484 | 1 | 513 | 0.0 | 970 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0368790 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa0368790 | 0.871202 | 8.179954e-67 | -8.615850e-47 |
| Msa0025690 | Msa0368790 | 0.813299 | 2.745544e-51 | -8.615850e-47 |
| Msa0053480 | Msa0368790 | 0.825555 | 4.397389e-54 | -8.615850e-47 |
| Msa0093440 | Msa0368790 | 0.806114 | 9.624600e-50 | -8.615850e-47 |
| Msa0117300 | Msa0368790 | 0.804110 | 2.528551e-49 | -8.615850e-47 |
| Msa0160650 | Msa0368790 | 0.815179 | 1.055382e-51 | -8.615850e-47 |
| Msa0184030 | Msa0368790 | 0.802789 | 4.748241e-49 | -8.615850e-47 |
| Msa0225370 | Msa0368790 | 0.813857 | 2.069660e-51 | -8.615850e-47 |
| Msa0368790 | Msa0419300 | 0.813488 | 2.495140e-51 | -8.615850e-47 |
| Msa0368790 | Msa0462740 | 0.850400 | 1.739771e-60 | -8.615850e-47 |
| Msa0368790 | Msa0508330 | 0.872144 | 3.985822e-67 | -8.615850e-47 |
| Msa0368790 | Msa0535020 | 0.809308 | 2.017899e-50 | -8.615850e-47 |
| Msa0368790 | Msa0535050 | 0.807567 | 4.745393e-50 | -8.615850e-47 |
| Msa0368790 | Msa0575540 | 0.810374 | 1.189826e-50 | -8.615850e-47 |
| Msa0368790 | Msa0641020 | 0.804767 | 1.843989e-49 | -8.615850e-47 |
| Msa0368790 | Msa0641030 | 0.814937 | 1.194496e-51 | -8.615850e-47 |
| Msa0368790 | Msa0648200 | 0.806415 | 8.318787e-50 | -8.615850e-47 |
| Msa0368790 | Msa0664110 | 0.812233 | 4.700738e-51 | -8.615850e-47 |
| Msa0368790 | Msa0664130 | 0.811152 | 8.076454e-51 | -8.615850e-47 |
| Msa0368790 | Msa0691140 | 0.832237 | 1.060351e-55 | -8.615850e-47 |
| Msa0368790 | Msa0691850 | 0.808835 | 2.547329e-50 | -8.615850e-47 |
| Msa0368790 | Msa0756940 | 0.833738 | 4.489158e-56 | -8.615850e-47 |
| Msa0368790 | Msa0818950 | 0.801864 | 7.363489e-49 | -8.615850e-47 |
| Msa0368790 | Msa0836510 | 0.836325 | 1.000061e-56 | -8.615850e-47 |
| Msa0368790 | Msa0912470 | 0.800467 | 1.421834e-48 | -8.615850e-47 |
| Msa0368790 | Msa1108780 | 0.805270 | 1.447275e-49 | -8.615850e-47 |
| Msa0368790 | Msa1125450 | 0.805680 | 1.187804e-49 | -8.615850e-47 |
| Msa0368790 | Msa1166170 | 0.837829 | 4.126960e-57 | -8.615850e-47 |
| Msa0368790 | Msa1166270 | 0.839331 | 1.689129e-57 | -8.615850e-47 |
| Msa0368790 | Msa1182400 | 0.802984 | 4.327174e-49 | -8.615850e-47 |
| Msa0368790 | Msa1190460 | 0.843281 | 1.543555e-58 | -8.615850e-47 |
| Msa0368790 | Msa1199750 | 0.812204 | 4.769972e-51 | -8.615850e-47 |
| Msa0368790 | Msa1204390 | 0.842204 | 2.982820e-58 | -8.615850e-47 |
| Msa0368790 | Msa1230190 | 0.802017 | 6.848306e-49 | -8.615850e-47 |
| Msa0368790 | Msa1244300 | 0.835362 | 1.753703e-56 | -8.615850e-47 |
| Msa0368790 | Msa1296610 | 0.811361 | 7.275489e-51 | -8.615850e-47 |
| Msa0368790 | Msa1328600 | 0.813887 | 2.038253e-51 | -8.615850e-47 |
| Msa0368790 | Msa1329020 | 0.846143 | 2.612780e-59 | -8.615850e-47 |
| Msa0368790 | Msa1346920 | 0.844384 | 7.816908e-59 | -8.615850e-47 |
| Msa0368790 | Msa1410180 | 0.830041 | 3.670614e-55 | -8.615850e-47 |
| Msa0368790 | Msa1432250 | 0.805090 | 1.578631e-49 | -8.615850e-47 |
| Msa0368790 | Msa1433380 | 0.804977 | 1.667206e-49 | -8.615850e-47 |
| Msa0368790 | Msa1443440 | 0.810075 | 1.380503e-50 | -8.615850e-47 |
| Msa0368790 | Msa1445250 | 0.820376 | 7.086131e-53 | -8.615850e-47 |
| Msa0368790 | Msa1456410 | 0.805142 | 1.539369e-49 | -8.615850e-47 |
| Msa0368790 | Msa1457070 | 0.815757 | 7.850689e-52 | -8.615850e-47 |
| Msa0368790 | Msa1459630 | 0.817325 | 3.495972e-52 | -8.615850e-47 |
| Msa0266380 | Msa0368790 | 0.811567 | 6.564184e-51 | -8.615850e-47 |
| Msa0328840 | Msa0368790 | 0.800147 | 1.651884e-48 | -8.615850e-47 |
| Msa0343200 | Msa0368790 | 0.843037 | 1.792265e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368790 | MtrunA17_Chr3g0112601 | 92.023 | 514 | 10 | 3 | 1 | 484 | 1 | 513 | 0.0 | 970 |
| Msa0368790 | MtrunA17_Chr5g0436051 | 68.992 | 516 | 116 | 6 | 1 | 484 | 113 | 616 | 0.0 | 684 |
| Msa0368790 | MtrunA17_Chr8g0373781 | 52.125 | 447 | 175 | 6 | 71 | 483 | 90 | 531 | 1.02e-141 | 417 |
| Msa0368790 | MtrunA17_Chr1g0154501 | 47.870 | 493 | 191 | 13 | 32 | 483 | 1 | 468 | 1.09e-141 | 415 |
| Msa0368790 | MtrunA17_Chr5g0403301 | 57.475 | 301 | 105 | 3 | 185 | 483 | 27 | 306 | 1.37e-110 | 329 |
| Msa0368790 | MtrunA17_Chr5g0403271 | 67.320 | 153 | 50 | 0 | 331 | 483 | 1 | 153 | 1.44e-60 | 195 |
| Msa0368790 | MtrunA17_Chr5g0403261 | 35.753 | 372 | 125 | 10 | 32 | 295 | 1 | 366 | 4.73e-57 | 193 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368790 | AT2G39830.1 | 60.583 | 515 | 158 | 7 | 8 | 484 | 21 | 528 | 0.0 | 588 |
| Msa0368790 | AT2G39830.2 | 60.232 | 518 | 158 | 8 | 8 | 484 | 21 | 531 | 0.0 | 582 |
| Msa0368790 | AT2G39830.3 | 59.806 | 515 | 153 | 8 | 8 | 484 | 21 | 519 | 0.0 | 573 |
| Msa0368790 | AT2G39830.4 | 57.673 | 404 | 130 | 5 | 8 | 375 | 21 | 419 | 3.35e-157 | 454 |
| Msa0368790 | AT1G19270.1 | 44.527 | 539 | 206 | 7 | 32 | 484 | 1 | 532 | 7.21e-146 | 428 |
| Msa0368790 | AT1G19270.2 | 44.527 | 539 | 206 | 7 | 32 | 484 | 1 | 532 | 7.21e-146 | 428 |
| Msa0368790 | AT4G36860.1 | 53.167 | 442 | 155 | 6 | 74 | 483 | 132 | 553 | 8.25e-145 | 426 |
| Msa0368790 | AT4G36860.3 | 53.167 | 442 | 155 | 6 | 74 | 483 | 156 | 577 | 1.57e-144 | 426 |
| Msa0368790 | AT4G36860.2 | 50.299 | 334 | 117 | 5 | 74 | 375 | 132 | 448 | 1.72e-103 | 317 |
| Msa0368790 | AT5G66620.1 | 38.492 | 504 | 253 | 10 | 8 | 476 | 159 | 640 | 2.72e-102 | 320 |
| Msa0368790 | AT5G66620.3 | 38.492 | 504 | 253 | 10 | 8 | 476 | 150 | 631 | 2.88e-102 | 319 |
| Msa0368790 | AT5G66620.4 | 38.492 | 504 | 253 | 10 | 8 | 476 | 150 | 631 | 2.88e-102 | 319 |
| Msa0368790 | AT5G66610.3 | 41.805 | 421 | 210 | 7 | 80 | 477 | 16 | 424 | 3.27e-96 | 297 |
| Msa0368790 | AT5G66610.1 | 41.805 | 421 | 210 | 7 | 80 | 477 | 143 | 551 | 3.33e-95 | 299 |
| Msa0368790 | AT5G66630.1 | 42.978 | 356 | 176 | 5 | 145 | 476 | 346 | 698 | 1.09e-89 | 288 |
| Msa0368790 | AT5G66610.2 | 39.286 | 448 | 210 | 8 | 80 | 477 | 143 | 578 | 3.03e-89 | 284 |
| Msa0368790 | AT5G66640.3 | 44.444 | 324 | 165 | 5 | 166 | 476 | 10 | 331 | 1.59e-86 | 270 |
| Msa0368790 | AT5G66640.1 | 44.444 | 324 | 165 | 5 | 166 | 476 | 117 | 438 | 3.76e-85 | 270 |
| Msa0368790 | AT5G66640.7 | 44.444 | 324 | 165 | 5 | 166 | 476 | 117 | 438 | 3.76e-85 | 270 |
| Msa0368790 | AT5G66640.5 | 37.444 | 446 | 234 | 10 | 71 | 476 | 30 | 470 | 4.01e-85 | 270 |
| Msa0368790 | AT5G66640.4 | 44.444 | 324 | 165 | 5 | 166 | 476 | 148 | 469 | 1.04e-84 | 269 |
| Msa0368790 | AT5G17890.1 | 39.618 | 419 | 196 | 8 | 104 | 483 | 1208 | 1608 | 2.44e-82 | 278 |
| Msa0368790 | AT5G66640.6 | 34.081 | 446 | 245 | 11 | 71 | 476 | 30 | 466 | 2.74e-69 | 229 |
| Msa0368790 | AT5G66640.2 | 39.815 | 324 | 176 | 6 | 166 | 476 | 148 | 465 | 9.21e-69 | 228 |
| Msa0368790 | AT5G66620.2 | 32.698 | 367 | 192 | 9 | 8 | 341 | 150 | 494 | 8.21e-54 | 189 |
Find 132 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCATAACCCTCTTGTTTC+TGG | 0.157651 | 3_1:-65686622 | None:intergenic |
| CTTTCACACCCTTGCATATA+TGG | 0.193810 | 3_1:+65683757 | Msa0368790:CDS |
| ATTGGAGGTCATCGATTAAT+AGG | 0.218874 | 3_1:+65686785 | Msa0368790:CDS |
| CAGCTTATGGCGGAGGCTTT+AGG | 0.247557 | 3_1:+65687550 | Msa0368790:CDS |
| ATCCAAAGTTGAGAATAAAT+TGG | 0.266485 | 3_1:+65687488 | Msa0368790:CDS |
| GATACTCTATGGTAATTGTT+TGG | 0.269551 | 3_1:+65685301 | Msa0368790:CDS |
| CTGTATCCGCGGGGATAAAA+AGG | 0.275435 | 3_1:-65684915 | None:intergenic |
| ACGGCTATTCTTGTTCTCTA+TGG | 0.281959 | 3_1:+65686851 | Msa0368790:CDS |
| CTTCTCTGAGAAGTTTGAAT+TGG | 0.283034 | 3_1:+65687663 | Msa0368790:three_prime_UTR |
| AATACCTCACGCTCAGTAAT+AGG | 0.302681 | 3_1:-65685380 | None:intergenic |
| CACTTGCAGATACCTATAAA+TGG | 0.315905 | 3_1:+65686074 | Msa0368790:intron |
| CAGATACCTATAAATGGTTC+TGG | 0.327287 | 3_1:+65686080 | Msa0368790:intron |
| AATGATTCTTCTCCAGCTTA+TGG | 0.331932 | 3_1:+65687537 | Msa0368790:CDS |
| ACCGCCACCCCTTCCTCTAT+TGG | 0.349455 | 3_1:-65684248 | None:intergenic |
| ACCCAATTTATTCTCAACTT+TGG | 0.354011 | 3_1:-65687490 | None:intergenic |
| ATACTCTATGGTAATTGTTT+GGG | 0.355449 | 3_1:+65685302 | Msa0368790:CDS |
| ATCAAACCAGAACCATTTAT+AGG | 0.366116 | 3_1:-65686086 | None:intergenic |
| ACTGACCAGTCAAACGAATA+TGG | 0.374788 | 3_1:-65687620 | None:intergenic |
| TTTCTCGTTAAGGATATAGA+TGG | 0.392201 | 3_1:+65684811 | Msa0368790:intron |
| TTCAAAATTGGATCCAATAG+AGG | 0.394023 | 3_1:+65684235 | Msa0368790:CDS |
| AATGCAGCTGTTAATAAATA+CGG | 0.395213 | 3_1:+65687579 | Msa0368790:CDS |
| GAGAAGAATCATTGGCAATC+TGG | 0.404259 | 3_1:-65687527 | None:intergenic |
| GTTCTGTTTACCAAGGATCT+AGG | 0.408729 | 3_1:-65684319 | None:intergenic |
| TCCTCCTGCAATTTCATGCT+CGG | 0.411253 | 3_1:+65687717 | Msa0368790:three_prime_UTR |
| AGTATAGGTGTCACCCCTAT+TGG | 0.411574 | 3_1:+65686111 | Msa0368790:CDS |
| TTGTAGCTGTGAAAGATTAG+AGG | 0.414076 | 3_1:+65686181 | Msa0368790:CDS |
| TCATACTCAGAGAGGAAGTC+TGG | 0.418210 | 3_1:+65684187 | Msa0368790:CDS |
| CCCTCCGAGCATGAAATTGC+AGG | 0.420712 | 3_1:-65687721 | None:intergenic |
| TTTATAAATATAAACCTTTG+AGG | 0.423130 | 3_1:-65687220 | None:intergenic |
| GCAAGAGAAAATGAAAATGA+TGG | 0.426655 | 3_1:-65683658 | None:intergenic |
| CTTGACCATATTCGTTTGAC+TGG | 0.427685 | 3_1:+65687615 | Msa0368790:CDS |
| ATAGGCTTCCATCGTCGTTA+TGG | 0.428862 | 3_1:+65683708 | Msa0368790:exon |
| CTAAAGCCTCCGCCATAAGC+TGG | 0.441176 | 3_1:-65687549 | None:intergenic |
| TCCAAAGTTGAGAATAAATT+GGG | 0.442486 | 3_1:+65687489 | Msa0368790:CDS |
| ACTGATGATGATTATGCAAA+AGG | 0.448006 | 3_1:+65684843 | Msa0368790:CDS |
| GTTCTGGTTTGATTGAGTAT+AGG | 0.459803 | 3_1:+65686096 | Msa0368790:CDS |
| CAAGAGAAAATGAAAATGAT+GGG | 0.461185 | 3_1:-65683657 | None:intergenic |
| TTGGAGGTCATCGATTAATA+GGG | 0.465099 | 3_1:+65686786 | Msa0368790:CDS |
| GGGCGAAAGATACTTTAGAT+TGG | 0.466962 | 3_1:+65686317 | Msa0368790:CDS |
| TGCAACAAGGAGATACTCTA+TGG | 0.469294 | 3_1:+65685290 | Msa0368790:CDS |
| TGTTGTTTCAGATACATAGA+TGG | 0.470430 | 3_1:+65686756 | Msa0368790:intron |
| GAGATGAGTGCATGCGATCC+TGG | 0.470780 | 3_1:-65684869 | None:intergenic |
| GTCAGGTTCTTTCTTACATG+TGG | 0.478393 | 3_1:+65687361 | Msa0368790:CDS |
| AATGATGGGGAGAGAAAAGA+AGG | 0.481215 | 3_1:-65683643 | None:intergenic |
| GAGTGACACCGAAAGCAGTC+TGG | 0.486184 | 3_1:-65685347 | None:intergenic |
| GATTAGAAAATGTGAAGTTA+CGG | 0.488829 | 3_1:+65686832 | Msa0368790:CDS |
| GCGAGCTCCGCCTAGATCCT+TGG | 0.490552 | 3_1:+65684309 | Msa0368790:CDS |
| AGTAGTAGTGAATTTATACT+TGG | 0.492649 | 3_1:-65687767 | None:intergenic |
| CAAATCCCCATGCTTCTAGT+TGG | 0.496791 | 3_1:+65686462 | Msa0368790:CDS |
| TCCAATAGAGGAAGGGGTGG+CGG | 0.500442 | 3_1:+65684247 | Msa0368790:CDS |
| TCTCTAATAGCATGATAAAG+AGG | 0.502415 | 3_1:-65686405 | None:intergenic |
| CTCTTGTTTCTGGCATGTGA+TGG | 0.503693 | 3_1:-65686612 | None:intergenic |
| TAGAACTAGGAAGGAGGAAG+AGG | 0.505835 | 3_1:+65684654 | Msa0368790:CDS |
| CACATACCTTCCTCGACTGC+AGG | 0.506229 | 3_1:-65687339 | None:intergenic |
| AGGATAACCGTGCTAGAACT+AGG | 0.513141 | 3_1:+65684641 | Msa0368790:intron |
| AGATACTTTAGATTGGATGA+TGG | 0.513463 | 3_1:+65686324 | Msa0368790:CDS |
| GAAGTTGTTCTTATTACAGT+GGG | 0.516770 | 3_1:-65687644 | None:intergenic |
| TACATTCTTCTCTCCGACGA+TGG | 0.517179 | 3_1:-65686505 | None:intergenic |
| TAAGGATATAGATGGCGAAC+GGG | 0.518979 | 3_1:+65684819 | Msa0368790:intron |
| GCCTCCTACTCGTCAAAGAA+AGG | 0.519130 | 3_1:+65687459 | Msa0368790:CDS |
| CTTGAAGCAGAAGTTATGTC+AGG | 0.522730 | 3_1:+65687384 | Msa0368790:CDS |
| TCTCTTCCAACTAGAAGCAT+GGG | 0.524105 | 3_1:-65686468 | None:intergenic |
| CTTCCTCGACTGCAGGATCA+AGG | 0.524983 | 3_1:-65687332 | None:intergenic |
| CATTCTCTTAAATTTAAACA+AGG | 0.527645 | 3_1:-65687800 | None:intergenic |
| TCTTCTCCAGCTTATGGCGG+AGG | 0.528067 | 3_1:+65687543 | Msa0368790:CDS |
| TTCTCTTCCAACTAGAAGCA+TGG | 0.528812 | 3_1:-65686469 | None:intergenic |
| GAAGCTGCGGCTGATGTTGA+TGG | 0.531468 | 3_1:-65687420 | None:intergenic |
| GAATCTGCTATAACAGATAC+CGG | 0.533194 | 3_1:+65686372 | Msa0368790:CDS |
| CACACGAATTGATGCATGGT+TGG | 0.536922 | 3_1:+65687192 | Msa0368790:CDS |
| CCATCGCATAACAGAGTATG+TGG | 0.539120 | 3_1:+65685263 | Msa0368790:CDS |
| ATAAGCTGGAGAAGAATCAT+TGG | 0.542129 | 3_1:-65687535 | None:intergenic |
| AATTTCATGCTCGGAGGGGA+AGG | 0.543487 | 3_1:+65687726 | Msa0368790:three_prime_UTR |
| CATGGTTGGTTACGCCTCAA+AGG | 0.543559 | 3_1:+65687206 | Msa0368790:CDS |
| AATTGGATCCAATAGAGGAA+GGG | 0.544250 | 3_1:+65684240 | Msa0368790:CDS |
| AGAATATTGATATCTGATGA+AGG | 0.544355 | 3_1:-65683736 | None:intergenic |
| GAAGATTTAAAGATACCAGC+AGG | 0.544900 | 3_1:+65684709 | Msa0368790:CDS |
| CGCGCCTTTCTTTGACGAGT+AGG | 0.545826 | 3_1:-65687463 | None:intergenic |
| CTTGATCCTGCAGTCGAGGA+AGG | 0.549426 | 3_1:+65687333 | Msa0368790:CDS |
| CCTCCTTCCTAGTTCTAGCA+CGG | 0.551271 | 3_1:-65684648 | None:intergenic |
| CCTGCAATTTCATGCTCGGA+GGG | 0.551389 | 3_1:+65687721 | Msa0368790:three_prime_UTR |
| TGATTATGCAAAAGGACTCC+AGG | 0.551524 | 3_1:+65684851 | Msa0368790:CDS |
| AGTCGAGGAAGGTATGTGTC+AGG | 0.552796 | 3_1:+65687344 | Msa0368790:CDS |
| ATAAAGAGGCTGACATTCAC+CGG | 0.553374 | 3_1:-65686391 | None:intergenic |
| GAAAATTTACCTGTATCCGC+GGG | 0.556759 | 3_1:-65684925 | None:intergenic |
| CTTTGACGAGTAGGAGGCGG+AGG | 0.559142 | 3_1:-65687454 | None:intergenic |
| CGACTGCAGGATCAAGGTTG+CGG | 0.559913 | 3_1:-65687326 | None:intergenic |
| TATGGGTGCAGGTTACTGAC+AGG | 0.560288 | 3_1:+65687158 | Msa0368790:intron |
| ACTTTAGATTGGATGATGGA+CGG | 0.560406 | 3_1:+65686328 | Msa0368790:CDS |
| AGAAAATACCATATATGCAA+GGG | 0.562357 | 3_1:-65683765 | None:intergenic |
| AAGAAAATACCATATATGCA+AGG | 0.562532 | 3_1:-65683766 | None:intergenic |
| CAACCTTGATCCTGCAGTCG+AGG | 0.569513 | 3_1:+65687329 | Msa0368790:CDS |
| AAATTGGATCCAATAGAGGA+AGG | 0.570246 | 3_1:+65684239 | Msa0368790:CDS |
| GTATTATCATGTTCATGAGA+TGG | 0.570316 | 3_1:-65686149 | None:intergenic |
| CATGCATCAATTCGTGTGCA+AGG | 0.577759 | 3_1:-65687187 | None:intergenic |
| TGACAGTCTGTTCTTCTGAA+AGG | 0.579709 | 3_1:-65686642 | None:intergenic |
| AAGGTAAAGGAGCGCATGGA+GGG | 0.580876 | 3_1:-65684896 | None:intergenic |
| ATTGGATCCAATAGAGGAAG+GGG | 0.580906 | 3_1:+65684241 | Msa0368790:CDS |
| GCCTTTCTTTGACGAGTAGG+AGG | 0.581137 | 3_1:-65687460 | None:intergenic |
| TCCTGCAATTTCATGCTCGG+AGG | 0.583723 | 3_1:+65687720 | Msa0368790:three_prime_UTR |
| AGAAGTTGTTCTTATTACAG+TGG | 0.596071 | 3_1:-65687645 | None:intergenic |
| TTGTTCTCTATGGTCTTCCG+AGG | 0.596093 | 3_1:+65686861 | Msa0368790:CDS |
| CCACATACTCTGTTATGCGA+TGG | 0.597820 | 3_1:-65685263 | None:intergenic |
| CTGTAGACGAAAACATGGCT+TGG | 0.602540 | 3_1:+65684287 | Msa0368790:CDS |
| CATCACATGCCAGAAACAAG+AGG | 0.608056 | 3_1:+65686613 | Msa0368790:CDS |
| GCTATTAGAGACTATTACGA+AGG | 0.610014 | 3_1:+65686417 | Msa0368790:CDS |
| TTTCTTTGACGAGTAGGAGG+CGG | 0.611450 | 3_1:-65687457 | None:intergenic |
| GGAAAATTTACCTGTATCCG+CGG | 0.614083 | 3_1:-65684926 | None:intergenic |
| TTAAGGATATAGATGGCGAA+CGG | 0.616195 | 3_1:+65684818 | Msa0368790:intron |
| TAACCGTGCTAGAACTAGGA+AGG | 0.619072 | 3_1:+65684645 | Msa0368790:CDS |
| GGTAGAAGAAGAAGAAGCTG+CGG | 0.625167 | 3_1:-65687433 | None:intergenic |
| ACCTTCTGCTGGAAGTCTCG+GGG | 0.625683 | 3_1:+65686297 | Msa0368790:intron |
| GATTCTTCTCCAGCTTATGG+CGG | 0.631107 | 3_1:+65687540 | Msa0368790:CDS |
| CTCTTCCAACTAGAAGCATG+GGG | 0.633927 | 3_1:-65686467 | None:intergenic |
| AAGAGAAAATGAAAATGATG+GGG | 0.641561 | 3_1:-65683656 | None:intergenic |
| GCACTTAATGAAGCCATCGT+CGG | 0.646144 | 3_1:+65686492 | Msa0368790:CDS |
| ATGATGGGGAGAGAAAAGAA+GGG | 0.646545 | 3_1:-65683642 | None:intergenic |
| TCATCCTATTACTGAGCGTG+AGG | 0.648329 | 3_1:+65685376 | Msa0368790:CDS |
| TTTCTTCTTCATACTCAGAG+AGG | 0.657884 | 3_1:+65684179 | Msa0368790:CDS |
| AGGAGGTGCCATAACGACGA+TGG | 0.659358 | 3_1:-65683716 | None:intergenic |
| ATCACATGCCAGAAACAAGA+GGG | 0.660956 | 3_1:+65686614 | Msa0368790:CDS |
| CTGCAATTTCATGCTCGGAG+GGG | 0.661590 | 3_1:+65687722 | Msa0368790:three_prime_UTR |
| CTTGCACACGAATTGATGCA+TGG | 0.666672 | 3_1:+65687188 | Msa0368790:CDS |
| AGTATGTGGAGGATGCAACA+AGG | 0.670083 | 3_1:+65685277 | Msa0368790:CDS |
| TCCGAGCATGAAATTGCAGG+AGG | 0.671178 | 3_1:-65687718 | None:intergenic |
| CCGTGCTAGAACTAGGAAGG+AGG | 0.672994 | 3_1:+65684648 | Msa0368790:CDS |
| GCAACCTGTAGACGAAAACA+TGG | 0.674646 | 3_1:+65684282 | Msa0368790:CDS |
| GGATCCAATAGAGGAAGGGG+TGG | 0.681667 | 3_1:+65684244 | Msa0368790:CDS |
| AAAGGTAAAGGAGCGCATGG+AGG | 0.686908 | 3_1:-65684897 | None:intergenic |
| TCGCATAACAGAGTATGTGG+AGG | 0.702407 | 3_1:+65685266 | Msa0368790:CDS |
| CTGTTTACCAAGGATCTAGG+CGG | 0.702697 | 3_1:-65684316 | None:intergenic |
| AAAATTTACCTGTATCCGCG+GGG | 0.764166 | 3_1:-65684924 | None:intergenic |
| ATATTGATATCTGATGAAGG+AGG | 0.767738 | 3_1:-65683733 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTCTTGTTTTTTATTTT+TGG | + | chr3_1:65683895-65683914 | Msa0368790:intron | 10.0% |
| !! | TTTATTTATGTATAAGTTAT+AGG | - | chr3_1:65683990-65684009 | None:intergenic | 10.0% |
| !!! | ATTTTCAAAATTATTATAGT+TGG | - | chr3_1:65684767-65684786 | None:intergenic | 10.0% |
| !! | CTAAATGATTACAAATAAAT+AGG | - | chr3_1:65685897-65685916 | None:intergenic | 15.0% |
| !! | AACAGAAAATCATAAATAAA+TGG | - | chr3_1:65686740-65686759 | None:intergenic | 15.0% |
| !! | GTATTAAATATTAATTACCT+CGG | - | chr3_1:65686881-65686900 | None:intergenic | 15.0% |
| !! | TAATATTTAATACACAACAA+CGG | + | chr3_1:65686888-65686907 | Msa0368790:intron | 15.0% |
| !! | TTTATAAATATAAACCTTTG+AGG | - | chr3_1:65687223-65687242 | None:intergenic | 15.0% |
| !! | ACCAAAAAATCTATACATAT+AGG | + | chr3_1:65683690-65683709 | Msa0368790:five_prime_UTR | 20.0% |
| !! | TAAATAGATATACATAAGGA+AGG | - | chr3_1:65683813-65683832 | None:intergenic | 20.0% |
| !! | AAAATTGCAACAACAAAAAA+GGG | - | chr3_1:65684141-65684160 | None:intergenic | 20.0% |
| !! | TTATATTTATTTCCATCTCA+AGG | + | chr3_1:65684442-65684461 | Msa0368790:intron | 20.0% |
| !! | TTCAATAAATCAATATCTGA+TGG | + | chr3_1:65685198-65685217 | Msa0368790:intron | 20.0% |
| !! | TTAAAACAATACTTGTGATA+TGG | - | chr3_1:65685652-65685671 | None:intergenic | 20.0% |
| !!! | ATATCACAAGTATTGTTTTA+AGG | + | chr3_1:65685651-65685670 | Msa0368790:intron | 20.0% |
| !! | AAGAAAAACTTACATAATGA+TGG | - | chr3_1:65685705-65685724 | None:intergenic | 20.0% |
| !! | TAGTTTAAGTCATTAAATGT+CGG | + | chr3_1:65685778-65685797 | Msa0368790:intron | 20.0% |
| !! | AATGTCATAAGAAAACTATT+TGG | - | chr3_1:65685833-65685852 | None:intergenic | 20.0% |
| !! | TTATTTCCATGATCTTAAAA+AGG | - | chr3_1:65686228-65686247 | None:intergenic | 20.0% |
| !!! | GTACTAAATTTTTTTCAAAG+TGG | - | chr3_1:65686951-65686970 | None:intergenic | 20.0% |
| !!! | ATCATTTTCTCAAAATTCAT+AGG | - | chr3_1:65686973-65686992 | None:intergenic | 20.0% |
| !! | TTATGTTTGTGATTATGTTA+AGG | + | chr3_1:65687109-65687128 | Msa0368790:intron | 20.0% |
| !! | AAGTGTTCTGATATATTTAT+GGG | + | chr3_1:65687141-65687160 | Msa0368790:intron | 20.0% |
| !! | AATCAAATCATGTAATACTA+AGG | - | chr3_1:65687274-65687293 | None:intergenic | 20.0% |
| ! | AAGAGAAAATGAAAATGATG+GGG | - | chr3_1:65683659-65683678 | None:intergenic | 25.0% |
| ! | CAAGAGAAAATGAAAATGAT+GGG | - | chr3_1:65683660-65683679 | None:intergenic | 25.0% |
| !!! | GCCTATATGTATAGATTTTT+TGG | - | chr3_1:65683694-65683713 | None:intergenic | 25.0% |
| ! | AGAATATTGATATCTGATGA+AGG | - | chr3_1:65683739-65683758 | None:intergenic | 25.0% |
| ! | AGAAAATACCATATATGCAA+GGG | - | chr3_1:65683768-65683787 | None:intergenic | 25.0% |
| ! | AAGAAAATACCATATATGCA+AGG | - | chr3_1:65683769-65683788 | None:intergenic | 25.0% |
| ! | ATACATAAGGAAGGAAAAAT+AGG | - | chr3_1:65683804-65683823 | None:intergenic | 25.0% |
| !! | GCTCTAAATAGATATACATA+AGG | - | chr3_1:65683817-65683836 | None:intergenic | 25.0% |
| !! | TATATCTATTTAGAGCTTCA+TGG | + | chr3_1:65683821-65683840 | Msa0368790:intron | 25.0% |
| ! | CAAAATTGCAACAACAAAAA+AGG | - | chr3_1:65684142-65684161 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTGTTGCAATTT+TGG | + | chr3_1:65684140-65684159 | Msa0368790:intron | 25.0% |
| !! | TTTGGCAAGATTTTCAAAAT+TGG | + | chr3_1:65684223-65684242 | Msa0368790:CDS | 25.0% |
| ! | TAATTGAATTAACCTTGAGA+TGG | - | chr3_1:65684457-65684476 | None:intergenic | 25.0% |
| !! | TTTTGAATTTTAGACTGTGT+AGG | + | chr3_1:65684538-65684557 | Msa0368790:intron | 25.0% |
| ! | ATTGTTTAGTACATTGATCT+AGG | - | chr3_1:65684606-65684625 | None:intergenic | 25.0% |
| ! | ACAATATTCTTGATGCTAAT+AGG | + | chr3_1:65684621-65684640 | Msa0368790:intron | 25.0% |
| !! | TTATTTGCATTTTCTCGTTA+AGG | + | chr3_1:65684801-65684820 | Msa0368790:intron | 25.0% |
| ! | AATCTTGACTTATATGAAGT+TGG | - | chr3_1:65684994-65685013 | None:intergenic | 25.0% |
| ! | AAAACACTGTTCAAATTCAA+AGG | - | chr3_1:65685096-65685115 | None:intergenic | 25.0% |
| ! | ATACTCTATGGTAATTGTTT+GGG | + | chr3_1:65685302-65685321 | Msa0368790:CDS | 25.0% |
| !! | TGTAAATAGCATGATTTTGT+CGG | - | chr3_1:65685522-65685541 | None:intergenic | 25.0% |
| ! | TTGTGAAAAAAGAAATGGAA+GGG | - | chr3_1:65685729-65685748 | None:intergenic | 25.0% |
| ! | ATTGTGAAAAAAGAAATGGA+AGG | - | chr3_1:65685730-65685749 | None:intergenic | 25.0% |
| ! | AAGAAAACTAATAACCAAGT+AGG | - | chr3_1:65685755-65685774 | None:intergenic | 25.0% |
| ! | CATTGATCAATCATATGATA+TGG | + | chr3_1:65685942-65685961 | Msa0368790:intron | 25.0% |
| !!! | CTAGTTTTCTGATATATCAA+TGG | - | chr3_1:65685980-65685999 | None:intergenic | 25.0% |
| !!! | AATATTTTTGGTTCCAATAG+GGG | - | chr3_1:65686127-65686146 | None:intergenic | 25.0% |
| !!! | CAATATTTTTGGTTCCAATA+GGG | - | chr3_1:65686128-65686147 | None:intergenic | 25.0% |
| !!! | ACAATATTTTTGGTTCCAAT+AGG | - | chr3_1:65686129-65686148 | None:intergenic | 25.0% |
| !!! | TTATCTCCTTTTTAAGATCA+TGG | + | chr3_1:65686219-65686238 | Msa0368790:intron | 25.0% |
| ! | ATACATAGATGGTCAAAAAT+TGG | + | chr3_1:65686767-65686786 | Msa0368790:CDS | 25.0% |
| !! | CATTTTCTAATCAACTTTTG+AGG | - | chr3_1:65686824-65686843 | None:intergenic | 25.0% |
| ! | GATTAGAAAATGTGAAGTTA+CGG | + | chr3_1:65686832-65686851 | Msa0368790:CDS | 25.0% |
| ! | AGTTTCGATAACAATTTAGA+TGG | + | chr3_1:65686997-65687016 | Msa0368790:intron | 25.0% |
| !! | ATTAACCATGATTTTGAATG+CGG | + | chr3_1:65687051-65687070 | Msa0368790:intron | 25.0% |
| !! | AATTTTACACCTGAAAATTG+TGG | - | chr3_1:65687078-65687097 | None:intergenic | 25.0% |
| ! | CAAGTGTTCTGATATATTTA+TGG | + | chr3_1:65687140-65687159 | Msa0368790:intron | 25.0% |
| ! | TCACTTATCTTAATCTAATC+AGG | + | chr3_1:65687300-65687319 | Msa0368790:intron | 25.0% |
| ! | ATCCAAAGTTGAGAATAAAT+TGG | + | chr3_1:65687488-65687507 | Msa0368790:CDS | 25.0% |
| ! | TCCAAAGTTGAGAATAAATT+GGG | + | chr3_1:65687489-65687508 | Msa0368790:CDS | 25.0% |
| ! | AATGCAGCTGTTAATAAATA+CGG | + | chr3_1:65687579-65687598 | Msa0368790:CDS | 25.0% |
| ! | AGTAGTAGTGAATTTATACT+TGG | - | chr3_1:65687686-65687705 | None:intergenic | 25.0% |
| GCAAGAGAAAATGAAAATGA+TGG | - | chr3_1:65683661-65683680 | None:intergenic | 30.0% | |
| ATATTGATATCTGATGAAGG+AGG | - | chr3_1:65683736-65683755 | None:intergenic | 30.0% | |
| AGGAAGGAAAAATAGGAAAA+AGG | - | chr3_1:65683797-65683816 | None:intergenic | 30.0% | |
| CAAATTTCGCATATCAACAA+GGG | - | chr3_1:65684086-65684105 | None:intergenic | 30.0% | |
| TCAAATTTCGCATATCAACA+AGG | - | chr3_1:65684087-65684106 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGTTGCAATTTTGG+TGG | + | chr3_1:65684143-65684162 | Msa0368790:intron | 30.0% |
| !!! | TTTGTTGTTGCAATTTTGGT+GGG | + | chr3_1:65684144-65684163 | Msa0368790:intron | 30.0% |
| !!! | TCTGGTTTTATGAAATGGTT+TGG | + | chr3_1:65684205-65684224 | Msa0368790:CDS | 30.0% |
| TTCAAAATTGGATCCAATAG+AGG | + | chr3_1:65684235-65684254 | Msa0368790:CDS | 30.0% | |
| TTTCTCGTTAAGGATATAGA+TGG | + | chr3_1:65684811-65684830 | Msa0368790:intron | 30.0% | |
| ! | ACTGATGATGATTATGCAAA+AGG | + | chr3_1:65684843-65684862 | Msa0368790:CDS | 30.0% |
| ! | GTACTGATCAAAATTAGAAG+AGG | - | chr3_1:65684950-65684969 | None:intergenic | 30.0% |
| GATACTCTATGGTAATTGTT+TGG | + | chr3_1:65685301-65685320 | Msa0368790:CDS | 30.0% | |
| TGTGAAAAAAGAAATGGAAG+GGG | - | chr3_1:65685728-65685747 | None:intergenic | 30.0% | |
| GGACATTGTGAAAAAAGAAA+TGG | - | chr3_1:65685734-65685753 | None:intergenic | 30.0% | |
| !!! | TTTTTTCACAATGTCCTACT+TGG | + | chr3_1:65685738-65685757 | Msa0368790:intron | 30.0% |
| AATTGAAGTCGTCGTTAAAA+TGG | + | chr3_1:65685865-65685884 | Msa0368790:intron | 30.0% | |
| ATCAAACCAGAACCATTTAT+AGG | - | chr3_1:65686089-65686108 | None:intergenic | 30.0% | |
| ! | CATGAGATGGACAATATTTT+TGG | - | chr3_1:65686139-65686158 | None:intergenic | 30.0% |
| GTATTATCATGTTCATGAGA+TGG | - | chr3_1:65686152-65686171 | None:intergenic | 30.0% | |
| !! | TATTTTTGATTACCTTCTGC+TGG | + | chr3_1:65686286-65686305 | Msa0368790:intron | 30.0% |
| AGATACTTTAGATTGGATGA+TGG | + | chr3_1:65686324-65686343 | Msa0368790:CDS | 30.0% | |
| TCTCTAATAGCATGATAAAG+AGG | - | chr3_1:65686408-65686427 | None:intergenic | 30.0% | |
| TATGACTGAAACACAAAGAA+TGG | - | chr3_1:65686541-65686560 | None:intergenic | 30.0% | |
| ATTCTTTGTGTTTCAGTCAT+AGG | + | chr3_1:65686540-65686559 | Msa0368790:intron | 30.0% | |
| AAGCAATTAGCAAGAGTAAA+AGG | - | chr3_1:65686575-65686594 | None:intergenic | 30.0% | |
| ! | TTTTACTCTTGCTAATTGCT+TGG | + | chr3_1:65686574-65686593 | Msa0368790:intron | 30.0% |
| !! | AGGTATTGAAAATCATACAC+TGG | - | chr3_1:65686668-65686687 | None:intergenic | 30.0% |
| TCTGATAAAACAAAAGCAGA+AGG | - | chr3_1:65686688-65686707 | None:intergenic | 30.0% | |
| !! | TGTTGTTTCAGATACATAGA+TGG | + | chr3_1:65686756-65686775 | Msa0368790:intron | 30.0% |
| ACCCAATTTATTCTCAACTT+TGG | - | chr3_1:65687493-65687512 | None:intergenic | 30.0% | |
| GAAGTTGTTCTTATTACAGT+GGG | - | chr3_1:65687647-65687666 | None:intergenic | 30.0% | |
| AGAAGTTGTTCTTATTACAG+TGG | - | chr3_1:65687648-65687667 | None:intergenic | 30.0% | |
| AGTTCTCTAATATCGCATCA+CGG | - | chr3_1:65683940-65683959 | None:intergenic | 35.0% | |
| TTTCTTCTTCATACTCAGAG+AGG | + | chr3_1:65684179-65684198 | Msa0368790:CDS | 35.0% | |
| !!! | GGAAGTCTGGTTTTATGAAA+TGG | + | chr3_1:65684200-65684219 | Msa0368790:CDS | 35.0% |
| AAATTGGATCCAATAGAGGA+AGG | + | chr3_1:65684239-65684258 | Msa0368790:CDS | 35.0% | |
| AATTGGATCCAATAGAGGAA+GGG | + | chr3_1:65684240-65684259 | Msa0368790:CDS | 35.0% | |
| AAAGCAGATAGTTGAGTCAT+TGG | - | chr3_1:65684344-65684363 | None:intergenic | 35.0% | |
| GAAGATTTAAAGATACCAGC+AGG | + | chr3_1:65684709-65684728 | Msa0368790:CDS | 35.0% | |
| ATTTAAAGATACCAGCAGGT+AGG | + | chr3_1:65684713-65684732 | Msa0368790:intron | 35.0% | |
| TTAAGGATATAGATGGCGAA+CGG | + | chr3_1:65684818-65684837 | Msa0368790:intron | 35.0% | |
| TTGACTTATATGAAGTTGGC+TGG | - | chr3_1:65684990-65685009 | None:intergenic | 35.0% | |
| ! | ATTTTCATCCAGACTGCTTT+CGG | + | chr3_1:65685339-65685358 | Msa0368790:CDS | 35.0% |
| ! | CCTCTTTTATCCATCTCTTA+CGG | + | chr3_1:65685582-65685601 | Msa0368790:intron | 35.0% |
| CTTGGATCAACAGAAACAAA+AGG | - | chr3_1:65685608-65685627 | None:intergenic | 35.0% | |
| ! | TGATCCAAGTTTTCTTTGTC+AGG | + | chr3_1:65685619-65685638 | Msa0368790:intron | 35.0% |
| ! | GATCCAAGTTTTCTTTGTCA+GGG | + | chr3_1:65685620-65685639 | Msa0368790:intron | 35.0% |
| TGATGGCAAACTTCACATTT+AGG | - | chr3_1:65685688-65685707 | None:intergenic | 35.0% | |
| CACTTGCAGATACCTATAAA+TGG | + | chr3_1:65686074-65686093 | Msa0368790:intron | 35.0% | |
| CAGATACCTATAAATGGTTC+TGG | + | chr3_1:65686080-65686099 | Msa0368790:intron | 35.0% | |
| !! | GTTCTGGTTTGATTGAGTAT+AGG | + | chr3_1:65686096-65686115 | Msa0368790:CDS | 35.0% |
| TTGTAGCTGTGAAAGATTAG+AGG | + | chr3_1:65686181-65686200 | Msa0368790:CDS | 35.0% | |
| !! | ACTTTAGATTGGATGATGGA+CGG | + | chr3_1:65686328-65686347 | Msa0368790:CDS | 35.0% |
| !! | GATTTTGTGCTTTGAATGCA+TGG | + | chr3_1:65686350-65686369 | Msa0368790:CDS | 35.0% |
| GAATCTGCTATAACAGATAC+CGG | + | chr3_1:65686372-65686391 | Msa0368790:CDS | 35.0% | |
| GCTATTAGAGACTATTACGA+AGG | + | chr3_1:65686417-65686436 | Msa0368790:CDS | 35.0% | |
| ACTGAAACACAAAGAATGGA+TGG | - | chr3_1:65686537-65686556 | None:intergenic | 35.0% | |
| TAATTGCTTGGTTTCTACCA+GGG | + | chr3_1:65686586-65686605 | Msa0368790:intron | 35.0% | |
| CATAGATGGTCAAAAATTGG+AGG | + | chr3_1:65686770-65686789 | Msa0368790:CDS | 35.0% | |
| ! | ATTGGAGGTCATCGATTAAT+AGG | + | chr3_1:65686785-65686804 | Msa0368790:CDS | 35.0% |
| ! | TTGGAGGTCATCGATTAATA+GGG | + | chr3_1:65686786-65686805 | Msa0368790:CDS | 35.0% |
| CAAAGTGGATCATCTGTAAT+TGG | - | chr3_1:65686936-65686955 | None:intergenic | 35.0% | |
| TCTGATATATTTATGGGTGC+AGG | + | chr3_1:65687147-65687166 | Msa0368790:intron | 35.0% | |
| ATAAGCTGGAGAAGAATCAT+TGG | - | chr3_1:65687538-65687557 | None:intergenic | 35.0% | |
| AATGATTCTTCTCCAGCTTA+TGG | + | chr3_1:65687537-65687556 | Msa0368790:CDS | 35.0% | |
| ! | CTTCTCTGAGAAGTTTGAAT+TGG | + | chr3_1:65687663-65687682 | Msa0368790:three_prime_UTR | 35.0% |
| ! | ATGATGGGGAGAGAAAAGAA+GGG | - | chr3_1:65683645-65683664 | None:intergenic | 40.0% |
| ! | AATGATGGGGAGAGAAAAGA+AGG | - | chr3_1:65683646-65683665 | None:intergenic | 40.0% |
| CTTTCACACCCTTGCATATA+TGG | + | chr3_1:65683757-65683776 | Msa0368790:CDS | 40.0% | |
| ATTGGATCCAATAGAGGAAG+GGG | + | chr3_1:65684241-65684260 | Msa0368790:CDS | 40.0% | |
| GTTCTGTTTACCAAGGATCT+AGG | - | chr3_1:65684322-65684341 | None:intergenic | 40.0% | |
| !! | GTCATTGGTTCTGTTTACCA+AGG | - | chr3_1:65684329-65684348 | None:intergenic | 40.0% |
| TGTTGTTGCACATGTCAAGT+TGG | + | chr3_1:65684413-65684432 | Msa0368790:intron | 40.0% | |
| CGAACTGTTTGCATTTCGAA+CGG | - | chr3_1:65684504-65684523 | None:intergenic | 40.0% | |
| CGTTCGAAATGCAAACAGTT+CGG | + | chr3_1:65684502-65684521 | Msa0368790:intron | 40.0% | |
| GAAAATTAGTACCTACCTGC+TGG | - | chr3_1:65684727-65684746 | None:intergenic | 40.0% | |
| TAAGGATATAGATGGCGAAC+GGG | + | chr3_1:65684819-65684838 | Msa0368790:intron | 40.0% | |
| TGATTATGCAAAAGGACTCC+AGG | + | chr3_1:65684851-65684870 | Msa0368790:CDS | 40.0% | |
| ! | TAAAAAGGTAAAGGAGCGCA+TGG | - | chr3_1:65684903-65684922 | None:intergenic | 40.0% |
| AAAATTTACCTGTATCCGCG+GGG | - | chr3_1:65684927-65684946 | None:intergenic | 40.0% | |
| GAAAATTTACCTGTATCCGC+GGG | - | chr3_1:65684928-65684947 | None:intergenic | 40.0% | |
| GGAAAATTTACCTGTATCCG+CGG | - | chr3_1:65684929-65684948 | None:intergenic | 40.0% | |
| TGCAACAAGGAGATACTCTA+TGG | + | chr3_1:65685290-65685309 | Msa0368790:CDS | 40.0% | |
| AATACCTCACGCTCAGTAAT+AGG | - | chr3_1:65685383-65685402 | None:intergenic | 40.0% | |
| CCGTAAGAGATGGATAAAAG+AGG | - | chr3_1:65685585-65685604 | None:intergenic | 40.0% | |
| AAACAAAAGGCCGTAAGAGA+TGG | - | chr3_1:65685595-65685614 | None:intergenic | 40.0% | |
| CTTCCCTGACAAAGAAAACT+TGG | - | chr3_1:65685626-65685645 | None:intergenic | 40.0% | |
| GGCAAACTTCACATTTAGGA+TGG | - | chr3_1:65685684-65685703 | None:intergenic | 40.0% | |
| GGGCGAAAGATACTTTAGAT+TGG | + | chr3_1:65686317-65686336 | Msa0368790:CDS | 40.0% | |
| ATAAAGAGGCTGACATTCAC+CGG | - | chr3_1:65686394-65686413 | None:intergenic | 40.0% | |
| ! | TCTCTTCCAACTAGAAGCAT+GGG | - | chr3_1:65686471-65686490 | None:intergenic | 40.0% |
| TTCTCTTCCAACTAGAAGCA+TGG | - | chr3_1:65686472-65686491 | None:intergenic | 40.0% | |
| CTAATTGCTTGGTTTCTACC+AGG | + | chr3_1:65686585-65686604 | Msa0368790:intron | 40.0% | |
| ATCACATGCCAGAAACAAGA+GGG | + | chr3_1:65686614-65686633 | Msa0368790:CDS | 40.0% | |
| TGACAGTCTGTTCTTCTGAA+AGG | - | chr3_1:65686645-65686664 | None:intergenic | 40.0% | |
| ACGGCTATTCTTGTTCTCTA+TGG | + | chr3_1:65686851-65686870 | Msa0368790:CDS | 40.0% | |
| TCATGGTTAATTGCGTTGAG+CGG | - | chr3_1:65687042-65687061 | None:intergenic | 40.0% | |
| GTCAGGTTCTTTCTTACATG+TGG | + | chr3_1:65687361-65687380 | Msa0368790:CDS | 40.0% | |
| CTTGAAGCAGAAGTTATGTC+AGG | + | chr3_1:65687384-65687403 | Msa0368790:CDS | 40.0% | |
| GAGAAGAATCATTGGCAATC+TGG | - | chr3_1:65687530-65687549 | None:intergenic | 40.0% | |
| CTTGACCATATTCGTTTGAC+TGG | + | chr3_1:65687615-65687634 | Msa0368790:CDS | 40.0% | |
| ACTGACCAGTCAAACGAATA+TGG | - | chr3_1:65687623-65687642 | None:intergenic | 40.0% | |
| ATAGGCTTCCATCGTCGTTA+TGG | + | chr3_1:65683708-65683727 | Msa0368790:exon | 45.0% | |
| !! | TTGCAATTTTGGTGGGAAGC+AGG | + | chr3_1:65684151-65684170 | Msa0368790:intron | 45.0% |
| !! | TGCAATTTTGGTGGGAAGCA+GGG | + | chr3_1:65684152-65684171 | Msa0368790:intron | 45.0% |
| TCATACTCAGAGAGGAAGTC+TGG | + | chr3_1:65684187-65684206 | Msa0368790:CDS | 45.0% | |
| GCAACCTGTAGACGAAAACA+TGG | + | chr3_1:65684282-65684301 | Msa0368790:CDS | 45.0% | |
| ! | CAAGCCATGTTTTCGTCTAC+AGG | - | chr3_1:65684289-65684308 | None:intergenic | 45.0% |
| CTGTAGACGAAAACATGGCT+TGG | + | chr3_1:65684287-65684306 | Msa0368790:CDS | 45.0% | |
| CTGTTTACCAAGGATCTAGG+CGG | - | chr3_1:65684319-65684338 | None:intergenic | 45.0% | |
| AGGATAACCGTGCTAGAACT+AGG | + | chr3_1:65684641-65684660 | Msa0368790:intron | 45.0% | |
| TAACCGTGCTAGAACTAGGA+AGG | + | chr3_1:65684645-65684664 | Msa0368790:CDS | 45.0% | |
| TAGAACTAGGAAGGAGGAAG+AGG | + | chr3_1:65684654-65684673 | Msa0368790:CDS | 45.0% | |
| ! | CCTTTACCTTTTTATCCCCG+CGG | + | chr3_1:65684909-65684928 | Msa0368790:CDS | 45.0% |
| CCACATACTCTGTTATGCGA+TGG | - | chr3_1:65685266-65685285 | None:intergenic | 45.0% | |
| CCATCGCATAACAGAGTATG+TGG | + | chr3_1:65685263-65685282 | Msa0368790:CDS | 45.0% | |
| TCGCATAACAGAGTATGTGG+AGG | + | chr3_1:65685266-65685285 | Msa0368790:CDS | 45.0% | |
| AGTATGTGGAGGATGCAACA+AGG | + | chr3_1:65685277-65685296 | Msa0368790:CDS | 45.0% | |
| TCATCCTATTACTGAGCGTG+AGG | + | chr3_1:65685376-65685395 | Msa0368790:CDS | 45.0% | |
| GCCTCAACACACATTTACAC+AGG | + | chr3_1:65685456-65685475 | Msa0368790:intron | 45.0% | |
| GCCTGTGTAAATGTGTGTTG+AGG | - | chr3_1:65685460-65685479 | None:intergenic | 45.0% | |
| ! | AGTATAGGTGTCACCCCTAT+TGG | + | chr3_1:65686111-65686130 | Msa0368790:CDS | 45.0% |
| TTACCTTCTGCTGGAAGTCT+CGG | + | chr3_1:65686295-65686314 | Msa0368790:intron | 45.0% | |
| CAAATCCCCATGCTTCTAGT+TGG | + | chr3_1:65686462-65686481 | Msa0368790:CDS | 45.0% | |
| ! | CTCTTCCAACTAGAAGCATG+GGG | - | chr3_1:65686470-65686489 | None:intergenic | 45.0% |
| GCACTTAATGAAGCCATCGT+CGG | + | chr3_1:65686492-65686511 | Msa0368790:CDS | 45.0% | |
| TACATTCTTCTCTCCGACGA+TGG | - | chr3_1:65686508-65686527 | None:intergenic | 45.0% | |
| !! | CTCTTGTTTCTGGCATGTGA+TGG | - | chr3_1:65686615-65686634 | None:intergenic | 45.0% |
| CATCACATGCCAGAAACAAG+AGG | + | chr3_1:65686613-65686632 | Msa0368790:CDS | 45.0% | |
| ! | AGGCATAACCCTCTTGTTTC+TGG | - | chr3_1:65686625-65686644 | None:intergenic | 45.0% |
| TTGTTCTCTATGGTCTTCCG+AGG | + | chr3_1:65686861-65686880 | Msa0368790:CDS | 45.0% | |
| GTGGTCCGCATTCAAAATCA+TGG | - | chr3_1:65687059-65687078 | None:intergenic | 45.0% | |
| ! | GAATGCGGACCACAATTTTC+AGG | + | chr3_1:65687066-65687085 | Msa0368790:intron | 45.0% |
| CATGCATCAATTCGTGTGCA+AGG | - | chr3_1:65687190-65687209 | None:intergenic | 45.0% | |
| CTTGCACACGAATTGATGCA+TGG | + | chr3_1:65687188-65687207 | Msa0368790:CDS | 45.0% | |
| CACACGAATTGATGCATGGT+TGG | + | chr3_1:65687192-65687211 | Msa0368790:CDS | 45.0% | |
| GGTAGAAGAAGAAGAAGCTG+CGG | - | chr3_1:65687436-65687455 | None:intergenic | 45.0% | |
| TTTCTTTGACGAGTAGGAGG+CGG | - | chr3_1:65687460-65687479 | None:intergenic | 45.0% | |
| GATTCTTCTCCAGCTTATGG+CGG | + | chr3_1:65687540-65687559 | Msa0368790:CDS | 45.0% | |
| TCCTCCTGCAATTTCATGCT+CGG | + | chr3_1:65687717-65687736 | Msa0368790:three_prime_UTR | 45.0% | |
| !! | GCAATTTTGGTGGGAAGCAG+GGG | + | chr3_1:65684153-65684172 | Msa0368790:intron | 50.0% |
| !! | CCTCCTTCCTAGTTCTAGCA+CGG | - | chr3_1:65684651-65684670 | None:intergenic | 50.0% |
| ! | AAGGTAAAGGAGCGCATGGA+GGG | - | chr3_1:65684899-65684918 | None:intergenic | 50.0% |
| ! | AAAGGTAAAGGAGCGCATGG+AGG | - | chr3_1:65684900-65684919 | None:intergenic | 50.0% |
| CCGCGGGGATAAAAAGGTAA+AGG | - | chr3_1:65684912-65684931 | None:intergenic | 50.0% | |
| CTGTATCCGCGGGGATAAAA+AGG | - | chr3_1:65684918-65684937 | None:intergenic | 50.0% | |
| ! | CTTTTTATCCCCGCGGATAC+AGG | + | chr3_1:65684916-65684935 | Msa0368790:CDS | 50.0% |
| TACCTTCTGCTGGAAGTCTC+GGG | + | chr3_1:65686296-65686315 | Msa0368790:intron | 50.0% | |
| GGTTAATTGCGTTGAGCGGA+TGG | - | chr3_1:65687038-65687057 | None:intergenic | 50.0% | |
| TATGGGTGCAGGTTACTGAC+AGG | + | chr3_1:65687158-65687177 | Msa0368790:intron | 50.0% | |
| ! | CATGGTTGGTTACGCCTCAA+AGG | + | chr3_1:65687206-65687225 | Msa0368790:CDS | 50.0% |
| ! | AGTCGAGGAAGGTATGTGTC+AGG | + | chr3_1:65687344-65687363 | Msa0368790:CDS | 50.0% |
| GCCTCCTACTCGTCAAAGAA+AGG | + | chr3_1:65687459-65687478 | Msa0368790:CDS | 50.0% | |
| GCCTTTCTTTGACGAGTAGG+AGG | - | chr3_1:65687463-65687482 | None:intergenic | 50.0% | |
| TCCGAGCATGAAATTGCAGG+AGG | - | chr3_1:65687721-65687740 | None:intergenic | 50.0% | |
| TCCTGCAATTTCATGCTCGG+AGG | + | chr3_1:65687720-65687739 | Msa0368790:three_prime_UTR | 50.0% | |
| CCTGCAATTTCATGCTCGGA+GGG | + | chr3_1:65687721-65687740 | Msa0368790:three_prime_UTR | 50.0% | |
| CTGCAATTTCATGCTCGGAG+GGG | + | chr3_1:65687722-65687741 | Msa0368790:three_prime_UTR | 50.0% | |
| AATTTCATGCTCGGAGGGGA+AGG | + | chr3_1:65687726-65687745 | Msa0368790:three_prime_UTR | 50.0% | |
| !! | AGGAGGTGCCATAACGACGA+TGG | - | chr3_1:65683719-65683738 | None:intergenic | 55.0% |
| GGATCCAATAGAGGAAGGGG+TGG | + | chr3_1:65684244-65684263 | Msa0368790:CDS | 55.0% | |
| TCCAATAGAGGAAGGGGTGG+CGG | + | chr3_1:65684247-65684266 | Msa0368790:CDS | 55.0% | |
| CCGTGCTAGAACTAGGAAGG+AGG | + | chr3_1:65684648-65684667 | Msa0368790:CDS | 55.0% | |
| GAGATGAGTGCATGCGATCC+TGG | - | chr3_1:65684872-65684891 | None:intergenic | 55.0% | |
| GAGTGACACCGAAAGCAGTC+TGG | - | chr3_1:65685350-65685369 | None:intergenic | 55.0% | |
| ACCTTCTGCTGGAAGTCTCG+GGG | + | chr3_1:65686297-65686316 | Msa0368790:intron | 55.0% | |
| ! | CTGGCATGTGATGGAAACCC+TGG | - | chr3_1:65686606-65686625 | None:intergenic | 55.0% |
| CGACTGCAGGATCAAGGTTG+CGG | - | chr3_1:65687329-65687348 | None:intergenic | 55.0% | |
| CAACCTTGATCCTGCAGTCG+AGG | + | chr3_1:65687329-65687348 | Msa0368790:CDS | 55.0% | |
| CTTCCTCGACTGCAGGATCA+AGG | - | chr3_1:65687335-65687354 | None:intergenic | 55.0% | |
| CTTGATCCTGCAGTCGAGGA+AGG | + | chr3_1:65687333-65687352 | Msa0368790:CDS | 55.0% | |
| CACATACCTTCCTCGACTGC+AGG | - | chr3_1:65687342-65687361 | None:intergenic | 55.0% | |
| GAAGCTGCGGCTGATGTTGA+TGG | - | chr3_1:65687423-65687442 | None:intergenic | 55.0% | |
| CGCGCCTTTCTTTGACGAGT+AGG | - | chr3_1:65687466-65687485 | None:intergenic | 55.0% | |
| TCTTCTCCAGCTTATGGCGG+AGG | + | chr3_1:65687543-65687562 | Msa0368790:CDS | 55.0% | |
| CTAAAGCCTCCGCCATAAGC+TGG | - | chr3_1:65687552-65687571 | None:intergenic | 55.0% | |
| ! | CAGCTTATGGCGGAGGCTTT+AGG | + | chr3_1:65687550-65687569 | Msa0368790:CDS | 55.0% |
| CCCTCCGAGCATGAAATTGC+AGG | - | chr3_1:65687724-65687743 | None:intergenic | 55.0% | |
| ACCGCCACCCCTTCCTCTAT+TGG | - | chr3_1:65684251-65684270 | None:intergenic | 60.0% | |
| CTTTGACGAGTAGGAGGCGG+AGG | - | chr3_1:65687457-65687476 | None:intergenic | 60.0% | |
| GCGAGCTCCGCCTAGATCCT+TGG | + | chr3_1:65684309-65684328 | Msa0368790:CDS | 65.0% | |
| GCCCCGAGACTTCCAGCAGA+AGG | - | chr3_1:65686301-65686320 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 65683631 | 65687817 | 65683631 | ID=Msa0368790;Name=Msa0368790 |
| chr3_1 | mRNA | 65683631 | 65687817 | 65683631 | ID=Msa0368790-mRNA-1;Parent=Msa0368790;Name=Msa0368790-mRNA-1;_AED=0.17;_eAED=0.17;_QI=96|0.9|1|1|1|1|11|164|484 |
| chr3_1 | exon | 65683631 | 65683778 | 65683631 | ID=Msa0368790-mRNA-1:exon:13197;Parent=Msa0368790-mRNA-1 |
| chr3_1 | exon | 65684173 | 65684330 | 65684173 | ID=Msa0368790-mRNA-1:exon:13198;Parent=Msa0368790-mRNA-1 |
| chr3_1 | exon | 65684643 | 65684730 | 65684643 | ID=Msa0368790-mRNA-1:exon:13199;Parent=Msa0368790-mRNA-1 |
| chr3_1 | exon | 65684823 | 65684937 | 65684823 | ID=Msa0368790-mRNA-1:exon:13200;Parent=Msa0368790-mRNA-1 |
| chr3_1 | exon | 65685259 | 65685397 | 65685259 | ID=Msa0368790-mRNA-1:exon:13201;Parent=Msa0368790-mRNA-1 |
| chr3_1 | exon | 65686083 | 65686202 | 65686083 | ID=Msa0368790-mRNA-1:exon:13202;Parent=Msa0368790-mRNA-1 |
| chr3_1 | exon | 65686312 | 65686524 | 65686312 | ID=Msa0368790-mRNA-1:exon:13203;Parent=Msa0368790-mRNA-1 |
| chr3_1 | exon | 65686607 | 65686669 | 65686607 | ID=Msa0368790-mRNA-1:exon:13204;Parent=Msa0368790-mRNA-1 |
| chr3_1 | exon | 65686767 | 65686882 | 65686767 | ID=Msa0368790-mRNA-1:exon:13205;Parent=Msa0368790-mRNA-1 |
| chr3_1 | exon | 65687169 | 65687227 | 65687169 | ID=Msa0368790-mRNA-1:exon:13206;Parent=Msa0368790-mRNA-1 |
| chr3_1 | exon | 65687322 | 65687817 | 65687322 | ID=Msa0368790-mRNA-1:exon:13207;Parent=Msa0368790-mRNA-1 |
| chr3_1 | five_prime_UTR | 65683631 | 65683726 | 65683631 | ID=Msa0368790-mRNA-1:five_prime_utr;Parent=Msa0368790-mRNA-1 |
| chr3_1 | CDS | 65683727 | 65683778 | 65683727 | ID=Msa0368790-mRNA-1:cds;Parent=Msa0368790-mRNA-1 |
| chr3_1 | CDS | 65684173 | 65684330 | 65684173 | ID=Msa0368790-mRNA-1:cds;Parent=Msa0368790-mRNA-1 |
| chr3_1 | CDS | 65684643 | 65684730 | 65684643 | ID=Msa0368790-mRNA-1:cds;Parent=Msa0368790-mRNA-1 |
| chr3_1 | CDS | 65684823 | 65684937 | 65684823 | ID=Msa0368790-mRNA-1:cds;Parent=Msa0368790-mRNA-1 |
| chr3_1 | CDS | 65685259 | 65685397 | 65685259 | ID=Msa0368790-mRNA-1:cds;Parent=Msa0368790-mRNA-1 |
| chr3_1 | CDS | 65686083 | 65686202 | 65686083 | ID=Msa0368790-mRNA-1:cds;Parent=Msa0368790-mRNA-1 |
| chr3_1 | CDS | 65686312 | 65686524 | 65686312 | ID=Msa0368790-mRNA-1:cds;Parent=Msa0368790-mRNA-1 |
| chr3_1 | CDS | 65686607 | 65686669 | 65686607 | ID=Msa0368790-mRNA-1:cds;Parent=Msa0368790-mRNA-1 |
| chr3_1 | CDS | 65686767 | 65686882 | 65686767 | ID=Msa0368790-mRNA-1:cds;Parent=Msa0368790-mRNA-1 |
| chr3_1 | CDS | 65687169 | 65687227 | 65687169 | ID=Msa0368790-mRNA-1:cds;Parent=Msa0368790-mRNA-1 |
| chr3_1 | CDS | 65687322 | 65687653 | 65687322 | ID=Msa0368790-mRNA-1:cds;Parent=Msa0368790-mRNA-1 |
| chr3_1 | three_prime_UTR | 65687654 | 65687817 | 65687654 | ID=Msa0368790-mRNA-1:three_prime_utr;Parent=Msa0368790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
