AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0510510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510510 MtrunA17_Chr3g0116631 89.153 295 24 3 1 291 1 291 0.0 521
Msa0510510 MtrunA17_Chr4g0058151 59.091 308 96 7 1 288 1 298 1.05e-109 320
Msa0510510 MtrunA17_Chr1g0181111 42.953 298 125 6 14 288 3 278 1.04e-58 189
Msa0510510 MtrunA17_Chr7g0267571 36.237 287 155 9 12 285 20 291 8.05e-44 151
Msa0510510 MtrunA17_Chr7g0267571 38.202 89 53 1 102 190 207 293 5.09e-12 65.5
Msa0510510 MtrunA17_Chr1g0168601 43.452 168 79 3 121 285 78 232 6.16e-41 142
Msa0510510 MtrunA17_Chr1g0168601 43.023 86 49 0 105 190 149 234 3.20e-14 70.5
Msa0510510 MtrunA17_Chr1g0177101 38.251 183 111 1 104 284 103 285 3.71e-39 139
Msa0510510 MtrunA17_Chr3g0087481 38.542 192 108 2 97 282 48 235 6.33e-35 126
Msa0510510 MtrunA17_Chr3g0087481 44.444 81 44 1 204 283 57 137 1.02e-15 74.7
Msa0510510 MtrunA17_Chr4g0035001 54.545 77 35 0 207 283 7 83 1.35e-25 99.8
Msa0510510 MtrunA17_Chr4g0035001 42.308 78 45 0 108 185 5 82 3.51e-14 68.9
Msa0510510 MtrunA17_Chr4g0058141 46.154 104 54 2 152 254 2 104 2.91e-24 94.4
Msa0510510 MtrunA17_Chr4g0035051 49.351 77 39 0 207 283 9 85 2.12e-23 92.4
Msa0510510 MtrunA17_Chr4g0035051 37.864 103 57 1 108 210 7 102 1.17e-14 68.9
Msa0510510 MtrunA17_Chr5g0411091 39.106 179 104 4 111 287 98 273 3.02e-23 97.1
Msa0510510 MtrunA17_Chr3g0132451 33.333 174 107 5 110 280 90 257 3.46e-23 96.3
Msa0510510 MtrunA17_Chr3g0110211 33.503 197 115 3 94 289 15 196 4.76e-23 97.4
Msa0510510 MtrunA17_Chr4g0061451 47.619 84 44 0 204 287 40 123 1.61e-22 94.4
Msa0510510 MtrunA17_Chr4g0061451 44.304 79 44 0 110 188 43 121 1.22e-14 72.4
Msa0510510 MtrunA17_Chr4g0035031 50.649 77 38 0 207 283 9 85 2.63e-21 89.0
Msa0510510 MtrunA17_Chr4g0035031 41.250 80 47 0 108 187 7 86 7.05e-14 68.9
Msa0510510 MtrunA17_Chr2g0328791 32.967 182 113 4 111 289 17 192 8.54e-21 91.7
Msa0510510 MtrunA17_Chr4g0070231 33.140 172 103 2 111 282 48 207 2.63e-20 90.1
Msa0510510 MtrunA17_Chr4g0070231 27.179 195 114 3 110 280 132 322 9.68e-12 65.1
Msa0510510 MtrunA17_Chr3g0121631 50.000 80 39 1 207 286 37 115 2.99e-20 85.1
Msa0510510 MtrunA17_Chr3g0121631 38.043 92 56 1 97 188 24 114 1.14e-12 64.3
Msa0510510 MtrunA17_Chr4g0074711 30.526 190 119 4 103 285 64 247 3.22e-20 89.7
Msa0510510 MtrunA17_Chr4g0074711 27.174 184 110 5 111 280 169 342 1.21e-12 67.8
Msa0510510 MtrunA17_Chr2g0288251 29.949 197 122 5 100 285 44 235 3.80e-20 89.7
Msa0510510 MtrunA17_Chr2g0288251 29.282 181 109 4 111 280 157 329 1.95e-13 70.1
Msa0510510 MtrunA17_Chr4g0045221 34.021 194 113 7 106 290 112 299 4.51e-20 89.7
Msa0510510 MtrunA17_Chr3g0086861 45.263 95 50 1 197 289 33 127 5.29e-20 89.4
Msa0510510 MtrunA17_Chr3g0086861 46.753 77 41 0 110 186 45 121 2.92e-14 72.8
Msa0510510 MtrunA17_Chr3g0119311 44.444 81 45 0 207 287 37 117 5.56e-20 84.0
Msa0510510 MtrunA17_Chr3g0120721 27.222 180 120 3 109 288 18 186 5.57e-19 85.9
Msa0510510 MtrunA17_Chr7g0219021 40.964 83 49 0 207 289 41 123 9.72e-19 83.6
Msa0510510 MtrunA17_Chr7g0219021 44.048 84 46 1 109 192 40 122 1.27e-14 72.0
Msa0510510 MtrunA17_Chr6g0466451 33.333 195 115 6 106 288 102 293 2.62e-18 84.7
Msa0510510 MtrunA17_Chr6g0466451 28.729 181 120 4 109 288 15 187 1.14e-11 65.1
Msa0510510 MtrunA17_Chr6g0465631 33.333 195 115 6 106 288 102 293 2.67e-18 84.7
Msa0510510 MtrunA17_Chr6g0465631 28.729 181 120 4 109 288 15 187 1.15e-11 65.1
Msa0510510 MtrunA17_Chr3g0101061 32.222 180 112 4 109 282 40 215 3.28e-18 84.3
Msa0510510 MtrunA17_Chr3g0101061 36.709 79 48 1 207 285 41 117 5.01e-11 63.2
Msa0510510 MtrunA17_Chr6g0466501 30.526 190 110 4 107 290 23 196 4.55e-18 84.3
Msa0510510 MtrunA17_Chr6g0466501 30.570 193 120 6 106 288 197 385 3.17e-16 78.6
Msa0510510 MtrunA17_Chr6g0466501 27.624 181 119 5 109 288 113 282 3.86e-11 63.5
Msa0510510 MtrunA17_Chr2g0278661 47.436 78 41 0 206 283 7 84 5.39e-18 81.3
Msa0510510 MtrunA17_Chr2g0278661 39.286 84 51 0 107 190 5 88 1.45e-13 68.9
Msa0510510 MtrunA17_Chr3g0133651 29.121 182 121 3 111 289 95 271 1.65e-17 82.0
Msa0510510 MtrunA17_Chr3g0133651 25.824 182 121 3 111 284 189 364 6.76e-13 68.6
Msa0510510 MtrunA17_Chr2g0290191 29.744 195 118 6 109 289 4 193 2.73e-17 81.6
Msa0510510 MtrunA17_Chr5g0447761 31.492 181 116 3 107 282 4 181 3.41e-17 81.3
Msa0510510 MtrunA17_Chr3g0139111 29.651 172 109 2 111 282 62 221 3.76e-17 81.3
Msa0510510 MtrunA17_Chr3g0139111 26.020 196 116 2 110 280 146 337 1.71e-13 70.5
Msa0510510 MtrunA17_Chr6g0465751 29.843 191 124 5 106 288 197 385 4.33e-17 81.3
Msa0510510 MtrunA17_Chr6g0465751 28.947 190 113 4 107 290 23 196 1.21e-16 80.1
Msa0510510 MtrunA17_Chr6g0465751 27.624 181 119 5 109 288 113 282 2.59e-11 63.9
Msa0510510 MtrunA17_Chr4g0050781 45.556 90 47 1 201 290 2 89 4.44e-17 78.2
Msa0510510 MtrunA17_Chr4g0050781 37.805 82 51 0 107 188 5 86 3.61e-12 64.3
Msa0510510 MtrunA17_Chr1g0153871 30.526 190 115 4 107 289 95 274 1.03e-16 79.7
Msa0510510 MtrunA17_Chr1g0153871 25.984 254 160 8 42 284 131 367 3.14e-15 75.5
Msa0510510 MtrunA17_Chr1g0210241 44.048 84 45 1 207 290 8 89 1.30e-16 78.2
Msa0510510 MtrunA17_Chr1g0210241 35.366 82 53 0 107 188 5 86 1.54e-11 63.5
Msa0510510 MtrunA17_Chr7g0265341 27.778 180 123 4 109 288 158 330 1.70e-16 79.7
Msa0510510 MtrunA17_Chr7g0265341 29.189 185 122 4 111 288 251 433 6.36e-15 75.1
Msa0510510 MtrunA17_Chr7g0265341 27.128 188 123 4 95 279 54 230 2.76e-13 70.1
Msa0510510 MtrunA17_Chr1g0179701 29.834 181 120 3 108 288 149 322 2.27e-16 79.0
Msa0510510 MtrunA17_Chr1g0179701 28.947 190 124 4 90 279 44 222 3.86e-16 78.6
Msa0510510 MtrunA17_Chr1g0179701 29.730 185 118 5 111 287 243 423 7.85e-14 71.6
Msa0510510 MtrunA17_Chr6g0465691 30.570 193 120 6 106 288 115 303 2.87e-16 79.0
Msa0510510 MtrunA17_Chr6g0465691 27.624 181 119 5 109 288 31 200 3.27e-11 63.5
Msa0510510 MtrunA17_Chr0c09g0493511 29.016 193 123 6 106 288 115 303 7.60e-16 77.4
Msa0510510 MtrunA17_Chr0c09g0493511 29.282 181 116 6 109 288 31 200 2.86e-11 63.9
Msa0510510 MtrunA17_Chr4g0044541 31.250 176 99 4 111 280 36 195 8.95e-16 77.4
Msa0510510 MtrunA17_Chr4g0044541 29.108 213 125 7 87 288 200 397 3.03e-14 72.8
Msa0510510 MtrunA17_Chr4g0044541 26.519 181 126 3 108 288 121 294 2.24e-12 67.4
Msa0510510 MtrunA17_Chr4g0018581 48.000 75 39 0 208 282 453 527 1.93e-15 76.6
Msa0510510 MtrunA17_Chr8g0344491 29.609 179 114 2 104 282 57 223 2.07e-15 75.9
Msa0510510 MtrunA17_Chr3g0135111 29.592 196 121 5 107 290 8 198 4.66e-15 74.7
Msa0510510 MtrunA17_Chr1g0153181 28.235 170 110 3 111 279 34 192 1.37e-14 73.9
Msa0510510 MtrunA17_Chr1g0153181 28.947 190 117 5 111 288 213 396 7.26e-14 71.6
Msa0510510 MtrunA17_Chr7g0219031 39.241 79 43 1 199 272 28 106 1.61e-14 68.6
Msa0510510 MtrunA17_Chr3g0134141 27.179 195 120 4 91 279 6 184 2.33e-14 73.2
Msa0510510 MtrunA17_Chr3g0134141 31.720 186 116 5 111 288 205 387 3.28e-14 72.8
Msa0510510 MtrunA17_Chr4g0045921 26.923 182 116 4 110 287 77 245 2.73e-14 72.4
Msa0510510 MtrunA17_Chr8g0360551 30.636 173 114 4 110 282 74 240 2.93e-14 72.4
Msa0510510 MtrunA17_Chr1g0212611 29.480 173 115 4 110 282 221 386 3.82e-14 72.4
Msa0510510 MtrunA17_Chr1g0186351 27.807 187 121 3 107 282 4 187 4.66e-14 72.0
Msa0510510 MtrunA17_Chr6g0449481 23.350 197 139 3 87 283 26 210 6.04e-14 71.2
Msa0510510 MtrunA17_Chr1g0201151 30.729 192 121 5 106 288 206 394 7.53e-14 71.6
Msa0510510 MtrunA17_Chr1g0201151 26.519 181 111 4 105 279 26 190 9.43e-12 65.5
Msa0510510 MtrunA17_Chr5g0402191 32.000 150 93 3 107 256 2 142 1.09e-13 70.9
Msa0510510 MtrunA17_Chr8g0375101 30.872 149 94 3 107 255 2 141 2.97e-13 69.3
Msa0510510 MtrunA17_Chr4g0026301 26.667 150 91 3 105 252 106 238 3.83e-13 69.3
Msa0510510 MtrunA17_Chr4g0068631 30.159 189 113 4 109 289 88 265 4.48e-13 69.3
Msa0510510 MtrunA17_Chr1g0201001 38.961 77 47 0 208 284 31 107 1.71e-12 67.4
Msa0510510 MtrunA17_Chr4g0013971 24.742 194 121 4 110 279 94 286 5.80e-12 65.9
Msa0510510 MtrunA17_Chr7g0266751 34.146 82 54 0 207 288 33 114 6.73e-12 62.0
Msa0510510 MtrunA17_Chr7g0266751 39.024 82 50 0 110 191 33 114 3.02e-11 60.5
Msa0510510 MtrunA17_Chr4g0031091 32.051 78 53 0 207 284 34 111 8.52e-12 61.2
Msa0510510 MtrunA17_Chr4g0042161 37.931 87 54 0 203 289 48 134 5.88e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510510 AT5G50250.1 58.224 304 96 8 1 288 1 289 1.43e-107 314
Msa0510510 AT4G24770.1 61.679 274 76 6 41 289 59 328 2.64e-106 312
Msa0510510 AT4G24770.2 61.679 274 76 6 41 289 59 328 2.64e-106 312
Msa0510510 AT2G37220.1 53.081 211 77 2 103 291 79 289 5.37e-66 208
Msa0510510 AT1G60000.1 44.560 193 99 4 95 285 70 256 3.31e-47 159
Msa0510510 AT3G52380.1 39.572 187 107 3 107 287 114 300 2.73e-44 153
Msa0510510 AT3G52150.2 41.711 187 101 4 103 282 68 253 3.66e-36 130
Msa0510510 AT3G52150.2 39.785 93 52 1 195 283 61 153 1.58e-17 80.5
Msa0510510 AT3G52150.1 41.711 187 101 4 103 282 68 253 3.66e-36 130
Msa0510510 AT3G52150.1 39.785 93 52 1 195 283 61 153 1.58e-17 80.5
Msa0510510 AT2G35410.1 32.677 254 157 7 30 277 21 266 1.06e-29 114
Msa0510510 AT3G53460.1 61.176 85 33 0 207 291 258 342 1.77e-28 112
Msa0510510 AT3G53460.1 53.509 114 53 0 87 200 77 190 1.37e-26 107
Msa0510510 AT3G53460.1 45.455 88 48 0 201 288 94 181 3.98e-17 80.9
Msa0510510 AT3G53460.1 43.678 87 46 1 110 196 258 341 1.02e-15 76.6
Msa0510510 AT3G53460.3 61.176 85 33 0 207 291 258 342 1.77e-28 112
Msa0510510 AT3G53460.3 53.509 114 53 0 87 200 77 190 1.37e-26 107
Msa0510510 AT3G53460.3 45.455 88 48 0 201 288 94 181 3.98e-17 80.9
Msa0510510 AT3G53460.3 43.678 87 46 1 110 196 258 341 1.02e-15 76.6
Msa0510510 AT3G53460.2 61.176 85 33 0 207 291 258 342 1.77e-28 112
Msa0510510 AT3G53460.2 53.509 114 53 0 87 200 77 190 1.37e-26 107
Msa0510510 AT3G53460.2 45.455 88 48 0 201 288 94 181 3.98e-17 80.9
Msa0510510 AT3G53460.2 43.678 87 46 1 110 196 258 341 1.02e-15 76.6
Msa0510510 AT3G53460.4 61.176 85 33 0 207 291 279 363 2.75e-28 112
Msa0510510 AT3G53460.4 45.185 135 53 1 87 200 77 211 4.83e-22 94.7
Msa0510510 AT3G53460.4 43.678 87 46 1 110 196 279 362 1.14e-15 76.6
Msa0510510 AT3G53460.4 36.697 109 48 1 201 288 94 202 1.98e-13 70.1
Msa0510510 AT1G01080.1 35.450 189 114 4 98 279 97 284 7.01e-28 109
Msa0510510 AT1G01080.2 35.263 190 114 5 98 279 97 285 5.19e-27 107
Msa0510510 AT1G01080.3 34.637 179 109 4 98 269 97 274 2.20e-25 102
Msa0510510 AT3G16380.1 32.384 281 146 11 42 288 118 388 2.42e-23 100
Msa0510510 AT3G16380.1 26.289 194 129 3 87 280 5 184 4.86e-12 66.6
Msa0510510 AT3G23830.2 51.899 79 38 0 207 285 36 114 2.02e-22 90.9
Msa0510510 AT3G23830.2 41.667 84 49 0 109 192 35 118 4.80e-14 68.2
Msa0510510 AT3G23830.1 51.899 79 38 0 207 285 36 114 2.02e-22 90.9
Msa0510510 AT3G23830.1 41.667 84 49 0 109 192 35 118 4.80e-14 68.2
Msa0510510 AT2G21660.2 50.649 77 38 0 207 283 9 85 2.12e-22 91.7
Msa0510510 AT2G21660.2 43.590 78 44 0 108 185 7 84 2.20e-13 67.0
Msa0510510 AT4G13850.4 50.000 80 40 0 207 286 36 115 3.18e-22 90.1
Msa0510510 AT4G13850.4 39.759 83 47 1 110 192 36 115 8.97e-11 58.9
Msa0510510 AT2G21660.1 50.649 77 38 0 207 283 9 85 3.23e-22 91.7
Msa0510510 AT2G21660.1 43.590 78 44 0 108 185 7 84 3.08e-13 67.0
Msa0510510 AT4G13850.3 50.000 80 40 0 207 286 36 115 4.39e-22 90.1
Msa0510510 AT4G13850.3 39.286 84 51 0 110 193 36 119 2.28e-11 61.2
Msa0510510 AT4G13850.2 50.000 80 40 0 207 286 36 115 5.54e-22 90.1
Msa0510510 AT4G13850.2 39.286 84 51 0 110 193 36 119 2.74e-11 61.2
Msa0510510 AT4G13850.1 50.000 80 40 0 207 286 36 115 6.29e-22 90.1
Msa0510510 AT4G13850.1 39.286 84 51 0 110 193 36 119 3.02e-11 61.2
Msa0510510 AT4G39260.3 45.238 84 46 0 207 290 7 90 5.41e-21 85.9
Msa0510510 AT4G39260.3 39.759 83 50 0 108 190 5 87 8.95e-14 66.2
Msa0510510 AT2G18510.1 31.472 197 119 3 94 289 15 196 4.08e-20 89.4
Msa0510510 AT4G39260.2 46.753 77 41 0 207 283 7 83 5.53e-20 84.0
Msa0510510 AT4G39260.2 39.241 79 48 0 108 186 5 83 9.58e-12 61.6
Msa0510510 AT4G39260.1 46.753 77 41 0 207 283 7 83 1.62e-19 84.0
Msa0510510 AT4G39260.1 39.241 79 48 0 108 186 5 83 2.32e-11 61.6
Msa0510510 AT1G22760.1 31.088 193 118 4 106 288 226 413 2.21e-19 88.6
Msa0510510 AT5G19350.2 30.556 180 119 2 111 289 26 200 2.46e-19 87.8
Msa0510510 AT5G19350.1 30.556 180 119 2 111 289 26 200 2.46e-19 87.8
Msa0510510 AT5G61030.2 45.570 79 43 0 207 285 41 119 4.14e-19 85.9
Msa0510510 AT5G61030.2 42.500 80 46 0 109 188 40 119 6.84e-13 68.2
Msa0510510 AT5G61030.1 45.570 79 43 0 207 285 41 119 4.14e-19 85.9
Msa0510510 AT5G61030.1 42.500 80 46 0 109 188 40 119 6.84e-13 68.2
Msa0510510 AT5G54900.1 32.402 179 111 4 111 285 62 234 9.42e-19 85.9
Msa0510510 AT5G54900.1 25.806 217 125 7 77 280 135 328 1.47e-11 64.7
Msa0510510 AT4G09040.1 29.885 174 119 3 108 280 93 264 1.22e-18 84.7
Msa0510510 AT4G09040.2 29.885 174 119 3 108 280 33 204 1.34e-18 83.2
Msa0510510 AT1G34140.1 33.152 184 111 4 111 285 121 301 1.45e-18 85.5
Msa0510510 AT1G11650.1 29.384 211 127 4 79 285 43 235 1.65e-18 84.3
Msa0510510 AT1G17640.2 29.444 180 119 3 109 288 66 237 2.86e-18 84.3
Msa0510510 AT1G17640.1 29.444 180 119 3 109 288 66 237 2.86e-18 84.3
Msa0510510 AT1G17640.3 29.444 180 119 3 109 288 66 237 2.86e-18 84.3
Msa0510510 AT3G19130.1 33.155 187 103 6 111 288 110 283 3.08e-18 84.7
Msa0510510 AT3G08000.1 43.373 83 47 0 207 289 42 124 5.26e-18 79.3
Msa0510510 AT3G14100.1 31.844 179 110 3 104 282 54 220 5.47e-18 84.0
Msa0510510 AT1G11650.2 29.384 211 127 4 79 285 43 235 6.06e-18 83.6
Msa0510510 AT1G11650.2 28.415 183 108 5 111 280 157 329 9.97e-12 65.5
Msa0510510 AT2G36660.1 28.788 198 131 4 99 288 190 385 7.24e-18 84.0
Msa0510510 AT2G36660.1 27.222 180 118 4 111 288 114 282 7.60e-12 65.9
Msa0510510 AT1G71770.1 30.846 201 128 5 96 288 226 423 8.62e-18 84.0
Msa0510510 AT1G71770.1 28.729 181 124 3 108 288 145 320 1.80e-14 73.9
Msa0510510 AT1G71770.2 30.846 201 128 5 96 288 226 423 8.62e-18 84.0
Msa0510510 AT1G71770.2 28.729 181 124 3 108 288 145 320 1.80e-14 73.9
Msa0510510 AT1G49600.3 32.044 181 113 4 111 288 121 294 1.29e-17 82.8
Msa0510510 AT1G49600.2 32.044 181 113 4 111 288 121 294 1.29e-17 82.8
Msa0510510 AT5G40490.1 27.429 175 118 2 109 283 42 207 2.08e-17 82.0
Msa0510510 AT3G26420.1 43.210 81 46 0 203 283 4 84 2.70e-17 79.7
Msa0510510 AT1G49600.1 32.044 181 113 4 111 288 121 294 3.29e-17 81.6
Msa0510510 AT2G23350.1 30.814 172 109 2 109 280 46 207 4.96e-17 81.6
Msa0510510 AT2G23350.1 29.630 189 116 5 111 288 227 409 6.85e-15 75.1
Msa0510510 AT2G23350.1 29.444 180 120 4 109 288 134 306 5.15e-14 72.4
Msa0510510 AT5G55550.2 29.508 183 117 4 109 282 6 185 5.16e-17 81.3
Msa0510510 AT5G55550.3 29.508 183 117 4 109 282 6 185 5.16e-17 81.3
Msa0510510 AT5G55550.6 29.508 183 117 4 109 282 6 185 5.16e-17 81.3
Msa0510510 AT5G55550.11 29.508 183 117 4 109 282 6 185 5.16e-17 81.3
Msa0510510 AT4G34110.1 30.857 175 99 4 111 279 38 196 6.12e-17 81.3
Msa0510510 AT4G34110.1 27.957 186 123 4 111 288 217 399 2.12e-15 76.6
Msa0510510 AT5G55550.5 29.508 183 117 4 109 282 6 185 6.94e-17 80.9
Msa0510510 AT5G55550.4 29.508 183 117 4 109 282 6 185 6.94e-17 80.9
Msa0510510 AT5G55550.9 29.508 183 117 4 109 282 6 185 6.94e-17 80.9
Msa0510510 AT5G55550.7 29.508 183 117 4 109 282 6 185 6.94e-17 80.9
Msa0510510 AT5G55550.1 29.508 183 117 4 109 282 6 185 6.94e-17 80.9
Msa0510510 AT4G36960.1 31.351 185 112 4 108 288 2 175 7.57e-17 80.1
Msa0510510 AT4G36960.2 31.351 185 112 4 108 288 2 175 7.57e-17 80.1
Msa0510510 AT4G26650.2 29.032 186 117 4 109 282 12 194 8.09e-17 80.5
Msa0510510 AT3G13224.1 26.752 157 108 2 109 265 19 168 8.22e-17 78.2
Msa0510510 AT4G26650.1 29.032 186 117 4 109 282 15 197 8.31e-17 80.5
Msa0510510 AT1G17370.1 30.168 179 113 2 104 282 49 215 1.15e-16 80.1
Msa0510510 AT1G17370.1 27.551 196 113 3 110 280 140 331 9.30e-12 65.5
Msa0510510 AT1G47500.2 30.412 194 113 4 107 289 101 283 1.19e-16 79.0
Msa0510510 AT1G17370.2 30.168 179 113 2 104 282 49 215 1.31e-16 79.7
Msa0510510 AT1G17370.2 27.979 193 113 3 110 280 140 328 4.25e-12 66.6
Msa0510510 AT3G07810.1 32.278 158 98 2 107 257 4 159 1.53e-16 79.7
Msa0510510 AT3G07810.2 32.278 158 98 2 107 257 4 159 1.58e-16 79.7
Msa0510510 AT1G74230.1 48.684 76 38 1 207 282 35 109 1.81e-16 78.2
Msa0510510 AT1G47500.1 30.412 194 113 4 107 289 101 283 3.62e-16 78.6
Msa0510510 AT1G47500.1 28.272 191 117 5 111 287 201 385 7.89e-12 65.9
Msa0510510 AT3G13224.3 25.140 179 125 3 110 288 11 180 4.61e-16 77.8
Msa0510510 AT1G54080.1 29.609 179 114 3 104 282 58 224 6.04e-16 77.8
Msa0510510 AT1G54080.1 28.061 196 112 4 110 280 149 340 1.16e-11 65.1
Msa0510510 AT1G47490.2 30.102 196 111 5 107 289 99 281 7.20e-16 76.6
Msa0510510 AT4G27000.1 29.775 178 116 4 111 285 82 253 7.78e-16 77.4
Msa0510510 AT3G13224.2 25.000 180 126 3 109 288 19 189 1.14e-15 76.6
Msa0510510 AT1G47490.1 30.102 196 111 5 107 289 99 281 3.15e-15 75.9
Msa0510510 AT1G47490.1 28.272 191 117 4 111 287 199 383 6.08e-13 68.9
Msa0510510 AT4G14300.1 28.649 185 120 3 107 282 4 185 3.39e-15 75.5
Msa0510510 AT4G14300.2 28.649 185 120 3 107 282 4 185 3.39e-15 75.5
Msa0510510 AT4G39260.4 46.774 62 33 0 207 268 7 68 3.85e-15 70.5
Msa0510510 AT3G15010.1 32.353 170 106 5 108 273 74 238 3.92e-15 75.5
Msa0510510 AT3G15010.2 32.353 170 106 5 108 273 74 238 3.92e-15 75.5
Msa0510510 AT4G13860.1 50.667 75 35 1 207 281 4 76 4.32e-15 69.7
Msa0510510 AT5G40490.2 27.097 155 104 2 129 283 45 190 8.53e-15 74.3
Msa0510510 AT5G47620.1 28.804 184 117 4 107 282 4 181 1.05e-14 74.3
Msa0510510 AT5G47620.2 28.804 184 117 4 107 282 4 181 1.05e-14 74.3
Msa0510510 AT5G47620.5 28.804 184 117 4 107 282 4 181 1.05e-14 74.3
Msa0510510 AT5G41690.1 29.703 202 115 5 108 286 67 264 1.10e-14 74.3
Msa0510510 AT5G41690.3 29.703 202 115 5 108 286 67 264 1.10e-14 74.3
Msa0510510 AT5G41690.2 29.703 202 115 5 108 286 67 264 1.10e-14 74.3
Msa0510510 AT1G54080.2 29.508 183 113 4 104 282 58 228 1.28e-14 73.9
Msa0510510 AT5G06210.1 39.024 82 50 0 109 190 34 115 1.37e-14 70.1
Msa0510510 AT5G06210.1 38.554 83 51 0 207 289 35 117 1.72e-13 67.0
Msa0510510 AT1G49760.1 30.000 170 107 3 111 279 47 205 2.61e-14 73.6
Msa0510510 AT1G49760.1 30.366 191 115 5 111 288 226 411 1.29e-13 71.2
Msa0510510 AT1G49760.2 30.000 170 107 3 111 279 47 205 2.61e-14 73.6
Msa0510510 AT1G49760.2 30.366 191 115 5 111 288 226 411 1.29e-13 71.2
Msa0510510 AT1G60650.2 41.558 77 45 0 207 283 13 89 3.31e-14 72.0
Msa0510510 AT1G60650.2 33.333 81 54 0 108 188 11 91 2.48e-11 63.5
Msa0510510 AT1G60650.1 41.558 77 45 0 207 283 13 89 3.31e-14 72.0
Msa0510510 AT1G60650.1 33.333 81 54 0 108 188 11 91 2.48e-11 63.5
Msa0510510 AT5G47320.1 43.750 80 45 0 207 286 32 111 3.34e-14 70.5
Msa0510510 AT2G33410.1 29.947 187 115 5 107 282 4 185 3.07e-13 69.7
Msa0510510 AT5G04280.1 41.558 77 45 0 207 283 8 84 1.50e-12 67.4
Msa0510510 AT1G18630.1 44.156 77 43 0 207 283 37 113 1.73e-12 64.3
Msa0510510 AT2G21690.1 37.349 83 49 1 209 288 10 92 2.75e-12 62.8
Msa0510510 AT5G51300.1 41.333 75 44 0 208 282 482 556 3.27e-12 67.4
Msa0510510 AT5G51300.1 32.847 137 79 4 57 182 419 553 5.17e-12 66.6
Msa0510510 AT5G51300.2 41.333 75 44 0 208 282 482 556 3.27e-12 67.4
Msa0510510 AT5G51300.2 32.847 137 79 4 57 182 419 553 5.17e-12 66.6
Msa0510510 AT5G51300.3 41.333 75 44 0 208 282 482 556 3.27e-12 67.4
Msa0510510 AT5G51300.3 32.847 137 79 4 57 182 419 553 5.17e-12 66.6
Msa0510510 AT3G55340.1 27.778 198 129 8 96 286 151 341 6.15e-12 66.2
Msa0510510 AT3G18610.2 31.319 182 112 6 111 287 326 499 6.16e-12 66.2
Msa0510510 AT5G09880.1 27.461 193 131 5 96 284 157 344 6.88e-12 66.2
Msa0510510 AT3G18610.3 31.319 182 112 6 111 287 356 529 7.18e-12 66.2
Msa0510510 AT3G18610.1 31.319 182 112 6 111 287 386 559 7.60e-12 65.9
Msa0510510 AT3G46020.1 37.179 78 49 0 207 284 8 85 1.11e-11 60.8
Msa0510510 AT5G59865.1 35.366 82 51 1 207 288 27 106 1.17e-11 61.2
Msa0510510 AT1G71800.1 38.961 77 47 0 208 284 11 87 1.89e-11 64.7
Msa0510510 AT5G11412.1 52.000 50 24 0 207 256 53 102 2.41e-11 61.6
Msa0510510 AT5G19960.1 39.726 73 43 1 208 280 9 80 3.31e-11 63.5
Msa0510510 AT4G13860.2 48.333 60 31 0 222 281 2 61 3.39e-11 58.5
Msa0510510 AT4G00830.4 28.415 183 120 6 110 288 197 372 3.87e-11 63.9
Msa0510510 AT4G00830.2 28.415 183 120 6 110 288 197 372 5.00e-11 63.5
Msa0510510 AT4G00830.1 28.415 183 120 6 110 288 197 372 5.00e-11 63.5
Msa0510510 AT4G00830.6 28.415 183 120 6 110 288 197 372 5.00e-11 63.5
Msa0510510 AT3G56860.9 25.962 208 117 6 104 289 135 327 5.03e-11 63.5
Msa0510510 AT3G56860.11 25.962 208 117 6 104 289 135 327 5.03e-11 63.5
Msa0510510 AT3G56860.8 25.962 208 117 6 104 289 135 327 5.03e-11 63.5
Msa0510510 AT3G56860.5 25.962 208 117 6 104 289 135 327 5.03e-11 63.5
Msa0510510 AT3G56860.7 25.962 208 117 6 104 289 135 327 5.03e-11 63.5
Msa0510510 AT3G56860.2 25.962 208 117 6 104 289 135 327 5.03e-11 63.5
Msa0510510 AT3G56860.6 25.962 208 117 6 104 289 135 327 5.03e-11 63.5
Msa0510510 AT3G56860.10 25.962 208 117 6 104 289 135 327 5.03e-11 63.5
Msa0510510 AT3G56860.3 25.962 208 117 6 104 289 135 327 5.03e-11 63.5
Msa0510510 AT3G56860.1 25.962 208 117 6 104 289 135 327 5.03e-11 63.5
Msa0510510 AT3G56860.4 25.962 208 117 6 104 289 135 327 5.03e-11 63.5
Msa0510510 AT4G36690.3 25.888 197 121 4 110 282 240 435 7.66e-11 62.8

Find 107 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTCTACAGTACTTAATT+TGG 0.215345 3_4:-59578206 Msa0510510:three_prime_UTR
ACGGACCGGAGTCGTGGTTT+TGG 0.257885 3_4:-59580033 Msa0510510:CDS
TTACATAGGCGTTAAACTTC+TGG 0.269681 3_4:+59579968 None:intergenic
ACAAATAAATAACAGTAAAA+TGG 0.277176 3_4:+59578374 None:intergenic
AAGGGAGAAGAAGGTGGGTT+TGG 0.294440 3_4:+59580476 None:intergenic
TACTCAAAAGGAGCCGCGTC+TGG 0.295336 3_4:+59578511 None:intergenic
GAAGAAGGTGGGTTTGGGTT+TGG 0.297511 3_4:+59580482 None:intergenic
AGGGAGAAGAAGGTGGGTTT+GGG 0.311032 3_4:+59580477 None:intergenic
GAACATGAAAGAAAATTTAA+TGG 0.316046 3_4:+59578223 None:intergenic
TGATGTTGATAGTGAGAAAT+TGG 0.320740 3_4:-59580208 Msa0510510:CDS
CTCAGCAATCTCAACGGTTC+CGG 0.324374 3_4:+59580167 None:intergenic
ACTGGTCGATCACGTGGATT+TGG 0.332826 3_4:-59578832 Msa0510510:CDS
GAGATGGAGATTGAGGGGTT+TGG 0.346796 3_4:+59580449 None:intergenic
GATTGAGGGGTTTGGAGGGA+AGG 0.360326 3_4:+59580457 None:intergenic
GGCAGGAATCGGCCATGGTT+AGG 0.362198 3_4:+59580526 None:intergenic
GTTTGGGTTTGGAGTGGAAG+AGG 0.389299 3_4:+59580493 None:intergenic
AGTTTCAGCGGCGTCGGCAG+TGG 0.389734 3_4:+59580320 None:intergenic
ATGGAGATTGAGGGGTTTGG+AGG 0.396602 3_4:+59580452 None:intergenic
GAGGAAGCAAAATTATTTGT+TGG 0.402885 3_4:-59580243 Msa0510510:CDS
GATGCCATTGCCGCTCTTGA+TGG 0.408798 3_4:-59578775 Msa0510510:CDS
TTTGGGTTTGGAGTGGAAGA+GGG 0.412475 3_4:+59580494 None:intergenic
TGATGGAGAGATGGAGATTG+AGG 0.421108 3_4:+59580442 None:intergenic
GCAGGAATCGGCCATGGTTA+GGG 0.422585 3_4:+59580527 None:intergenic
GGAGTAGCCGGTTTCATGCT+AGG 0.428274 3_4:-59578402 Msa0510510:three_prime_UTR
TTTGGAGGGAAGGGAGAAGA+AGG 0.441974 3_4:+59580467 None:intergenic
GAGGGAAGGGAGAAGAAGGT+GGG 0.447073 3_4:+59580471 None:intergenic
ATTGAGGGGTTTGGAGGGAA+GGG 0.448793 3_4:+59580458 None:intergenic
GGAGGGAAGGGAGAAGAAGG+TGG 0.449920 3_4:+59580470 None:intergenic
CGCTCGGGTCGAGATCCTTT+AGG 0.452976 3_4:+59579000 None:intergenic
GAAGAGGGATGAGAGGAGGC+AGG 0.455657 3_4:+59580509 None:intergenic
GCCGCGTCTGGGCCTGTCTT+CGG 0.457397 3_4:+59578523 None:intergenic
TGGAGATTGAGGGGTTTGGA+GGG 0.458466 3_4:+59580453 None:intergenic
CATTGCCGCTCTTGATGGTC+AGG 0.460084 3_4:-59578770 Msa0510510:intron
GGATTTGAAGAGGGGAGTGG+TGG 0.461394 3_4:+59580548 None:intergenic
ATCATTCATTTCAGTTTCAT+CGG 0.463677 3_4:+59578795 None:intergenic
TTCTCACTATCAACATCAAA+AGG 0.466331 3_4:+59580213 None:intergenic
GTTTCAGCGGCGTCGGCAGT+GGG 0.467592 3_4:+59580321 None:intergenic
GGATAAACCTAGCATGAAAC+CGG 0.474197 3_4:+59578395 None:intergenic
TGGAGTGGAAGAGGGATGAG+AGG 0.474920 3_4:+59580502 None:intergenic
GAGTGAGCGTTGCCGAAGAC+AGG 0.476254 3_4:-59578535 Msa0510510:CDS
GGATGAGAGGAGGCAGGAAT+CGG 0.476652 3_4:+59580515 None:intergenic
AGCTGGATTGAGTCTCGATT+GGG 0.477060 3_4:-59580346 Msa0510510:CDS
GATGGAGAGATGGAGATTGA+GGG 0.487203 3_4:+59580443 None:intergenic
AGGTGCACGCTCAGTACGCT+CGG 0.489901 3_4:+59578984 None:intergenic
GTTAACAAGGCTTCTCCTAA+AGG 0.492516 3_4:-59579015 Msa0510510:CDS
TTTATGTTGGTAACTTGCCA+TGG 0.495693 3_4:-59578936 Msa0510510:CDS
TAGGGATTTGAAGAGGGGAG+TGG 0.499159 3_4:+59580545 None:intergenic
AAGCTGGATTGAGTCTCGAT+TGG 0.501735 3_4:-59580347 Msa0510510:CDS
CATTGCAGAGTTTGGAGGGT+AGG 0.503587 3_4:-59578565 Msa0510510:intron
ATAACTCTAGCAGTTGATAC+AGG 0.503860 3_4:+59578472 None:intergenic
CCCTTGTTCGTTGCTCAAGA+AGG 0.508002 3_4:-59580399 Msa0510510:CDS
CATGGGAAGTTGATAATAGT+AGG 0.509813 3_4:-59578918 Msa0510510:CDS
CCAACATAAATTCTTATGAC+AGG 0.511751 3_4:+59578949 None:intergenic
AGGTGGGTTTGGGTTTGGAG+TGG 0.516265 3_4:+59580487 None:intergenic
CTTTCATTGCAGAGTTTGGA+GGG 0.518996 3_4:-59578569 Msa0510510:intron
CATGGTTAGGGATTTGAAGA+GGG 0.528817 3_4:+59580539 None:intergenic
ACTCAAAAGGAGCCGCGTCT+GGG 0.529406 3_4:+59578512 None:intergenic
AGTTTCAGTTTCAGCGGCGT+CGG 0.530215 3_4:+59580314 None:intergenic
CTGACCATCAAGAGCGGCAA+TGG 0.534062 3_4:+59578771 None:intergenic
GCTTTCATTGCAGAGTTTGG+AGG 0.537218 3_4:-59578570 Msa0510510:intron
GTGGTGATGATGATGATAGA+AGG 0.537259 3_4:+59580588 None:intergenic
GGTTATTTATAACAGAGAAA+CGG 0.537755 3_4:-59580052 Msa0510510:CDS
CAAGGGAGAGAAAGAGCGGT+TGG 0.540997 3_4:+59580416 None:intergenic
AAGATCGTTGGCTGTTAACA+AGG 0.543599 3_4:-59579028 Msa0510510:CDS
ACCTCTCTAGACGAAGAAGC+TGG 0.546071 3_4:-59580363 Msa0510510:CDS
GTAGTCTATGATAGAGAGAC+TGG 0.551457 3_4:-59578850 Msa0510510:CDS
AAACTTCTGGACAGCAGACT+CGG 0.551715 3_4:+59579981 None:intergenic
ATGGAGAGATGGAGATTGAG+GGG 0.552843 3_4:+59580444 None:intergenic
GCAGAGGTGGAGAGTAGGCA+TGG 0.553538 3_4:-59578282 Msa0510510:three_prime_UTR
AGCAGACTCGGCTTCTTCAA+CGG 0.555548 3_4:+59579993 None:intergenic
AGACTGCAGAGGTGGAGAGT+AGG 0.558940 3_4:-59578287 Msa0510510:three_prime_UTR
GGACTACGATGGAAGATCGT+TGG 0.560144 3_4:-59579040 Msa0510510:CDS
GCCTTCTTGAGCAACGAACA+AGG 0.561779 3_4:+59580398 None:intergenic
CAGAGGTGGAGAGTAGGCAT+GGG 0.562530 3_4:-59578281 Msa0510510:three_prime_UTR
TACTTGACGAGCTACTCAAA+AGG 0.564061 3_4:+59578499 None:intergenic
TTATGTTGGTAACTTGCCAT+GGG 0.577556 3_4:-59578935 Msa0510510:CDS
AGAGAAACGGACCGGAGTCG+TGG 0.578383 3_4:-59580039 Msa0510510:CDS
AGTGGAAGAGGGATGAGAGG+AGG 0.581707 3_4:+59580505 None:intergenic
CCATGGTTAGGGATTTGAAG+AGG 0.582325 3_4:+59580538 None:intergenic
TGGTGATGATGATGATAGAA+GGG 0.584512 3_4:+59580589 None:intergenic
GGTTTCAGTTTCAGTTTCAG+CGG 0.588238 3_4:+59580308 None:intergenic
TGCTAGAAGTCTATAAAACT+CGG 0.590668 3_4:-59578247 Msa0510510:three_prime_UTR
AGAGAGACTGGTCGATCACG+TGG 0.593334 3_4:-59578838 Msa0510510:CDS
GAAACTGAAACTGAAACCAC+TGG 0.593405 3_4:-59580303 Msa0510510:CDS
CTACTATTATCAACTTCCCA+TGG 0.597561 3_4:+59578919 None:intergenic
TCCAGCTTCTTCGTCTAGAG+AGG 0.597884 3_4:+59580362 None:intergenic
GAGGAGGCAGGAATCGGCCA+TGG 0.598795 3_4:+59580521 None:intergenic
TTTATAACAGAGAAACGGAC+CGG 0.600332 3_4:-59580047 Msa0510510:CDS
CCTGTCATAAGAATTTATGT+TGG 0.603593 3_4:-59578949 Msa0510510:CDS
GGTGCACGCTCAGTACGCTC+GGG 0.609107 3_4:+59578985 None:intergenic
GCCGAAGACAGGCCCAGACG+CGG 0.612716 3_4:-59578524 Msa0510510:CDS
AGCTTCTTCGTCTAGAGAGG+TGG 0.617257 3_4:+59580365 None:intergenic
CAAATCCAAAACCACGACTC+CGG 0.626160 3_4:+59580028 None:intergenic
TTCAGCAGAATCATCACCAG+TGG 0.627029 3_4:+59580287 None:intergenic
ATGGTTAGGGATTTGAAGAG+GGG 0.642863 3_4:+59580540 None:intergenic
CCTTCTTGAGCAACGAACAA+GGG 0.648260 3_4:+59580399 None:intergenic
GGAAGTGATAGACATGGTGG+TGG 0.651969 3_4:+59580569 None:intergenic
TTCATTTGACAGGACTACGA+TGG 0.654742 3_4:-59579051 Msa0510510:intron
TGTTACCTCAGCAATCTCAA+CGG 0.671010 3_4:+59580161 None:intergenic
CCTCTTCAAATCCCTAACCA+TGG 0.678784 3_4:-59580538 Msa0510510:CDS
GGTGGAAGTGATAGACATGG+TGG 0.687740 3_4:+59580566 None:intergenic
CGAACAAGGGAGAGAAAGAG+CGG 0.688910 3_4:+59580412 None:intergenic
CGGAACCGTTGAGATTGCTG+AGG 0.697900 3_4:-59580166 Msa0510510:intron
AGTGGTGGAAGTGATAGACA+TGG 0.705544 3_4:+59580563 None:intergenic
AGAGGTGGAGAGTAGGCATG+GGG 0.710990 3_4:-59578280 Msa0510510:three_prime_UTR
TTATACCTGACCATCAAGAG+CGG 0.726743 3_4:+59578765 None:intergenic
ATGACAGGTTCAAAACTGCG+AGG 0.748725 3_4:+59578964 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTTGAGAAAATTGAA+TGG - chr3_4:59579161-59579180 Msa0510510:intron 15.0%
!! AATATTACAATTTAGTCATA+CGG + chr3_4:59579513-59579532 None:intergenic 15.0%
!!! TGTTAGATTTCTTATTTATA+TGG - chr3_4:59579574-59579593 Msa0510510:intron 15.0%
!!! ATTCTTATATAATTTTCTTC+TGG - chr3_4:59580398-59580417 Msa0510510:CDS 15.0%
!! ACAAATAAATAACAGTAAAA+TGG + chr3_4:59580450-59580469 None:intergenic 15.0%
!!! TGCTATTTGAGTTTATTTTT+TGG - chr3_4:59578705-59578724 Msa0510510:intron 20.0%
!!! ATTGTTGTTATTCTTGTTTT+AGG - chr3_4:59578748-59578767 Msa0510510:intron 20.0%
!! AATTTCATTTGAACTTACAT+AGG + chr3_4:59578870-59578889 None:intergenic 20.0%
!! TAACACATTCTAAATTATAG+TGG - chr3_4:59578907-59578926 Msa0510510:CDS 20.0%
!! ACATATCAATGTAAACTATA+AGG - chr3_4:59578972-59578991 Msa0510510:CDS 20.0%
!!! AAAAAAATGGCATTGTTTTA+AGG + chr3_4:59579552-59579571 None:intergenic 20.0%
!! GAAATCTAACAAGAAAAAAA+TGG + chr3_4:59579565-59579584 None:intergenic 20.0%
!!! TTTTTTTTGTTGTGTTTTCT+TGG - chr3_4:59579735-59579754 Msa0510510:intron 20.0%
!!! TATTTGTGTTTTAATAGTTG+AGG - chr3_4:59580369-59580388 Msa0510510:CDS 20.0%
!! GAACATGAAAGAAAATTTAA+TGG + chr3_4:59580601-59580620 None:intergenic 20.0%
!!! TTAGATTTTAGAAGGAATGA+AGG + chr3_4:59578211-59578230 None:intergenic 25.0%
! GGTTATTTATAACAGAGAAA+CGG - chr3_4:59578769-59578788 Msa0510510:intron 25.0%
! AATGTCGATATTTCAATCTA+TGG - chr3_4:59578931-59578950 Msa0510510:CDS 25.0%
! TATTAGTAGTTTCAATGTGT+CGG + chr3_4:59579145-59579164 None:intergenic 25.0%
! CTTTACTCTTGAATGAAATA+TGG - chr3_4:59579243-59579262 Msa0510510:intron 25.0%
!!! ATTCATTTTTCTTGCTTTCT+TGG - chr3_4:59579309-59579328 Msa0510510:intron 25.0%
!! CCTCATATAATTTTCCAAAT+CGG + chr3_4:59579416-59579435 None:intergenic 25.0%
! ATTTGGAAAATTATATGAGG+TGG - chr3_4:59579416-59579435 Msa0510510:intron 25.0%
! AAAATTATATGAGGTGGTTT+AGG - chr3_4:59579422-59579441 Msa0510510:intron 25.0%
! ATCATTCATTTCAGTTTCAT+CGG + chr3_4:59580029-59580048 None:intergenic 25.0%
!! TGAAGGGAATATGATTTTTA+TGG - chr3_4:59580141-59580160 Msa0510510:intron 25.0%
!! GAAGGGAATATGATTTTTAT+GGG - chr3_4:59580142-59580161 Msa0510510:intron 25.0%
! ATGTTCTACAGTACTTAATT+TGG - chr3_4:59580615-59580634 Msa0510510:five_prime_UTR 25.0%
! AGAAGGGTTTAGATTTTAGA+AGG + chr3_4:59578219-59578238 None:intergenic 30.0%
! ACAAATAATTTTGCTTCCTC+AGG + chr3_4:59578578-59578597 None:intergenic 30.0%
GAGGAAGCAAAATTATTTGT+TGG - chr3_4:59578578-59578597 Msa0510510:intron 30.0%
TTCTCACTATCAACATCAAA+AGG + chr3_4:59578611-59578630 None:intergenic 30.0%
!! TGATGTTGATAGTGAGAAAT+TGG - chr3_4:59578613-59578632 Msa0510510:intron 30.0%
! GTGACAACCATTTTGAATTT+TGG - chr3_4:59579193-59579212 Msa0510510:intron 30.0%
AAAGAACTCAAGATAGGATT+AGG + chr3_4:59579227-59579246 None:intergenic 30.0%
AAGAGTAAAGAACTCAAGAT+AGG + chr3_4:59579233-59579252 None:intergenic 30.0%
TTTCCATCTTGAACAAATAG+AGG - chr3_4:59579269-59579288 Msa0510510:intron 30.0%
TTTCCTCTATTTGTTCAAGA+TGG + chr3_4:59579275-59579294 None:intergenic 30.0%
!! AGACACATAAGAAGTATTAC+AGG + chr3_4:59579336-59579355 None:intergenic 30.0%
! TATATAGTATGCGTTCTAAG+GGG + chr3_4:59579383-59579402 None:intergenic 30.0%
CTATATAGTATGCGTTCTAA+GGG + chr3_4:59579384-59579403 None:intergenic 30.0%
ACTATATAGTATGCGTTCTA+AGG + chr3_4:59579385-59579404 None:intergenic 30.0%
!! CCGATTTGGAAAATTATATG+AGG - chr3_4:59579413-59579432 Msa0510510:intron 30.0%
TACAATTTAGTCATACGGAT+TGG + chr3_4:59579508-59579527 None:intergenic 30.0%
! ACATGTTTTACTGTTGTCAT+TGG - chr3_4:59579696-59579715 Msa0510510:intron 30.0%
CCAACATAAATTCTTATGAC+AGG + chr3_4:59579875-59579894 None:intergenic 30.0%
CCTGTCATAAGAATTTATGT+TGG - chr3_4:59579872-59579891 Msa0510510:intron 30.0%
!!! AGTTTTTAGTGAACATGGTA+AGG - chr3_4:59579934-59579953 Msa0510510:intron 30.0%
GTACTTTGCTAAATTATCAG+TGG - chr3_4:59580085-59580104 Msa0510510:intron 30.0%
!! GCATTGATAATGACATGTTA+TGG - chr3_4:59580114-59580133 Msa0510510:intron 30.0%
TGACATGTTATGGAAATTGA+AGG - chr3_4:59580124-59580143 Msa0510510:intron 30.0%
GACATGTTATGGAAATTGAA+GGG - chr3_4:59580125-59580144 Msa0510510:intron 30.0%
! TTTTATAGACTTCTAGCAAG+AGG + chr3_4:59580572-59580591 None:intergenic 30.0%
TGCTAGAAGTCTATAAAACT+CGG - chr3_4:59580574-59580593 Msa0510510:exon 30.0%
AGGAATGAAGGAGAAAAATG+AGG + chr3_4:59578199-59578218 None:intergenic 35.0%
! TGGTGATGATGATGATAGAA+GGG + chr3_4:59578235-59578254 None:intergenic 35.0%
! AATAATTTTGCTTCCTCAGG+TGG + chr3_4:59578575-59578594 None:intergenic 35.0%
TTTATAACAGAGAAACGGAC+CGG - chr3_4:59578774-59578793 Msa0510510:CDS 35.0%
TTACATAGGCGTTAAACTTC+TGG + chr3_4:59578856-59578875 None:intergenic 35.0%
GTCGATATTTCAATCTATGG+TGG - chr3_4:59578934-59578953 Msa0510510:CDS 35.0%
AGATAAGATGCAATGAAAGC+TGG - chr3_4:59579015-59579034 Msa0510510:CDS 35.0%
!! ACCATTTTGAATTTTGGTGC+TGG - chr3_4:59579199-59579218 Msa0510510:intron 35.0%
ACCAGCACCAAAATTCAAAA+TGG + chr3_4:59579203-59579222 None:intergenic 35.0%
TATAGTTGCAATCTCCGATT+TGG - chr3_4:59579399-59579418 Msa0510510:intron 35.0%
ACATACTTTGTATGAAGCAC+TGG + chr3_4:59579462-59579481 None:intergenic 35.0%
! TTGTTGTGTTTTCTTGGTTC+TGG - chr3_4:59579741-59579760 Msa0510510:intron 35.0%
GTAGTCCTGTCAAATGAAAA+TGG + chr3_4:59579768-59579787 None:intergenic 35.0%
!! TTTATGTTGGTAACTTGCCA+TGG - chr3_4:59579885-59579904 Msa0510510:intron 35.0%
!! TTATGTTGGTAACTTGCCAT+GGG - chr3_4:59579886-59579905 Msa0510510:intron 35.0%
CTACTATTATCAACTTCCCA+TGG + chr3_4:59579905-59579924 None:intergenic 35.0%
!! CATGGGAAGTTGATAATAGT+AGG - chr3_4:59579903-59579922 Msa0510510:intron 35.0%
!!! GAGCAAGTTTTTAGTGAACA+TGG - chr3_4:59579929-59579948 Msa0510510:intron 35.0%
! ATAACTCTAGCAGTTGATAC+AGG + chr3_4:59580352-59580371 None:intergenic 35.0%
!!! TAATTTTCTTCTGGAGTAGC+CGG - chr3_4:59580407-59580426 Msa0510510:CDS 35.0%
! GTGGTGATGATGATGATAGA+AGG + chr3_4:59578236-59578255 None:intergenic 40.0%
ATGGTTAGGGATTTGAAGAG+GGG + chr3_4:59578284-59578303 None:intergenic 40.0%
CATGGTTAGGGATTTGAAGA+GGG + chr3_4:59578285-59578304 None:intergenic 40.0%
GGTTTCAGTTTCAGTTTCAG+CGG + chr3_4:59578516-59578535 None:intergenic 40.0%
GAAACTGAAACTGAAACCAC+TGG - chr3_4:59578518-59578537 Msa0510510:CDS 40.0%
! TGATTTTGTTGAACCACCTG+AGG - chr3_4:59578559-59578578 Msa0510510:CDS 40.0%
TGTTACCTCAGCAATCTCAA+CGG + chr3_4:59578663-59578682 None:intergenic 40.0%
!! CATACGGATTGGAGTTTCAA+TGG + chr3_4:59579497-59579516 None:intergenic 40.0%
! CTGGTCCATTTTCATTTGAC+AGG - chr3_4:59579760-59579779 Msa0510510:intron 40.0%
TTCATTTGACAGGACTACGA+TGG - chr3_4:59579770-59579789 Msa0510510:intron 40.0%
! AAGATCGTTGGCTGTTAACA+AGG - chr3_4:59579793-59579812 Msa0510510:intron 40.0%
GTTAACAAGGCTTCTCCTAA+AGG - chr3_4:59579806-59579825 Msa0510510:intron 40.0%
GTAGTCTATGATAGAGAGAC+TGG - chr3_4:59579971-59579990 Msa0510510:intron 40.0%
TTATACCTGACCATCAAGAG+CGG + chr3_4:59580059-59580078 None:intergenic 40.0%
! TTTTATGGGCTCGTGTTGAA+TGG - chr3_4:59580156-59580175 Msa0510510:intron 40.0%
TTTATGGGCTCGTGTTGAAT+GGG - chr3_4:59580157-59580176 Msa0510510:intron 40.0%
TGTGCTTTCATTGCAGAGTT+TGG - chr3_4:59580248-59580267 Msa0510510:CDS 40.0%
CTTTCATTGCAGAGTTTGGA+GGG - chr3_4:59580252-59580271 Msa0510510:CDS 40.0%
TACTTGACGAGCTACTCAAA+AGG + chr3_4:59580325-59580344 None:intergenic 40.0%
GGATAAACCTAGCATGAAAC+CGG + chr3_4:59580429-59580448 None:intergenic 40.0%
GAAAGAGAAAAAGACTGCAG+AGG - chr3_4:59580523-59580542 Msa0510510:CDS 40.0%
! AGTGGTGGAAGTGATAGACA+TGG + chr3_4:59578261-59578280 None:intergenic 45.0%
CCATGGTTAGGGATTTGAAG+AGG + chr3_4:59578286-59578305 None:intergenic 45.0%
CCTCTTCAAATCCCTAACCA+TGG - chr3_4:59578283-59578302 Msa0510510:three_prime_UTR 45.0%
! TTTGGGTTTGGAGTGGAAGA+GGG + chr3_4:59578330-59578349 None:intergenic 45.0%
ATGGAGAGATGGAGATTGAG+GGG + chr3_4:59578380-59578399 None:intergenic 45.0%
GATGGAGAGATGGAGATTGA+GGG + chr3_4:59578381-59578400 None:intergenic 45.0%
TGATGGAGAGATGGAGATTG+AGG + chr3_4:59578382-59578401 None:intergenic 45.0%
!!! GGTTGGTTTTGATGGAGAGA+TGG + chr3_4:59578391-59578410 None:intergenic 45.0%
!!! GAAAGAGCGGTTGGTTTTGA+TGG + chr3_4:59578399-59578418 None:intergenic 45.0%
CCTTCTTGAGCAACGAACAA+GGG + chr3_4:59578425-59578444 None:intergenic 45.0%
AAGCTGGATTGAGTCTCGAT+TGG - chr3_4:59578474-59578493 Msa0510510:three_prime_UTR 45.0%
AGCTGGATTGAGTCTCGATT+GGG - chr3_4:59578475-59578494 Msa0510510:three_prime_UTR 45.0%
TTCAGCAGAATCATCACCAG+TGG + chr3_4:59578537-59578556 None:intergenic 45.0%
!! GCCATGCTTTTTGAACAAGC+CGG - chr3_4:59578635-59578654 Msa0510510:intron 45.0%
! TCCGGCTTGTTCAAAAAGCA+TGG + chr3_4:59578639-59578658 None:intergenic 45.0%
CAAATCCAAAACCACGACTC+CGG + chr3_4:59578796-59578815 None:intergenic 45.0%
AAACTTCTGGACAGCAGACT+CGG + chr3_4:59578843-59578862 None:intergenic 45.0%
ATGACAGGTTCAAAACTGCG+AGG + chr3_4:59579860-59579879 None:intergenic 45.0%
GCTTTCATTGCAGAGTTTGG+AGG - chr3_4:59580251-59580270 Msa0510510:CDS 45.0%
AGAGAAAAAGACTGCAGAGG+TGG - chr3_4:59580526-59580545 Msa0510510:CDS 45.0%
GGAAGTGATAGACATGGTGG+TGG + chr3_4:59578255-59578274 None:intergenic 50.0%
GGTGGAAGTGATAGACATGG+TGG + chr3_4:59578258-59578277 None:intergenic 50.0%
TAGGGATTTGAAGAGGGGAG+TGG + chr3_4:59578279-59578298 None:intergenic 50.0%
! GTTTGGGTTTGGAGTGGAAG+AGG + chr3_4:59578331-59578350 None:intergenic 50.0%
! GAAGAAGGTGGGTTTGGGTT+TGG + chr3_4:59578342-59578361 None:intergenic 50.0%
! AGGGAGAAGAAGGTGGGTTT+GGG + chr3_4:59578347-59578366 None:intergenic 50.0%
! AAGGGAGAAGAAGGTGGGTT+TGG + chr3_4:59578348-59578367 None:intergenic 50.0%
TTTGGAGGGAAGGGAGAAGA+AGG + chr3_4:59578357-59578376 None:intergenic 50.0%
ATTGAGGGGTTTGGAGGGAA+GGG + chr3_4:59578366-59578385 None:intergenic 50.0%
TGGAGATTGAGGGGTTTGGA+GGG + chr3_4:59578371-59578390 None:intergenic 50.0%
ATGGAGATTGAGGGGTTTGG+AGG + chr3_4:59578372-59578391 None:intergenic 50.0%
GAGATGGAGATTGAGGGGTT+TGG + chr3_4:59578375-59578394 None:intergenic 50.0%
CGAACAAGGGAGAGAAAGAG+CGG + chr3_4:59578412-59578431 None:intergenic 50.0%
CCCTTGTTCGTTGCTCAAGA+AGG - chr3_4:59578422-59578441 Msa0510510:three_prime_UTR 50.0%
GCCTTCTTGAGCAACGAACA+AGG + chr3_4:59578426-59578445 None:intergenic 50.0%
AGCTTCTTCGTCTAGAGAGG+TGG + chr3_4:59578459-59578478 None:intergenic 50.0%
ACCTCTCTAGACGAAGAAGC+TGG - chr3_4:59578458-59578477 Msa0510510:three_prime_UTR 50.0%
TCCAGCTTCTTCGTCTAGAG+AGG + chr3_4:59578462-59578481 None:intergenic 50.0%
AGTTTCAGTTTCAGCGGCGT+CGG + chr3_4:59578510-59578529 None:intergenic 50.0%
CTCAGCAATCTCAACGGTTC+CGG + chr3_4:59578657-59578676 None:intergenic 50.0%
AGCAGACTCGGCTTCTTCAA+CGG + chr3_4:59578831-59578850 None:intergenic 50.0%
GGACTACGATGGAAGATCGT+TGG - chr3_4:59579781-59579800 Msa0510510:intron 50.0%
ACTGGTCGATCACGTGGATT+TGG - chr3_4:59579989-59580008 Msa0510510:CDS 50.0%
CATTGCAGAGTTTGGAGGGT+AGG - chr3_4:59580256-59580275 Msa0510510:CDS 50.0%
GGATTTGAAGAGGGGAGTGG+TGG + chr3_4:59578276-59578295 None:intergenic 55.0%
GCAGGAATCGGCCATGGTTA+GGG + chr3_4:59578297-59578316 None:intergenic 55.0%
GGATGAGAGGAGGCAGGAAT+CGG + chr3_4:59578309-59578328 None:intergenic 55.0%
AGTGGAAGAGGGATGAGAGG+AGG + chr3_4:59578319-59578338 None:intergenic 55.0%
TGGAGTGGAAGAGGGATGAG+AGG + chr3_4:59578322-59578341 None:intergenic 55.0%
! AGGTGGGTTTGGGTTTGGAG+TGG + chr3_4:59578337-59578356 None:intergenic 55.0%
GAGGGAAGGGAGAAGAAGGT+GGG + chr3_4:59578353-59578372 None:intergenic 55.0%
GATTGAGGGGTTTGGAGGGA+AGG + chr3_4:59578367-59578386 None:intergenic 55.0%
CAAGGGAGAGAAAGAGCGGT+TGG + chr3_4:59578408-59578427 None:intergenic 55.0%
CGGAACCGTTGAGATTGCTG+AGG - chr3_4:59578655-59578674 Msa0510510:intron 55.0%
! AGAGAGACTGGTCGATCACG+TGG - chr3_4:59579983-59580002 Msa0510510:CDS 55.0%
GATGCCATTGCCGCTCTTGA+TGG - chr3_4:59580046-59580065 Msa0510510:CDS 55.0%
CTGACCATCAAGAGCGGCAA+TGG + chr3_4:59580053-59580072 None:intergenic 55.0%
! CATTGCCGCTCTTGATGGTC+AGG - chr3_4:59580051-59580070 Msa0510510:CDS 55.0%
ACTCAAAAGGAGCCGCGTCT+GGG + chr3_4:59580312-59580331 None:intergenic 55.0%
TACTCAAAAGGAGCCGCGTC+TGG + chr3_4:59580313-59580332 None:intergenic 55.0%
! GGAGTAGCCGGTTTCATGCT+AGG - chr3_4:59580419-59580438 Msa0510510:CDS 55.0%
AGACTGCAGAGGTGGAGAGT+AGG - chr3_4:59580534-59580553 Msa0510510:CDS 55.0%
CAGAGGTGGAGAGTAGGCAT+GGG - chr3_4:59580540-59580559 Msa0510510:CDS 55.0%
AGAGGTGGAGAGTAGGCATG+GGG - chr3_4:59580541-59580560 Msa0510510:CDS 55.0%
GGCAGGAATCGGCCATGGTT+AGG + chr3_4:59578298-59578317 None:intergenic 60.0%
GAAGAGGGATGAGAGGAGGC+AGG + chr3_4:59578315-59578334 None:intergenic 60.0%
GGAGGGAAGGGAGAAGAAGG+TGG + chr3_4:59578354-59578373 None:intergenic 60.0%
AGAGAAACGGACCGGAGTCG+TGG - chr3_4:59578782-59578801 Msa0510510:CDS 60.0%
! ACGGACCGGAGTCGTGGTTT+TGG - chr3_4:59578788-59578807 Msa0510510:CDS 60.0%
CGCTCGGGTCGAGATCCTTT+AGG + chr3_4:59579824-59579843 None:intergenic 60.0%
AGGTGCACGCTCAGTACGCT+CGG + chr3_4:59579840-59579859 None:intergenic 60.0%
! GAGTGAGCGTTGCCGAAGAC+AGG - chr3_4:59580286-59580305 Msa0510510:CDS 60.0%
GCAGAGGTGGAGAGTAGGCA+TGG - chr3_4:59580539-59580558 Msa0510510:CDS 60.0%
GAGGAGGCAGGAATCGGCCA+TGG + chr3_4:59578303-59578322 None:intergenic 65.0%
!! GTTTCAGCGGCGTCGGCAGT+GGG + chr3_4:59578503-59578522 None:intergenic 65.0%
!! AGTTTCAGCGGCGTCGGCAG+TGG + chr3_4:59578504-59578523 None:intergenic 65.0%
GGTGCACGCTCAGTACGCTC+GGG + chr3_4:59579839-59579858 None:intergenic 65.0%
GCCGAAGACAGGCCCAGACG+CGG - chr3_4:59580297-59580316 Msa0510510:CDS 70.0%
GCCGCGTCTGGGCCTGTCTT+CGG + chr3_4:59580301-59580320 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 59578191 59580652 59578191 ID=Msa0510510;Name=Msa0510510
chr3_4 mRNA 59578191 59580652 59578191 ID=Msa0510510-mRNA-1;Parent=Msa0510510;Name=Msa0510510-mRNA-1;_AED=0.04;_eAED=0.04;_QI=69|1|1|1|1|1|4|323|291
chr3_4 exon 59578191 59578579 59578191 ID=Msa0510510-mRNA-1:exon:14031;Parent=Msa0510510-mRNA-1
chr3_4 exon 59578771 59579061 59578771 ID=Msa0510510-mRNA-1:exon:14030;Parent=Msa0510510-mRNA-1
chr3_4 exon 59579972 59580073 59579972 ID=Msa0510510-mRNA-1:exon:14029;Parent=Msa0510510-mRNA-1
chr3_4 exon 59580167 59580652 59580167 ID=Msa0510510-mRNA-1:exon:14028;Parent=Msa0510510-mRNA-1
chr3_4 five_prime_UTR 59580584 59580652 59580584 ID=Msa0510510-mRNA-1:five_prime_utr;Parent=Msa0510510-mRNA-1
chr3_4 CDS 59580167 59580583 59580167 ID=Msa0510510-mRNA-1:cds;Parent=Msa0510510-mRNA-1
chr3_4 CDS 59579972 59580073 59579972 ID=Msa0510510-mRNA-1:cds;Parent=Msa0510510-mRNA-1
chr3_4 CDS 59578771 59579061 59578771 ID=Msa0510510-mRNA-1:cds;Parent=Msa0510510-mRNA-1
chr3_4 CDS 59578514 59578579 59578514 ID=Msa0510510-mRNA-1:cds;Parent=Msa0510510-mRNA-1
chr3_4 three_prime_UTR 59578191 59578513 59578191 ID=Msa0510510-mRNA-1:three_prime_utr;Parent=Msa0510510-mRNA-1
Gene Sequence

>Msa0510510

ATGTCTATCACTTCCACCACTCCCCTCTTCAAATCCCTAACCATGGCCGATTCCTGCCTCCTCTCATCCCTCTTCCACTCCAAACCCAAACCCACCTTCTTCTCCCTTCCCTCCAAACCCCTCAATCTCCATCTCTCCATCAAAACCAACCGCTCTTTCTCTCCCTTGTTCGTTGCTCAAGAAGGCGACACGCTCACCACCTCTCTAGACGAAGAAGCTGGATTGAGTCTCGATTGGGAGCCCACTGCCGACGCCGCTGAAACTGAAACTGAAACCACTGGTGATGATTCTGCTGAAGCTGATTTTGTTGAACCACCTGAGGAAGCAAAATTATTTGTTGGTAATTTGCCTTTTGATGTTGATAGTGAGAAATTGGCCATGCTTTTTGAACAAGCCGGAACCGTTGAGATTGCTGAGGTTATTTATAACAGAGAAACGGACCGGAGTCGTGGTTTTGGATTTGTAACTATGAGTACCGTTGAAGAAGCCGAGTCTGCTGTCCAGAAGTTTAACGCCTATGACTACGATGGAAGATCGTTGGCTGTTAACAAGGCTTCTCCTAAAGGATCTCGACCCGAGCGTACTGAGCGTGCACCTCGCAGTTTTGAACCTGTCATAAGAATTTATGTTGGTAACTTGCCATGGGAAGTTGATAATAGTAGGCTAGAGCAAGTTTTTAGTGAACATGGTAAGGTTGTGAGTGCTCGAGTAGTCTATGATAGAGAGACTGGTCGATCACGTGGATTTGGCTTTGTCACAATGTCCGATGAAACTGAAATGAATGATGCCATTGCCGCTCTTGATGGTCAGAGTTTGGAGGGTAGGACAATAAGAGTGAGCGTTGCCGAAGACAGGCCCAGACGCGGCTCCTTTTGA
Protein sequence

>Msa0510510

MSITSTTPLFKSLTMADSCLLSSLFHSKPKPTFFSLPSKPLNLHLSIKTNRSFSPLFVAQEGDTLTTSLDEEAGLSLDWEPTADAAETETETTGDDSAEADFVEPPEEAKLFVGNLPFDVDSEKLAMLFEQAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAESAVQKFNAYDYDGRSLAVNKASPKGSRPERTERAPRSFEPVIRIYVGNLPWEVDNSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDRPRRGSF*