Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064440 | XP_013467009.1 | 96.613 | 561 | 17 | 2 | 1 | 560 | 1 | 560 | 0.0 | 1110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064440 | A0A072VG87 | 96.613 | 561 | 17 | 2 | 1 | 560 | 1 | 560 | 0.0 | 1110 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064440 | Msa0099090 | 0.806803 | 6.889538e-50 | -8.615850e-47 |
| Msa0064440 | Msa0117300 | 0.801337 | 9.441876e-49 | -8.615850e-47 |
| Msa0064440 | Msa0120310 | 0.808218 | 3.450712e-50 | -8.615850e-47 |
| Msa0064440 | Msa0211520 | 0.813093 | 3.046812e-51 | -8.615850e-47 |
| Msa0064440 | Msa0221940 | 0.808448 | 3.081790e-50 | -8.615850e-47 |
| Msa0064440 | Msa0226580 | 0.822686 | 2.074513e-53 | -8.615850e-47 |
| Msa0064440 | Msa0251140 | 0.815835 | 7.540247e-52 | -8.615850e-47 |
| Msa0064440 | Msa0251790 | 0.805923 | 1.055929e-49 | -8.615850e-47 |
| Msa0064440 | Msa0290850 | 0.810948 | 8.943040e-51 | -8.615850e-47 |
| Msa0064440 | Msa0328840 | 0.810167 | 1.318824e-50 | -8.615850e-47 |
| Msa0064440 | Msa0343200 | 0.832288 | 1.029776e-55 | -8.615850e-47 |
| Msa0064440 | Msa0365360 | 0.819446 | 1.156740e-52 | -8.615850e-47 |
| Msa0064440 | Msa0387170 | 0.821921 | 3.121241e-53 | -8.615850e-47 |
| Msa0064440 | Msa0389570 | 0.822735 | 2.020706e-53 | -8.615850e-47 |
| Msa0064440 | Msa0486210 | 0.817653 | 2.949565e-52 | -8.615850e-47 |
| Msa0064440 | Msa0508330 | 0.814143 | 1.790242e-51 | -8.615850e-47 |
| Msa0064440 | Msa0525940 | 0.814137 | 1.795981e-51 | -8.615850e-47 |
| Msa0064440 | Msa0535020 | 0.802134 | 6.481173e-49 | -8.615850e-47 |
| Msa0064440 | Msa0535050 | 0.806915 | 6.522901e-50 | -8.615850e-47 |
| Msa0064440 | Msa0540120 | 0.837545 | 4.878532e-57 | -8.615850e-47 |
| Msa0064440 | Msa0549550 | 0.822370 | 2.457001e-53 | -8.615850e-47 |
| Msa0064440 | Msa0553570 | 0.815661 | 8.247727e-52 | -8.615850e-47 |
| Msa0064440 | Msa0555510 | 0.821396 | 4.128605e-53 | -8.615850e-47 |
| Msa0064440 | Msa0563230 | 0.834185 | 3.469751e-56 | -8.615850e-47 |
| Msa0064440 | Msa0604890 | 0.808407 | 3.144322e-50 | -8.615850e-47 |
| Msa0064440 | Msa0610850 | 0.811427 | 7.040222e-51 | -8.615850e-47 |
| Msa0064440 | Msa0617470 | 0.828239 | 1.004257e-54 | -8.615850e-47 |
| Msa0064440 | Msa0646180 | 0.810878 | 9.257669e-51 | -8.615850e-47 |
| Msa0064440 | Msa0649530 | 0.806907 | 6.549764e-50 | -8.615850e-47 |
| Msa0064440 | Msa0664110 | 0.831871 | 1.305579e-55 | -8.615850e-47 |
| Msa0064440 | Msa0664130 | 0.821723 | 3.469706e-53 | -8.615850e-47 |
| Msa0064440 | Msa0674680 | 0.828844 | 7.170036e-55 | -8.615850e-47 |
| Msa0064440 | Msa0693560 | 0.812155 | 4.886627e-51 | -8.615850e-47 |
| Msa0064440 | Msa0700250 | 0.837977 | 3.780309e-57 | -8.615850e-47 |
| Msa0064440 | Msa0756940 | 0.831366 | 1.739069e-55 | -8.615850e-47 |
| Msa0064440 | Msa0829730 | 0.847087 | 1.443715e-59 | -8.615850e-47 |
| Msa0064440 | Msa0836510 | 0.835862 | 1.310608e-56 | -8.615850e-47 |
| Msa0064440 | Msa0872800 | 0.822835 | 1.915413e-53 | -8.615850e-47 |
| Msa0064440 | Msa0998940 | 0.801847 | 7.421432e-49 | -8.615850e-47 |
| Msa0064440 | Msa1044450 | 0.803895 | 2.801816e-49 | -8.615850e-47 |
| Msa0064440 | Msa1045100 | 0.849697 | 2.738776e-60 | -8.615850e-47 |
| Msa0064440 | Msa1103610 | 0.808095 | 3.664395e-50 | -8.615850e-47 |
| Msa0064440 | Msa1147190 | 0.819837 | 9.414637e-53 | -8.615850e-47 |
| Msa0064440 | Msa1147600 | 0.800612 | 1.328405e-48 | -8.615850e-47 |
| Msa0064440 | Msa1172070 | 0.809203 | 2.124765e-50 | -8.615850e-47 |
| Msa0064440 | Msa1190460 | 0.822694 | 2.065765e-53 | -8.615850e-47 |
| Msa0064440 | Msa1204380 | 0.804053 | 2.597655e-49 | -8.615850e-47 |
| Msa0064440 | Msa1204390 | 0.865823 | 4.463463e-65 | -8.615850e-47 |
| Msa0064440 | Msa1230190 | 0.806070 | 9.834703e-50 | -8.615850e-47 |
| Msa0064440 | Msa1244300 | 0.817603 | 3.026336e-52 | -8.615850e-47 |
| Msa0064440 | Msa1272770 | 0.813671 | 2.274476e-51 | -8.615850e-47 |
| Msa0064440 | Msa1296600 | 0.809335 | 1.991094e-50 | -8.615850e-47 |
| Msa0064440 | Msa1296610 | 0.810677 | 1.023541e-50 | -8.615850e-47 |
| Msa0064440 | Msa1307110 | 0.811255 | 7.671901e-51 | -8.615850e-47 |
| Msa0064440 | Msa1308460 | 0.811663 | 6.256787e-51 | -8.615850e-47 |
| Msa0064440 | Msa1329010 | 0.809099 | 2.237220e-50 | -8.615850e-47 |
| Msa0064440 | Msa1329020 | 0.862551 | 4.678906e-64 | -8.615850e-47 |
| Msa0064440 | Msa1346920 | 0.854857 | 9.309987e-62 | -8.615850e-47 |
| Msa0064440 | Msa1353760 | 0.800424 | 1.450634e-48 | -8.615850e-47 |
| Msa0064440 | Msa1359880 | 0.809518 | 1.819180e-50 | -8.615850e-47 |
| Msa0064440 | Msa1363560 | 0.815961 | 7.069277e-52 | -8.615850e-47 |
| Msa0064440 | Msa1391600 | 0.800387 | 1.475843e-48 | -8.615850e-47 |
| Msa0064440 | Msa1432250 | 0.806730 | 7.136590e-50 | -8.615850e-47 |
| Msa0064440 | Msa1433380 | 0.803934 | 2.749958e-49 | -8.615850e-47 |
| Msa0064440 | Msa1450850 | 0.815312 | 9.859538e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064440 | MtrunA17_Chr1g0166271 | 96.613 | 561 | 17 | 2 | 1 | 560 | 1 | 560 | 0.0 | 1110 |
| Msa0064440 | MtrunA17_Chr3g0143811 | 39.244 | 344 | 177 | 9 | 215 | 552 | 88 | 405 | 2.63e-60 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064440 | AT3G55760.2 | 61.228 | 521 | 185 | 6 | 45 | 556 | 64 | 576 | 0.0 | 623 |
| Msa0064440 | AT3G55760.3 | 61.228 | 521 | 185 | 6 | 45 | 556 | 64 | 576 | 0.0 | 623 |
| Msa0064440 | AT3G55760.1 | 61.228 | 521 | 185 | 6 | 45 | 556 | 64 | 576 | 0.0 | 623 |
| Msa0064440 | AT1G42430.1 | 37.950 | 361 | 203 | 9 | 204 | 557 | 54 | 400 | 4.55e-59 | 202 |
| Msa0064440 | AT1G42430.2 | 45.185 | 270 | 131 | 7 | 291 | 557 | 128 | 383 | 1.53e-58 | 201 |
Find 168 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTTGGTTTCGGCAAATT+AGG | 0.106051 | 1_2:-25551868 | None:intergenic |
| TCTTTCTGTGTTCCTGATTT+TGG | 0.108621 | 1_2:-25549721 | None:intergenic |
| CCATTCTGTTGTCTTAAATT+TGG | 0.144794 | 1_2:-25552094 | None:intergenic |
| TATGAAAGATTTCCTCATTT+TGG | 0.159505 | 1_2:+25551777 | Msa0064440:CDS |
| GAAATGTTTGGCGTGAATTT+TGG | 0.187840 | 1_2:+25550304 | Msa0064440:CDS |
| CAAGAGTCCGGAACACAAAA+TGG | 0.241861 | 1_2:+25549685 | Msa0064440:CDS |
| TTCTGATGAGTTTGGCTATA+AGG | 0.253590 | 1_2:+25550245 | Msa0064440:CDS |
| TAGAGTGGCAAGAAAAGTTT+TGG | 0.265679 | 1_2:+25550217 | Msa0064440:CDS |
| GACCTTTCCTTCTCGATAAC+AGG | 0.278049 | 1_2:-25549865 | None:intergenic |
| TGTGTTTCTTTCTCGTTCTA+TGG | 0.280020 | 1_2:-25548257 | None:intergenic |
| CCAGCATCGAGGGGTGTGTT+TGG | 0.290855 | 1_2:-25550915 | None:intergenic |
| TCCTATATTTCATTTGGTTT+CGG | 0.306090 | 1_2:-25551877 | None:intergenic |
| CAGACGGCGGATGGGAGAAA+TGG | 0.310576 | 1_2:+25551559 | Msa0064440:CDS |
| CATTTGGTTTCGGCAAATTA+GGG | 0.315430 | 1_2:-25551867 | None:intergenic |
| ACCACTCCAGTCATCGTTAG+AGG | 0.318460 | 1_2:+25549954 | Msa0064440:CDS |
| TTCAACCCATTAGCATCATT+TGG | 0.328459 | 1_2:-25549802 | None:intergenic |
| AGACGGCGGATGGGAGAAAT+GGG | 0.342328 | 1_2:+25551560 | Msa0064440:CDS |
| TAAAGTTCCTATATTTCATT+TGG | 0.350537 | 1_2:-25551883 | None:intergenic |
| TGGGAGGCTTCTGATGAGTT+TGG | 0.351158 | 1_2:+25550237 | Msa0064440:CDS |
| ATGCTGGGCACGCTCATGTC+TGG | 0.361471 | 1_2:+25550931 | Msa0064440:CDS |
| TTAATATGAATCTTTAAGAT+TGG | 0.376553 | 1_2:+25552125 | Msa0064440:three_prime_UTR |
| GATCTGACAGAATCAGATTC+AGG | 0.377933 | 1_2:+25549637 | Msa0064440:intron |
| CATCTGGTCAAGCTGAGAAA+TGG | 0.383913 | 1_2:+25550868 | Msa0064440:CDS |
| CTCCACCATCTTGTTCCATC+AGG | 0.387383 | 1_2:-25550114 | None:intergenic |
| GGGAGAAATGGGGCGACAAA+TGG | 0.387783 | 1_2:+25551571 | Msa0064440:CDS |
| CCAAACACACCCCTCGATGC+TGG | 0.389295 | 1_2:+25550915 | Msa0064440:CDS |
| CAGCATCGAGGGGTGTGTTT+GGG | 0.394807 | 1_2:-25550914 | None:intergenic |
| ATGATTTACTGTCCATTTCA+AGG | 0.399040 | 1_2:-25550074 | None:intergenic |
| GTCGCCATTGCATGGAGCTT+TGG | 0.410168 | 1_2:-25548085 | None:intergenic |
| GCATAAAATACACTGACAAA+TGG | 0.414004 | 1_2:+25551523 | Msa0064440:CDS |
| GGTTGTGGTGGTGGTGGAGA+TGG | 0.414639 | 1_2:-25548153 | None:intergenic |
| GCCGAAACCAAATGAAATAT+AGG | 0.417101 | 1_2:+25551876 | Msa0064440:three_prime_UTR |
| TGTGGTGGTGGTGGAGATGG+TGG | 0.421163 | 1_2:-25548150 | None:intergenic |
| TGGAGAAAACTGCAGACAAA+TGG | 0.423581 | 1_2:+25550790 | Msa0064440:CDS |
| GGTGAGCAACACAATGGTTC+TGG | 0.424760 | 1_2:+25551684 | Msa0064440:CDS |
| ATATGATCAATCATATATTC+AGG | 0.425674 | 1_2:-25551921 | None:intergenic |
| GTTCCTCCAAATGATGCTAA+TGG | 0.427103 | 1_2:+25549796 | Msa0064440:CDS |
| GGAGAAAACTGCAGACAAAT+GGG | 0.427855 | 1_2:+25550791 | Msa0064440:CDS |
| TGGCTTTCTTCCACATTTCG+AGG | 0.428161 | 1_2:-25548237 | None:intergenic |
| TTGAAAACTCAGTTCAGCTC+AGG | 0.428748 | 1_2:+25551814 | Msa0064440:CDS |
| GACAGTAAATCATCACCTAT+TGG | 0.431570 | 1_2:+25550084 | Msa0064440:CDS |
| TTCCTTCTCGATAACAGGAT+TGG | 0.433266 | 1_2:-25549860 | None:intergenic |
| TTTCGTGGTTGTGGTGGTGG+TGG | 0.433693 | 1_2:-25548159 | None:intergenic |
| CTCTTCTACGCCGTTGTCGT+TGG | 0.434501 | 1_2:-25548305 | None:intergenic |
| GTATGGTGTGGTTGTGGTGA+AGG | 0.434693 | 1_2:-25548119 | None:intergenic |
| ATCTGGTCAAGCTGAGAAAT+GGG | 0.440062 | 1_2:+25550869 | Msa0064440:CDS |
| TTTCAAGTGAGGAACGTGAT+AGG | 0.442901 | 1_2:+25548371 | Msa0064440:CDS |
| CTTACAATTTATGCAGAAAG+TGG | 0.443168 | 1_2:+25551999 | Msa0064440:three_prime_UTR |
| GCAGACAAATGGGGAAGAAA+TGG | 0.443554 | 1_2:+25550801 | Msa0064440:CDS |
| GAACTTGGTTCTGAGAAATC+TGG | 0.444964 | 1_2:+25550267 | Msa0064440:CDS |
| TTGGAGAGAATCCATGCGTC+AGG | 0.446144 | 1_2:+25550323 | Msa0064440:CDS |
| GAGCAGTAGTGGTGAACATT+GGG | 0.446442 | 1_2:+25551728 | Msa0064440:CDS |
| GGAGAAATGGGGCGACAAAT+GGG | 0.449865 | 1_2:+25551572 | Msa0064440:CDS |
| TGCTGCTAGAGCGCTTCTTA+AGG | 0.450496 | 1_2:+25548438 | Msa0064440:CDS |
| TGATCTGTATGGTGTGGTTG+TGG | 0.456751 | 1_2:-25548125 | None:intergenic |
| GGAAAACGGGCTAATGCATA+TGG | 0.457407 | 1_2:+25550770 | Msa0064440:intron |
| AGCAATAGTGTTCGTTCTGA+TGG | 0.458239 | 1_2:+25548469 | Msa0064440:CDS |
| CACACGAAATGCAAGATACT+TGG | 0.460475 | 1_2:+25551754 | Msa0064440:CDS |
| TGATAGGATTCAAAGATTGC+AGG | 0.460723 | 1_2:+25548387 | Msa0064440:CDS |
| CAAGCTCTTCTGAAAGTGTA+AGG | 0.460941 | 1_2:+25551944 | Msa0064440:three_prime_UTR |
| CATAAAATACACTGACAAAT+GGG | 0.461214 | 1_2:+25551524 | Msa0064440:CDS |
| TCCGCCGTCTGTTGAACGCT+CGG | 0.461325 | 1_2:-25551547 | None:intergenic |
| ATAACAGGATTGGATAATGT+TGG | 0.462117 | 1_2:-25549850 | None:intergenic |
| CTGAGAAATGGGCACACAAA+TGG | 0.464068 | 1_2:+25550880 | Msa0064440:CDS |
| GAGAGCGCTGGAACCGGACT+TGG | 0.466122 | 1_2:+25551661 | Msa0064440:CDS |
| TATGGTGTGGTTGTGGTGAA+GGG | 0.467969 | 1_2:-25548118 | None:intergenic |
| CCATCAGGATTCACACCAAT+AGG | 0.468455 | 1_2:-25550099 | None:intergenic |
| AGCACGGAGAGCGCTGGAAC+CGG | 0.469923 | 1_2:+25551655 | Msa0064440:CDS |
| TACGCCGTTGTCGTTGGAAG+AGG | 0.473216 | 1_2:-25548299 | None:intergenic |
| TGAGTAAGTAAACTCTCAAA+TGG | 0.477010 | 1_2:-25549907 | None:intergenic |
| TGTGTTGCTCACCCCAAGTC+CGG | 0.478776 | 1_2:-25551674 | None:intergenic |
| TGGTAAAGGTGATGAGTGGC+AGG | 0.479211 | 1_2:+25550821 | Msa0064440:CDS |
| CAAACACACCCCTCGATGCT+GGG | 0.481029 | 1_2:+25550916 | Msa0064440:CDS |
| TTGTGGTGAAGGGTTTCAGA+TGG | 0.483490 | 1_2:-25548108 | None:intergenic |
| CACCTACAAATGACACCATC+AGG | 0.483819 | 1_2:-25550159 | None:intergenic |
| AAGAGGCGAGTTTGTTGAAG+TGG | 0.486275 | 1_2:-25548282 | None:intergenic |
| AGTAGTTCGAGCCCTTGAAA+TGG | 0.492366 | 1_2:+25550062 | Msa0064440:CDS |
| ATGAGCGTGCCCAGCATCGA+GGG | 0.492801 | 1_2:-25550925 | None:intergenic |
| TTCCTCCAAATGATGCTAAT+GGG | 0.498741 | 1_2:+25549797 | Msa0064440:CDS |
| AATTTCGATCTTAATGCTCA+TGG | 0.500272 | 1_2:+25551600 | Msa0064440:CDS |
| ACAAGATGGTGGAGAGAGAC+GGG | 0.501456 | 1_2:+25550123 | Msa0064440:CDS |
| ATTTAAGACAACAGAATGGT+TGG | 0.502721 | 1_2:+25552098 | Msa0064440:three_prime_UTR |
| AGCGTTCAACAGACGGCGGA+TGG | 0.504130 | 1_2:+25551550 | Msa0064440:CDS |
| TAATGCTCATGGCATCAAGC+AGG | 0.505562 | 1_2:+25551611 | Msa0064440:CDS |
| TCAGATGGGTCGCCATTGCA+TGG | 0.506467 | 1_2:-25548093 | None:intergenic |
| AAATCTGGACGTGATGCAAA+TGG | 0.507451 | 1_2:+25550282 | Msa0064440:CDS |
| AGAGCGCTGGAACCGGACTT+GGG | 0.507830 | 1_2:+25551662 | Msa0064440:CDS |
| AACTACTTCTGCTGCATGGT+CGG | 0.510338 | 1_2:-25550046 | None:intergenic |
| TTTGAACACTACAATGCATC+TGG | 0.515541 | 1_2:+25550852 | Msa0064440:CDS |
| GAGTTTGGCTATAAGGAACT+TGG | 0.516769 | 1_2:+25550252 | Msa0064440:CDS |
| TTTGAACCTCTAACGATGAC+TGG | 0.524222 | 1_2:-25549960 | None:intergenic |
| ACACAGAAAGATGGTATCCC+AGG | 0.524867 | 1_2:+25549733 | Msa0064440:CDS |
| AAGGTAAGCACGGAGAGCGC+TGG | 0.526501 | 1_2:+25551649 | Msa0064440:CDS |
| AAGAGTCCGGAACACAAAAT+GGG | 0.528614 | 1_2:+25549686 | Msa0064440:CDS |
| TGTTGGATTAACTGAAGACT+TGG | 0.531834 | 1_2:-25549833 | None:intergenic |
| AGAGTCTCCTTCTGTGGAAG+AGG | 0.534266 | 1_2:+25549999 | Msa0064440:CDS |
| TGATTTACTGTCCATTTCAA+GGG | 0.535145 | 1_2:-25550073 | None:intergenic |
| CTGAAAGTGTAAGGAATGAA+TGG | 0.535552 | 1_2:+25551953 | Msa0064440:three_prime_UTR |
| TCTGGATGGGTTCACAAGTA+CGG | 0.540590 | 1_2:+25551702 | Msa0064440:CDS |
| AACCCATTAGCATCATTTGG+AGG | 0.542056 | 1_2:-25549799 | None:intergenic |
| AGAGCAGTAGTGGTGAACAT+TGG | 0.544824 | 1_2:+25551727 | Msa0064440:CDS |
| GACCTGATGGTGTCATTTGT+AGG | 0.552905 | 1_2:+25550157 | Msa0064440:CDS |
| AGCAACACAATGGTTCTGGA+TGG | 0.562143 | 1_2:+25551688 | Msa0064440:CDS |
| AAATCAGGAACACAGAAAGA+TGG | 0.562399 | 1_2:+25549724 | Msa0064440:CDS |
| AGCTCCAAAGCTCCATGCAA+TGG | 0.562923 | 1_2:+25548081 | Msa0064440:exon |
| CTCGAACTACTTCTGCTGCA+TGG | 0.563479 | 1_2:-25550050 | None:intergenic |
| CATCATCATACCTCGAAATG+TGG | 0.564259 | 1_2:+25548227 | Msa0064440:CDS |
| AGACTCTACATTTGAAGAAG+CGG | 0.565948 | 1_2:-25549983 | None:intergenic |
| GTGATGCAAATGGAAATGTT+TGG | 0.566936 | 1_2:+25550292 | Msa0064440:CDS |
| AACAAGATGGTGGAGAGAGA+CGG | 0.567285 | 1_2:+25550122 | Msa0064440:CDS |
| TGTGGTGAAGGGTTTCAGAT+GGG | 0.572706 | 1_2:-25548107 | None:intergenic |
| TAGGGTTCTTGCCTTTCCGA+AGG | 0.573308 | 1_2:-25551849 | None:intergenic |
| ATCCAATCCTGTTATCGAGA+AGG | 0.574315 | 1_2:+25549858 | Msa0064440:CDS |
| CAGGGAGAGACGTGGTGGGA+AGG | 0.575406 | 1_2:+25551630 | Msa0064440:CDS |
| ACGCTCATGTCTGGCACGAA+AGG | 0.579391 | 1_2:+25550940 | Msa0064440:CDS |
| TGAAAACTCAGTTCAGCTCA+GGG | 0.581943 | 1_2:+25551815 | Msa0064440:CDS |
| TGGGCCGAGCGTTCAACAGA+CGG | 0.583995 | 1_2:+25551543 | Msa0064440:CDS |
| CATTTCGAGGTATGATGATG+AGG | 0.586767 | 1_2:-25548224 | None:intergenic |
| AAATGGGGAAGAAATGGTAA+AGG | 0.588296 | 1_2:+25550807 | Msa0064440:CDS |
| AGAGTTTCAGAAGATTCTAG+AGG | 0.589382 | 1_2:+25548348 | Msa0064440:CDS |
| AAGTACGGAAAGAGCAGTAG+TGG | 0.590362 | 1_2:+25551717 | Msa0064440:CDS |
| GATTCTAGAGGTTTCAAGTG+AGG | 0.591311 | 1_2:+25548360 | Msa0064440:CDS |
| CCAAATTTAAGACAACAGAA+TGG | 0.594283 | 1_2:+25552094 | Msa0064440:three_prime_UTR |
| AGATGGTGGAATGATCTGTA+TGG | 0.594483 | 1_2:-25548136 | None:intergenic |
| CCTATTGGTGTGAATCCTGA+TGG | 0.594533 | 1_2:+25550099 | Msa0064440:CDS |
| GCGTTCAACAGACGGCGGAT+GGG | 0.595747 | 1_2:+25551551 | Msa0064440:CDS |
| AAATGTAGAGTCTCCTTCTG+TGG | 0.598333 | 1_2:+25549993 | Msa0064440:CDS |
| AATAACGCTAACCTGACGCA+TGG | 0.605694 | 1_2:-25550334 | None:intergenic |
| GGAATTGAGCAAAGACCTGA+TGG | 0.605980 | 1_2:+25550144 | Msa0064440:CDS |
| CAGTGATAGAAACCAAAATG+AGG | 0.608424 | 1_2:-25551789 | None:intergenic |
| AATGCTCATGGCATCAAGCA+GGG | 0.610191 | 1_2:+25551612 | Msa0064440:CDS |
| CATGAGCGTGCCCAGCATCG+AGG | 0.610977 | 1_2:-25550926 | None:intergenic |
| GAGCGCTGGAACCGGACTTG+GGG | 0.611983 | 1_2:+25551663 | Msa0064440:CDS |
| GCAACACAATGGTTCTGGAT+GGG | 0.612606 | 1_2:+25551689 | Msa0064440:CDS |
| AGCTTGTGACTGTACTAGAA+TGG | 0.613119 | 1_2:-25548062 | None:intergenic |
| TCAAGCAGGGAGAGACGTGG+TGG | 0.614018 | 1_2:+25551625 | Msa0064440:CDS |
| GAAACATATGACGGGTATGG+TGG | 0.617066 | 1_2:+25551498 | Msa0064440:CDS |
| GACTGGAGTGGTGGAAGTGT+AGG | 0.618503 | 1_2:-25549943 | None:intergenic |
| GTGCTGACAAAGCTTTAGAG+TGG | 0.618802 | 1_2:+25550202 | Msa0064440:CDS |
| GGTGGGGTGAAACATATGAC+GGG | 0.620853 | 1_2:+25551490 | Msa0064440:intron |
| ACAACCACGAAAACCAACCA+TGG | 0.620872 | 1_2:+25548170 | Msa0064440:CDS |
| AAAATTTGTGTGTAGTGTGA+AGG | 0.622670 | 1_2:-25548029 | None:intergenic |
| ATCCTGTTATCGAGAAGGAA+AGG | 0.623492 | 1_2:+25549863 | Msa0064440:CDS |
| AGGTGGGGTGAAACATATGA+CGG | 0.630842 | 1_2:+25551489 | Msa0064440:intron |
| TCTAACGATGACTGGAGTGG+TGG | 0.633376 | 1_2:-25549952 | None:intergenic |
| ACGTGGTGGGAAGGTAAGCA+CGG | 0.635347 | 1_2:+25551639 | Msa0064440:CDS |
| GACTGTACTAGAATGGTGAA+TGG | 0.635814 | 1_2:-25548055 | None:intergenic |
| GGTGAAACATATGACGGGTA+TGG | 0.637599 | 1_2:+25551495 | Msa0064440:CDS |
| TGAGCGTGCCCAGCATCGAG+GGG | 0.644819 | 1_2:-25550924 | None:intergenic |
| TTGGTCATGGACACCTCCGG+TGG | 0.645266 | 1_2:+25549765 | Msa0064440:CDS |
| GGAGGAACATCACTATCCAC+CGG | 0.646860 | 1_2:-25549781 | None:intergenic |
| TGGAATCAAGAGAGATTGCG+AGG | 0.648243 | 1_2:-25549887 | None:intergenic |
| GTGGAATGATCTGTATGGTG+TGG | 0.664429 | 1_2:-25548131 | None:intergenic |
| TGTACTAGAATGGTGAATGG+TGG | 0.665160 | 1_2:-25548052 | None:intergenic |
| GACGGCGGATGGGAGAAATG+GGG | 0.665274 | 1_2:+25551561 | Msa0064440:CDS |
| TGTAGGTGGACAGTGATCAG+AGG | 0.666697 | 1_2:+25550174 | Msa0064440:CDS |
| GAGAAAACTGCAGACAAATG+GGG | 0.668805 | 1_2:+25550792 | Msa0064440:CDS |
| GAAATGGTAAAGGTGATGAG+TGG | 0.671438 | 1_2:+25550817 | Msa0064440:CDS |
| CAAGCAGGGAGAGACGTGGT+GGG | 0.673085 | 1_2:+25551626 | Msa0064440:CDS |
| ATCCTGATGGAACAAGATGG+TGG | 0.685087 | 1_2:+25550112 | Msa0064440:CDS |
| TGAATCCTGATGGAACAAGA+TGG | 0.685480 | 1_2:+25550109 | Msa0064440:CDS |
| ACTTGGGGTGAGCAACACAA+TGG | 0.688078 | 1_2:+25551678 | Msa0064440:CDS |
| GCATCAAGCAGGGAGAGACG+TGG | 0.692419 | 1_2:+25551622 | Msa0064440:CDS |
| CTCGCCTCTTCCAACGACAA+CGG | 0.693375 | 1_2:+25548295 | Msa0064440:CDS |
| CTGATGGTGTCATTTGTAGG+TGG | 0.699847 | 1_2:+25550160 | Msa0064440:CDS |
| ACCTCTAACGATGACTGGAG+TGG | 0.704009 | 1_2:-25549955 | None:intergenic |
| GGAACATCACTATCCACCGG+AGG | 0.717633 | 1_2:-25549778 | None:intergenic |
| GCCGAGCGTTCAACAGACGG+CGG | 0.734636 | 1_2:+25551546 | Msa0064440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAATATTGATTTTTTTTA+GGG | + | chr1_2:25549322-25549341 | Msa0064440:intron | 10.0% |
| !!! | AAAATATTGATTTTTTTTAG+GGG | + | chr1_2:25549323-25549342 | Msa0064440:intron | 10.0% |
| !!! | TTCAGATAATTATAAATTTT+TGG | - | chr1_2:25550562-25550581 | None:intergenic | 10.0% |
| !!! | ATTAAACTCTAATGAAATTT+TGG | - | chr1_2:25548876-25548895 | None:intergenic | 15.0% |
| !!! | GCAAAATATTGATTTTTTTT+AGG | + | chr1_2:25549321-25549340 | Msa0064440:intron | 15.0% |
| !!! | AAATATTGATTTTTTTTAGG+GGG | + | chr1_2:25549324-25549343 | Msa0064440:intron | 15.0% |
| !! | ATAATGAAAATACTACATAA+TGG | - | chr1_2:25549407-25549426 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTTAAACTAACA+AGG | + | chr1_2:25549525-25549544 | Msa0064440:intron | 15.0% |
| !! | AGAATAAGTTAGATTAAAAA+GGG | - | chr1_2:25551303-25551322 | None:intergenic | 15.0% |
| !! | TAGAATAAGTTAGATTAAAA+AGG | - | chr1_2:25551304-25551323 | None:intergenic | 15.0% |
| !!! | TTTTAATCTAACTTATTCTA+AGG | + | chr1_2:25551304-25551323 | Msa0064440:intron | 15.0% |
| !!! | TTAATATGAATCTTTAAGAT+TGG | + | chr1_2:25552125-25552144 | Msa0064440:three_prime_UTR | 15.0% |
| !!! | TGAATTTTTGTTCTGATTTT+TGG | + | chr1_2:25548555-25548574 | Msa0064440:intron | 20.0% |
| !! | TTTGGTTAATTGAATAATGT+AGG | + | chr1_2:25548597-25548616 | Msa0064440:intron | 20.0% |
| !! | TTGGTTAATTGAATAATGTA+GGG | + | chr1_2:25548598-25548617 | Msa0064440:intron | 20.0% |
| !! | TAATTCCATATAAAATCAAC+TGG | + | chr1_2:25548680-25548699 | Msa0064440:intron | 20.0% |
| !!! | ATAATCCAGTTGATTTTATA+TGG | - | chr1_2:25548688-25548707 | None:intergenic | 20.0% |
| !!! | CAACTGGATTATTTTATTTT+TGG | + | chr1_2:25548696-25548715 | Msa0064440:intron | 20.0% |
| !! | AATTTCATTAGAGTTTAATC+TGG | + | chr1_2:25548877-25548896 | Msa0064440:intron | 20.0% |
| !! | TATGATTATACCGAATTATT+TGG | + | chr1_2:25549002-25549021 | Msa0064440:intron | 20.0% |
| !! | TTTGAGAAAACCAAATAATT+CGG | - | chr1_2:25549015-25549034 | None:intergenic | 20.0% |
| !!! | AATATTGATTTTTTTTAGGG+GGG | + | chr1_2:25549325-25549344 | Msa0064440:intron | 20.0% |
| !!! | GGAAAAAATTTAAAACAAAC+AGG | + | chr1_2:25551128-25551147 | Msa0064440:intron | 20.0% |
| !! | GCAATATTTATCAAAACATT+GGG | - | chr1_2:25551356-25551375 | None:intergenic | 20.0% |
| !! | TGCAATATTTATCAAAACAT+TGG | - | chr1_2:25551357-25551376 | None:intergenic | 20.0% |
| !! | TAAAGTTCCTATATTTCATT+TGG | - | chr1_2:25551886-25551905 | None:intergenic | 20.0% |
| !! | ATATGATCAATCATATATTC+AGG | - | chr1_2:25551924-25551943 | None:intergenic | 20.0% |
| !!! | TGTTCTGATTTTTGGTTTTT+AGG | + | chr1_2:25548563-25548582 | Msa0064440:intron | 25.0% |
| !!! | GTTCTGATTTTTGGTTTTTA+GGG | + | chr1_2:25548564-25548583 | Msa0064440:intron | 25.0% |
| !!! | ATTTTTGGTTTTTAGGGTTT+TGG | + | chr1_2:25548570-25548589 | Msa0064440:intron | 25.0% |
| !!! | TTTTAGGGTTTTGGATTTTT+TGG | + | chr1_2:25548579-25548598 | Msa0064440:intron | 25.0% |
| !!! | CACATTTTTTTTCATCTACA+AGG | - | chr1_2:25549223-25549242 | None:intergenic | 25.0% |
| ! | CTTGTAGATGAAAAAAAATG+TGG | + | chr1_2:25549221-25549240 | Msa0064440:intron | 25.0% |
| ! | TAGATGAAAAAAAATGTGGT+TGG | + | chr1_2:25549225-25549244 | Msa0064440:intron | 25.0% |
| ! | AGATGAAAAAAAATGTGGTT+GGG | + | chr1_2:25549226-25549245 | Msa0064440:intron | 25.0% |
| ! | ATATTCTGTGTAGTAAAAAG+TGG | + | chr1_2:25549472-25549491 | Msa0064440:intron | 25.0% |
| !!! | TAGAAGTGCTTAAAAAACAT+TGG | - | chr1_2:25550606-25550625 | None:intergenic | 25.0% |
| ! | AAAGATCACTAAACCTTTAA+GGG | - | chr1_2:25551026-25551045 | None:intergenic | 25.0% |
| !!! | AATTCCTTTTTTGCAAACAA+AGG | - | chr1_2:25551073-25551092 | None:intergenic | 25.0% |
| ! | ATTTATCAAAACATTGGGTA+AGG | - | chr1_2:25551351-25551370 | None:intergenic | 25.0% |
| ! | ATCTTGTATCTTAAGCAATA+AGG | + | chr1_2:25551419-25551438 | Msa0064440:intron | 25.0% |
| ! | CATAAAATACACTGACAAAT+GGG | + | chr1_2:25551524-25551543 | Msa0064440:CDS | 25.0% |
| !! | TATGAAAGATTTCCTCATTT+TGG | + | chr1_2:25551777-25551796 | Msa0064440:CDS | 25.0% |
| !! | TCCTATATTTCATTTGGTTT+CGG | - | chr1_2:25551880-25551899 | None:intergenic | 25.0% |
| AAAATTTGTGTGTAGTGTGA+AGG | - | chr1_2:25548032-25548051 | None:intergenic | 30.0% | |
| GGAGATACGTTACAAAAATA+TGG | + | chr1_2:25548490-25548509 | Msa0064440:CDS | 30.0% | |
| AGGATTAGAGATAGATTCTA+TGG | + | chr1_2:25548639-25548658 | Msa0064440:intron | 30.0% | |
| TTCGGTATAATCATATGTGT+TGG | - | chr1_2:25548997-25549016 | None:intergenic | 30.0% | |
| ! | TGGTTTTCTCAAATTAGTAG+CGG | + | chr1_2:25549022-25549041 | Msa0064440:intron | 30.0% |
| AAACCTATGATGCAAAGATA+CGG | - | chr1_2:25549092-25549111 | None:intergenic | 30.0% | |
| AAAAAAAATGTGGTTGGGAT+GGG | + | chr1_2:25549231-25549250 | Msa0064440:intron | 30.0% | |
| ACATAATGGCATGAGAAAAA+GGG | - | chr1_2:25549393-25549412 | None:intergenic | 30.0% | |
| TACATAATGGCATGAGAAAA+AGG | - | chr1_2:25549394-25549413 | None:intergenic | 30.0% | |
| ACATGATTGAAGTCAAGAAA+AGG | + | chr1_2:25549449-25549468 | Msa0064440:intron | 30.0% | |
| ATAACAGGATTGGATAATGT+TGG | - | chr1_2:25549853-25549872 | None:intergenic | 30.0% | |
| TGAGTAAGTAAACTCTCAAA+TGG | - | chr1_2:25549910-25549929 | None:intergenic | 30.0% | |
| TGATTTACTGTCCATTTCAA+GGG | - | chr1_2:25550076-25550095 | None:intergenic | 30.0% | |
| ATGATTTACTGTCCATTTCA+AGG | - | chr1_2:25550077-25550096 | None:intergenic | 30.0% | |
| AACTTCCCTCATAAATTAGT+CGG | + | chr1_2:25550637-25550656 | Msa0064440:intron | 30.0% | |
| ! | ACATACCGACTAATTTATGA+GGG | - | chr1_2:25550645-25550664 | None:intergenic | 30.0% |
| ! | TACATACCGACTAATTTATG+AGG | - | chr1_2:25550646-25550665 | None:intergenic | 30.0% |
| TTAAGTATCCAATACTCTGT+AGG | - | chr1_2:25550717-25550736 | None:intergenic | 30.0% | |
| ! | ATACTGAGCATGATTTTCAA+TGG | + | chr1_2:25550745-25550764 | Msa0064440:intron | 30.0% |
| TCATAGTATTTAGCCCTTAA+AGG | + | chr1_2:25551010-25551029 | Msa0064440:intron | 30.0% | |
| GAAAGATCACTAAACCTTTA+AGG | - | chr1_2:25551027-25551046 | None:intergenic | 30.0% | |
| ! | GATTCCTTTGTTTGCAAAAA+AGG | + | chr1_2:25551066-25551085 | Msa0064440:intron | 30.0% |
| AAATATTGCAAATAGCTTCC+TGG | + | chr1_2:25551367-25551386 | Msa0064440:intron | 30.0% | |
| GCATAAAATACACTGACAAA+TGG | + | chr1_2:25551523-25551542 | Msa0064440:CDS | 30.0% | |
| AATTTCGATCTTAATGCTCA+TGG | + | chr1_2:25551600-25551619 | Msa0064440:CDS | 30.0% | |
| CTTACAATTTATGCAGAAAG+TGG | + | chr1_2:25551999-25552018 | Msa0064440:three_prime_UTR | 30.0% | |
| CCATTCTGTTGTCTTAAATT+TGG | - | chr1_2:25552097-25552116 | None:intergenic | 30.0% | |
| ! | CCAAATTTAAGACAACAGAA+TGG | + | chr1_2:25552094-25552113 | Msa0064440:three_prime_UTR | 30.0% |
| ! | ATTTAAGACAACAGAATGGT+TGG | + | chr1_2:25552098-25552117 | Msa0064440:three_prime_UTR | 30.0% |
| !!! | ATCTTGTTTTTCTCCATGGT+TGG | - | chr1_2:25548186-25548205 | None:intergenic | 35.0% |
| AACCATGGAGAAAAACAAGA+TGG | + | chr1_2:25548185-25548204 | Msa0064440:CDS | 35.0% | |
| ACCATGGAGAAAAACAAGAT+GGG | + | chr1_2:25548186-25548205 | Msa0064440:CDS | 35.0% | |
| TGTGTTTCTTTCTCGTTCTA+TGG | - | chr1_2:25548260-25548279 | None:intergenic | 35.0% | |
| AGAGTTTCAGAAGATTCTAG+AGG | + | chr1_2:25548348-25548367 | Msa0064440:CDS | 35.0% | |
| TGATAGGATTCAAAGATTGC+AGG | + | chr1_2:25548387-25548406 | Msa0064440:CDS | 35.0% | |
| ATTGAATAATGTAGGGACTG+TGG | + | chr1_2:25548605-25548624 | Msa0064440:intron | 35.0% | |
| TATGAAGCATGTGAACTTCT+CGG | + | chr1_2:25548929-25548948 | Msa0064440:intron | 35.0% | |
| ATGTAATGCTCATGCTTATG+TGG | - | chr1_2:25549148-25549167 | None:intergenic | 35.0% | |
| CATAAGCATGAGCATTACAT+TGG | + | chr1_2:25549148-25549167 | Msa0064440:intron | 35.0% | |
| AGACCTTAGTTAAGGGATTT+GGG | - | chr1_2:25549190-25549209 | None:intergenic | 35.0% | |
| AAACCAGAGACCTTAGTTAA+GGG | - | chr1_2:25549197-25549216 | None:intergenic | 35.0% | |
| GAAAAAAAATGTGGTTGGGA+TGG | + | chr1_2:25549230-25549249 | Msa0064440:intron | 35.0% | |
| TCTGTGTAGTAAAAAGTGGA+AGG | + | chr1_2:25549476-25549495 | Msa0064440:intron | 35.0% | |
| TTGTACACGAAAGATGTTAG+TGG | + | chr1_2:25549583-25549602 | Msa0064440:intron | 35.0% | |
| !! | AGTATTTTTGTGCAAGAGTC+CGG | + | chr1_2:25549673-25549692 | Msa0064440:CDS | 35.0% |
| ! | ACTCTTTTTGTGCCAAAATC+AGG | + | chr1_2:25549709-25549728 | Msa0064440:CDS | 35.0% |
| ! | TCTTTCTGTGTTCCTGATTT+TGG | - | chr1_2:25549724-25549743 | None:intergenic | 35.0% |
| AAATCAGGAACACAGAAAGA+TGG | + | chr1_2:25549724-25549743 | Msa0064440:CDS | 35.0% | |
| TTCCTCCAAATGATGCTAAT+GGG | + | chr1_2:25549797-25549816 | Msa0064440:CDS | 35.0% | |
| TTCAACCCATTAGCATCATT+TGG | - | chr1_2:25549805-25549824 | None:intergenic | 35.0% | |
| TGTTGGATTAACTGAAGACT+TGG | - | chr1_2:25549836-25549855 | None:intergenic | 35.0% | |
| AGACTCTACATTTGAAGAAG+CGG | - | chr1_2:25549986-25550005 | None:intergenic | 35.0% | |
| GACAGTAAATCATCACCTAT+TGG | + | chr1_2:25550084-25550103 | Msa0064440:CDS | 35.0% | |
| ! | TAGAGTGGCAAGAAAAGTTT+TGG | + | chr1_2:25550217-25550236 | Msa0064440:CDS | 35.0% |
| ! | AGAGTGGCAAGAAAAGTTTT+GGG | + | chr1_2:25550218-25550237 | Msa0064440:CDS | 35.0% |
| TTCTGATGAGTTTGGCTATA+AGG | + | chr1_2:25550245-25550264 | Msa0064440:CDS | 35.0% | |
| GTGATGCAAATGGAAATGTT+TGG | + | chr1_2:25550292-25550311 | Msa0064440:CDS | 35.0% | |
| ! | GAAATGTTTGGCGTGAATTT+TGG | + | chr1_2:25550304-25550323 | Msa0064440:CDS | 35.0% |
| !! | TGGTCAATGGACTATACTTA+AGG | + | chr1_2:25550435-25550454 | Msa0064440:intron | 35.0% |
| TACTTAAGGTCGAATCAATC+AGG | + | chr1_2:25550449-25550468 | Msa0064440:intron | 35.0% | |
| TTTCATCCAGGGAACAAATT+CGG | - | chr1_2:25550479-25550498 | None:intergenic | 35.0% | |
| CTTATGAACCTACAGAGTAT+TGG | + | chr1_2:25550706-25550725 | Msa0064440:intron | 35.0% | |
| ! | GATTTTCAATGGCAGGAAAA+CGG | + | chr1_2:25550756-25550775 | Msa0064440:intron | 35.0% |
| ! | ATTTTCAATGGCAGGAAAAC+GGG | + | chr1_2:25550757-25550776 | Msa0064440:intron | 35.0% |
| AAATGGGGAAGAAATGGTAA+AGG | + | chr1_2:25550807-25550826 | Msa0064440:CDS | 35.0% | |
| TTTGAACACTACAATGCATC+TGG | + | chr1_2:25550852-25550871 | Msa0064440:CDS | 35.0% | |
| GGGCTAAATACTATGAAAAG+AGG | - | chr1_2:25551006-25551025 | None:intergenic | 35.0% | |
| ! | CAAAACATTGGGTAAGGTTT+TGG | - | chr1_2:25551345-25551364 | None:intergenic | 35.0% |
| CAGTGATAGAAACCAAAATG+AGG | - | chr1_2:25551792-25551811 | None:intergenic | 35.0% | |
| AAGTACAAAAACCTTCGGAA+AGG | + | chr1_2:25551838-25551857 | Msa0064440:CDS | 35.0% | |
| ! | CATTTGGTTTCGGCAAATTA+GGG | - | chr1_2:25551870-25551889 | None:intergenic | 35.0% |
| ! | TCATTTGGTTTCGGCAAATT+AGG | - | chr1_2:25551871-25551890 | None:intergenic | 35.0% |
| GCCGAAACCAAATGAAATAT+AGG | + | chr1_2:25551876-25551895 | Msa0064440:three_prime_UTR | 35.0% | |
| ! | CTGAAAGTGTAAGGAATGAA+TGG | + | chr1_2:25551953-25551972 | Msa0064440:three_prime_UTR | 35.0% |
| TGTACTAGAATGGTGAATGG+TGG | - | chr1_2:25548055-25548074 | None:intergenic | 40.0% | |
| GACTGTACTAGAATGGTGAA+TGG | - | chr1_2:25548058-25548077 | None:intergenic | 40.0% | |
| AGCTTGTGACTGTACTAGAA+TGG | - | chr1_2:25548065-25548084 | None:intergenic | 40.0% | |
| !! | AGATGGTGGAATGATCTGTA+TGG | - | chr1_2:25548139-25548158 | None:intergenic | 40.0% |
| !!! | ACCCATCTTGTTTTTCTCCA+TGG | - | chr1_2:25548190-25548209 | None:intergenic | 40.0% |
| ! | CATTTCGAGGTATGATGATG+AGG | - | chr1_2:25548227-25548246 | None:intergenic | 40.0% |
| CATCATCATACCTCGAAATG+TGG | + | chr1_2:25548227-25548246 | Msa0064440:CDS | 40.0% | |
| ! | GATTCTAGAGGTTTCAAGTG+AGG | + | chr1_2:25548360-25548379 | Msa0064440:CDS | 40.0% |
| ! | TTTCAAGTGAGGAACGTGAT+AGG | + | chr1_2:25548371-25548390 | Msa0064440:CDS | 40.0% |
| AGCAATAGTGTTCGTTCTGA+TGG | + | chr1_2:25548469-25548488 | Msa0064440:CDS | 40.0% | |
| ATAATGTAGGGACTGTGGTT+TGG | + | chr1_2:25548610-25548629 | Msa0064440:intron | 40.0% | |
| TGTCCGTATCTTTGCATCAT+AGG | + | chr1_2:25549086-25549105 | Msa0064440:intron | 40.0% | |
| CATGCTTATGTGGCAATGTA+TGG | - | chr1_2:25549138-25549157 | None:intergenic | 40.0% | |
| GAGACCTTAGTTAAGGGATT+TGG | - | chr1_2:25549191-25549210 | None:intergenic | 40.0% | |
| AATCCCTTAACTAAGGTCTC+TGG | + | chr1_2:25549191-25549210 | Msa0064440:intron | 40.0% | |
| CAAACCAGAGACCTTAGTTA+AGG | - | chr1_2:25549198-25549217 | None:intergenic | 40.0% | |
| TGACGTTAGTAGTTTACAGC+TGG | + | chr1_2:25549361-25549380 | Msa0064440:intron | 40.0% | |
| GACGTTAGTAGTTTACAGCT+GGG | + | chr1_2:25549362-25549381 | Msa0064440:intron | 40.0% | |
| GATCTGACAGAATCAGATTC+AGG | + | chr1_2:25549637-25549656 | Msa0064440:intron | 40.0% | |
| AAGAGTCCGGAACACAAAAT+GGG | + | chr1_2:25549686-25549705 | Msa0064440:CDS | 40.0% | |
| ! | AAGAGTCCCATTTTGTGTTC+CGG | - | chr1_2:25549695-25549714 | None:intergenic | 40.0% |
| ATGACCAAAAATCAGGACCT+GGG | - | chr1_2:25549753-25549772 | None:intergenic | 40.0% | |
| GTTCCTCCAAATGATGCTAA+TGG | + | chr1_2:25549796-25549815 | Msa0064440:CDS | 40.0% | |
| AACCCATTAGCATCATTTGG+AGG | - | chr1_2:25549802-25549821 | None:intergenic | 40.0% | |
| ATCCAATCCTGTTATCGAGA+AGG | + | chr1_2:25549858-25549877 | Msa0064440:CDS | 40.0% | |
| TTCCTTCTCGATAACAGGAT+TGG | - | chr1_2:25549863-25549882 | None:intergenic | 40.0% | |
| ATCCTGTTATCGAGAAGGAA+AGG | + | chr1_2:25549863-25549882 | Msa0064440:CDS | 40.0% | |
| TTTGAACCTCTAACGATGAC+TGG | - | chr1_2:25549963-25549982 | None:intergenic | 40.0% | |
| AAATGTAGAGTCTCCTTCTG+TGG | + | chr1_2:25549993-25550012 | Msa0064440:CDS | 40.0% | |
| ! | TTCTTTTCCTCTTCCACAGA+AGG | - | chr1_2:25550009-25550028 | None:intergenic | 40.0% |
| TGAATCCTGATGGAACAAGA+TGG | + | chr1_2:25550109-25550128 | Msa0064440:CDS | 40.0% | |
| GAGTTTGGCTATAAGGAACT+TGG | + | chr1_2:25550252-25550271 | Msa0064440:CDS | 40.0% | |
| !! | GAACTTGGTTCTGAGAAATC+TGG | + | chr1_2:25550267-25550286 | Msa0064440:CDS | 40.0% |
| AAATCTGGACGTGATGCAAA+TGG | + | chr1_2:25550282-25550301 | Msa0064440:CDS | 40.0% | |
| TCACCTGAAAACCAAGTGAT+TGG | + | chr1_2:25550405-25550424 | Msa0064440:intron | 40.0% | |
| !! | AGACCAATCACTTGGTTTTC+AGG | - | chr1_2:25550411-25550430 | None:intergenic | 40.0% |
| TCCCTGGATGAAACAATCTT+TGG | + | chr1_2:25550486-25550505 | Msa0064440:intron | 40.0% | |
| GCCAAAGATTGTTTCATCCA+GGG | - | chr1_2:25550490-25550509 | None:intergenic | 40.0% | |
| AGCCAAAGATTGTTTCATCC+AGG | - | chr1_2:25550491-25550510 | None:intergenic | 40.0% | |
| AAGATTCATGAACGCACCAA+GGG | - | chr1_2:25550689-25550708 | None:intergenic | 40.0% | |
| TAAGATTCATGAACGCACCA+AGG | - | chr1_2:25550690-25550709 | None:intergenic | 40.0% | |
| ! | TGAGCATGATTTTCAATGGC+AGG | + | chr1_2:25550749-25550768 | Msa0064440:intron | 40.0% |
| TGGAGAAAACTGCAGACAAA+TGG | + | chr1_2:25550790-25550809 | Msa0064440:CDS | 40.0% | |
| GGAGAAAACTGCAGACAAAT+GGG | + | chr1_2:25550791-25550810 | Msa0064440:CDS | 40.0% | |
| GAGAAAACTGCAGACAAATG+GGG | + | chr1_2:25550792-25550811 | Msa0064440:CDS | 40.0% | |
| GAAATGGTAAAGGTGATGAG+TGG | + | chr1_2:25550817-25550836 | Msa0064440:CDS | 40.0% | |
| ATCTGGTCAAGCTGAGAAAT+GGG | + | chr1_2:25550869-25550888 | Msa0064440:CDS | 40.0% | |
| !! | ATCGCAAATGAGCATTGAGT+GGG | - | chr1_2:25551108-25551127 | None:intergenic | 40.0% |
| CAGGATATAAGCATGTCTCA+TGG | + | chr1_2:25551147-25551166 | Msa0064440:intron | 40.0% | |
| GATTAAAAAGGGAAGCAACG+TGG | - | chr1_2:25551292-25551311 | None:intergenic | 40.0% | |
| !! | AACATTGGGTAAGGTTTTGG+AGG | - | chr1_2:25551342-25551361 | None:intergenic | 40.0% |
| CACACGAAATGCAAGATACT+TGG | + | chr1_2:25551754-25551773 | Msa0064440:CDS | 40.0% | |
| TTGAAAACTCAGTTCAGCTC+AGG | + | chr1_2:25551814-25551833 | Msa0064440:CDS | 40.0% | |
| TGAAAACTCAGTTCAGCTCA+GGG | + | chr1_2:25551815-25551834 | Msa0064440:CDS | 40.0% | |
| ! | CAGGGAAGTACAAAAACCTT+CGG | + | chr1_2:25551833-25551852 | Msa0064440:CDS | 40.0% |
| ! | CAAGCTCTTCTGAAAGTGTA+AGG | + | chr1_2:25551944-25551963 | Msa0064440:three_prime_UTR | 40.0% |
| TGTGGTGAAGGGTTTCAGAT+GGG | - | chr1_2:25548110-25548129 | None:intergenic | 45.0% | |
| TTGTGGTGAAGGGTTTCAGA+TGG | - | chr1_2:25548111-25548130 | None:intergenic | 45.0% | |
| TATGGTGTGGTTGTGGTGAA+GGG | - | chr1_2:25548121-25548140 | None:intergenic | 45.0% | |
| TGATCTGTATGGTGTGGTTG+TGG | - | chr1_2:25548128-25548147 | None:intergenic | 45.0% | |
| GTGGAATGATCTGTATGGTG+TGG | - | chr1_2:25548134-25548153 | None:intergenic | 45.0% | |
| !!! | ATGGTTGGTTTTCGTGGTTG+TGG | - | chr1_2:25548171-25548190 | None:intergenic | 45.0% |
| ACAACCACGAAAACCAACCA+TGG | + | chr1_2:25548170-25548189 | Msa0064440:CDS | 45.0% | |
| !!! | TTCTCCATGGTTGGTTTTCG+TGG | - | chr1_2:25548177-25548196 | None:intergenic | 45.0% |
| TGGCTTTCTTCCACATTTCG+AGG | - | chr1_2:25548240-25548259 | None:intergenic | 45.0% | |
| !! | AAGAGGCGAGTTTGTTGAAG+TGG | - | chr1_2:25548285-25548304 | None:intergenic | 45.0% |
| GCATGTGAACTTCTCGGATT+AGG | + | chr1_2:25548935-25548954 | Msa0064440:intron | 45.0% | |
| ! | TTCTCGGATTAGGTGTGTCT+CGG | + | chr1_2:25548945-25548964 | Msa0064440:intron | 45.0% |
| !! | TGTTGGTGTCGAACACTGAT+GGG | - | chr1_2:25548980-25548999 | None:intergenic | 45.0% |
| ! | GAGCATTACATTGGTCTGAG+TGG | + | chr1_2:25549157-25549176 | Msa0064440:intron | 45.0% |
| ! | TACATTGGTCTGAGTGGAAC+TGG | + | chr1_2:25549163-25549182 | Msa0064440:intron | 45.0% |
| GGACCCAAATCCCTTAACTA+AGG | + | chr1_2:25549184-25549203 | Msa0064440:intron | 45.0% | |
| AAAAATGTGGTTGGGATGGG+AGG | + | chr1_2:25549234-25549253 | Msa0064440:intron | 45.0% | |
| AAAATGTGGTTGGGATGGGA+GGG | + | chr1_2:25549235-25549254 | Msa0064440:intron | 45.0% | |
| TTCTGGTAGAGATCGGTCAT+CGG | + | chr1_2:25549288-25549307 | Msa0064440:intron | 45.0% | |
| CAAGAGTCCGGAACACAAAA+TGG | + | chr1_2:25549685-25549704 | Msa0064440:CDS | 45.0% | |
| ACACAGAAAGATGGTATCCC+AGG | + | chr1_2:25549733-25549752 | Msa0064440:CDS | 45.0% | |
| ! | GTATCCCAGGTCCTGATTTT+TGG | + | chr1_2:25549746-25549765 | Msa0064440:CDS | 45.0% |
| CATGACCAAAAATCAGGACC+TGG | - | chr1_2:25549754-25549773 | None:intergenic | 45.0% | |
| !!! | CAGGTCCTGATTTTTGGTCA+TGG | + | chr1_2:25549752-25549771 | Msa0064440:CDS | 45.0% |
| GGTGTCCATGACCAAAAATC+AGG | - | chr1_2:25549760-25549779 | None:intergenic | 45.0% | |
| !! | TTTTTGGTCATGGACACCTC+CGG | + | chr1_2:25549762-25549781 | Msa0064440:CDS | 45.0% |
| GACCTTTCCTTCTCGATAAC+AGG | - | chr1_2:25549868-25549887 | None:intergenic | 45.0% | |
| TGGAATCAAGAGAGATTGCG+AGG | - | chr1_2:25549890-25549909 | None:intergenic | 45.0% | |
| AACTACTTCTGCTGCATGGT+CGG | - | chr1_2:25550049-25550068 | None:intergenic | 45.0% | |
| AGTAGTTCGAGCCCTTGAAA+TGG | + | chr1_2:25550062-25550081 | Msa0064440:CDS | 45.0% | |
| CCATCAGGATTCACACCAAT+AGG | - | chr1_2:25550102-25550121 | None:intergenic | 45.0% | |
| CCTATTGGTGTGAATCCTGA+TGG | + | chr1_2:25550099-25550118 | Msa0064440:CDS | 45.0% | |
| ATCCTGATGGAACAAGATGG+TGG | + | chr1_2:25550112-25550131 | Msa0064440:CDS | 45.0% | |
| !! | AACAAGATGGTGGAGAGAGA+CGG | + | chr1_2:25550122-25550141 | Msa0064440:CDS | 45.0% |
| GGAATTGAGCAAAGACCTGA+TGG | + | chr1_2:25550144-25550163 | Msa0064440:CDS | 45.0% | |
| !! | GACCTGATGGTGTCATTTGT+AGG | + | chr1_2:25550157-25550176 | Msa0064440:CDS | 45.0% |
| CACCTACAAATGACACCATC+AGG | - | chr1_2:25550162-25550181 | None:intergenic | 45.0% | |
| !! | CTGATGGTGTCATTTGTAGG+TGG | + | chr1_2:25550160-25550179 | Msa0064440:CDS | 45.0% |
| !! | GTGCTGACAAAGCTTTAGAG+TGG | + | chr1_2:25550202-25550221 | Msa0064440:CDS | 45.0% |
| !!! | GTGGCAAGAAAAGTTTTGGG+AGG | + | chr1_2:25550221-25550240 | Msa0064440:CDS | 45.0% |
| AATAACGCTAACCTGACGCA+TGG | - | chr1_2:25550337-25550356 | None:intergenic | 45.0% | |
| !! | ACCAAGTGATTGGTCTCAAG+TGG | + | chr1_2:25550415-25550434 | Msa0064440:intron | 45.0% |
| ACCACTTGAGACCAATCACT+TGG | - | chr1_2:25550419-25550438 | None:intergenic | 45.0% | |
| !! | GATTGGTCTCAAGTGGTCAA+TGG | + | chr1_2:25550422-25550441 | Msa0064440:intron | 45.0% |
| ! | GCTAGACTTTTCTTACCTCC+TGG | + | chr1_2:25550508-25550527 | Msa0064440:intron | 45.0% |
| ! | ACCCTCTTGTTTCCTGAGTT+CGG | - | chr1_2:25550534-25550553 | None:intergenic | 45.0% |
| TCCTTTGCAAACTGTACCCT+TGG | + | chr1_2:25550670-25550689 | Msa0064440:intron | 45.0% | |
| ! | ACCAAGGGTACAGTTTGCAA+AGG | - | chr1_2:25550674-25550693 | None:intergenic | 45.0% |
| !! | GGAAAACGGGCTAATGCATA+TGG | + | chr1_2:25550770-25550789 | Msa0064440:intron | 45.0% |
| GCAGACAAATGGGGAAGAAA+TGG | + | chr1_2:25550801-25550820 | Msa0064440:CDS | 45.0% | |
| GTGATGAGTGGCAGGAAAAA+TGG | + | chr1_2:25550829-25550848 | Msa0064440:CDS | 45.0% | |
| CATCTGGTCAAGCTGAGAAA+TGG | + | chr1_2:25550868-25550887 | Msa0064440:CDS | 45.0% | |
| CTGAGAAATGGGCACACAAA+TGG | + | chr1_2:25550880-25550899 | Msa0064440:CDS | 45.0% | |
| !! | CATCGCAAATGAGCATTGAG+TGG | - | chr1_2:25551109-25551128 | None:intergenic | 45.0% |
| CACTCAATGCTCATTTGCGA+TGG | + | chr1_2:25551107-25551126 | Msa0064440:intron | 45.0% | |
| AAAAAGGGAAGCAACGTGGA+GGG | - | chr1_2:25551288-25551307 | None:intergenic | 45.0% | |
| TAAAAAGGGAAGCAACGTGG+AGG | - | chr1_2:25551289-25551308 | None:intergenic | 45.0% | |
| !!! | TAAGGTTTTGGAGGCTGACA+GGG | - | chr1_2:25551333-25551352 | None:intergenic | 45.0% |
| ATTCACTCGCAGATTCTTCC+AGG | - | chr1_2:25551388-25551407 | None:intergenic | 45.0% | |
| CTGTGTTCTGTTCCTTTGTC+AGG | + | chr1_2:25551469-25551488 | Msa0064440:intron | 45.0% | |
| TGTTCTGTTCCTTTGTCAGG+TGG | + | chr1_2:25551472-25551491 | Msa0064440:intron | 45.0% | |
| GTTCTGTTCCTTTGTCAGGT+GGG | + | chr1_2:25551473-25551492 | Msa0064440:intron | 45.0% | |
| TTCTGTTCCTTTGTCAGGTG+GGG | + | chr1_2:25551474-25551493 | Msa0064440:intron | 45.0% | |
| AGGTGGGGTGAAACATATGA+CGG | + | chr1_2:25551489-25551508 | Msa0064440:intron | 45.0% | |
| !! | GGTGAAACATATGACGGGTA+TGG | + | chr1_2:25551495-25551514 | Msa0064440:CDS | 45.0% |
| !! | GAAACATATGACGGGTATGG+TGG | + | chr1_2:25551498-25551517 | Msa0064440:CDS | 45.0% |
| TAATGCTCATGGCATCAAGC+AGG | + | chr1_2:25551611-25551630 | Msa0064440:CDS | 45.0% | |
| AATGCTCATGGCATCAAGCA+GGG | + | chr1_2:25551612-25551631 | Msa0064440:CDS | 45.0% | |
| !! | AGCAACACAATGGTTCTGGA+TGG | + | chr1_2:25551688-25551707 | Msa0064440:CDS | 45.0% |
| !! | GCAACACAATGGTTCTGGAT+GGG | + | chr1_2:25551689-25551708 | Msa0064440:CDS | 45.0% |
| ! | TCTGGATGGGTTCACAAGTA+CGG | + | chr1_2:25551702-25551721 | Msa0064440:CDS | 45.0% |
| AAGTACGGAAAGAGCAGTAG+TGG | + | chr1_2:25551717-25551736 | Msa0064440:CDS | 45.0% | |
| AGAGCAGTAGTGGTGAACAT+TGG | + | chr1_2:25551727-25551746 | Msa0064440:CDS | 45.0% | |
| GAGCAGTAGTGGTGAACATT+GGG | + | chr1_2:25551728-25551747 | Msa0064440:CDS | 45.0% | |
| AGCTCCAAAGCTCCATGCAA+TGG | + | chr1_2:25548081-25548100 | Msa0064440:exon | 50.0% | |
| GTATGGTGTGGTTGTGGTGA+AGG | - | chr1_2:25548122-25548141 | None:intergenic | 50.0% | |
| !!! | GTTGGTTTTCGTGGTTGTGG+TGG | - | chr1_2:25548168-25548187 | None:intergenic | 50.0% |
| ! | TGCTGCTAGAGCGCTTCTTA+AGG | + | chr1_2:25548438-25548457 | Msa0064440:CDS | 50.0% |
| !! | TAGGGACTGTGGTTTGGTGA+TGG | + | chr1_2:25548616-25548635 | Msa0064440:intron | 50.0% |
| !! | GTGTTGGTGTCGAACACTGA+TGG | - | chr1_2:25548981-25549000 | None:intergenic | 50.0% |
| AAATGTGGTTGGGATGGGAG+GGG | + | chr1_2:25549236-25549255 | Msa0064440:intron | 50.0% | |
| GATCTCTACCAGAAACCTGG+CGG | - | chr1_2:25549282-25549301 | None:intergenic | 50.0% | |
| !! | GCCAGGTTTCTGGTAGAGAT+CGG | + | chr1_2:25549281-25549300 | Msa0064440:intron | 50.0% |
| ACCGATCTCTACCAGAAACC+TGG | - | chr1_2:25549285-25549304 | None:intergenic | 50.0% | |
| GGAGGAACATCACTATCCAC+CGG | - | chr1_2:25549784-25549803 | None:intergenic | 50.0% | |
| TCTAACGATGACTGGAGTGG+TGG | - | chr1_2:25549955-25549974 | None:intergenic | 50.0% | |
| ACCACTCCAGTCATCGTTAG+AGG | + | chr1_2:25549954-25549973 | Msa0064440:CDS | 50.0% | |
| ACCTCTAACGATGACTGGAG+TGG | - | chr1_2:25549958-25549977 | None:intergenic | 50.0% | |
| AGAGTCTCCTTCTGTGGAAG+AGG | + | chr1_2:25549999-25550018 | Msa0064440:CDS | 50.0% | |
| CTCGAACTACTTCTGCTGCA+TGG | - | chr1_2:25550053-25550072 | None:intergenic | 50.0% | |
| CTCCACCATCTTGTTCCATC+AGG | - | chr1_2:25550117-25550136 | None:intergenic | 50.0% | |
| !! | ACAAGATGGTGGAGAGAGAC+GGG | + | chr1_2:25550123-25550142 | Msa0064440:CDS | 50.0% |
| TGTAGGTGGACAGTGATCAG+AGG | + | chr1_2:25550174-25550193 | Msa0064440:CDS | 50.0% | |
| TGGGAGGCTTCTGATGAGTT+TGG | + | chr1_2:25550237-25550256 | Msa0064440:CDS | 50.0% | |
| TTGGAGAGAATCCATGCGTC+AGG | + | chr1_2:25550323-25550342 | Msa0064440:CDS | 50.0% | |
| ! | GGAACACCGAATTTGTTCCC+TGG | + | chr1_2:25550470-25550489 | Msa0064440:intron | 50.0% |
| GCCGAACTCAGGAAACAAGA+GGG | + | chr1_2:25550530-25550549 | Msa0064440:intron | 50.0% | |
| TGGTAAAGGTGATGAGTGGC+AGG | + | chr1_2:25550821-25550840 | Msa0064440:CDS | 50.0% | |
| !!! | GTAAGGTTTTGGAGGCTGAC+AGG | - | chr1_2:25551334-25551353 | None:intergenic | 50.0% |
| TGTTTCACCCCACCTGACAA+AGG | - | chr1_2:25551484-25551503 | None:intergenic | 50.0% | |
| GGTGGGGTGAAACATATGAC+GGG | + | chr1_2:25551490-25551509 | Msa0064440:intron | 50.0% | |
| GGAGAAATGGGGCGACAAAT+GGG | + | chr1_2:25551572-25551591 | Msa0064440:CDS | 50.0% | |
| ACTTGGGGTGAGCAACACAA+TGG | + | chr1_2:25551678-25551697 | Msa0064440:CDS | 50.0% | |
| GGTGAGCAACACAATGGTTC+TGG | + | chr1_2:25551684-25551703 | Msa0064440:CDS | 50.0% | |
| TAGGGTTCTTGCCTTTCCGA+AGG | - | chr1_2:25551852-25551871 | None:intergenic | 50.0% | |
| GTCGCCATTGCATGGAGCTT+TGG | - | chr1_2:25548088-25548107 | None:intergenic | 55.0% | |
| TCAGATGGGTCGCCATTGCA+TGG | - | chr1_2:25548096-25548115 | None:intergenic | 55.0% | |
| !! | TTTCGTGGTTGTGGTGGTGG+TGG | - | chr1_2:25548162-25548181 | None:intergenic | 55.0% |
| ! | GGTTTTCGTGGTTGTGGTGG+TGG | - | chr1_2:25548165-25548184 | None:intergenic | 55.0% |
| CTCGCCTCTTCCAACGACAA+CGG | + | chr1_2:25548295-25548314 | Msa0064440:CDS | 55.0% | |
| TACGCCGTTGTCGTTGGAAG+AGG | - | chr1_2:25548302-25548321 | None:intergenic | 55.0% | |
| CTCTTCTACGCCGTTGTCGT+TGG | - | chr1_2:25548308-25548327 | None:intergenic | 55.0% | |
| !! | GGACTGTGGTTTGGTGATGG+AGG | + | chr1_2:25548619-25548638 | Msa0064440:intron | 55.0% |
| GATTAGGTGTGTCTCGGCGT+CGG | + | chr1_2:25548951-25548970 | Msa0064440:intron | 55.0% | |
| !! | AGTAGCGGTGTCGTTCGTGT+CGG | + | chr1_2:25549037-25549056 | Msa0064440:intron | 55.0% |
| GTCAGTGTCCATGTCGTGTC+TGG | + | chr1_2:25549063-25549082 | Msa0064440:intron | 55.0% | |
| TACGGACACCAGACACGACA+TGG | - | chr1_2:25549074-25549093 | None:intergenic | 55.0% | |
| GGAGGGGAGACTCCACTATA+GGG | + | chr1_2:25549252-25549271 | Msa0064440:intron | 55.0% | |
| GAGGGGAGACTCCACTATAG+GGG | + | chr1_2:25549253-25549272 | Msa0064440:intron | 55.0% | |
| AGGGGAGACTCCACTATAGG+GGG | + | chr1_2:25549254-25549273 | Msa0064440:intron | 55.0% | |
| GGAACATCACTATCCACCGG+AGG | - | chr1_2:25549781-25549800 | None:intergenic | 55.0% | |
| ! | GACTGGAGTGGTGGAAGTGT+AGG | - | chr1_2:25549946-25549965 | None:intergenic | 55.0% |
| CTTGTTTCCTGAGTTCGGCC+AGG | - | chr1_2:25550529-25550548 | None:intergenic | 55.0% | |
| GGCCGAACTCAGGAAACAAG+AGG | + | chr1_2:25550529-25550548 | Msa0064440:intron | 55.0% | |
| ! | CAGCATCGAGGGGTGTGTTT+GGG | - | chr1_2:25550917-25550936 | None:intergenic | 55.0% |
| CAAACACACCCCTCGATGCT+GGG | + | chr1_2:25550916-25550935 | Msa0064440:CDS | 55.0% | |
| ACGCTCATGTCTGGCACGAA+AGG | + | chr1_2:25550940-25550959 | Msa0064440:CDS | 55.0% | |
| AGACGGCGGATGGGAGAAAT+GGG | + | chr1_2:25551560-25551579 | Msa0064440:CDS | 55.0% | |
| GGGAGAAATGGGGCGACAAA+TGG | + | chr1_2:25551571-25551590 | Msa0064440:CDS | 55.0% | |
| ! | ACGTGGTGGGAAGGTAAGCA+CGG | + | chr1_2:25551639-25551658 | Msa0064440:CDS | 55.0% |
| ! | TGTGTTGCTCACCCCAAGTC+CGG | - | chr1_2:25551677-25551696 | None:intergenic | 55.0% |
| !! | TGTGGTGGTGGTGGAGATGG+TGG | - | chr1_2:25548153-25548172 | None:intergenic | 60.0% |
| !! | GGTTGTGGTGGTGGTGGAGA+TGG | - | chr1_2:25548156-25548175 | None:intergenic | 60.0% |
| GGGAGGGGAGACTCCACTAT+AGG | + | chr1_2:25549251-25549270 | Msa0064440:intron | 60.0% | |
| GGGGAGACTCCACTATAGGG+GGG | + | chr1_2:25549255-25549274 | Msa0064440:intron | 60.0% | |
| TTGGTCATGGACACCTCCGG+TGG | + | chr1_2:25549765-25549784 | Msa0064440:CDS | 60.0% | |
| CTTACCTCCTGGCCGAACTC+AGG | + | chr1_2:25550519-25550538 | Msa0064440:intron | 60.0% | |
| GTTTCCTGAGTTCGGCCAGG+AGG | - | chr1_2:25550526-25550545 | None:intergenic | 60.0% | |
| ! | CCAGCATCGAGGGGTGTGTT+TGG | - | chr1_2:25550918-25550937 | None:intergenic | 60.0% |
| CCAAACACACCCCTCGATGC+TGG | + | chr1_2:25550915-25550934 | Msa0064440:CDS | 60.0% | |
| ! | ATGAGCGTGCCCAGCATCGA+GGG | - | chr1_2:25550928-25550947 | None:intergenic | 60.0% |
| ATGCTGGGCACGCTCATGTC+TGG | + | chr1_2:25550931-25550950 | Msa0064440:CDS | 60.0% | |
| TGGGCCGAGCGTTCAACAGA+CGG | + | chr1_2:25551543-25551562 | Msa0064440:CDS | 60.0% | |
| TCCGCCGTCTGTTGAACGCT+CGG | - | chr1_2:25551550-25551569 | None:intergenic | 60.0% | |
| AGCGTTCAACAGACGGCGGA+TGG | + | chr1_2:25551550-25551569 | Msa0064440:CDS | 60.0% | |
| GCGTTCAACAGACGGCGGAT+GGG | + | chr1_2:25551551-25551570 | Msa0064440:CDS | 60.0% | |
| CAGACGGCGGATGGGAGAAA+TGG | + | chr1_2:25551559-25551578 | Msa0064440:CDS | 60.0% | |
| GACGGCGGATGGGAGAAATG+GGG | + | chr1_2:25551561-25551580 | Msa0064440:CDS | 60.0% | |
| GCATCAAGCAGGGAGAGACG+TGG | + | chr1_2:25551622-25551641 | Msa0064440:CDS | 60.0% | |
| TCAAGCAGGGAGAGACGTGG+TGG | + | chr1_2:25551625-25551644 | Msa0064440:CDS | 60.0% | |
| CAAGCAGGGAGAGACGTGGT+GGG | + | chr1_2:25551626-25551645 | Msa0064440:CDS | 60.0% | |
| ! | AAGGTAAGCACGGAGAGCGC+TGG | + | chr1_2:25551649-25551668 | Msa0064440:CDS | 60.0% |
| !! | AGAGCGCTGGAACCGGACTT+GGG | + | chr1_2:25551662-25551681 | Msa0064440:CDS | 60.0% |
| ! | TGAGCGTGCCCAGCATCGAG+GGG | - | chr1_2:25550927-25550946 | None:intergenic | 65.0% |
| CATGAGCGTGCCCAGCATCG+AGG | - | chr1_2:25550929-25550948 | None:intergenic | 65.0% | |
| GCCGAGCGTTCAACAGACGG+CGG | + | chr1_2:25551546-25551565 | Msa0064440:CDS | 65.0% | |
| ! | CAGGGAGAGACGTGGTGGGA+AGG | + | chr1_2:25551630-25551649 | Msa0064440:CDS | 65.0% |
| !! | AGCACGGAGAGCGCTGGAAC+CGG | + | chr1_2:25551655-25551674 | Msa0064440:CDS | 65.0% |
| !! | GAGAGCGCTGGAACCGGACT+TGG | + | chr1_2:25551661-25551680 | Msa0064440:CDS | 65.0% |
| !! | GAGCGCTGGAACCGGACTTG+GGG | + | chr1_2:25551663-25551682 | Msa0064440:CDS | 65.0% |
| ! | CCTGGCGGACCCCCCTATAG+TGG | - | chr1_2:25549267-25549286 | None:intergenic | 70.0% |
| CCACTATAGGGGGGTCCGCC+AGG | + | chr1_2:25549264-25549283 | Msa0064440:intron | 70.0% | |
| AGGGGGGTCCGCCAGGTTTC+TGG | + | chr1_2:25549271-25549290 | Msa0064440:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 25548024 | 25552148 | 25548024 | ID=Msa0064440;Name=Msa0064440 |
| chr1_2 | mRNA | 25548024 | 25552148 | 25548024 | ID=Msa0064440-mRNA-1;Parent=Msa0064440;Name=Msa0064440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=76|1|1|1|1|1|4|276|560 |
| chr1_2 | exon | 25548024 | 25548511 | 25548024 | ID=Msa0064440-mRNA-1:exon:9111;Parent=Msa0064440-mRNA-1 |
| chr1_2 | exon | 25549647 | 25550344 | 25549647 | ID=Msa0064440-mRNA-1:exon:9112;Parent=Msa0064440-mRNA-1 |
| chr1_2 | exon | 25550771 | 25550961 | 25550771 | ID=Msa0064440-mRNA-1:exon:9113;Parent=Msa0064440-mRNA-1 |
| chr1_2 | exon | 25551491 | 25552148 | 25551491 | ID=Msa0064440-mRNA-1:exon:9114;Parent=Msa0064440-mRNA-1 |
| chr1_2 | five_prime_UTR | 25548024 | 25548099 | 25548024 | ID=Msa0064440-mRNA-1:five_prime_utr;Parent=Msa0064440-mRNA-1 |
| chr1_2 | CDS | 25548100 | 25548511 | 25548100 | ID=Msa0064440-mRNA-1:cds;Parent=Msa0064440-mRNA-1 |
| chr1_2 | CDS | 25549647 | 25550344 | 25549647 | ID=Msa0064440-mRNA-1:cds;Parent=Msa0064440-mRNA-1 |
| chr1_2 | CDS | 25550771 | 25550961 | 25550771 | ID=Msa0064440-mRNA-1:cds;Parent=Msa0064440-mRNA-1 |
| chr1_2 | CDS | 25551491 | 25551872 | 25551491 | ID=Msa0064440-mRNA-1:cds;Parent=Msa0064440-mRNA-1 |
| chr1_2 | three_prime_UTR | 25551873 | 25552148 | 25551873 | ID=Msa0064440-mRNA-1:three_prime_utr;Parent=Msa0064440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
