AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1144730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1144730 MtrunA17_Chr3g0077171 96.096 333 11 1 1 331 1 333 0.0 658
Msa1144730 MtrunA17_Chr4g0065821 27.805 205 129 6 132 330 42 233 1.89e-18 83.2
Msa1144730 MtrunA17_Chr2g0287281 27.358 212 139 6 126 330 40 243 7.41e-18 81.6
Msa1144730 MtrunA17_Chr4g0065781 29.358 218 143 6 116 330 28 237 5.11e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1144730 AT1G35420.3 60.256 234 89 1 98 331 45 274 9.10e-111 323
Msa1144730 AT1G35420.1 60.256 234 89 1 98 331 81 310 1.67e-110 324
Msa1144730 AT1G35420.2 60.256 234 89 1 98 331 86 315 2.13e-110 324
Msa1144730 AT3G23600.1 25.000 200 136 5 132 325 42 233 1.55e-13 69.7
Msa1144730 AT3G23570.3 23.944 213 142 6 127 330 37 238 1.59e-12 66.6
Msa1144730 AT3G23570.1 23.944 213 142 6 127 330 37 238 1.59e-12 66.6
Msa1144730 AT3G23570.2 23.944 213 142 6 127 330 37 238 1.59e-12 66.6
Msa1144730 AT3G23600.2 24.500 200 134 4 132 325 42 230 1.76e-12 66.6
Msa1144730 AT2G32520.4 26.022 269 155 13 84 330 30 276 1.82e-12 67.0
Msa1144730 AT2G32520.2 26.022 269 155 13 84 330 70 316 3.79e-12 66.6
Msa1144730 AT2G32520.1 25.806 248 146 12 105 330 7 238 6.42e-12 65.1
Msa1144730 AT2G32520.3 26.638 229 133 11 124 330 9 224 1.28e-11 63.9

Find 72 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTTCTTTCTGATGTTTA+TGG 0.109167 7_4:-21086139 Msa1144730:CDS
TCCAGAAAACTTGGCATAAT+TGG 0.171939 7_4:-21085795 Msa1144730:CDS
TGCTTCTTTCTGATGTTTAT+GGG 0.222443 7_4:-21086138 Msa1144730:CDS
ATCTATCCTTGTACCATAAA+AGG 0.252752 7_4:+21085698 None:intergenic
CAAAGCAAGCATCTTGGTCT+TGG 0.330779 7_4:+21085733 None:intergenic
TTCTGATGTTTATGGGTTTG+AGG 0.335907 7_4:-21086131 Msa1144730:CDS
TGGAGAGGAGCTTTATTTAG+AGG 0.337897 7_4:-21086227 Msa1144730:CDS
CATTGTTCAAACTGAGTGTT+TGG 0.394017 7_4:+21085906 None:intergenic
CAAGACCAAGATGCTTGCTT+TGG 0.399499 7_4:-21085732 Msa1144730:CDS
TGGAGGAGGCAAAGTGTTAG+AGG 0.399979 7_4:-21085763 Msa1144730:CDS
CAGTTTGAACAATGGATTGC+TGG 0.409924 7_4:-21085897 Msa1144730:CDS
AAAGAGAGGTTGGAAGGAAA+TGG 0.413388 7_4:+21088144 None:intergenic
TTGTCTTCTTCCACAGATCC+AGG 0.424413 7_4:+21085516 None:intergenic
AGAGCAACTGTAAGCATTTG+TGG 0.439788 7_4:-21088227 Msa1144730:CDS
AAACATCAGAAAGAAGCAAT+AGG 0.452098 7_4:+21086143 None:intergenic
CAAGATGCTTGCTTTGGCAC+TGG 0.457644 7_4:-21085726 Msa1144730:CDS
TTTGGCTGGTCCTTTGTCCA+TGG 0.461066 7_4:+21085924 None:intergenic
ATTCAGACTACAATTGATAG+TGG 0.467846 7_4:-21085588 Msa1144730:CDS
GGATTTCCGCGAAATAAGTC+TGG 0.473584 7_4:+21085945 None:intergenic
CATGGATTTGCCCACCGACC+TGG 0.475732 7_4:-21085534 Msa1144730:CDS
AGGAAGCAGTAAAGTGAAGA+TGG 0.475926 7_4:-21088264 Msa1144730:CDS
CAGGAGGAGAAAAGAGAGGT+TGG 0.480980 7_4:+21088134 None:intergenic
AGAGGCTTTGCAATGCTTGA+TGG 0.482040 7_4:+21088185 None:intergenic
AAAGCAAGCATCTTGGTCTT+GGG 0.482070 7_4:+21085734 None:intergenic
ATCATGTAGTTTACTGAATG+TGG 0.483578 7_4:-21086287 Msa1144730:CDS
GTTCAAACTGAGTGTTTGGC+TGG 0.486742 7_4:+21085910 None:intergenic
AGGAAATGGCAGTGAGTAGG+AGG 0.496922 7_4:+21088158 None:intergenic
AGGAGAAAAGAGAGGTTGGA+AGG 0.497121 7_4:+21088138 None:intergenic
CCTATGTAATTATGAGAGAC+TGG 0.497192 7_4:-21085479 Msa1144730:CDS
GCAAATCCATGACCTCTACC+TGG 0.498184 7_4:+21085546 None:intergenic
AGACTGGATACATGAACATT+TGG 0.500231 7_4:-21085463 Msa1144730:CDS
ACTTATTTCGCGGAAATCCA+TGG 0.511640 7_4:-21085941 Msa1144730:CDS
GAAGGAGTTTCCAGAAAACT+TGG 0.511807 7_4:-21085804 Msa1144730:CDS
GGAAGCAGTAAAGTGAAGAT+GGG 0.524339 7_4:-21088263 Msa1144730:CDS
GAGGAGCTTTATTTAGAGGA+TGG 0.526108 7_4:-21086223 Msa1144730:CDS
GGAAGGAAATGGCAGTGAGT+AGG 0.529323 7_4:+21088155 None:intergenic
CTACTTCCAGACTTATTTCG+CGG 0.530504 7_4:-21085951 Msa1144730:CDS
CCAGTCTCTCATAATTACAT+AGG 0.533492 7_4:+21085479 None:intergenic
TACCGCGTGGACAGAATGGC+TGG 0.535143 7_4:-21085844 Msa1144730:CDS
ATATTCCCAGGTAGAGGTCA+TGG 0.536948 7_4:-21085552 Msa1144730:CDS
CTTCCACAGATCCAGGTCGG+TGG 0.541392 7_4:+21085523 None:intergenic
GCATATCGGGTAGCTTGCAA+TGG 0.544452 7_4:-21086088 Msa1144730:CDS
CCGATATGCAAAATCTCTTG+TGG 0.552409 7_4:+21086102 None:intergenic
TCCCCTAAAATAAACAAGAC+GGG 0.553707 7_4:+21085648 None:intergenic
CAGTGCCAAAGCAAGCATCT+TGG 0.554303 7_4:+21085727 None:intergenic
ACATTACCGCGTGGACAGAA+TGG 0.563574 7_4:-21085848 Msa1144730:CDS
TGCCCACCGACCTGGATCTG+TGG 0.579207 7_4:-21085526 Msa1144730:CDS
TTCCACAGATCCAGGTCGGT+GGG 0.580911 7_4:+21085524 None:intergenic
ACCTGGGAATATCACTACTT+CGG 0.584926 7_4:+21085563 None:intergenic
GTCCCCTAAAATAAACAAGA+CGG 0.586963 7_4:+21085647 None:intergenic
GTAGTGATATTCCCAGGTAG+AGG 0.589122 7_4:-21085558 Msa1144730:CDS
TCCGAAGTAGTGATATTCCC+AGG 0.591003 7_4:-21085564 Msa1144730:CDS
TTTCACTTACAGCGCAAAGT+GGG 0.603080 7_4:+21085619 None:intergenic
GTAGCACTAGCACTAGCACT+AGG 0.604565 7_4:-21088284 Msa1144730:CDS
TTAATTATGATTAATGAGTG+AGG 0.606747 7_4:-21088306 None:intergenic
CTTCTTCCACAGATCCAGGT+CGG 0.616133 7_4:+21085520 None:intergenic
ATTTCACTTACAGCGCAAAG+TGG 0.618765 7_4:+21085618 None:intergenic
AAATCAGTTCAAGATACCGC+AGG 0.618922 7_4:-21086319 Msa1144730:CDS
CAAATCCATGACCTCTACCT+GGG 0.634499 7_4:+21085547 None:intergenic
GCAGATGAATTGATGACTGA+AGG 0.634603 7_4:-21085822 Msa1144730:CDS
CAGTGAGTAGGAGGATAGAG+AGG 0.637427 7_4:+21088167 None:intergenic
TGGATCTGTGGAAGAAGACA+AGG 0.642473 7_4:-21085514 Msa1144730:CDS
CATACAGGAGGAGAAAAGAG+AGG 0.643705 7_4:+21088130 None:intergenic
CAAACACTCAGTTTGAACAA+TGG 0.646343 7_4:-21085905 Msa1144730:CDS
ATATGCAAAATCTCTTGTGG+AGG 0.652296 7_4:+21086105 None:intergenic
TCGCGGAAATCCATGGACAA+AGG 0.657862 7_4:-21085934 Msa1144730:CDS
GAAGCAGTAAAGTGAAGATG+GGG 0.669526 7_4:-21088262 Msa1144730:CDS
ATGTGAATTAGTCAGTGGAG+AGG 0.695974 7_4:-21086242 Msa1144730:CDS
TTGCTGGACATAACCCTGAG+AGG 0.698077 7_4:-21085881 Msa1144730:CDS
GATGCATGTGAATTAGTCAG+TGG 0.732474 7_4:-21086247 Msa1144730:CDS
TGCCAGCCATTCTGTCCACG+CGG 0.754261 7_4:+21085842 None:intergenic
TTGCAAAAGACATTACCGCG+TGG 0.790610 7_4:-21085857 Msa1144730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAATAATTAGCTATT+AGG + chr7_4:21087340-21087359 None:intergenic 10.0%
!! ATACAACTAAAAAAATCATT+TGG - chr7_4:21085708-21085727 Msa1144730:CDS 15.0%
!!! TGATATATTTTCAACAAAAA+TGG - chr7_4:21085793-21085812 Msa1144730:CDS 15.0%
!! GAGAAAATGATTAATTATAT+TGG - chr7_4:21085860-21085879 Msa1144730:CDS 15.0%
!! AAACTAAATTTGATCTTAAT+TGG + chr7_4:21087266-21087285 None:intergenic 15.0%
!!! ACTTTTATTTACTTAACCAA+TGG + chr7_4:21085819-21085838 None:intergenic 20.0%
!!! TTCTAAAAACCTCTAATAAT+GGG + chr7_4:21085988-21086007 None:intergenic 20.0%
!!! ATTCTAAAAACCTCTAATAA+TGG + chr7_4:21085989-21086008 None:intergenic 20.0%
!! ACAAAAGAAAAGTAGAATTT+AGG + chr7_4:21086092-21086111 None:intergenic 20.0%
!!! TACATTTGATGACTAAAAAA+AGG + chr7_4:21086645-21086664 None:intergenic 20.0%
!!! AATATTGCTATTATCTTCTA+AGG - chr7_4:21086768-21086787 Msa1144730:intron 20.0%
!!! ATATTGCTATTATCTTCTAA+GGG - chr7_4:21086769-21086788 Msa1144730:intron 20.0%
!! ATTATGATTGTTAAGTATCT+AGG - chr7_4:21086944-21086963 Msa1144730:intron 20.0%
!! GTAAAAAATAACAATGGAAT+TGG - chr7_4:21087585-21087604 Msa1144730:intron 20.0%
!! TAAATAAATATGCAAAAGAG+AGG + chr7_4:21087754-21087773 None:intergenic 20.0%
! TCTCTGTAAAGTATATATAC+TGG + chr7_4:21085844-21085863 None:intergenic 25.0%
! TCTAAAAACCTCTAATAATG+GGG + chr7_4:21085987-21086006 None:intergenic 25.0%
!!! ATACCATGTTTTTACTTACT+AGG - chr7_4:21086290-21086309 Msa1144730:CDS 25.0%
!!! TACCATGTTTTTACTTACTA+GGG - chr7_4:21086291-21086310 Msa1144730:CDS 25.0%
! GAAGATAATAGCAATATTCT+TGG + chr7_4:21086766-21086785 None:intergenic 25.0%
! AATCATAATGTCAACTTTCT+TGG + chr7_4:21086933-21086952 None:intergenic 25.0%
! CATTTCTATGTGACATATAT+TGG - chr7_4:21087076-21087095 Msa1144730:intron 25.0%
!! TCAATCGATTTAAACATCTA+GGG + chr7_4:21087104-21087123 None:intergenic 25.0%
!! ATCAATCGATTTAAACATCT+AGG + chr7_4:21087105-21087124 None:intergenic 25.0%
! AAGGCAGTAAAAAATAACAA+TGG - chr7_4:21087579-21087598 Msa1144730:intron 25.0%
AAGAAAGAAAGAGAACATAC+AGG + chr7_4:21085639-21085658 None:intergenic 30.0%
GAATGTGAATAGATGATGAA+AGG + chr7_4:21085681-21085700 None:intergenic 30.0%
! TTTTCAACAAAAATGGCCAT+TGG - chr7_4:21085800-21085819 Msa1144730:CDS 30.0%
! GTGATTTTGTGATACACTTT+AGG + chr7_4:21086027-21086046 None:intergenic 30.0%
! TCTTACTTCTTAGTTTGAGT+TGG - chr7_4:21086059-21086078 Msa1144730:intron 30.0%
AGAATCATAGTGAAGCAATT+TGG - chr7_4:21086328-21086347 Msa1144730:CDS 30.0%
GATAATAGTATACACACTCT+CGG - chr7_4:21086354-21086373 Msa1144730:CDS 30.0%
ACATCAATTCTTTAAATCCC+TGG - chr7_4:21086396-21086415 Msa1144730:intron 30.0%
TTGACTCTGAATTTCTTTCA+CGG - chr7_4:21086435-21086454 Msa1144730:intron 30.0%
TGTAAAATCAGCAATGACTT+TGG - chr7_4:21086661-21086680 Msa1144730:intron 30.0%
TAATAGCAATATTCTTGGCT+TGG + chr7_4:21086761-21086780 None:intergenic 30.0%
CTAAACTGATCTTTGTACTA+TGG - chr7_4:21087195-21087214 Msa1144730:intron 30.0%
! TTGATCTTAATTGGTGTCTA+AGG + chr7_4:21087257-21087276 None:intergenic 30.0%
ACTGAAGTTTCTTAGTTACA+TGG - chr7_4:21087310-21087329 Msa1144730:intron 30.0%
ATCATGTAGTTTACTGAATG+TGG - chr7_4:21087464-21087483 Msa1144730:intron 30.0%
! TGTTCATGCTTATCTTTTCA+AGG - chr7_4:21087560-21087579 Msa1144730:intron 30.0%
AAACATCAGAAAGAAGCAAT+AGG + chr7_4:21087611-21087630 None:intergenic 30.0%
TTGCTTCTTTCTGATGTTTA+TGG - chr7_4:21087612-21087631 Msa1144730:intron 30.0%
TGCTTCTTTCTGATGTTTAT+GGG - chr7_4:21087613-21087632 Msa1144730:intron 30.0%
!!! ATAATTGGTTTTTGCTTTGG+AGG - chr7_4:21087971-21087990 Msa1144730:intron 30.0%
ATCTATCCTTGTACCATAAA+AGG + chr7_4:21088056-21088075 None:intergenic 30.0%
!!! TTCCCGTCTTGTTTATTTTA+GGG - chr7_4:21088101-21088120 Msa1144730:intron 30.0%
ATTCAGACTACAATTGATAG+TGG - chr7_4:21088163-21088182 Msa1144730:CDS 30.0%
AAAGAAAGAGAACATACAGG+AGG + chr7_4:21085636-21085655 None:intergenic 35.0%
GTGAATAGATGATGAAAGGA+GGG + chr7_4:21085677-21085696 None:intergenic 35.0%
TGTGAATAGATGATGAAAGG+AGG + chr7_4:21085678-21085697 None:intergenic 35.0%
TGAAAAACACACAACAGAGT+AGG - chr7_4:21085756-21085775 Msa1144730:CDS 35.0%
ACAAGTGTCATATACAGACA+CGG + chr7_4:21085959-21085978 None:intergenic 35.0%
!! CACTTTAGGCTGTTTTATGT+TGG + chr7_4:21086013-21086032 None:intergenic 35.0%
GTTTAGCATATATGACATCG+TGG - chr7_4:21086175-21086194 Msa1144730:CDS 35.0%
! TTGACATTCTGTGTTTTCTG+AGG - chr7_4:21086237-21086256 Msa1144730:CDS 35.0%
AGCCCTAGTAAGTAAAAACA+TGG + chr7_4:21086296-21086315 None:intergenic 35.0%
AAACTCAAAACTGATCACCA+GGG + chr7_4:21086416-21086435 None:intergenic 35.0%
AAAACTCAAAACTGATCACC+AGG + chr7_4:21086417-21086436 None:intergenic 35.0%
CATGTAAATAACCTCTACCT+AGG + chr7_4:21086486-21086505 None:intergenic 35.0%
! AAGCAGTACAAGATTAGCTA+TGG + chr7_4:21086515-21086534 None:intergenic 35.0%
TATTGGAGGATTGTTCTTCA+TGG + chr7_4:21086813-21086832 None:intergenic 35.0%
TGAAGAACAATCCTCCAATA+TGG - chr7_4:21086813-21086832 Msa1144730:intron 35.0%
AACAATCCTCCAATATGGAA+TGG - chr7_4:21086818-21086837 Msa1144730:intron 35.0%
ACAATCCTCCAATATGGAAT+GGG - chr7_4:21086819-21086838 Msa1144730:intron 35.0%
TGATATCTCCCATTCCATAT+TGG + chr7_4:21086830-21086849 None:intergenic 35.0%
! GATATCAACCATGATTTGTC+TGG - chr7_4:21086843-21086862 Msa1144730:intron 35.0%
! TTTCCTGCTGATGATTTTAG+AGG + chr7_4:21086878-21086897 None:intergenic 35.0%
TTCTGTTTGCAGCTTTCTAT+AGG + chr7_4:21086901-21086920 None:intergenic 35.0%
TGTGTTATATGCAAGTGTTC+GGG + chr7_4:21087029-21087048 None:intergenic 35.0%
GTGTGTTATATGCAAGTGTT+CGG + chr7_4:21087030-21087049 None:intergenic 35.0%
CACAAAAGAAAAAACCCCAA+TGG - chr7_4:21087172-21087191 Msa1144730:intron 35.0%
AAAGATCAGTTTAGCCATTG+GGG + chr7_4:21087189-21087208 None:intergenic 35.0%
CAAAGATCAGTTTAGCCATT+GGG + chr7_4:21087190-21087209 None:intergenic 35.0%
ACAAAGATCAGTTTAGCCAT+TGG + chr7_4:21087191-21087210 None:intergenic 35.0%
TACTATGGAGACATGCATTT+AGG - chr7_4:21087210-21087229 Msa1144730:intron 35.0%
ACTATGGAGACATGCATTTA+GGG - chr7_4:21087211-21087230 Msa1144730:intron 35.0%
CTGAAGAATTGCATTCAACA+AGG + chr7_4:21087377-21087396 None:intergenic 35.0%
TTCTGATGTTTATGGGTTTG+AGG - chr7_4:21087620-21087639 Msa1144730:intron 35.0%
ATATGCAAAATCTCTTGTGG+AGG + chr7_4:21087649-21087668 None:intergenic 35.0%
! CCACAAGAGATTTTGCATAT+CGG - chr7_4:21087649-21087668 Msa1144730:intron 35.0%
! CACAAGAGATTTTGCATATC+GGG - chr7_4:21087650-21087669 Msa1144730:intron 35.0%
CATTGTTCAAACTGAGTGTT+TGG + chr7_4:21087848-21087867 None:intergenic 35.0%
CAAACACTCAGTTTGAACAA+TGG - chr7_4:21087846-21087865 Msa1144730:intron 35.0%
TCCAGAAAACTTGGCATAAT+TGG - chr7_4:21087956-21087975 Msa1144730:intron 35.0%
! ACCAATTATGCCAAGTTTTC+TGG + chr7_4:21087960-21087979 None:intergenic 35.0%
!!! GGCATAATTGGTTTTTGCTT+TGG - chr7_4:21087968-21087987 Msa1144730:intron 35.0%
! GAATCTCCTTTTATGGTACA+AGG - chr7_4:21088047-21088066 Msa1144730:intron 35.0%
!!! GTTCCCGTCTTGTTTATTTT+AGG - chr7_4:21088100-21088119 Msa1144730:intron 35.0%
!!! TCCCGTCTTGTTTATTTTAG+GGG - chr7_4:21088102-21088121 Msa1144730:intron 35.0%
TCCCCTAAAATAAACAAGAC+GGG + chr7_4:21088106-21088125 None:intergenic 35.0%
GTCCCCTAAAATAAACAAGA+CGG + chr7_4:21088107-21088126 None:intergenic 35.0%
CCAGTCTCTCATAATTACAT+AGG + chr7_4:21088275-21088294 None:intergenic 35.0%
CCTATGTAATTATGAGAGAC+TGG - chr7_4:21088272-21088291 Msa1144730:CDS 35.0%
AGACTGGATACATGAACATT+TGG - chr7_4:21088288-21088307 Msa1144730:CDS 35.0%
AGGAAGCAGTAAAGTGAAGA+TGG - chr7_4:21085487-21085506 Msa1144730:CDS 40.0%
GGAAGCAGTAAAGTGAAGAT+GGG - chr7_4:21085488-21085507 Msa1144730:CDS 40.0%
GAAGCAGTAAAGTGAAGATG+GGG - chr7_4:21085489-21085508 Msa1144730:CDS 40.0%
AGAGCAACTGTAAGCATTTG+TGG - chr7_4:21085524-21085543 Msa1144730:CDS 40.0%
AAAGAGAGGTTGGAAGGAAA+TGG + chr7_4:21085610-21085629 None:intergenic 40.0%
CAAGTGTCATATACAGACAC+GGG + chr7_4:21085958-21085977 None:intergenic 40.0%
TGTCAAGACCCCATTATTAG+AGG - chr7_4:21085976-21085995 Msa1144730:intron 40.0%
CTTCAACGTGTTGAGTGAAT+CGG - chr7_4:21086129-21086148 Msa1144730:CDS 40.0%
!! TGGTGTAGCTTCTGAAATTC+TGG - chr7_4:21086153-21086172 Msa1144730:CDS 40.0%
GTACTGCTTCGTAACGAAAT+AGG - chr7_4:21086526-21086545 Msa1144730:intron 40.0%
! ATAGTATAGCATGTGCTGCT+AGG - chr7_4:21086551-21086570 Msa1144730:intron 40.0%
! TAGTATAGCATGTGCTGCTA+GGG - chr7_4:21086552-21086571 Msa1144730:intron 40.0%
TAGCAATGCTCCATTGGAAT+TGG - chr7_4:21086589-21086608 Msa1144730:intron 40.0%
AAGTGCTAGCACAAGAATGT+TGG - chr7_4:21086613-21086632 Msa1144730:intron 40.0%
CTAAGCTGTTTGACACAAGT+AGG - chr7_4:21086729-21086748 Msa1144730:intron 40.0%
TATCTCCCATTCCATATTGG+AGG + chr7_4:21086827-21086846 None:intergenic 40.0%
! ATCAACCATGATTTGTCTGG+CGG - chr7_4:21086846-21086865 Msa1144730:intron 40.0%
ATAACACACTGCGTCTTACT+TGG - chr7_4:21087041-21087060 Msa1144730:intron 40.0%
AAATCAGTTCAAGATACCGC+AGG - chr7_4:21087432-21087451 Msa1144730:intron 40.0%
! ACATGATACTTTTGAGCCTG+CGG + chr7_4:21087451-21087470 None:intergenic 40.0%
GATGCATGTGAATTAGTCAG+TGG - chr7_4:21087504-21087523 Msa1144730:intron 40.0%
ATGTGAATTAGTCAGTGGAG+AGG - chr7_4:21087509-21087528 Msa1144730:intron 40.0%
!! TGGAGAGGAGCTTTATTTAG+AGG - chr7_4:21087524-21087543 Msa1144730:intron 40.0%
!! GAGGAGCTTTATTTAGAGGA+TGG - chr7_4:21087528-21087547 Msa1144730:intron 40.0%
CCGATATGCAAAATCTCTTG+TGG + chr7_4:21087652-21087671 None:intergenic 40.0%
ATGTTGAAGATAGCTGGGTA+TGG + chr7_4:21087703-21087722 None:intergenic 40.0%
CCAGTATGTTGAAGATAGCT+GGG + chr7_4:21087708-21087727 None:intergenic 40.0%
ACCAGTATGTTGAAGATAGC+TGG + chr7_4:21087709-21087728 None:intergenic 40.0%
CTACTTCCAGACTTATTTCG+CGG - chr7_4:21087800-21087819 Msa1144730:intron 40.0%
ACTTATTTCGCGGAAATCCA+TGG - chr7_4:21087810-21087829 Msa1144730:intron 40.0%
!! CAGTTTGAACAATGGATTGC+TGG - chr7_4:21087854-21087873 Msa1144730:intron 40.0%
! TGTCTTTTGCAATCCTCTCA+GGG + chr7_4:21087886-21087905 None:intergenic 40.0%
! ATGTCTTTTGCAATCCTCTC+AGG + chr7_4:21087887-21087906 None:intergenic 40.0%
! GCAGATGAATTGATGACTGA+AGG - chr7_4:21087929-21087948 Msa1144730:intron 40.0%
GAAGGAGTTTCCAGAAAACT+TGG - chr7_4:21087947-21087966 Msa1144730:intron 40.0%
!!! ATTGGTTTTTGCTTTGGAGG+AGG - chr7_4:21087974-21087993 Msa1144730:intron 40.0%
! AAAGCAAGCATCTTGGTCTT+GGG + chr7_4:21088020-21088039 None:intergenic 40.0%
TTTCACTTACAGCGCAAAGT+GGG + chr7_4:21088135-21088154 None:intergenic 40.0%
ATTTCACTTACAGCGCAAAG+TGG + chr7_4:21088136-21088155 None:intergenic 40.0%
ACCTGGGAATATCACTACTT+CGG + chr7_4:21088191-21088210 None:intergenic 40.0%
AGAGGCTTTGCAATGCTTGA+TGG + chr7_4:21085569-21085588 None:intergenic 45.0%
AGGAGAAAAGAGAGGTTGGA+AGG + chr7_4:21085616-21085635 None:intergenic 45.0%
CATACAGGAGGAGAAAAGAG+AGG + chr7_4:21085624-21085643 None:intergenic 45.0%
TCATATACAGACACGGGTCA+AGG + chr7_4:21085952-21085971 None:intergenic 45.0%
CGATTCACTCAACACGTTGA+AGG + chr7_4:21086131-21086150 None:intergenic 45.0%
TCGTGGACCAACACAAACAT+CGG - chr7_4:21086192-21086211 Msa1144730:CDS 45.0%
CACTAGTCCGATGTTTGTGT+TGG + chr7_4:21086202-21086221 None:intergenic 45.0%
ATCTGACTAACGCCTTCTCA+AGG + chr7_4:21086272-21086291 None:intergenic 45.0%
ATAACCTCTACCTAGGCAGA+GGG + chr7_4:21086479-21086498 None:intergenic 45.0%
AATAACCTCTACCTAGGCAG+AGG + chr7_4:21086480-21086499 None:intergenic 45.0%
CAGCATTAGCAATGCTCCAT+TGG - chr7_4:21086583-21086602 Msa1144730:intron 45.0%
CTAGCACTTGCCAATTCCAA+TGG + chr7_4:21086602-21086621 None:intergenic 45.0%
TGTTTGACACAAGTAGGCGT+AGG - chr7_4:21086735-21086754 Msa1144730:intron 45.0%
AAGGGTCTGTATGAACTCCT+TGG - chr7_4:21086787-21086806 Msa1144730:intron 45.0%
AGGATTGTTCTTCATGGCCA+AGG + chr7_4:21086807-21086826 None:intergenic 45.0%
!! AGGCCTCTAAAATCATCAGC+AGG - chr7_4:21086872-21086891 Msa1144730:intron 45.0%
CCCAGCTATCTTCAACATAC+TGG - chr7_4:21087705-21087724 Msa1144730:intron 45.0%
GGATTTCCGCGAAATAAGTC+TGG + chr7_4:21087809-21087828 None:intergenic 45.0%
GTTCAAACTGAGTGTTTGGC+TGG + chr7_4:21087844-21087863 None:intergenic 45.0%
TTGCAAAAGACATTACCGCG+TGG - chr7_4:21087894-21087913 Msa1144730:intron 45.0%
CAAAGCAAGCATCTTGGTCT+TGG + chr7_4:21088021-21088040 None:intergenic 45.0%
CAAGACCAAGATGCTTGCTT+TGG - chr7_4:21088019-21088038 Msa1144730:intron 45.0%
!! GGCACTGGAATCTCCTTTTA+TGG - chr7_4:21088040-21088059 Msa1144730:intron 45.0%
TCCGAAGTAGTGATATTCCC+AGG - chr7_4:21088187-21088206 Msa1144730:CDS 45.0%
GTAGTGATATTCCCAGGTAG+AGG - chr7_4:21088193-21088212 Msa1144730:CDS 45.0%
ATATTCCCAGGTAGAGGTCA+TGG - chr7_4:21088199-21088218 Msa1144730:CDS 45.0%
CAAATCCATGACCTCTACCT+GGG + chr7_4:21088207-21088226 None:intergenic 45.0%
TTGTCTTCTTCCACAGATCC+AGG + chr7_4:21088238-21088257 None:intergenic 45.0%
TGGATCTGTGGAAGAAGACA+AGG - chr7_4:21088237-21088256 Msa1144730:CDS 45.0%
GTAGCACTAGCACTAGCACT+AGG - chr7_4:21085467-21085486 Msa1144730:CDS 50.0%
CAGTGAGTAGGAGGATAGAG+AGG + chr7_4:21085587-21085606 None:intergenic 50.0%
AGGAAATGGCAGTGAGTAGG+AGG + chr7_4:21085596-21085615 None:intergenic 50.0%
GGAAGGAAATGGCAGTGAGT+AGG + chr7_4:21085599-21085618 None:intergenic 50.0%
CAGGAGGAGAAAAGAGAGGT+TGG + chr7_4:21085620-21085639 None:intergenic 50.0%
AACGTGTTGAGTGAATCGGC+TGG - chr7_4:21086133-21086152 Msa1144730:CDS 50.0%
AGGATCCTGTTGCCTTGAGA+AGG - chr7_4:21086257-21086276 Msa1144730:CDS 50.0%
TAACGCCTTCTCAAGGCAAC+AGG + chr7_4:21086265-21086284 None:intergenic 50.0%
TCTACCTAGGCAGAGGGAAT+TGG + chr7_4:21086473-21086492 None:intergenic 50.0%
AATTCCCTCTGCCTAGGTAG+AGG - chr7_4:21086472-21086491 Msa1144730:intron 50.0%
CTTCTCCGCCAGACAAATCA+TGG + chr7_4:21086854-21086873 None:intergenic 50.0%
! CATGATTTGTCTGGCGGAGA+AGG - chr7_4:21086852-21086871 Msa1144730:intron 50.0%
GGAGACATGCATTTAGGGAG+TGG - chr7_4:21087216-21087235 Msa1144730:intron 50.0%
! GCATATCGGGTAGCTTGCAA+TGG - chr7_4:21087663-21087682 Msa1144730:intron 50.0%
TCGCGGAAATCCATGGACAA+AGG - chr7_4:21087817-21087836 Msa1144730:intron 50.0%
! TTTGGCTGGTCCTTTGTCCA+TGG + chr7_4:21087830-21087849 None:intergenic 50.0%
TTGCTGGACATAACCCTGAG+AGG - chr7_4:21087870-21087889 Msa1144730:intron 50.0%
ACATTACCGCGTGGACAGAA+TGG - chr7_4:21087903-21087922 Msa1144730:intron 50.0%
! TGGAGGAGGCAAAGTGTTAG+AGG - chr7_4:21087988-21088007 Msa1144730:intron 50.0%
CAGTGCCAAAGCAAGCATCT+TGG + chr7_4:21088027-21088046 None:intergenic 50.0%
CAAGATGCTTGCTTTGGCAC+TGG - chr7_4:21088025-21088044 Msa1144730:intron 50.0%
GCAAATCCATGACCTCTACC+TGG + chr7_4:21088208-21088227 None:intergenic 50.0%
CTTCTTCCACAGATCCAGGT+CGG + chr7_4:21088234-21088253 None:intergenic 50.0%
! AGACACGGGTCAAGGAGCAT+TGG + chr7_4:21085944-21085963 None:intergenic 55.0%
GTCTCCAATTCCCTCTGCCT+AGG - chr7_4:21086466-21086485 Msa1144730:intron 55.0%
TTCCACAGATCCAGGTCGGT+GGG + chr7_4:21088230-21088249 None:intergenic 55.0%
! GCATGTGCTGCTAGGGTCAC+TGG - chr7_4:21086559-21086578 Msa1144730:intron 60.0%
TACCGCGTGGACAGAATGGC+TGG - chr7_4:21087907-21087926 Msa1144730:intron 60.0%
TGCCAGCCATTCTGTCCACG+CGG + chr7_4:21087912-21087931 None:intergenic 60.0%
CATGGATTTGCCCACCGACC+TGG - chr7_4:21088217-21088236 Msa1144730:CDS 60.0%
CTTCCACAGATCCAGGTCGG+TGG + chr7_4:21088231-21088250 None:intergenic 60.0%
TGCCCACCGACCTGGATCTG+TGG - chr7_4:21088225-21088244 Msa1144730:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 21085458 21088315 21085458 ID=Msa1144730;Name=Msa1144730
chr7_4 mRNA 21085458 21088315 21085458 ID=Msa1144730-mRNA-1;Parent=Msa1144730;Name=Msa1144730-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.33|1|1|1|3|0|331
chr7_4 exon 21088135 21088315 21088135 ID=Msa1144730-mRNA-1:exon:5052;Parent=Msa1144730-mRNA-1
chr7_4 exon 21086082 21086376 21086082 ID=Msa1144730-mRNA-1:exon:5051;Parent=Msa1144730-mRNA-1
chr7_4 exon 21085458 21085977 21085458 ID=Msa1144730-mRNA-1:exon:5050;Parent=Msa1144730-mRNA-1
chr7_4 CDS 21088135 21088315 21088135 ID=Msa1144730-mRNA-1:cds;Parent=Msa1144730-mRNA-1
chr7_4 CDS 21086082 21086376 21086082 ID=Msa1144730-mRNA-1:cds;Parent=Msa1144730-mRNA-1
chr7_4 CDS 21085458 21085977 21085458 ID=Msa1144730-mRNA-1:cds;Parent=Msa1144730-mRNA-1
Gene Sequence

>Msa1144730

ATGAGTGAGGTAGCACTAGCACTAGCACTAGGAAGCAGTAAAGTGAAGATGGGGCTAGCAACAGCAAGAGCAACTGTAAGCATTTGTGGTGCTGCTGCTGCTGCATCACCATCAAGCATTGCAAAGCCTCTCTATCCTCCTACTCACTGCCATTTCCTTCCAACCTCTCTTTTCTCCTCCTTTTGTTTTCAGAAAAAAAGCAAATTGATTCTTCAAAAATCAGTTCAAGATACCGCAGGCTCAAAAGTATCATGTAGTTTACTGAATGTGGAAAGTGTGATAGATGATGATGCATGTGAATTAGTCAGTGGAGAGGAGCTTTATTTAGAGGATGGCGATGATAATGTTCATGCTTATCTTTTCAAGGCAGTAAAAAATAACAATGGAATTGGCCTATTGCTTCTTTCTGATGTTTATGGGTTTGAGGACTCCTCCACAAGAGATTTTGCATATCGGGTAGCTTGCAATGGTTTCAACGTTCTACTTCCAGACTTATTTCGCGGAAATCCATGGACAAAGGACCAGCCAAACACTCAGTTTGAACAATGGATTGCTGGACATAACCCTGAGAGGATTGCAAAAGACATTACCGCGTGGACAGAATGGCTGGCAGATGAATTGATGACTGAAGGAGTTTCCAGAAAACTTGGCATAATTGGTTTTTGCTTTGGAGGAGGCAAAGTGTTAGAGGTGCTAGCCCAAGACCAAGATGCTTGCTTTGGCACTGGAATCTCCTTTTATGGTACAAGGATAGATTCGCTTGTTGCTTCTGATGTAAAAGTTCCCGTCTTGTTTATTTTAGGGGACAATGACCCACTTTGCGCTGTAAGTGAAATAAAAAATATTCAGACTACAATTGATAGTGGTTCCGAAGTAGTGATATTCCCAGGTAGAGGTCATGGATTTGCCCACCGACCTGGATCTGTGGAAGAAGACAAGGACGCTGAACAAGCCTATGTAATTATGAGAGACTGGATACATGAACATTTGGTGTAA

Protein sequence

>Msa1144730

MSEVALALALGSSKVKMGLATARATVSICGAAAAASPSSIAKPLYPPTHCHFLPTSLFSSFCFQKKSKLILQKSVQDTAGSKVSCSLLNVESVIDDDACELVSGEELYLEDGDDNVHAYLFKAVKNNNGIGLLLLSDVYGFEDSSTRDFAYRVACNGFNVLLPDLFRGNPWTKDQPNTQFEQWIAGHNPERIAKDITAWTEWLADELMTEGVSRKLGIIGFCFGGGKVLEVLAQDQDACFGTGISFYGTRIDSLVASDVKVPVLFILGDNDPLCAVSEIKNIQTTIDSGSEVVIFPGRGHGFAHRPGSVEEDKDAEQAYVIMRDWIHEHLV*