Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1202170 | XP_003629355.1 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1202170 | sp|Q9FN50|CPP1_ARATH | 38.222 | 225 | 127 | 5 | 61 | 281 | 41 | 257 | 3.21e-43 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001540 | Msa1202170 | 0.828575 | 8.329201e-55 | -8.615850e-47 |
| Msa0026110 | Msa1202170 | 0.800125 | 1.668559e-48 | -8.615850e-47 |
| Msa0037300 | Msa1202170 | 0.812159 | 4.878389e-51 | -8.615850e-47 |
| Msa0046800 | Msa1202170 | 0.807664 | 4.525323e-50 | -8.615850e-47 |
| Msa0073220 | Msa1202170 | 0.809204 | 2.124372e-50 | -8.615850e-47 |
| Msa0112290 | Msa1202170 | 0.812151 | 4.898087e-51 | -8.615850e-47 |
| Msa0112340 | Msa1202170 | 0.807343 | 5.293579e-50 | -8.615850e-47 |
| Msa0620020 | Msa1202170 | 0.814765 | 1.304011e-51 | -8.615850e-47 |
| Msa0624700 | Msa1202170 | 0.884957 | 1.229251e-71 | -8.615850e-47 |
| Msa0645040 | Msa1202170 | 0.817414 | 3.338867e-52 | -8.615850e-47 |
| Msa0682460 | Msa1202170 | 0.835063 | 2.086978e-56 | -8.615850e-47 |
| Msa0684520 | Msa1202170 | 0.820055 | 8.394776e-53 | -8.615850e-47 |
| Msa0705250 | Msa1202170 | 0.822071 | 2.882190e-53 | -8.615850e-47 |
| Msa0706450 | Msa1202170 | 0.819656 | 1.035803e-52 | -8.615850e-47 |
| Msa0707290 | Msa1202170 | 0.822095 | 2.844673e-53 | -8.615850e-47 |
| Msa0729130 | Msa1202170 | 0.801234 | 9.913761e-49 | -8.615850e-47 |
| Msa0738950 | Msa1202170 | 0.832695 | 8.161473e-56 | -8.615850e-47 |
| Msa0748890 | Msa1202170 | 0.800346 | 1.504853e-48 | -8.615850e-47 |
| Msa0752290 | Msa1202170 | 0.801668 | 8.077951e-49 | -8.615850e-47 |
| Msa0790180 | Msa1202170 | 0.822302 | 2.548053e-53 | -8.615850e-47 |
| Msa0790380 | Msa1202170 | 0.829341 | 5.434322e-55 | -8.615850e-47 |
| Msa0832270 | Msa1202170 | 0.818354 | 2.048404e-52 | -8.615850e-47 |
| Msa0131440 | Msa1202170 | 0.839185 | 1.843154e-57 | -8.615850e-47 |
| Msa0175280 | Msa1202170 | 0.806990 | 6.287981e-50 | -8.615850e-47 |
| Msa0178020 | Msa1202170 | 0.807339 | 5.305625e-50 | -8.615850e-47 |
| Msa0182610 | Msa1202170 | 0.806822 | 6.825243e-50 | -8.615850e-47 |
| Msa0188670 | Msa1202170 | 0.828000 | 1.146562e-54 | -8.615850e-47 |
| Msa0216390 | Msa1202170 | 0.804571 | 2.026215e-49 | -8.615850e-47 |
| Msa0233200 | Msa1202170 | 0.800256 | 1.569264e-48 | -8.615850e-47 |
| Msa0234930 | Msa1202170 | 0.803597 | 3.231926e-49 | -8.615850e-47 |
| Msa0379450 | Msa1202170 | 0.836239 | 1.051346e-56 | -8.615850e-47 |
| Msa0380440 | Msa1202170 | 0.821066 | 4.918124e-53 | -8.615850e-47 |
| Msa0383110 | Msa1202170 | 0.817063 | 4.005353e-52 | -8.615850e-47 |
| Msa0412470 | Msa1202170 | 0.804736 | 1.871769e-49 | -8.615850e-47 |
| Msa0415860 | Msa1202170 | 0.822572 | 2.205185e-53 | -8.615850e-47 |
| Msa0423820 | Msa1202170 | 0.853331 | 2.564281e-61 | -8.615850e-47 |
| Msa0455200 | Msa1202170 | 0.803929 | 2.756930e-49 | -8.615850e-47 |
| Msa0463980 | Msa1202170 | 0.800756 | 1.241079e-48 | -8.615850e-47 |
| Msa1013560 | Msa1202170 | 0.822016 | 2.967710e-53 | -8.615850e-47 |
| Msa1032410 | Msa1202170 | 0.812779 | 3.570170e-51 | -8.615850e-47 |
| Msa1074730 | Msa1202170 | 0.849414 | 3.283172e-60 | -8.615850e-47 |
| Msa1083140 | Msa1202170 | 0.806345 | 8.607195e-50 | -8.615850e-47 |
| Msa0256590 | Msa1202170 | 0.817874 | 2.629880e-52 | -8.615850e-47 |
| Msa0258410 | Msa1202170 | 0.826134 | 3.203806e-54 | -8.615850e-47 |
| Msa0270230 | Msa1202170 | 0.830501 | 2.834309e-55 | -8.615850e-47 |
| Msa0273270 | Msa1202170 | 0.803010 | 4.275603e-49 | -8.615850e-47 |
| Msa0273550 | Msa1202170 | 0.820268 | 7.504894e-53 | -8.615850e-47 |
| Msa0294170 | Msa1202170 | 0.816223 | 6.178980e-52 | -8.615850e-47 |
| Msa0295730 | Msa1202170 | 0.822646 | 2.119453e-53 | -8.615850e-47 |
| Msa0296000 | Msa1202170 | 0.801274 | 9.729561e-49 | -8.615850e-47 |
| Msa0307820 | Msa1202170 | 0.836858 | 7.315760e-57 | -8.615850e-47 |
| Msa0308430 | Msa1202170 | 0.804360 | 2.242828e-49 | -8.615850e-47 |
| Msa0335740 | Msa1202170 | 0.838849 | 2.252423e-57 | -8.615850e-47 |
| Msa1110350 | Msa1202170 | 0.837426 | 5.236264e-57 | -8.615850e-47 |
| Msa1118390 | Msa1202170 | 0.816411 | 5.606090e-52 | -8.615850e-47 |
| Msa1126310 | Msa1202170 | 0.808396 | 3.161754e-50 | -8.615850e-47 |
| Msa1131300 | Msa1202170 | 0.802497 | 5.455202e-49 | -8.615850e-47 |
| Msa1154020 | Msa1202170 | 0.838015 | 3.695864e-57 | -8.615850e-47 |
| Msa1177960 | Msa1202170 | 0.841375 | 4.935818e-58 | -8.615850e-47 |
| Msa1202170 | Msa1208630 | 0.849071 | 4.091814e-60 | -8.615850e-47 |
| Msa1202170 | Msa1208750 | 0.810765 | 9.793953e-51 | -8.615850e-47 |
| Msa1202170 | Msa1220680 | 0.801857 | 7.387959e-49 | -8.615850e-47 |
| Msa1202170 | Msa1235140 | 0.813833 | 2.094874e-51 | -8.615850e-47 |
| Msa1202170 | Msa1237750 | 0.834150 | 3.540228e-56 | -8.615850e-47 |
| Msa1202170 | Msa1250500 | 0.800705 | 1.271708e-48 | -8.615850e-47 |
| Msa1202170 | Msa1258940 | 0.830294 | 3.183781e-55 | -8.615850e-47 |
| Msa1202170 | Msa1264670 | 0.805036 | 1.620355e-49 | -8.615850e-47 |
| Msa1202170 | Msa1267560 | 0.827066 | 1.920221e-54 | -8.615850e-47 |
| Msa1202170 | Msa1272200 | 0.868714 | 5.316646e-66 | -8.615850e-47 |
| Msa1202170 | Msa1294940 | 0.983263 | 2.873747e-157 | -8.615850e-47 |
| Msa1202170 | Msa1297500 | 0.805930 | 1.052164e-49 | -8.615850e-47 |
| Msa1202170 | Msa1305650 | 0.812245 | 4.671083e-51 | -8.615850e-47 |
| Msa1202170 | Msa1316390 | 0.811701 | 6.137130e-51 | -8.615850e-47 |
| Msa1202170 | Msa1318180 | 0.815746 | 7.894372e-52 | -8.615850e-47 |
| Msa1202170 | Msa1375120 | 0.806911 | 6.535357e-50 | -8.615850e-47 |
| Msa1202170 | Msa1375600 | 0.828364 | 9.368848e-55 | -8.615850e-47 |
| Msa1202170 | Msa1376560 | 0.824548 | 7.606217e-54 | -8.615850e-47 |
| Msa1202170 | Msa1376680 | 0.816103 | 6.571345e-52 | -8.615850e-47 |
| Msa1202170 | Msa1388610 | 0.829725 | 4.383443e-55 | -8.615850e-47 |
| Msa1202170 | Msa1391430 | 0.821573 | 3.757726e-53 | -8.615850e-47 |
| Msa1202170 | Msa1400830 | 0.814058 | 1.869518e-51 | -8.615850e-47 |
| Msa1202170 | Msa1403590 | 0.824832 | 6.517719e-54 | -8.615850e-47 |
| Msa1202170 | Msa1411390 | 0.806795 | 6.916640e-50 | -8.615850e-47 |
| Msa1202170 | Msa1411690 | 0.842029 | 3.318530e-58 | -8.615850e-47 |
| Msa1202170 | Msa1412750 | 0.813734 | 2.203301e-51 | -8.615850e-47 |
| Msa1202170 | Msa1418600 | 0.831650 | 1.480437e-55 | -8.615850e-47 |
| Msa1202170 | Msa1426880 | 0.802047 | 6.751815e-49 | -8.615850e-47 |
| Msa1202170 | Msa1437320 | 0.807308 | 5.385482e-50 | -8.615850e-47 |
| Msa1202170 | Msa1439880 | 0.807897 | 4.038907e-50 | -8.615850e-47 |
| Msa1202170 | Msa1443280 | 0.827912 | 1.203958e-54 | -8.615850e-47 |
| Msa1202170 | Msa1455560 | 0.811597 | 6.464472e-51 | -8.615850e-47 |
| Msa1202170 | Msa1456390 | 0.824189 | 9.238033e-54 | -8.615850e-47 |
| Msa0510510 | Msa1202170 | 0.803642 | 3.162680e-49 | -8.615850e-47 |
| Msa0510540 | Msa1202170 | 0.818647 | 1.757696e-52 | -8.615850e-47 |
| Msa0515730 | Msa1202170 | 0.885606 | 7.033724e-72 | -8.615850e-47 |
| Msa0524570 | Msa1202170 | 0.816748 | 4.713270e-52 | -8.615850e-47 |
| Msa0583180 | Msa1202170 | 0.863612 | 2.198253e-64 | -8.615850e-47 |
| Msa0879820 | Msa1202170 | 0.835000 | 2.164673e-56 | -8.615850e-47 |
| Msa0969050 | Msa1202170 | 0.812257 | 4.644551e-51 | -8.615850e-47 |
| Msa0973380 | Msa1202170 | 0.802443 | 5.597215e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1202170 | MtrunA17_Chr8g0372221 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 561 |
| Msa1202170 | MtrunA17_Chr4g0062111 | 39.196 | 199 | 117 | 3 | 85 | 281 | 54 | 250 | 2.11e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1202170 | AT3G51140.1 | 63.241 | 253 | 86 | 4 | 30 | 281 | 31 | 277 | 1.48e-112 | 326 |
| Msa1202170 | AT3G51140.2 | 60.099 | 203 | 76 | 3 | 30 | 231 | 31 | 229 | 2.24e-82 | 248 |
| Msa1202170 | AT5G23040.2 | 38.222 | 225 | 127 | 5 | 61 | 281 | 41 | 257 | 3.27e-44 | 151 |
| Msa1202170 | AT5G23040.1 | 38.222 | 225 | 127 | 5 | 61 | 281 | 41 | 257 | 3.27e-44 | 151 |
Find 79 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATGAGCATACATATTT+TGG | 0.063893 | 8_1:+55685438 | Msa1202170:three_prime_UTR |
| TATATAACAATGATTGTATC+TGG | 0.187129 | 8_1:+55682460 | Msa1202170:exon |
| CGAGGCAACGAGGAGGTAAT+TGG | 0.227784 | 8_1:-55682510 | None:intergenic |
| AGGATAAGAGCTTTGCTTTA+TGG | 0.229239 | 8_1:+55684561 | Msa1202170:CDS |
| ATGTCCAATGTACGTAAATT+TGG | 0.262656 | 8_1:-55685491 | None:intergenic |
| GCCCTTGGTCCCTTGATTAT+AGG | 0.265287 | 8_1:-55685216 | None:intergenic |
| GCCTCGAATCACGCCGTGTT+CGG | 0.266223 | 8_1:+55682527 | Msa1202170:CDS |
| GGATAAGAGCTTTGCTTTAT+GGG | 0.286176 | 8_1:+55684562 | Msa1202170:CDS |
| CTTATTCCAAGTCGTTTATA+CGG | 0.293016 | 8_1:-55684168 | None:intergenic |
| GTCATACTCATGTCAAAATA+AGG | 0.304751 | 8_1:-55685516 | None:intergenic |
| GTCAATAACTATGATGTTAT+AGG | 0.321475 | 8_1:-55685556 | None:intergenic |
| GGATCGCTCACATTAATTCT+TGG | 0.335746 | 8_1:-55684147 | None:intergenic |
| AGATTGAGGAAGCAGGGTTT+TGG | 0.348685 | 8_1:+55681450 | None:intergenic |
| CGAGGAAGGGCCAACACTTC+AGG | 0.348949 | 8_1:+55684485 | Msa1202170:CDS |
| CCTCGAATCACGCCGTGTTC+GGG | 0.353082 | 8_1:+55682528 | Msa1202170:CDS |
| GCCCTGCATATTTCTGAATC+AGG | 0.356185 | 8_1:-55684233 | None:intergenic |
| GAGGCAACGAGGAGGTAATT+GGG | 0.389953 | 8_1:-55682509 | None:intergenic |
| GCTGTTGGGAACCTTCTTGA+TGG | 0.390968 | 8_1:+55685173 | Msa1202170:CDS |
| CAATCAATCCCGATTCGTTC+AGG | 0.407889 | 8_1:+55684365 | Msa1202170:CDS |
| CTCTGACAGCCTGAACGAAT+CGG | 0.408522 | 8_1:-55684374 | None:intergenic |
| GATCGCTCACATTAATTCTT+GGG | 0.413368 | 8_1:-55684146 | None:intergenic |
| CAAGGGACCAAGGGCATTTG+AGG | 0.437968 | 8_1:+55685224 | Msa1202170:CDS |
| ATAGGCAACAAGAATAGCTT+TGG | 0.445585 | 8_1:-55685538 | None:intergenic |
| CTTTAGCCTTCATATAAGAT+AGG | 0.451503 | 8_1:-55685292 | None:intergenic |
| TCCTCCCATTCCTATAATCA+AGG | 0.453208 | 8_1:+55685206 | Msa1202170:CDS |
| AGTGCTATGGGTGCTTCATT+TGG | 0.458480 | 8_1:+55682776 | Msa1202170:CDS |
| GCTTCCAAATTTACGTACAT+TGG | 0.461390 | 8_1:+55685487 | Msa1202170:three_prime_UTR |
| TTGAGAATGCACAGGGAAGA+AGG | 0.461514 | 8_1:-55681499 | None:intergenic |
| TGGTCCCTTGATTATAGGAA+TGG | 0.471280 | 8_1:-55685211 | None:intergenic |
| TCTGACAGCCTGAACGAATC+GGG | 0.472429 | 8_1:-55684373 | None:intergenic |
| CTGAAGTGTTGGCCCTTCCT+CGG | 0.475487 | 8_1:-55684484 | None:intergenic |
| CATCGACCTATCTTATATGA+AGG | 0.484004 | 8_1:+55685286 | Msa1202170:CDS |
| AGTGTTGGCCCTTCCTCGGT+TGG | 0.487936 | 8_1:-55684480 | None:intergenic |
| TCAATTGGTCAGAAGTGCTA+TGG | 0.489625 | 8_1:+55682763 | Msa1202170:CDS |
| TTCCTGATTCAGAAATATGC+AGG | 0.491805 | 8_1:+55684231 | Msa1202170:CDS |
| TGTGCATTCTCAAAATCATC+AGG | 0.500601 | 8_1:+55681509 | Msa1202170:five_prime_UTR |
| TGATAGACGACAAGTTCAAT+TGG | 0.501549 | 8_1:+55682748 | Msa1202170:CDS |
| GGTCCCTTGATTATAGGAAT+GGG | 0.504384 | 8_1:-55685210 | None:intergenic |
| TATATGATCGGCTGAAGAGC+AGG | 0.515820 | 8_1:+55684541 | Msa1202170:CDS |
| ATATAACAATGATTGTATCT+GGG | 0.516139 | 8_1:+55682461 | Msa1202170:exon |
| TGGGCATACCTTTCCACACT+GGG | 0.516470 | 8_1:-55682598 | None:intergenic |
| GACTCAATTGAATCTACACT+TGG | 0.523228 | 8_1:-55684261 | None:intergenic |
| TTTATAATGAATATAGTGGA+TGG | 0.536659 | 8_1:-55684411 | None:intergenic |
| GATATTGCAACCTGAAGTGT+TGG | 0.546273 | 8_1:-55684495 | None:intergenic |
| CAAATCCCGATTCAACAAAA+CGG | 0.547555 | 8_1:-55685394 | None:intergenic |
| GTTCTCTTTCCAACCGAGGA+AGG | 0.550887 | 8_1:+55684471 | Msa1202170:CDS |
| TGAGAATGCACAGGGAAGAA+GGG | 0.558981 | 8_1:-55681498 | None:intergenic |
| TCCTATAATCAAGGGACCAA+GGG | 0.560682 | 8_1:+55685215 | Msa1202170:CDS |
| GTGATCACCTCAAATGCCCT+TGG | 0.562552 | 8_1:-55685231 | None:intergenic |
| AGGCAACGAGGAGGTAATTG+GGG | 0.569451 | 8_1:-55682508 | None:intergenic |
| AGGGATAAACACTTTCCAAA+GGG | 0.569755 | 8_1:-55681479 | None:intergenic |
| CAATTGGTCAGAAGTGCTAT+GGG | 0.571474 | 8_1:+55682764 | Msa1202170:CDS |
| CAACGTATTTCGTATATGAT+CGG | 0.574288 | 8_1:+55684529 | Msa1202170:CDS |
| AGCGATCCGTATAAACGACT+TGG | 0.578474 | 8_1:+55684162 | Msa1202170:CDS |
| TTCTCTTTCCAACCGAGGAA+GGG | 0.587448 | 8_1:+55684472 | Msa1202170:CDS |
| CCTCCCATTCCTATAATCAA+GGG | 0.591184 | 8_1:+55685207 | Msa1202170:CDS |
| TTGGGCATACCTTTCCACAC+TGG | 0.594896 | 8_1:-55682599 | None:intergenic |
| CCCTTGATTATAGGAATGGG+AGG | 0.596769 | 8_1:-55685207 | None:intergenic |
| TTCCTATAATCAAGGGACCA+AGG | 0.602791 | 8_1:+55685214 | Msa1202170:CDS |
| AAGAAGAAATTCAAGCAGCT+AGG | 0.603879 | 8_1:+55684205 | Msa1202170:CDS |
| AAGTGTAGATTCAATTGAGT+CGG | 0.607184 | 8_1:+55684263 | Msa1202170:CDS |
| TAAACGACTTGGAATAAGCA+AGG | 0.615337 | 8_1:+55684173 | Msa1202170:CDS |
| AAGGGATAAACACTTTCCAA+AGG | 0.617286 | 8_1:-55681480 | None:intergenic |
| AATTACTGACACCATCAAGA+AGG | 0.623704 | 8_1:-55685184 | None:intergenic |
| TCTCAATCTGAATGCCGCGG+CGG | 0.636482 | 8_1:+55685322 | Msa1202170:three_prime_UTR |
| GACCGTTCTCTTTCCAACCG+AGG | 0.637405 | 8_1:+55684467 | Msa1202170:CDS |
| AGAATAGAGAACACAAGTTG+AGG | 0.637460 | 8_1:-55682395 | None:intergenic |
| TCCTGATTCAGAAATATGCA+GGG | 0.647834 | 8_1:+55684232 | Msa1202170:CDS |
| AAGGACAGCGTTTCCCAGTG+TGG | 0.653221 | 8_1:+55682585 | Msa1202170:CDS |
| TTCCTCGGTTGGAAAGAGAA+CGG | 0.656823 | 8_1:-55684469 | None:intergenic |
| GATATGTCAAATGATTCTGC+TGG | 0.657645 | 8_1:+55682800 | Msa1202170:CDS |
| GTATCTCAATCTGAATGCCG+CGG | 0.659897 | 8_1:+55685319 | Msa1202170:three_prime_UTR |
| TGGCTGGTAAATGTATACAA+AGG | 0.664469 | 8_1:+55682566 | Msa1202170:CDS |
| AAAATGACATGACCCGAACA+CGG | 0.665683 | 8_1:-55682540 | None:intergenic |
| ATGATTGTATCTGGGTTGAG+TGG | 0.684151 | 8_1:+55682469 | Msa1202170:CDS |
| GGCAACGAGGAGGTAATTGG+GGG | 0.687219 | 8_1:-55682507 | None:intergenic |
| CGGCGTGATTCGAGGCAACG+AGG | 0.707572 | 8_1:-55682520 | None:intergenic |
| CGTGATTCGAGGCAACGAGG+AGG | 0.732059 | 8_1:-55682517 | None:intergenic |
| TCTTCTGCTAAAATCCGCCG+CGG | 0.754859 | 8_1:-55685336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTATAGAATGAATT+TGG | + | chr8_1:55681855-55681874 | Msa1202170:intron | 10.0% |
| !!! | TATTTTTATAGAATGAATTT+GGG | + | chr8_1:55681856-55681875 | Msa1202170:intron | 10.0% |
| !! | TATTTATCATAATTTATACG+AGG | + | chr8_1:55681746-55681765 | Msa1202170:intron | 15.0% |
| !!! | GTGTTATTTTTATATATTTG+AGG | + | chr8_1:55682243-55682262 | Msa1202170:intron | 15.0% |
| !! | ATATTTCATGATACATAAAA+TGG | + | chr8_1:55682854-55682873 | Msa1202170:intron | 15.0% |
| !!! | AGTTTTTATAATGAATATAG+TGG | - | chr8_1:55684418-55684437 | None:intergenic | 15.0% |
| !!! | AAAAAAAATAGATTTTGAGT+TGG | + | chr8_1:55684722-55684741 | Msa1202170:intron | 15.0% |
| !!! | TCTATTTTTTTCTAAACATA+AGG | - | chr8_1:55684860-55684879 | None:intergenic | 15.0% |
| !!! | GTTTAGAAAAAAATAGATTT+TGG | + | chr8_1:55684863-55684882 | Msa1202170:intron | 15.0% |
| !! | TTTAAAAAATCCAAAACAAA+CGG | + | chr8_1:55685016-55685035 | Msa1202170:intron | 15.0% |
| !!! | TGATAACATATGTTTTATTA+TGG | + | chr8_1:55685259-55685278 | Msa1202170:CDS | 15.0% |
| !!! | GATAACATATGTTTTATTAT+GGG | + | chr8_1:55685260-55685279 | Msa1202170:CDS | 15.0% |
| !! | TCATTCTATAAAAATAAGAG+CGG | - | chr8_1:55681852-55681871 | None:intergenic | 20.0% |
| !!! | TTTTGTTAAGATTTTCACAT+TGG | + | chr8_1:55682058-55682077 | Msa1202170:intron | 20.0% |
| !! | ATTGTTATATAAAAATCTCC+AGG | - | chr8_1:55682451-55682470 | None:intergenic | 20.0% |
| !! | TATATAACAATGATTGTATC+TGG | + | chr8_1:55682460-55682479 | Msa1202170:exon | 20.0% |
| !! | ATATAACAATGATTGTATCT+GGG | + | chr8_1:55682461-55682480 | Msa1202170:exon | 20.0% |
| !! | TCAAAAAGTAATGATTCATT+GGG | - | chr8_1:55682620-55682639 | None:intergenic | 20.0% |
| !! | TTCAAAAAGTAATGATTCAT+TGG | - | chr8_1:55682621-55682640 | None:intergenic | 20.0% |
| !!! | ATTATTGTAGAAGAAAGTAT+AGG | + | chr8_1:55683134-55683153 | Msa1202170:intron | 20.0% |
| !! | AGTAAATCTATTGATATGAA+AGG | - | chr8_1:55683372-55683391 | None:intergenic | 20.0% |
| !! | TTTCATATCAATAGATTTAC+TGG | + | chr8_1:55683371-55683390 | Msa1202170:intron | 20.0% |
| !! | TTCATATCAATAGATTTACT+GGG | + | chr8_1:55683372-55683391 | Msa1202170:intron | 20.0% |
| !! | TATGAATAACTATCAAGAAA+GGG | - | chr8_1:55683785-55683804 | None:intergenic | 20.0% |
| !! | TTATGAATAACTATCAAGAA+AGG | - | chr8_1:55683786-55683805 | None:intergenic | 20.0% |
| !! | ACACTAAACATTAAATAAGT+GGG | - | chr8_1:55683818-55683837 | None:intergenic | 20.0% |
| !!! | CTTATTGTTGGTTTTATATA+AGG | - | chr8_1:55684073-55684092 | None:intergenic | 20.0% |
| !!! | TTTTGTTGATGTCAATTTTT+GGG | - | chr8_1:55684332-55684351 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGATGTCAATTTT+TGG | - | chr8_1:55684333-55684352 | None:intergenic | 20.0% |
| !! | TTGACATCAACAAAAAAATT+AGG | + | chr8_1:55684337-55684356 | Msa1202170:CDS | 20.0% |
| !! | TGACATCAACAAAAAAATTA+GGG | + | chr8_1:55684338-55684357 | Msa1202170:CDS | 20.0% |
| !!! | TTTATAATGAATATAGTGGA+TGG | - | chr8_1:55684414-55684433 | None:intergenic | 20.0% |
| !! | ATTCATTATAAAAACTTCAC+TGG | + | chr8_1:55684422-55684441 | Msa1202170:CDS | 20.0% |
| !! | TTAAAAAATCCAAAACAAAC+GGG | + | chr8_1:55685017-55685036 | Msa1202170:intron | 20.0% |
| !! | CTATAATCTTATGTTTTTCG+TGG | + | chr8_1:55681935-55681954 | Msa1202170:intron | 25.0% |
| ! | ACAACAACATATTCTAGTAT+TGG | - | chr8_1:55681962-55681981 | None:intergenic | 25.0% |
| ! | GTTTATTTCAACAAATTGAG+CGG | + | chr8_1:55682021-55682040 | Msa1202170:intron | 25.0% |
| ! | ACATTGGATATGTTTATAAG+TGG | + | chr8_1:55682074-55682093 | Msa1202170:intron | 25.0% |
| ! | CATTGGATATGTTTATAAGT+GGG | + | chr8_1:55682075-55682094 | Msa1202170:intron | 25.0% |
| ! | ATTGGATATGTTTATAAGTG+GGG | + | chr8_1:55682076-55682095 | Msa1202170:intron | 25.0% |
| ! | ATATATTTGAGGAACTAAGT+AGG | + | chr8_1:55682254-55682273 | Msa1202170:intron | 25.0% |
| ! | CAGGTAAACAAAGATAAATA+TGG | - | chr8_1:55682333-55682352 | None:intergenic | 25.0% |
| !!! | GAATCATTACTTTTTGAACT+TGG | + | chr8_1:55682623-55682642 | Msa1202170:intron | 25.0% |
| ! | TAAAATGGATCTAGTAAAAC+TGG | + | chr8_1:55682869-55682888 | Msa1202170:intron | 25.0% |
| !!! | GTATGTTTTCTGAAACAATA+CGG | + | chr8_1:55682907-55682926 | Msa1202170:intron | 25.0% |
| !!! | TATGTTTTCTGAAACAATAC+GGG | + | chr8_1:55682908-55682927 | Msa1202170:intron | 25.0% |
| ! | AAATGATTCTGTGATCATTA+TGG | + | chr8_1:55682954-55682973 | Msa1202170:intron | 25.0% |
| !!! | TAGATTACATTTTTTTCCTG+TGG | + | chr8_1:55683000-55683019 | Msa1202170:intron | 25.0% |
| !! | AAATTAGGAATCAGTTTTCT+TGG | + | chr8_1:55683165-55683184 | Msa1202170:intron | 25.0% |
| ! | TACAAAACATCAATCAAACA+AGG | - | chr8_1:55683302-55683321 | None:intergenic | 25.0% |
| ! | TTAAAAGAACAAAAGCAGAA+AGG | - | chr8_1:55683410-55683429 | None:intergenic | 25.0% |
| ! | ATGAATAACTATCAAGAAAG+GGG | - | chr8_1:55683784-55683803 | None:intergenic | 25.0% |
| ! | CACACTAAACATTAAATAAG+TGG | - | chr8_1:55683819-55683838 | None:intergenic | 25.0% |
| ! | TAAAATGTTCACATATGACA+TGG | - | chr8_1:55683899-55683918 | None:intergenic | 25.0% |
| ! | ATTCAAATATCATACGGATA+AGG | - | chr8_1:55684048-55684067 | None:intergenic | 25.0% |
| ! | AAGGTGATTCAAATATCATA+CGG | - | chr8_1:55684054-55684073 | None:intergenic | 25.0% |
| ! | GTTAAGCTATAACTTATTGT+TGG | - | chr8_1:55684085-55684104 | None:intergenic | 25.0% |
| !!! | TCATTTTGATAGCATAACTT+AGG | + | chr8_1:55684680-55684699 | Msa1202170:intron | 25.0% |
| !!! | CATTTTGATAGCATAACTTA+GGG | + | chr8_1:55684681-55684700 | Msa1202170:intron | 25.0% |
| !! | TGAAATAGCTTTTCATTTTG+AGG | + | chr8_1:55684896-55684915 | Msa1202170:intron | 25.0% |
| !!! | ATATCATTTTGATGCCTTTA+TGG | + | chr8_1:55685073-55685092 | Msa1202170:intron | 25.0% |
| !! | TTGAATGAGCATACATATTT+TGG | + | chr8_1:55685438-55685457 | Msa1202170:three_prime_UTR | 25.0% |
| !! | TGAATGAGCATACATATTTT+GGG | + | chr8_1:55685439-55685458 | Msa1202170:three_prime_UTR | 25.0% |
| !!! | TACATATTTTGGGATTTTAG+AGG | + | chr8_1:55685449-55685468 | Msa1202170:three_prime_UTR | 25.0% |
| ! | GTCAATAACTATGATGTTAT+AGG | - | chr8_1:55685559-55685578 | None:intergenic | 25.0% |
| !!! | GTGAATTTTTTTCATGAGAT+TGG | + | chr8_1:55685627-55685646 | Msa1202170:intron | 25.0% |
| !! | TTTATTGAGTTGAACACACT+AGG | + | chr8_1:55681890-55681909 | Msa1202170:intron | 30.0% |
| ATGCAAATTTAGCATAAGCA+AGG | - | chr8_1:55681990-55682009 | None:intergenic | 30.0% | |
| !! | ATTATCTTCGGTGTCAATTT+AGG | - | chr8_1:55682148-55682167 | None:intergenic | 30.0% |
| TTAGTTTAGGGATTAAATCG+AGG | + | chr8_1:55682287-55682306 | Msa1202170:intron | 30.0% | |
| TAGTTTAGGGATTAAATCGA+GGG | + | chr8_1:55682288-55682307 | Msa1202170:intron | 30.0% | |
| TCACAAAGCAAAAACAGATA+GGG | + | chr8_1:55682417-55682436 | Msa1202170:five_prime_UTR | 30.0% | |
| TGAACTTGGAACTTTATGTA+AGG | + | chr8_1:55682637-55682656 | Msa1202170:intron | 30.0% | |
| !! | AAGGTTCATGTTTTGTTGAA+TGG | + | chr8_1:55682656-55682675 | Msa1202170:intron | 30.0% |
| TAATCTAGGAGATGAAAAAC+TGG | - | chr8_1:55682723-55682742 | None:intergenic | 30.0% | |
| !! | CGTCTATCACATTTTAATCT+AGG | - | chr8_1:55682737-55682756 | None:intergenic | 30.0% |
| TTCTTCGTCTTCATAATTGT+TGG | + | chr8_1:55683056-55683075 | Msa1202170:intron | 30.0% | |
| ! | TAGAAGAAAGTATAGGAGTA+TGG | + | chr8_1:55683141-55683160 | Msa1202170:intron | 30.0% |
| ! | AGAAGAAAGTATAGGAGTAT+GGG | + | chr8_1:55683142-55683161 | Msa1202170:intron | 30.0% |
| ! | TTCTTGGTAGTTAGTTAGTT+AGG | + | chr8_1:55683181-55683200 | Msa1202170:intron | 30.0% |
| GTAGTTAGTTAGTTAGGATT+TGG | + | chr8_1:55683187-55683206 | Msa1202170:intron | 30.0% | |
| !!! | GTGGTTGGTTTTTTTGTTTT+AGG | + | chr8_1:55683213-55683232 | Msa1202170:intron | 30.0% |
| TATCAATAGATTTACTGGGA+CGG | + | chr8_1:55683376-55683395 | Msa1202170:intron | 30.0% | |
| !! | GGGAAAATTGTTTTTCAGTT+TGG | + | chr8_1:55683494-55683513 | Msa1202170:intron | 30.0% |
| ! | AGTTTCTTTTTCTTGACATG+TGG | + | chr8_1:55683520-55683539 | Msa1202170:intron | 30.0% |
| ! | GTTTCTTTTTCTTGACATGT+GGG | + | chr8_1:55683521-55683540 | Msa1202170:intron | 30.0% |
| ! | TTTCTTTTTCTTGACATGTG+GGG | + | chr8_1:55683522-55683541 | Msa1202170:intron | 30.0% |
| TCAGTTAAACAACTGCTTTA+TGG | + | chr8_1:55683562-55683581 | Msa1202170:intron | 30.0% | |
| CAGTTAAACAACTGCTTTAT+GGG | + | chr8_1:55683563-55683582 | Msa1202170:intron | 30.0% | |
| CATGTGAAAACTTAACAAGA+GGG | - | chr8_1:55683719-55683738 | None:intergenic | 30.0% | |
| TCATGTGAAAACTTAACAAG+AGG | - | chr8_1:55683720-55683739 | None:intergenic | 30.0% | |
| AGAGAGATTCTGATATGATA+AGG | - | chr8_1:55683750-55683769 | None:intergenic | 30.0% | |
| TGAATAACTATCAAGAAAGG+GGG | - | chr8_1:55683783-55683802 | None:intergenic | 30.0% | |
| ! | CAATTTTCAACTAAACCAGA+GGG | - | chr8_1:55683952-55683971 | None:intergenic | 30.0% |
| ! | ACAATTTTCAACTAAACCAG+AGG | - | chr8_1:55683953-55683972 | None:intergenic | 30.0% |
| CTTATTCCAAGTCGTTTATA+CGG | - | chr8_1:55684171-55684190 | None:intergenic | 30.0% | |
| AAGTGTAGATTCAATTGAGT+CGG | + | chr8_1:55684263-55684282 | Msa1202170:CDS | 30.0% | |
| CAACGTATTTCGTATATGAT+CGG | + | chr8_1:55684529-55684548 | Msa1202170:CDS | 30.0% | |
| !! | AAATGAAAAGTGCTCAACAA+TGG | - | chr8_1:55684666-55684685 | None:intergenic | 30.0% |
| ATGTCATACAATGAGAACAA+GGG | - | chr8_1:55685043-55685062 | None:intergenic | 30.0% | |
| AATGTCATACAATGAGAACA+AGG | - | chr8_1:55685044-55685063 | None:intergenic | 30.0% | |
| ! | CTTTAGCCTTCATATAAGAT+AGG | - | chr8_1:55685295-55685314 | None:intergenic | 30.0% |
| ATGTCCAATGTACGTAAATT+TGG | - | chr8_1:55685494-55685513 | None:intergenic | 30.0% | |
| GTCATACTCATGTCAAAATA+AGG | - | chr8_1:55685519-55685538 | None:intergenic | 30.0% | |
| AGGGATAAACACTTTCCAAA+GGG | - | chr8_1:55681482-55681501 | None:intergenic | 35.0% | |
| AAGGGATAAACACTTTCCAA+AGG | - | chr8_1:55681483-55681502 | None:intergenic | 35.0% | |
| !! | GATGATTTTGAGAATGCACA+GGG | - | chr8_1:55681509-55681528 | None:intergenic | 35.0% |
| !! | TGATGATTTTGAGAATGCAC+AGG | - | chr8_1:55681510-55681529 | None:intergenic | 35.0% |
| TGTGCATTCTCAAAATCATC+AGG | + | chr8_1:55681509-55681528 | Msa1202170:five_prime_UTR | 35.0% | |
| TTTGGCGTTAGAAAAAAAGG+GGG | - | chr8_1:55681567-55681586 | None:intergenic | 35.0% | |
| CTTTGGCGTTAGAAAAAAAG+GGG | - | chr8_1:55681568-55681587 | None:intergenic | 35.0% | |
| CCTTTGGCGTTAGAAAAAAA+GGG | - | chr8_1:55681569-55681588 | None:intergenic | 35.0% | |
| ACCTTTGGCGTTAGAAAAAA+AGG | - | chr8_1:55681570-55681589 | None:intergenic | 35.0% | |
| ! | GTAGAAAGTGTGTTTACCTT+TGG | - | chr8_1:55681585-55681604 | None:intergenic | 35.0% |
| TTGAATAACTAGTGCAGTAG+TGG | - | chr8_1:55681692-55681711 | None:intergenic | 35.0% | |
| ! | ATCGATTCTGTCGTTTATGT+GGG | + | chr8_1:55681793-55681812 | Msa1202170:intron | 35.0% |
| ! | ACAAATTGAGCGGTGTTTTA+TGG | + | chr8_1:55682031-55682050 | Msa1202170:intron | 35.0% |
| AGAATAGAGAACACAAGTTG+AGG | - | chr8_1:55682398-55682417 | None:intergenic | 35.0% | |
| CTCACAAAGCAAAAACAGAT+AGG | + | chr8_1:55682416-55682435 | Msa1202170:five_prime_UTR | 35.0% | |
| !!! | ACAGATAGGGTTTTATTTCC+TGG | + | chr8_1:55682430-55682449 | Msa1202170:five_prime_UTR | 35.0% |
| TGGCTGGTAAATGTATACAA+AGG | + | chr8_1:55682566-55682585 | Msa1202170:CDS | 35.0% | |
| TTCTGTAAATTGACAGGGTA+AGG | - | chr8_1:55682700-55682719 | None:intergenic | 35.0% | |
| !! | ACTGGTTCTGTAAATTGACA+GGG | - | chr8_1:55682705-55682724 | None:intergenic | 35.0% |
| !! | AACTGGTTCTGTAAATTGAC+AGG | - | chr8_1:55682706-55682725 | None:intergenic | 35.0% |
| TGATAGACGACAAGTTCAAT+TGG | + | chr8_1:55682748-55682767 | Msa1202170:CDS | 35.0% | |
| GATATGTCAAATGATTCTGC+TGG | + | chr8_1:55682800-55682819 | Msa1202170:CDS | 35.0% | |
| CTGTGATCATTATGGATGTT+TGG | + | chr8_1:55682962-55682981 | Msa1202170:intron | 35.0% | |
| !!! | CTATTTTAGTTCAGCTTCTC+AGG | - | chr8_1:55683084-55683103 | None:intergenic | 35.0% |
| CTGAGAAGCTGAACTAAAAT+AGG | + | chr8_1:55683082-55683101 | Msa1202170:intron | 35.0% | |
| ! | GTATAGGAGTATGGGAAATT+AGG | + | chr8_1:55683150-55683169 | Msa1202170:intron | 35.0% |
| ! | GTTAGTTAGGATTTGGTTAG+TGG | + | chr8_1:55683194-55683213 | Msa1202170:intron | 35.0% |
| CTGTGCACAATAAGGATTAA+AGG | - | chr8_1:55683254-55683273 | None:intergenic | 35.0% | |
| CTTTAATCCTTATTGTGCAC+AGG | + | chr8_1:55683252-55683271 | Msa1202170:intron | 35.0% | |
| AAAAGATACTCTCTTCACAC+TGG | - | chr8_1:55683348-55683367 | None:intergenic | 35.0% | |
| TAAACCAGAAGGAGTTCAAA+GGG | + | chr8_1:55683474-55683493 | Msa1202170:intron | 35.0% | |
| TGTGAAAACTTAACACGAGA+GGG | - | chr8_1:55683660-55683679 | None:intergenic | 35.0% | |
| ATGTGAAAACTTAACACGAG+AGG | - | chr8_1:55683661-55683680 | None:intergenic | 35.0% | |
| AATAACTATCAAGAAAGGGG+GGG | - | chr8_1:55683781-55683800 | None:intergenic | 35.0% | |
| GAATAACTATCAAGAAAGGG+GGG | - | chr8_1:55683782-55683801 | None:intergenic | 35.0% | |
| TGTGTTTACTTGCATGTCTT+AGG | + | chr8_1:55683977-55683996 | Msa1202170:intron | 35.0% | |
| GTGTTTACTTGCATGTCTTA+GGG | + | chr8_1:55683978-55683997 | Msa1202170:intron | 35.0% | |
| TGTTTACTTGCATGTCTTAG+GGG | + | chr8_1:55683979-55683998 | Msa1202170:intron | 35.0% | |
| ATTGTTAGTGCAATACAGAG+AGG | - | chr8_1:55684008-55684027 | None:intergenic | 35.0% | |
| GATCGCTCACATTAATTCTT+GGG | - | chr8_1:55684149-55684168 | None:intergenic | 35.0% | |
| ! | TAAACGACTTGGAATAAGCA+AGG | + | chr8_1:55684173-55684192 | Msa1202170:CDS | 35.0% |
| AAGAAGAAATTCAAGCAGCT+AGG | + | chr8_1:55684205-55684224 | Msa1202170:CDS | 35.0% | |
| TTCCTGATTCAGAAATATGC+AGG | + | chr8_1:55684231-55684250 | Msa1202170:CDS | 35.0% | |
| TCCTGATTCAGAAATATGCA+GGG | + | chr8_1:55684232-55684251 | Msa1202170:CDS | 35.0% | |
| GACTCAATTGAATCTACACT+TGG | - | chr8_1:55684264-55684283 | None:intergenic | 35.0% | |
| ! | TCACTGGCATTTTTGTTACT+TGG | + | chr8_1:55684438-55684457 | Msa1202170:CDS | 35.0% |
| AGGATAAGAGCTTTGCTTTA+TGG | + | chr8_1:55684561-55684580 | Msa1202170:CDS | 35.0% | |
| GGATAAGAGCTTTGCTTTAT+GGG | + | chr8_1:55684562-55684581 | Msa1202170:CDS | 35.0% | |
| AGCTGAGAGAAAAACCATAA+AGG | - | chr8_1:55685090-55685109 | None:intergenic | 35.0% | |
| GCTTATTTATATCCGTGCTT+TGG | + | chr8_1:55685121-55685140 | Msa1202170:intron | 35.0% | |
| !! | TTGGAGCATTTATCTTTTCG+TGG | + | chr8_1:55685151-55685170 | Msa1202170:CDS | 35.0% |
| ! | ATTTATCTTTTCGTGGCTGT+TGG | + | chr8_1:55685158-55685177 | Msa1202170:CDS | 35.0% |
| ! | TTTATCTTTTCGTGGCTGTT+GGG | + | chr8_1:55685159-55685178 | Msa1202170:CDS | 35.0% |
| AATTACTGACACCATCAAGA+AGG | - | chr8_1:55685187-55685206 | None:intergenic | 35.0% | |
| CATCGACCTATCTTATATGA+AGG | + | chr8_1:55685286-55685305 | Msa1202170:CDS | 35.0% | |
| !!! | GTTATGCCGTTTTGTTGAAT+CGG | + | chr8_1:55685388-55685407 | Msa1202170:three_prime_UTR | 35.0% |
| !!! | TTATGCCGTTTTGTTGAATC+GGG | + | chr8_1:55685389-55685408 | Msa1202170:three_prime_UTR | 35.0% |
| CAAATCCCGATTCAACAAAA+CGG | - | chr8_1:55685397-55685416 | None:intergenic | 35.0% | |
| !! | TGGGATTTTAGAGGCATATA+TGG | + | chr8_1:55685458-55685477 | Msa1202170:three_prime_UTR | 35.0% |
| GCTTCCAAATTTACGTACAT+TGG | + | chr8_1:55685487-55685506 | Msa1202170:three_prime_UTR | 35.0% | |
| ATAGGCAACAAGAATAGCTT+TGG | - | chr8_1:55685541-55685560 | None:intergenic | 35.0% | |
| !!! | CCCTTTTTTTCTAACGCCAA+AGG | + | chr8_1:55681566-55681585 | Msa1202170:five_prime_UTR | 40.0% |
| GACAGAATCGATGCAATTTG+AGG | - | chr8_1:55681785-55681804 | None:intergenic | 40.0% | |
| !! | CATCGATTCTGTCGTTTATG+TGG | + | chr8_1:55681792-55681811 | Msa1202170:intron | 40.0% |
| GAGTTGAACACACTAGGATA+TGG | + | chr8_1:55681896-55681915 | Msa1202170:intron | 40.0% | |
| !! | TCTTCGGTGTCAATTTAGGT+TGG | - | chr8_1:55682144-55682163 | None:intergenic | 40.0% |
| ! | GTCTCTGGTTCGATTATCTT+CGG | - | chr8_1:55682160-55682179 | None:intergenic | 40.0% |
| TAATCGAACCAGAGACTTTG+AGG | + | chr8_1:55682164-55682183 | Msa1202170:intron | 40.0% | |
| GAGAACTGATGAACAACATC+AGG | - | chr8_1:55682352-55682371 | None:intergenic | 40.0% | |
| ! | ATGATTGTATCTGGGTTGAG+TGG | + | chr8_1:55682469-55682488 | Msa1202170:CDS | 40.0% |
| AAAATGACATGACCCGAACA+CGG | - | chr8_1:55682543-55682562 | None:intergenic | 40.0% | |
| !! | TCAATTGGTCAGAAGTGCTA+TGG | + | chr8_1:55682763-55682782 | Msa1202170:CDS | 40.0% |
| !! | CAATTGGTCAGAAGTGCTAT+GGG | + | chr8_1:55682764-55682783 | Msa1202170:CDS | 40.0% |
| !! | ATGGATGTTTGGTTCTCTTG+TGG | + | chr8_1:55682973-55682992 | Msa1202170:intron | 40.0% |
| !! | TCTTGCTCATTTGGTTTGCT+AGG | + | chr8_1:55683023-55683042 | Msa1202170:intron | 40.0% |
| ! | GTTAGGATTTGGTTAGTGGT+TGG | + | chr8_1:55683198-55683217 | Msa1202170:intron | 40.0% |
| TAGACTTCCTGTGCACAATA+AGG | - | chr8_1:55683262-55683281 | None:intergenic | 40.0% | |
| GACTTGTAATGCATCTCTTG+GGG | - | chr8_1:55683438-55683457 | None:intergenic | 40.0% | |
| GGACTTGTAATGCATCTCTT+GGG | - | chr8_1:55683439-55683458 | None:intergenic | 40.0% | |
| CTAAACCAGAAGGAGTTCAA+AGG | + | chr8_1:55683473-55683492 | Msa1202170:intron | 40.0% | |
| ! | TTTTCCCTTTGAACTCCTTC+TGG | - | chr8_1:55683481-55683500 | None:intergenic | 40.0% |
| ! | TTTTTCTTGACATGTGGGGT+GGG | + | chr8_1:55683526-55683545 | Msa1202170:intron | 40.0% |
| AAGAAGGGAAACAGTCATTG+TGG | - | chr8_1:55683618-55683637 | None:intergenic | 40.0% | |
| TTCAACTAAACCAGAGGGTT+GGG | - | chr8_1:55683947-55683966 | None:intergenic | 40.0% | |
| TTTCAACTAAACCAGAGGGT+TGG | - | chr8_1:55683948-55683967 | None:intergenic | 40.0% | |
| AACAGCTGCATTTGTAGCAA+AGG | - | chr8_1:55684124-55684143 | None:intergenic | 40.0% | |
| GGATCGCTCACATTAATTCT+TGG | - | chr8_1:55684150-55684169 | None:intergenic | 40.0% | |
| GATATTGCAACCTGAAGTGT+TGG | - | chr8_1:55684498-55684517 | None:intergenic | 40.0% | |
| GTCTAGCAGACAATATCATC+AGG | - | chr8_1:55684644-55684663 | None:intergenic | 40.0% | |
| ! | GGTTTTTCTCTCAGCTTCTT+AGG | + | chr8_1:55685094-55685113 | Msa1202170:intron | 40.0% |
| TCCTCCCATTCCTATAATCA+AGG | + | chr8_1:55685206-55685225 | Msa1202170:CDS | 40.0% | |
| CCTCCCATTCCTATAATCAA+GGG | + | chr8_1:55685207-55685226 | Msa1202170:CDS | 40.0% | |
| GGTCCCTTGATTATAGGAAT+GGG | - | chr8_1:55685213-55685232 | None:intergenic | 40.0% | |
| TGGTCCCTTGATTATAGGAA+TGG | - | chr8_1:55685214-55685233 | None:intergenic | 40.0% | |
| TTCCTATAATCAAGGGACCA+AGG | + | chr8_1:55685214-55685233 | Msa1202170:CDS | 40.0% | |
| TCCTATAATCAAGGGACCAA+GGG | + | chr8_1:55685215-55685234 | Msa1202170:CDS | 40.0% | |
| TGAGAATGCACAGGGAAGAA+GGG | - | chr8_1:55681501-55681520 | None:intergenic | 45.0% | |
| TTGAGAATGCACAGGGAAGA+AGG | - | chr8_1:55681502-55681521 | None:intergenic | 45.0% | |
| ! | GCAGTAGTGGAGAATGAAAG+TGG | - | chr8_1:55681679-55681698 | None:intergenic | 45.0% |
| ! | AGGAGAGACAGCGTTAGTTT+AGG | + | chr8_1:55682274-55682293 | Msa1202170:intron | 45.0% |
| ! | GGAGAGACAGCGTTAGTTTA+GGG | + | chr8_1:55682275-55682294 | Msa1202170:intron | 45.0% |
| !!! | TCGGGTCATGTCATTTTCTG+TGG | + | chr8_1:55682546-55682565 | Msa1202170:CDS | 45.0% |
| !!! | GTCATGTCATTTTCTGTGGC+TGG | + | chr8_1:55682550-55682569 | Msa1202170:CDS | 45.0% |
| AGTGCTATGGGTGCTTCATT+TGG | + | chr8_1:55682776-55682795 | Msa1202170:CDS | 45.0% | |
| ! | TTCCTGTGGTCTTGCTCATT+TGG | + | chr8_1:55683014-55683033 | Msa1202170:intron | 45.0% |
| AACCAAATGAGCAAGACCAC+AGG | - | chr8_1:55683019-55683038 | None:intergenic | 45.0% | |
| CGGACTTGTAATGCATCTCT+TGG | - | chr8_1:55683440-55683459 | None:intergenic | 45.0% | |
| AGATGCATTACAAGTCCGAG+AGG | + | chr8_1:55683442-55683461 | Msa1202170:intron | 45.0% | |
| GATGCATTACAAGTCCGAGA+GGG | + | chr8_1:55683443-55683462 | Msa1202170:intron | 45.0% | |
| ! | CTTTTTCTTGACATGTGGGG+TGG | + | chr8_1:55683525-55683544 | Msa1202170:intron | 45.0% |
| ! | TTTTCTTGACATGTGGGGTG+GGG | + | chr8_1:55683527-55683546 | Msa1202170:intron | 45.0% |
| TATGGGTGACAGACAGATGT+TGG | + | chr8_1:55683580-55683599 | Msa1202170:intron | 45.0% | |
| AGCGATCCGTATAAACGACT+TGG | + | chr8_1:55684162-55684181 | Msa1202170:CDS | 45.0% | |
| ! | GCCCTGCATATTTCTGAATC+AGG | - | chr8_1:55684236-55684255 | None:intergenic | 45.0% |
| ! | CAATCAATCCCGATTCGTTC+AGG | + | chr8_1:55684365-55684384 | Msa1202170:CDS | 45.0% |
| TTCCTCGGTTGGAAAGAGAA+CGG | - | chr8_1:55684472-55684491 | None:intergenic | 45.0% | |
| TTCTCTTTCCAACCGAGGAA+GGG | + | chr8_1:55684472-55684491 | Msa1202170:CDS | 45.0% | |
| TATATGATCGGCTGAAGAGC+AGG | + | chr8_1:55684541-55684560 | Msa1202170:CDS | 45.0% | |
| ! | TTATATCCGTGCTTTGGTGC+AGG | + | chr8_1:55685127-55685146 | Msa1202170:intron | 45.0% |
| ! | TATATCCGTGCTTTGGTGCA+GGG | + | chr8_1:55685128-55685147 | Msa1202170:intron | 45.0% |
| CCCTTGATTATAGGAATGGG+AGG | - | chr8_1:55685210-55685229 | None:intergenic | 45.0% | |
| GTATCTCAATCTGAATGCCG+CGG | + | chr8_1:55685319-55685338 | Msa1202170:three_prime_UTR | 45.0% | |
| !!! | TAAAAATGATTTTTTTTTAA+TGG | + | chr8_1:55684920-55684939 | Msa1202170:intron | 5.0% |
| !! | GGGTTTTGGTGTATGCCCTT+TGG | + | chr8_1:55681464-55681483 | Msa1202170:five_prime_UTR | 50.0% |
| !! | AGGGGGAAAGTGTTGCTGTT+GGG | - | chr8_1:55681550-55681569 | None:intergenic | 50.0% |
| !! | AAGGGGGAAAGTGTTGCTGT+TGG | - | chr8_1:55681551-55681570 | None:intergenic | 50.0% |
| ! | TCGAACCAGAGACTTTGAGG+AGG | + | chr8_1:55682167-55682186 | Msa1202170:intron | 50.0% |
| !! | GTGGAATTGGCTTGGGACTT+GGG | - | chr8_1:55682201-55682220 | None:intergenic | 50.0% |
| !! | AGTGGAATTGGCTTGGGACT+TGG | - | chr8_1:55682202-55682221 | None:intergenic | 50.0% |
| AGTCCCAAGCCAATTCCACT+AGG | + | chr8_1:55682202-55682221 | Msa1202170:intron | 50.0% | |
| GTCCCAAGCCAATTCCACTA+GGG | + | chr8_1:55682203-55682222 | Msa1202170:intron | 50.0% | |
| ! | CACCCTAGTGGAATTGGCTT+GGG | - | chr8_1:55682208-55682227 | None:intergenic | 50.0% |
| CAAGCCAATTCCACTAGGGT+GGG | + | chr8_1:55682207-55682226 | Msa1202170:intron | 50.0% | |
| CTAACCCACCCTAGTGGAAT+TGG | - | chr8_1:55682214-55682233 | None:intergenic | 50.0% | |
| ! | CAATTCCACTAGGGTGGGTT+AGG | + | chr8_1:55682212-55682231 | Msa1202170:intron | 50.0% |
| AGGCAACGAGGAGGTAATTG+GGG | - | chr8_1:55682511-55682530 | None:intergenic | 50.0% | |
| GAGGCAACGAGGAGGTAATT+GGG | - | chr8_1:55682512-55682531 | None:intergenic | 50.0% | |
| TGGGCATACCTTTCCACACT+GGG | - | chr8_1:55682601-55682620 | None:intergenic | 50.0% | |
| TTGGGCATACCTTTCCACAC+TGG | - | chr8_1:55682602-55682621 | None:intergenic | 50.0% | |
| CATTACAAGTCCGAGAGGGT+AGG | + | chr8_1:55683447-55683466 | Msa1202170:intron | 50.0% | |
| TTTCTTGACATGTGGGGTGG+GGG | + | chr8_1:55683528-55683547 | Msa1202170:intron | 50.0% | |
| TTTCCCTTCTTCCCTACCCT+TGG | + | chr8_1:55683627-55683646 | Msa1202170:intron | 50.0% | |
| TTCCCTTCTTCCCTACCCTT+GGG | + | chr8_1:55683628-55683647 | Msa1202170:intron | 50.0% | |
| TGACTTTCTTCCCCACCCTT+AGG | + | chr8_1:55683687-55683706 | Msa1202170:intron | 50.0% | |
| ACAAGAGGGTCTCTGCCTAA+GGG | - | chr8_1:55683705-55683724 | None:intergenic | 50.0% | |
| AACAAGAGGGTCTCTGCCTA+AGG | - | chr8_1:55683706-55683725 | None:intergenic | 50.0% | |
| TCTGACAGCCTGAACGAATC+GGG | - | chr8_1:55684376-55684395 | None:intergenic | 50.0% | |
| CTCTGACAGCCTGAACGAAT+CGG | - | chr8_1:55684377-55684396 | None:intergenic | 50.0% | |
| GTTCTCTTTCCAACCGAGGA+AGG | + | chr8_1:55684471-55684490 | Msa1202170:CDS | 50.0% | |
| ! | GAACAAGGGCCCGTTTGTTT+TGG | - | chr8_1:55685029-55685048 | None:intergenic | 50.0% |
| GCTGTTGGGAACCTTCTTGA+TGG | + | chr8_1:55685173-55685192 | Msa1202170:CDS | 50.0% | |
| GCCCTTGGTCCCTTGATTAT+AGG | - | chr8_1:55685219-55685238 | None:intergenic | 50.0% | |
| GTGATCACCTCAAATGCCCT+TGG | - | chr8_1:55685234-55685253 | None:intergenic | 50.0% | |
| TCTTCTGCTAAAATCCGCCG+CGG | - | chr8_1:55685339-55685358 | None:intergenic | 50.0% | |
| GTGCTCCTCCTCAAAGTCTC+TGG | - | chr8_1:55682175-55682194 | None:intergenic | 55.0% | |
| CCACCCTAGTGGAATTGGCT+TGG | - | chr8_1:55682209-55682228 | None:intergenic | 55.0% | |
| CCAAGCCAATTCCACTAGGG+TGG | + | chr8_1:55682206-55682225 | Msa1202170:intron | 55.0% | |
| CTAGTCCTAACCCACCCTAG+TGG | - | chr8_1:55682220-55682239 | None:intergenic | 55.0% | |
| GGCAACGAGGAGGTAATTGG+GGG | - | chr8_1:55682510-55682529 | None:intergenic | 55.0% | |
| CGAGGCAACGAGGAGGTAAT+TGG | - | chr8_1:55682513-55682532 | None:intergenic | 55.0% | |
| AAGGACAGCGTTTCCCAGTG+TGG | + | chr8_1:55682585-55682604 | Msa1202170:CDS | 55.0% | |
| CAGCGTTTCCCAGTGTGGAA+AGG | + | chr8_1:55682590-55682609 | Msa1202170:CDS | 55.0% | |
| TACAAGTCCGAGAGGGTAGG+TGG | + | chr8_1:55683450-55683469 | Msa1202170:intron | 55.0% | |
| GGTTTAGCCACCTACCCTCT+CGG | - | chr8_1:55683460-55683479 | None:intergenic | 55.0% | |
| GGGTAGGTGGCTAAACCAGA+AGG | + | chr8_1:55683463-55683482 | Msa1202170:intron | 55.0% | |
| TTCTTGACATGTGGGGTGGG+GGG | + | chr8_1:55683529-55683548 | Msa1202170:intron | 55.0% | |
| TGCCCAAGGGTAGGGAAGAA+GGG | - | chr8_1:55683633-55683652 | None:intergenic | 55.0% | |
| AGGGTTGGGAGTGGCACAAA+TGG | - | chr8_1:55683933-55683952 | None:intergenic | 55.0% | |
| CTAAACCAGAGGGTTGGGAG+TGG | - | chr8_1:55683942-55683961 | None:intergenic | 55.0% | |
| CGATTCGTTCAGGCTGTCAG+AGG | + | chr8_1:55684375-55684394 | Msa1202170:CDS | 55.0% | |
| GACCGTTCTCTTTCCAACCG+AGG | + | chr8_1:55684467-55684486 | Msa1202170:CDS | 55.0% | |
| !! | CTGAAGTGTTGGCCCTTCCT+CGG | - | chr8_1:55684487-55684506 | None:intergenic | 55.0% |
| TCCAACCCTGCACCAAAGCA+CGG | - | chr8_1:55685136-55685155 | None:intergenic | 55.0% | |
| !! | CAAGGGACCAAGGGCATTTG+AGG | + | chr8_1:55685224-55685243 | Msa1202170:CDS | 55.0% |
| TCTCAATCTGAATGCCGCGG+CGG | + | chr8_1:55685322-55685341 | Msa1202170:three_prime_UTR | 55.0% | |
| CGTGATTCGAGGCAACGAGG+AGG | - | chr8_1:55682520-55682539 | None:intergenic | 60.0% | |
| GCCTCGAATCACGCCGTGTT+CGG | + | chr8_1:55682527-55682546 | Msa1202170:CDS | 60.0% | |
| CCTCGAATCACGCCGTGTTC+GGG | + | chr8_1:55682528-55682547 | Msa1202170:CDS | 60.0% | |
| CTGCCCAAGGGTAGGGAAGA+AGG | - | chr8_1:55683634-55683653 | None:intergenic | 60.0% | |
| AGGGTCTCTGCCCAAGGGTA+GGG | - | chr8_1:55683641-55683660 | None:intergenic | 60.0% | |
| ACGAGAGGGTCTCTGCCCAA+GGG | - | chr8_1:55683646-55683665 | None:intergenic | 60.0% | |
| AGGGTCTCTGCCTAAGGGTG+GGG | - | chr8_1:55683700-55683719 | None:intergenic | 60.0% | |
| GAGGGTCTCTGCCTAAGGGT+GGG | - | chr8_1:55683701-55683720 | None:intergenic | 60.0% | |
| AGAGGGTCTCTGCCTAAGGG+TGG | - | chr8_1:55683702-55683721 | None:intergenic | 60.0% | |
| ! | TTGTGCCACTCCCAACCCTC+TGG | + | chr8_1:55683934-55683953 | Msa1202170:intron | 60.0% |
| !! | AGTGTTGGCCCTTCCTCGGT+TGG | - | chr8_1:55684483-55684502 | None:intergenic | 60.0% |
| CGAGGAAGGGCCAACACTTC+AGG | + | chr8_1:55684485-55684504 | Msa1202170:CDS | 60.0% | |
| ! | TCCGTGCTTTGGTGCAGGGT+TGG | + | chr8_1:55685132-55685151 | Msa1202170:intron | 60.0% |
| CGGCGTGATTCGAGGCAACG+AGG | - | chr8_1:55682523-55682542 | None:intergenic | 65.0% | |
| CCCGAACACGGCGTGATTCG+AGG | - | chr8_1:55682531-55682550 | None:intergenic | 65.0% | |
| GAGGGTCTCTGCCCAAGGGT+AGG | - | chr8_1:55683642-55683661 | None:intergenic | 65.0% | |
| CACGAGAGGGTCTCTGCCCA+AGG | - | chr8_1:55683647-55683666 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 55681462 | 55685673 | 55681462 | ID=Msa1202170;Name=Msa1202170 |
| chr8_1 | mRNA | 55681462 | 55685673 | 55681462 | ID=Msa1202170-mRNA-1;Parent=Msa1202170;Name=Msa1202170-mRNA-1;_AED=0.02;_eAED=0.02;_QI=200|1|1|1|0.6|0.33|6|346|282 |
| chr8_1 | exon | 55681462 | 55681587 | 55681462 | ID=Msa1202170-mRNA-1:exon:18004;Parent=Msa1202170-mRNA-1 |
| chr8_1 | exon | 55682395 | 55682611 | 55682395 | ID=Msa1202170-mRNA-1:exon:18005;Parent=Msa1202170-mRNA-1 |
| chr8_1 | exon | 55682718 | 55682821 | 55682718 | ID=Msa1202170-mRNA-1:exon:18006;Parent=Msa1202170-mRNA-1 |
| chr8_1 | exon | 55684139 | 55684583 | 55684139 | ID=Msa1202170-mRNA-1:exon:18007;Parent=Msa1202170-mRNA-1 |
| chr8_1 | exon | 55685149 | 55685622 | 55685149 | ID=Msa1202170-mRNA-1:exon:18008;Parent=Msa1202170-mRNA-1 |
| chr8_1 | exon | 55685645 | 55685673 | 55685645 | ID=Msa1202170-mRNA-1:exon:18009;Parent=Msa1202170-mRNA-1 |
| chr8_1 | five_prime_UTR | 55681462 | 55681587 | 55681462 | ID=Msa1202170-mRNA-1:five_prime_utr;Parent=Msa1202170-mRNA-1 |
| chr8_1 | five_prime_UTR | 55682395 | 55682468 | 55682395 | ID=Msa1202170-mRNA-1:five_prime_utr;Parent=Msa1202170-mRNA-1 |
| chr8_1 | CDS | 55682469 | 55682611 | 55682469 | ID=Msa1202170-mRNA-1:cds;Parent=Msa1202170-mRNA-1 |
| chr8_1 | CDS | 55682718 | 55682821 | 55682718 | ID=Msa1202170-mRNA-1:cds;Parent=Msa1202170-mRNA-1 |
| chr8_1 | CDS | 55684139 | 55684583 | 55684139 | ID=Msa1202170-mRNA-1:cds;Parent=Msa1202170-mRNA-1 |
| chr8_1 | CDS | 55685149 | 55685305 | 55685149 | ID=Msa1202170-mRNA-1:cds;Parent=Msa1202170-mRNA-1 |
| chr8_1 | three_prime_UTR | 55685306 | 55685622 | 55685306 | ID=Msa1202170-mRNA-1:three_prime_utr;Parent=Msa1202170-mRNA-1 |
| chr8_1 | three_prime_UTR | 55685645 | 55685673 | 55685645 | ID=Msa1202170-mRNA-1:three_prime_utr;Parent=Msa1202170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
