AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1446220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1446220 MtrunA17_Chr3g0136771 87.195 492 25 3 1 454 1 492 0.0 873
Msa1446220 MtrunA17_Chr4g0027961 26.905 420 219 13 96 454 90 482 1.51e-43 160
Msa1446220 MtrunA17_Chr8g0378671 25.000 444 214 13 84 454 67 464 1.89e-35 138
Msa1446220 MtrunA17_Chr8g0378721 24.942 433 205 12 96 454 79 465 7.10e-35 136
Msa1446220 MtrunA17_Chr8g0378701 32.218 239 130 7 84 301 81 308 3.27e-33 129
Msa1446220 MtrunA17_Chr1g0159921 30.000 170 107 5 97 264 208 367 1.00e-15 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1446220 AT2G24820.1 70.000 430 85 5 64 453 53 478 0.0 625
Msa1446220 AT3G44880.1 33.444 302 145 14 6 290 22 284 2.26e-34 135
Msa1446220 AT4G25650.1 26.730 419 214 15 96 450 79 468 3.54e-32 129
Msa1446220 AT4G25650.2 37.143 175 101 4 96 261 79 253 1.08e-29 122
Msa1446220 AT1G44446.3 29.944 177 109 6 99 270 218 384 7.77e-17 82.8
Msa1446220 AT1G44446.4 30.357 168 105 5 99 264 116 273 1.15e-16 82.4
Msa1446220 AT1G44446.2 30.357 168 105 5 99 264 218 375 1.25e-16 82.4
Msa1446220 AT1G44446.1 30.357 168 105 5 99 264 218 375 1.44e-16 82.4

Find 125 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATATCTATTTGCTAAATT+TGG 0.091375 tig0031290:+21059 None:intergenic
CTTTCAAAAGAATTTCATTT+TGG 0.099582 tig0031290:+21312 None:intergenic
TTTACCTTAAAATGAAAATT+TGG 0.181657 tig0031290:+23459 None:intergenic
GGGATTCTCAAGGTGTTATT+TGG 0.225677 tig0031290:-21863 Msa1446220:CDS
CACGGGATGCCATATCATTT+TGG 0.253652 tig0031290:-21200 Msa1446220:CDS
ATTTAGCAAATAGATATTTC+AGG 0.298772 tig0031290:-21055 Msa1446220:CDS
TATTCTACTGGAAAACTTGA+TGG 0.338578 tig0031290:-21724 Msa1446220:CDS
TCAGGAAACAGTTTCACTAT+TGG 0.342040 tig0031290:+21395 None:intergenic
ATGCAAAGCAAAATGAGTTT+TGG 0.346312 tig0031290:+23281 None:intergenic
GCACCTGCTGGACTTGTTGC+AGG 0.354157 tig0031290:-21131 Msa1446220:CDS
CCATTCCTCTTTCCAATCAT+AGG 0.358558 tig0031290:+23029 None:intergenic
GGATTCTCAAGGTGTTATTT+GGG 0.369826 tig0031290:-21862 Msa1446220:CDS
TCAATTACAGCAGGCTCTTT+AGG 0.378521 tig0031290:+21158 None:intergenic
AGTCCAAAGGAGTATTTGTT+TGG 0.385986 tig0031290:+23242 None:intergenic
TTCTGATGGAAGTACCATTC+AGG 0.391509 tig0031290:+21377 None:intergenic
GTTGAGATTGAAACTGAAAC+TGG 0.401389 tig0031290:+23209 None:intergenic
CGAACTGATAGAGGGTTTGC+AGG 0.406206 tig0031290:-21612 Msa1446220:CDS
AGTAGAATAGAATGATCATA+TGG 0.408492 tig0031290:+21738 None:intergenic
ATATGATCATTCTATTCTAC+TGG 0.410613 tig0031290:-21736 Msa1446220:CDS
TCTGAAGGCCAGTTGATTGA+TGG 0.416371 tig0031290:-22109 Msa1446220:CDS
CTCAAGGTGTTATTTGGGTA+TGG 0.419926 tig0031290:-21857 Msa1446220:CDS
ACCCCTGCGTTCTTGCTCAC+TGG 0.427222 tig0031290:+23068 None:intergenic
GTGCTGTGACCAAAATGATA+TGG 0.432114 tig0031290:+21191 None:intergenic
GAGAACTTGCAGCCTATGAT+TGG 0.435775 tig0031290:-23041 Msa1446220:CDS
CATCCAAACAAATACTCCTT+TGG 0.438298 tig0031290:-23245 Msa1446220:CDS
TAGAGGGTTTGCAGGTTGGT+GGG 0.438638 tig0031290:-21604 Msa1446220:CDS
GCTGCATCAACTGTACTTGA+TGG 0.444392 tig0031290:-23123 Msa1446220:CDS
CAAGCCTTCCATCAATCAAC+TGG 0.448979 tig0031290:+22101 None:intergenic
CGAATTGCCATCCATGATAC+AGG 0.448989 tig0031290:+22074 None:intergenic
TCTGTTCTATCATGCGAGAT+TGG 0.453393 tig0031290:+21687 None:intergenic
TTCAGGTATAGTTCCTTTGT+CGG 0.454673 tig0031290:+21281 None:intergenic
TGTCTGATGATCTTAAATTC+AGG 0.456895 tig0031290:+21264 None:intergenic
CAAAGGAGTATTTGTTTGGA+TGG 0.457186 tig0031290:+23246 None:intergenic
CTGATAGAGGGTTTGCAGGT+TGG 0.459478 tig0031290:-21608 Msa1446220:CDS
AAACCTTGCTTGCATTCTGA+TGG 0.468051 tig0031290:+21363 None:intergenic
TTGAAACTGAAACTGGAAGA+TGG 0.472271 tig0031290:+23216 None:intergenic
ATAGAGGGTTTGCAGGTTGG+TGG 0.475534 tig0031290:-21605 Msa1446220:CDS
TTTGAGAACTTTGCAAGGCC+AGG 0.480628 tig0031290:-21792 Msa1446220:CDS
TCAGCTTCCTCACCTGCAAA+GGG 0.482663 tig0031290:-21104 Msa1446220:CDS
GTAATTGAACATGCACCTGC+TGG 0.483939 tig0031290:-21143 Msa1446220:CDS
TCAAGTTTGAAAAGCTTTGA+CGG 0.485010 tig0031290:+21001 None:intergenic
ACACATGGGTTGCTGAATAC+AGG 0.486315 tig0031290:-21244 Msa1446220:CDS
GTGACAGAACGAACTGATAG+AGG 0.493826 tig0031290:-21621 Msa1446220:CDS
TAGTGAAACTGTTTCCTGAA+TGG 0.500632 tig0031290:-21391 Msa1446220:CDS
CTGCATCAACTGTACTTGAT+GGG 0.506544 tig0031290:-23122 Msa1446220:CDS
AGAGGGTTTGCAGGTTGGTG+GGG 0.507806 tig0031290:-21603 Msa1446220:CDS
ATCAGCTTCCTCACCTGCAA+AGG 0.509289 tig0031290:-21105 Msa1446220:CDS
TGTTCTTTGTAGGCTGGACA+AGG 0.518095 tig0031290:-21463 Msa1446220:intron
TGCGAGATTGGAATATGAGC+AGG 0.522604 tig0031290:+21699 None:intergenic
CATTCTTAGTGAGGTACAAA+GGG 0.524490 tig0031290:+23004 None:intergenic
CATGCTGATAGTGAGTGGTT+TGG 0.530173 tig0031290:-21434 Msa1446220:CDS
TTCAGTTTCAATCTCAACAA+AGG 0.530425 tig0031290:-23204 Msa1446220:CDS
ATGAAGATCGGTGTCCTCAC+AGG 0.533880 tig0031290:-22897 Msa1446220:intron
GAAAGAGAAGGTTCCGACAA+AGG 0.535987 tig0031290:-21294 Msa1446220:CDS
TTGATTTCACTCCATGGCGT+TGG 0.537003 tig0031290:-23325 Msa1446220:exon
AGCTTCCTCACCTGCAAAGG+GGG 0.537835 tig0031290:-21102 Msa1446220:CDS
AGGCTTGAATGCCTGTATCA+TGG 0.538330 tig0031290:-22085 Msa1446220:CDS
TGAAACTGAAACTGGAAGAT+GGG 0.541256 tig0031290:+23217 None:intergenic
TTGAGAACTTTGCAAGGCCA+GGG 0.544089 tig0031290:-21791 Msa1446220:CDS
CTGCGTTCTTGCTCACTGGA+AGG 0.546061 tig0031290:+23072 None:intergenic
AGGAGTATTTGTTTGGATGG+TGG 0.552067 tig0031290:+23249 None:intergenic
GTACCACACGATGCACCACT+TGG 0.552643 tig0031290:-22982 Msa1446220:CDS
CAAATGTCAGTAAAATACCT+TGG 0.554742 tig0031290:-21815 Msa1446220:CDS
ACATTCTTAGTGAGGTACAA+AGG 0.557836 tig0031290:+23003 None:intergenic
TGCCATCTTTAAACAAAACA+AGG 0.564133 tig0031290:+22938 None:intergenic
AGTCCTGCAACAAGTCCAGC+AGG 0.564418 tig0031290:+21128 None:intergenic
TCTCGCATGATAGAACAGAT+TGG 0.569347 tig0031290:-21683 Msa1446220:CDS
TACCTCTTGATTTCACTCCA+TGG 0.570579 tig0031290:-23331 Msa1446220:exon
TACAGCAGGCTCTTTAGGCA+AGG 0.570711 tig0031290:+21163 None:intergenic
GGATGGCAATTCGAAGGCGA+AGG 0.570725 tig0031290:-22064 Msa1446220:CDS
AGATTCAATGCTATGAAGAT+CGG 0.573811 tig0031290:-22909 Msa1446220:CDS
TCAAGCAGAAGAAAGCATGC+AGG 0.578242 tig0031290:-23174 Msa1446220:CDS
CTTCCATCAGAATGCAAGCA+AGG 0.579730 tig0031290:-21366 Msa1446220:CDS
GCTGATAGTGAGTGGTTTGG+AGG 0.579970 tig0031290:-21431 Msa1446220:CDS
GTTGAAACATCTTGAAACCC+TGG 0.581335 tig0031290:+21774 None:intergenic
CTTGCAAAGTTCTCAAACCA+AGG 0.582584 tig0031290:+21798 None:intergenic
GGTGCATGTTCAATTACAGC+AGG 0.585100 tig0031290:+21149 None:intergenic
AGAAGATCAGAAAGTTCTAG+TGG 0.585811 tig0031290:-23097 Msa1446220:CDS
GGGTTGCTGAATACAGGAAG+TGG 0.586558 tig0031290:-21238 Msa1446220:CDS
TTCCAGTGAGCAAGAACGCA+GGG 0.590208 tig0031290:-23070 Msa1446220:CDS
TGGAAGATGGGTTAGTCCAA+AGG 0.593475 tig0031290:+23229 None:intergenic
TGGATGGACAAAGTGGGACA+CGG 0.594552 tig0031290:-21218 Msa1446220:CDS
CCTATGATTGGAAAGAGGAA+TGG 0.595339 tig0031290:-23029 Msa1446220:CDS
TGTTAAAACATATGAAGTGA+GGG 0.595344 tig0031290:-21883 Msa1446220:CDS
CGCCATGGAGTGAAATCAAG+AGG 0.599770 tig0031290:+23329 None:intergenic
GTAGAATAGAATGATCATAT+GGG 0.601415 tig0031290:+21739 None:intergenic
TGCAGCCTATGATTGGAAAG+AGG 0.602118 tig0031290:-23034 Msa1446220:CDS
TATCATGGATGGCAATTCGA+AGG 0.603135 tig0031290:-22070 Msa1446220:CDS
AAGGCCAGTTGATTGATGGA+AGG 0.603495 tig0031290:-22105 Msa1446220:CDS
AGTATTTGTTTGGATGGTGG+AGG 0.603781 tig0031290:+23252 None:intergenic
CTTGGTTTGAGAACTTTGCA+AGG 0.608245 tig0031290:-21797 Msa1446220:CDS
ATTTAAGATCATCAGACACA+TGG 0.611628 tig0031290:-21259 Msa1446220:CDS
TGCTGAATACAGGAAGTGGA+TGG 0.613748 tig0031290:-21234 Msa1446220:CDS
AAATGGATTTACCAACGCCA+TGG 0.614476 tig0031290:+23314 None:intergenic
CTTCCAGTGAGCAAGAACGC+AGG 0.616535 tig0031290:-23071 Msa1446220:CDS
TGCATCAACTGTACTTGATG+GGG 0.616664 tig0031290:-23121 Msa1446220:CDS
TGCAGGGTATGTCACCGCCA+CGG 0.619960 tig0031290:-23157 Msa1446220:CDS
GGATGGACAAAGTGGGACAC+GGG 0.620612 tig0031290:-21217 Msa1446220:CDS
CAAACCACTCACTATCAGCA+TGG 0.623467 tig0031290:+21435 None:intergenic
CAAGCAGAAGAAAGCATGCA+GGG 0.625644 tig0031290:-23173 Msa1446220:CDS
GTGTTAAAACATATGAAGTG+AGG 0.626515 tig0031290:-21884 Msa1446220:CDS
GATGGCAATTCGAAGGCGAA+GGG 0.627130 tig0031290:-22063 Msa1446220:CDS
AGGTTAGCAAAACTATCTGA+AGG 0.627154 tig0031290:-22124 Msa1446220:CDS
CAGGAAGTGGATGGACAAAG+TGG 0.633627 tig0031290:-21225 Msa1446220:CDS
TTTAAGATCATCAGACACAT+GGG 0.641224 tig0031290:-21258 Msa1446220:CDS
GCTTCCTCACCTGCAAAGGG+GGG 0.641330 tig0031290:-21101 Msa1446220:CDS
GAAATGTGTGAAGATACCTC+AGG 0.642067 tig0031290:-22041 Msa1446220:intron
TGACAGAACGAACTGATAGA+GGG 0.642389 tig0031290:-21620 Msa1446220:CDS
TGCAGCTTTGACATCTGCCG+TGG 0.643956 tig0031290:+23140 None:intergenic
TTGAATGCCTGTATCATGGA+TGG 0.646528 tig0031290:-22081 Msa1446220:CDS
AGCTTTGACATCTGCCGTGG+CGG 0.646677 tig0031290:+23143 None:intergenic
GAAGATCAGAAAGTTCTAGT+GGG 0.652494 tig0031290:-23096 Msa1446220:CDS
AAATCCATGCTGATAGTGAG+TGG 0.657866 tig0031290:-21439 Msa1446220:CDS
GTTCTTTGTAGGCTGGACAA+GGG 0.664693 tig0031290:-21462 Msa1446220:intron
CGTGTGGTACATTCTTAGTG+AGG 0.668970 tig0031290:+22995 None:intergenic
TCAAACACTGTGAGACCAAG+TGG 0.669069 tig0031290:+22967 None:intergenic
AGGAAGTGGATGGACAAAGT+GGG 0.674817 tig0031290:-21224 Msa1446220:CDS
CAGCTTCCTCACCTGCAAAG+GGG 0.676647 tig0031290:-21103 Msa1446220:CDS
TATGAAGTGAGGGATTCTCA+AGG 0.679527 tig0031290:-21873 Msa1446220:CDS
TAAATTAAAACCAACCTGTG+AGG 0.684077 tig0031290:+22883 None:intergenic
AGACCAAGTGGTGCATCGTG+TGG 0.684416 tig0031290:+22979 None:intergenic
TGGTGGGGACGAGAGAAAGA+CGG 0.685767 tig0031290:-21588 Msa1446220:intron
TCCAGTGAGCAAGAACGCAG+GGG 0.708243 tig0031290:-23069 Msa1446220:CDS
AGTTTGAAAAGCTTTGACGG+CGG 0.714074 tig0031290:+21004 None:intergenic
GTAGTACTAGAAACTGATCG+AGG 0.751550 tig0031290:+23351 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTACCTTAAAATGAAAATT+TGG + tig0031290:21015-21034 None:intergenic 15.0%
!! AATTTGTAAGTAATTGAAAT+TGG + tig0031290:22147-22166 None:intergenic 15.0%
!!! TTTCAAAAGAATTTCATTTT+GGG + tig0031290:23161-23180 None:intergenic 15.0%
!!! AAATATCTATTTGCTAAATT+TGG + tig0031290:23415-23434 None:intergenic 15.0%
!! AATTATGAACTCTTACTTAT+GGG + tig0031290:21673-21692 None:intergenic 20.0%
!! AGATCTATATTACTCTATTT+AGG - tig0031290:21902-21921 Msa1446220:CDS 20.0%
!! TCTATTTAGGAATAAGATAT+TGG - tig0031290:21915-21934 Msa1446220:CDS 20.0%
!! ATTGGTATTAATAAAGTTAG+TGG - tig0031290:21933-21952 Msa1446220:intron 20.0%
!! TTAATATTTGTATCTTTCCT+AGG - tig0031290:22081-22100 Msa1446220:CDS 20.0%
!! ACATACTATCATTATTCATT+AGG + tig0031290:22123-22142 None:intergenic 20.0%
!!! CTTTCAAAAGAATTTCATTT+TGG + tig0031290:23162-23181 None:intergenic 20.0%
!! ATTTAGCAAATAGATATTTC+AGG - tig0031290:23416-23435 Msa1446220:five_prime_UTR 20.0%
!! GTGTCCAAATTTTCATTTTA+AGG - tig0031290:21008-21027 Msa1446220:CDS 25.0%
!! AAAGAATCAGCAATATTTTG+TGG - tig0031290:21033-21052 Msa1446220:CDS 25.0%
!! AAGAAAGAAGAGATACTTTT+AGG + tig0031290:21098-21117 None:intergenic 25.0%
!!! AACCTTGTTTTGTTTAAAGA+TGG - tig0031290:21531-21550 Msa1446220:intron 25.0%
! CAATTATGAACTCTTACTTA+TGG + tig0031290:21674-21693 None:intergenic 25.0%
! AAAAAATAAACCCGAACATT+AGG + tig0031290:21818-21837 None:intergenic 25.0%
! ATAAATATTCTCACGTTAAC+TGG - tig0031290:22208-22227 Msa1446220:intron 25.0%
! ATCAAACCATCTAAATTGAT+TGG - tig0031290:22250-22269 Msa1446220:intron 25.0%
! CCTGAATCATGTAAAATATA+AGG + tig0031290:22330-22349 None:intergenic 25.0%
!! CCTTATATTTTACATGATTC+AGG - tig0031290:22327-22346 Msa1446220:intron 25.0%
! TATAAGGACATTCATGATAT+AGG + tig0031290:22484-22503 None:intergenic 25.0%
! ATATCATGAATGTCCTTATA+TGG - tig0031290:22484-22503 Msa1446220:intron 25.0%
! TGTTAAAACATATGAAGTGA+GGG - tig0031290:22588-22607 Msa1446220:intron 25.0%
! GTAGAATAGAATGATCATAT+GGG + tig0031290:22735-22754 None:intergenic 25.0%
! AGTAGAATAGAATGATCATA+TGG + tig0031290:22736-22755 None:intergenic 25.0%
! ATATGATCATTCTATTCTAC+TGG - tig0031290:22735-22754 Msa1446220:intron 25.0%
! TTGTGTTCTACAAAATAACA+GGG - tig0031290:22939-22958 Msa1446220:CDS 25.0%
! AGGGAAATTGTAGATAAAAA+TGG - tig0031290:22958-22977 Msa1446220:CDS 25.0%
!!! TGAAATTCTTTTGAAAGAGA+AGG - tig0031290:23165-23184 Msa1446220:CDS 25.0%
!! AAGAAGAGATACTTTTAGGT+GGG + tig0031290:21094-21113 None:intergenic 30.0%
! AAAGAAGAGATACTTTTAGG+TGG + tig0031290:21095-21114 None:intergenic 30.0%
!! AAAGCAAAATGAGTTTTGGT+GGG + tig0031290:21189-21208 None:intergenic 30.0%
! ATGCAAAGCAAAATGAGTTT+TGG + tig0031290:21193-21212 None:intergenic 30.0%
TTCAGTTTCAATCTCAACAA+AGG - tig0031290:21267-21286 Msa1446220:CDS 30.0%
TGCCATCTTTAAACAAAACA+AGG + tig0031290:21536-21555 None:intergenic 30.0%
AGATTCAATGCTATGAAGAT+CGG - tig0031290:21562-21581 Msa1446220:intron 30.0%
TAAATTAAAACCAACCTGTG+AGG + tig0031290:21591-21610 None:intergenic 30.0%
! TTGAGTTTGATTTCACATCA+TGG + tig0031290:21845-21864 None:intergenic 30.0%
ATGATGTGAAATCAAACTCA+AGG - tig0031290:21844-21863 Msa1446220:CDS 30.0%
TCATTATCAGACAAACACAT+TGG + tig0031290:21883-21902 None:intergenic 30.0%
CAGTAGCAGTATTGTAAATA+AGG + tig0031290:21991-22010 None:intergenic 30.0%
TACTTGCCAATCAATTTAGA+TGG + tig0031290:22259-22278 None:intergenic 30.0%
! TTTTATTCCTTTCACAATGC+TGG - tig0031290:22298-22317 Msa1446220:intron 30.0%
TGTTAGCATCAAACCATATA+AGG + tig0031290:22500-22519 None:intergenic 30.0%
!!! CACTTCATATGTTTTAACAC+AGG + tig0031290:22587-22606 None:intergenic 30.0%
GTGTTAAAACATATGAAGTG+AGG - tig0031290:22587-22606 Msa1446220:intron 30.0%
!! CAAGGTATTTTACTGACATT+TGG + tig0031290:22658-22677 None:intergenic 30.0%
CAAATGTCAGTAAAATACCT+TGG - tig0031290:22656-22675 Msa1446220:intron 30.0%
TATTCTACTGGAAAACTTGA+TGG - tig0031290:22747-22766 Msa1446220:intron 30.0%
!!! CTGTTATTTTGTAGAACACA+AGG + tig0031290:22940-22959 None:intergenic 30.0%
CTTGTGTTCTACAAAATAAC+AGG - tig0031290:22938-22957 Msa1446220:CDS 30.0%
TGGTGAAATAAATACTTCAG+TGG - tig0031290:22978-22997 Msa1446220:CDS 30.0%
! AAGGTTTTTGAACAAGACAT+GGG - tig0031290:23124-23143 Msa1446220:CDS 30.0%
TGTCTGATGATCTTAAATTC+AGG + tig0031290:23210-23229 None:intergenic 30.0%
! ATTTAAGATCATCAGACACA+TGG - tig0031290:23212-23231 Msa1446220:CDS 30.0%
! TTTAAGATCATCAGACACAT+GGG - tig0031290:23213-23232 Msa1446220:CDS 30.0%
! TCAAGTTTGAAAAGCTTTGA+CGG + tig0031290:23473-23492 None:intergenic 30.0%
!! AAGCAAAATGAGTTTTGGTG+GGG + tig0031290:21188-21207 None:intergenic 35.0%
!! CAAAGCAAAATGAGTTTTGG+TGG + tig0031290:21190-21209 None:intergenic 35.0%
!! CAAAGGAGTATTTGTTTGGA+TGG + tig0031290:21228-21247 None:intergenic 35.0%
CATCCAAACAAATACTCCTT+TGG - tig0031290:21226-21245 Msa1446220:CDS 35.0%
!! AGTCCAAAGGAGTATTTGTT+TGG + tig0031290:21232-21251 None:intergenic 35.0%
TGAAACTGAAACTGGAAGAT+GGG + tig0031290:21257-21276 None:intergenic 35.0%
TTGAAACTGAAACTGGAAGA+TGG + tig0031290:21258-21277 None:intergenic 35.0%
GTTGAGATTGAAACTGAAAC+TGG + tig0031290:21265-21284 None:intergenic 35.0%
! AGAAGATCAGAAAGTTCTAG+TGG - tig0031290:21374-21393 Msa1446220:CDS 35.0%
! GAAGATCAGAAAGTTCTAGT+GGG - tig0031290:21375-21394 Msa1446220:CDS 35.0%
CATTCTTAGTGAGGTACAAA+GGG + tig0031290:21470-21489 None:intergenic 35.0%
ACATTCTTAGTGAGGTACAA+AGG + tig0031290:21471-21490 None:intergenic 35.0%
AATCACATAGCATGCAACTT+TGG + tig0031290:21703-21722 None:intergenic 35.0%
AGGTTAGCAAAACTATCTGA+AGG - tig0031290:22347-22366 Msa1446220:intron 35.0%
!! GGATTCTCAAGGTGTTATTT+GGG - tig0031290:22609-22628 Msa1446220:intron 35.0%
! GGTATTTTACTGACATTTGG+AGG + tig0031290:22655-22674 None:intergenic 35.0%
GTACTAAGCCTAACTTCTTA+CGG - tig0031290:22905-22924 Msa1446220:CDS 35.0%
TCAGGAAACAGTTTCACTAT+TGG + tig0031290:23079-23098 None:intergenic 35.0%
TAGTGAAACTGTTTCCTGAA+TGG - tig0031290:23080-23099 Msa1446220:CDS 35.0%
! CAAGGTTTTTGAACAAGACA+TGG - tig0031290:23123-23142 Msa1446220:CDS 35.0%
TTCAGGTATAGTTCCTTTGT+CGG + tig0031290:23193-23212 None:intergenic 35.0%
GTAGTACTAGAAACTGATCG+AGG + tig0031290:21123-21142 None:intergenic 40.0%
TACCTCTTGATTTCACTCCA+TGG - tig0031290:21140-21159 Msa1446220:CDS 40.0%
! AAATGGATTTACCAACGCCA+TGG + tig0031290:21160-21179 None:intergenic 40.0%
! AGTATTTGTTTGGATGGTGG+AGG + tig0031290:21222-21241 None:intergenic 40.0%
!! AGGAGTATTTGTTTGGATGG+TGG + tig0031290:21225-21244 None:intergenic 40.0%
CTGCATCAACTGTACTTGAT+GGG - tig0031290:21349-21368 Msa1446220:CDS 40.0%
TGCATCAACTGTACTTGATG+GGG - tig0031290:21350-21369 Msa1446220:CDS 40.0%
CCATTCCTCTTTCCAATCAT+AGG + tig0031290:21445-21464 None:intergenic 40.0%
CCTATGATTGGAAAGAGGAA+TGG - tig0031290:21442-21461 Msa1446220:CDS 40.0%
CTTGTAGTGCTCCTAATGTT+CGG - tig0031290:21804-21823 Msa1446220:CDS 40.0%
TTGTAGTGCTCCTAATGTTC+GGG - tig0031290:21805-21824 Msa1446220:CDS 40.0%
CATGAAAACTACTAGCACAG+GGG + tig0031290:22171-22190 None:intergenic 40.0%
CCATGAAAACTACTAGCACA+GGG + tig0031290:22172-22191 None:intergenic 40.0%
! CCTGTGCTAGTAGTTTTCAT+GGG - tig0031290:22170-22189 Msa1446220:intron 40.0%
TTGAATGCCTGTATCATGGA+TGG - tig0031290:22390-22409 Msa1446220:intron 40.0%
TATCATGGATGGCAATTCGA+AGG - tig0031290:22401-22420 Msa1446220:intron 40.0%
GAAATGTGTGAAGATACCTC+AGG - tig0031290:22430-22449 Msa1446220:intron 40.0%
TATGAAGTGAGGGATTCTCA+AGG - tig0031290:22598-22617 Msa1446220:intron 40.0%
!! GGGATTCTCAAGGTGTTATT+TGG - tig0031290:22608-22627 Msa1446220:intron 40.0%
!! CTCAAGGTGTTATTTGGGTA+TGG - tig0031290:22614-22633 Msa1446220:intron 40.0%
CTTGCAAAGTTCTCAAACCA+AGG + tig0031290:22676-22695 None:intergenic 40.0%
! CTTGGTTTGAGAACTTTGCA+AGG - tig0031290:22674-22693 Msa1446220:intron 40.0%
GTTGAAACATCTTGAAACCC+TGG + tig0031290:22700-22719 None:intergenic 40.0%
TCTGTTCTATCATGCGAGAT+TGG + tig0031290:22787-22806 None:intergenic 40.0%
TCTCGCATGATAGAACAGAT+TGG - tig0031290:22788-22807 Msa1446220:intron 40.0%
TCTGTCACCTCAAAAAGTAG+CGG + tig0031290:22838-22857 None:intergenic 40.0%
TGACAGAACGAACTGATAGA+GGG - tig0031290:22851-22870 Msa1446220:intron 40.0%
! TGGTCTGTCTTGTTCTTTGT+AGG - tig0031290:22998-23017 Msa1446220:CDS 40.0%
! AAATCCATGCTGATAGTGAG+TGG - tig0031290:23032-23051 Msa1446220:CDS 40.0%
!! TTCTGATGGAAGTACCATTC+AGG + tig0031290:23097-23116 None:intergenic 40.0%
AAACCTTGCTTGCATTCTGA+TGG + tig0031290:23111-23130 None:intergenic 40.0%
GTGCTGTGACCAAAATGATA+TGG + tig0031290:23283-23302 None:intergenic 40.0%
TCAATTACAGCAGGCTCTTT+AGG + tig0031290:23316-23335 None:intergenic 40.0%
! AGTTTGAAAAGCTTTGACGG+CGG + tig0031290:23470-23489 None:intergenic 40.0%
!! TACTTTTAGGTGGGTGTGTG+TGG + tig0031290:21085-21104 None:intergenic 45.0%
TTGATTTCACTCCATGGCGT+TGG - tig0031290:21146-21165 Msa1446220:CDS 45.0%
!! GTTTTGGTGGGGAGAAGAAA+TGG + tig0031290:21177-21196 None:intergenic 45.0%
!! TGGAAGATGGGTTAGTCCAA+AGG + tig0031290:21245-21264 None:intergenic 45.0%
! TCAAGCAGAAGAAAGCATGC+AGG - tig0031290:21297-21316 Msa1446220:CDS 45.0%
! CAAGCAGAAGAAAGCATGCA+GGG - tig0031290:21298-21317 Msa1446220:CDS 45.0%
GCTGCATCAACTGTACTTGA+TGG - tig0031290:21348-21367 Msa1446220:CDS 45.0%
GAGAACTTGCAGCCTATGAT+TGG - tig0031290:21430-21449 Msa1446220:CDS 45.0%
TGCAGCCTATGATTGGAAAG+AGG - tig0031290:21437-21456 Msa1446220:CDS 45.0%
CGTGTGGTACATTCTTAGTG+AGG + tig0031290:21479-21498 None:intergenic 45.0%
TCAAACACTGTGAGACCAAG+TGG + tig0031290:21507-21526 None:intergenic 45.0%
ACAATACTGCTACTGCTGAC+AGG - tig0031290:21996-22015 Msa1446220:intron 45.0%
GTGAACTTAGTGACTGTCCT+AGG + tig0031290:22101-22120 None:intergenic 45.0%
! CCCTGTGCTAGTAGTTTTCA+TGG - tig0031290:22169-22188 Msa1446220:intron 45.0%
CCCATGAAAACTACTAGCAC+AGG + tig0031290:22173-22192 None:intergenic 45.0%
TTCCTTTCACAATGCTGGAC+TGG - tig0031290:22303-22322 Msa1446220:intron 45.0%
TCTGAAGGCCAGTTGATTGA+TGG - tig0031290:22362-22381 Msa1446220:intron 45.0%
AAGGCCAGTTGATTGATGGA+AGG - tig0031290:22366-22385 Msa1446220:intron 45.0%
CAAGCCTTCCATCAATCAAC+TGG + tig0031290:22373-22392 None:intergenic 45.0%
AGGCTTGAATGCCTGTATCA+TGG - tig0031290:22386-22405 Msa1446220:intron 45.0%
CGAATTGCCATCCATGATAC+AGG + tig0031290:22400-22419 None:intergenic 45.0%
TGTGTGAAGATACCTCAGGT+AGG - tig0031290:22434-22453 Msa1446220:intron 45.0%
TAAAGTCAGTAGCCTACCTG+AGG + tig0031290:22449-22468 None:intergenic 45.0%
! CTGGGAATTTTTGCATCAGC+TGG + tig0031290:22559-22578 None:intergenic 45.0%
CAGCTGATGCAAAAATTCCC+AGG - tig0031290:22557-22576 Msa1446220:intron 45.0%
!! GTTTTAACACAGGCTGACCT+GGG + tig0031290:22577-22596 None:intergenic 45.0%
!!! TGTTTTAACACAGGCTGACC+TGG + tig0031290:22578-22597 None:intergenic 45.0%
TTTGAGAACTTTGCAAGGCC+AGG - tig0031290:22679-22698 Msa1446220:intron 45.0%
TTGAGAACTTTGCAAGGCCA+GGG - tig0031290:22680-22699 Msa1446220:intron 45.0%
TGCGAGATTGGAATATGAGC+AGG + tig0031290:22775-22794 None:intergenic 45.0%
!!! TGCACAACCGCTACTTTTTG+AGG - tig0031290:22828-22847 Msa1446220:intron 45.0%
GTGACAGAACGAACTGATAG+AGG - tig0031290:22850-22869 Msa1446220:intron 45.0%
GCCTAACTTCTTACGGTTTG+AGG - tig0031290:22912-22931 Msa1446220:CDS 45.0%
GCCTCAAACCGTAAGAAGTT+AGG + tig0031290:22916-22935 None:intergenic 45.0%
! CTGTCTTGTTCTTTGTAGGC+TGG - tig0031290:23002-23021 Msa1446220:CDS 45.0%
TGTTCTTTGTAGGCTGGACA+AGG - tig0031290:23008-23027 Msa1446220:CDS 45.0%
GTTCTTTGTAGGCTGGACAA+GGG - tig0031290:23009-23028 Msa1446220:CDS 45.0%
CAAACCACTCACTATCAGCA+TGG + tig0031290:23039-23058 None:intergenic 45.0%
! CATGCTGATAGTGAGTGGTT+TGG - tig0031290:23037-23056 Msa1446220:CDS 45.0%
CTTCCATCAGAATGCAAGCA+AGG - tig0031290:23105-23124 Msa1446220:CDS 45.0%
GAAAGAGAAGGTTCCGACAA+AGG - tig0031290:23177-23196 Msa1446220:CDS 45.0%
! ACACATGGGTTGCTGAATAC+AGG - tig0031290:23227-23246 Msa1446220:CDS 45.0%
TGCTGAATACAGGAAGTGGA+TGG - tig0031290:23237-23256 Msa1446220:CDS 45.0%
AGGAAGTGGATGGACAAAGT+GGG - tig0031290:23247-23266 Msa1446220:CDS 45.0%
! CACGGGATGCCATATCATTT+TGG - tig0031290:23271-23290 Msa1446220:CDS 45.0%
GGTGCATGTTCAATTACAGC+AGG + tig0031290:23325-23344 None:intergenic 45.0%
GTAATTGAACATGCACCTGC+TGG - tig0031290:23328-23347 Msa1446220:exon 45.0%
CGCCATGGAGTGAAATCAAG+AGG + tig0031290:21145-21164 None:intergenic 50.0%
TTCCAGTGAGCAAGAACGCA+GGG - tig0031290:21401-21420 Msa1446220:CDS 50.0%
! ATGAAGATCGGTGTCCTCAC+AGG - tig0031290:21574-21593 Msa1446220:intron 50.0%
ATACTGCTACTGCTGACAGG+AGG - tig0031290:21999-22018 Msa1446220:intron 50.0%
GTCCAGTCCAGCATTGTGAA+AGG + tig0031290:22308-22327 None:intergenic 50.0%
GATGGCAATTCGAAGGCGAA+GGG - tig0031290:22408-22427 Msa1446220:intron 50.0%
CGAACTGATAGAGGGTTTGC+AGG - tig0031290:22859-22878 Msa1446220:intron 50.0%
CTGATAGAGGGTTTGCAGGT+TGG - tig0031290:22863-22882 Msa1446220:intron 50.0%
! ATAGAGGGTTTGCAGGTTGG+TGG - tig0031290:22866-22885 Msa1446220:intron 50.0%
!! TAGAGGGTTTGCAGGTTGGT+GGG - tig0031290:22867-22886 Msa1446220:intron 50.0%
! GCTGATAGTGAGTGGTTTGG+AGG - tig0031290:23040-23059 Msa1446220:CDS 50.0%
GGGTTGCTGAATACAGGAAG+TGG - tig0031290:23233-23252 Msa1446220:CDS 50.0%
CAGGAAGTGGATGGACAAAG+TGG - tig0031290:23246-23265 Msa1446220:CDS 50.0%
TGGATGGACAAAGTGGGACA+CGG - tig0031290:23253-23272 Msa1446220:CDS 50.0%
TACAGCAGGCTCTTTAGGCA+AGG + tig0031290:23311-23330 None:intergenic 50.0%
ATCAGCTTCCTCACCTGCAA+AGG - tig0031290:23366-23385 Msa1446220:five_prime_UTR 50.0%
TCAGCTTCCTCACCTGCAAA+GGG - tig0031290:23367-23386 Msa1446220:five_prime_UTR 50.0%
! AGCTTTGACATCTGCCGTGG+CGG + tig0031290:21331-21350 None:intergenic 55.0%
! TGCAGCTTTGACATCTGCCG+TGG + tig0031290:21334-21353 None:intergenic 55.0%
CTGCGTTCTTGCTCACTGGA+AGG + tig0031290:21402-21421 None:intergenic 55.0%
CTTCCAGTGAGCAAGAACGC+AGG - tig0031290:21400-21419 Msa1446220:CDS 55.0%
TCCAGTGAGCAAGAACGCAG+GGG - tig0031290:21402-21421 Msa1446220:CDS 55.0%
GTACCACACGATGCACCACT+TGG - tig0031290:21489-21508 Msa1446220:intron 55.0%
AGACCAAGTGGTGCATCGTG+TGG + tig0031290:21495-21514 None:intergenic 55.0%
! AGATCGGTGTCCTCACAGGT+TGG - tig0031290:21578-21597 Msa1446220:intron 55.0%
CTACTGCTGACAGGAGGCTA+GGG - tig0031290:22005-22024 Msa1446220:intron 55.0%
GGATGGCAATTCGAAGGCGA+AGG - tig0031290:22407-22426 Msa1446220:intron 55.0%
!! AGAGGGTTTGCAGGTTGGTG+GGG - tig0031290:22868-22887 Msa1446220:intron 55.0%
TGGTGGGGACGAGAGAAAGA+CGG - tig0031290:22883-22902 Msa1446220:intron 55.0%
GGATGGACAAAGTGGGACAC+GGG - tig0031290:23254-23273 Msa1446220:CDS 55.0%
AGTCCTGCAACAAGTCCAGC+AGG + tig0031290:23346-23365 None:intergenic 55.0%
CAGCTTCCTCACCTGCAAAG+GGG - tig0031290:23368-23387 Msa1446220:five_prime_UTR 55.0%
AGCTTCCTCACCTGCAAAGG+GGG - tig0031290:23369-23388 Msa1446220:five_prime_UTR 55.0%
TGCAGGGTATGTCACCGCCA+CGG - tig0031290:21314-21333 Msa1446220:CDS 60.0%
ACCCCTGCGTTCTTGCTCAC+TGG + tig0031290:21406-21425 None:intergenic 60.0%
GCTACTGCTGACAGGAGGCT+AGG - tig0031290:22004-22023 Msa1446220:intron 60.0%
!! GCACCTGCTGGACTTGTTGC+AGG - tig0031290:23340-23359 Msa1446220:five_prime_UTR 60.0%
GCTTCCTCACCTGCAAAGGG+GGG - tig0031290:23370-23389 Msa1446220:five_prime_UTR 60.0%
AATGCCCCCCTTTGCAGGTG+AGG + tig0031290:23377-23396 None:intergenic 60.0%
! TCACCTGCAAAGGGGGGCAT+TGG - tig0031290:23376-23395 Msa1446220:five_prime_UTR 60.0%
!! CACCTGCAAAGGGGGGCATT+GGG - tig0031290:23377-23396 Msa1446220:five_prime_UTR 60.0%
GTCCCAATGCCCCCCTTTGC+AGG + tig0031290:23382-23401 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0031290 gene 21001 23492 21001 ID=Msa1446220;Name=Msa1446220
tig0031290 mRNA 21001 23492 21001 ID=Msa1446220-mRNA-1;Parent=Msa1446220;Name=Msa1446220-mRNA-1;_AED=0.13;_eAED=0.13;_QI=158|0.66|0.5|1|1|1|4|0|454
tig0031290 exon 21001 21473 21001 ID=Msa1446220-mRNA-1:exon:15354;Parent=Msa1446220-mRNA-1
tig0031290 exon 21589 21940 21589 ID=Msa1446220-mRNA-1:exon:15353;Parent=Msa1446220-mRNA-1
tig0031290 exon 22042 22144 22042 ID=Msa1446220-mRNA-1:exon:15352;Parent=Msa1446220-mRNA-1
tig0031290 exon 22898 23492 22898 ID=Msa1446220-mRNA-1:exon:15351;Parent=Msa1446220-mRNA-1
tig0031290 five_prime_UTR 23335 23492 23335 ID=Msa1446220-mRNA-1:five_prime_utr;Parent=Msa1446220-mRNA-1
tig0031290 CDS 22898 23334 22898 ID=Msa1446220-mRNA-1:cds;Parent=Msa1446220-mRNA-1
tig0031290 CDS 22042 22144 22042 ID=Msa1446220-mRNA-1:cds;Parent=Msa1446220-mRNA-1
tig0031290 CDS 21589 21940 21589 ID=Msa1446220-mRNA-1:cds;Parent=Msa1446220-mRNA-1
tig0031290 CDS 21001 21473 21001 ID=Msa1446220-mRNA-1:cds;Parent=Msa1446220-mRNA-1
Gene Sequence

>Msa1446220

ATGGCGTTGGTAAATCCATTTCTTCTCCCCACCAAAACTCATTTTGCTTTGCATGTTTCACCTCCACCATCCAAACAAATACTCCTTTGGACTAACCCATCTTCCAGTTTCAGTTTCAATCTCAACAAAGGCTTGTCATCAAGCAGAAGAAAGCATGCAGGGTATGTCACCGCCACGGCAGATGTCAAAGCTGCATCAACTGTACTTGATGGGGAAGAAGATCAGAAAGTTCTAGTGGGACCTTCCAGTGAGCAAGAACGCAGGGGTGAGAGAGAACTTGCAGCCTATGATTGGAAAGAGGAATGGTACCCTTTGTACCTCACTAAGAATGTACCACACGATGCACCACTTGGTCTCACAGTGTTTGACAAGAACCTTGTTTTGTTTAAAGATGGCAATGATCAGATTCAATGCTATGAAGATCGGTGTCCTCACAGGTTAGCAAAACTATCTGAAGGCCAGTTGATTGATGGAAGGCTTGAATGCCTGTATCATGGATGGCAATTCGAAGGCGAAGGGAAATGTGTGAAGATACCTCAGCTTCCAGCTGATGCAAAAATTCCCAGGTCAGCCTGTGTTAAAACATATGAAGTGAGGGATTCTCAAGGTGTTATTTGGGTATGGATGTCACAAAAGATACCTCCAAATGTCAGTAAAATACCTTGGTTTGAGAACTTTGCAAGGCCAGGGTTTCAAGATGTTTCAACAACTCATGAACTCCCATATGATCATTCTATTCTACTGGAAAACTTGATGGATCCTGCTCATATTCCAATCTCGCATGATAGAACAGATTGGACTGCAAAGAGAGAAGATGCACAACCGCTACTTTTTGAGGTGACAGAACGAACTGATAGAGGGTTTGCAGGTTGGTGGGGACGAGAGAAAGACGGCTGGACAAGGGAAATCCATGCTGATAGTGAGTGGTTTGGAGGAACAAAAAGATCTCCAATAGTGAAACTGTTTCCTGAATGGTACTTCCATCAGAATGCAAGCAAGGTTTTTGAACAAGACATGGGATTCTTATCATCCCAAAATGAAATTCTTTTGAAAGAGAAGGTTCCGACAAAGGAACTATACCTGAATTTAAGATCATCAGACACATGGGTTGCTGAATACAGGAAGTGGATGGACAAAGTGGGACACGGGATGCCATATCATTTTGGTCACAGCACTATTTCCTTGCCTAAAGAGCCTGCTGTAATTGAACATGCACCTGCTGGACTTGTTGCAGGACTATCAGCTTCCTCACCTGCAAAGGGGGGCATTGGGACAATGCATGCTCCAAATTTAGCAAATAGATATTTCAGGCATGTAATACATTGCAATGCATGTAGAACCGCCGTCAAAGCTTTTCAAACTTGA

Protein sequence

>Msa1446220

MALVNPFLLPTKTHFALHVSPPPSKQILLWTNPSSSFSFNLNKGLSSSRRKHAGYVTATADVKAASTVLDGEEDQKVLVGPSSEQERRGERELAAYDWKEEWYPLYLTKNVPHDAPLGLTVFDKNLVLFKDGNDQIQCYEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVKTYEVRDSQGVIWVWMSQKIPPNVSKIPWFENFARPGFQDVSTTHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLLFEVTERTDRGFAGWWGREKDGWTREIHADSEWFGGTKRSPIVKLFPEWYFHQNASKVFEQDMGFLSSQNEILLKEKVPTKELYLNLRSSDTWVAEYRKWMDKVGHGMPYHFGHSTISLPKEPAVIEHAPAGLVAGLSASSPAKGGIGTMHAPNLANRYFRHVIHCNACRTAVKAFQT*