AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0469950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469950 MtrunA17_Chr3g0077171 96.096 333 11 1 1 331 1 333 0.0 658
Msa0469950 MtrunA17_Chr4g0065821 27.805 205 129 6 132 330 42 233 1.89e-18 83.2
Msa0469950 MtrunA17_Chr2g0287281 27.358 212 139 6 126 330 40 243 7.41e-18 81.6
Msa0469950 MtrunA17_Chr4g0065781 29.358 218 143 6 116 330 28 237 5.11e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469950 AT1G35420.3 60.256 234 89 1 98 331 45 274 9.10e-111 323
Msa0469950 AT1G35420.1 60.256 234 89 1 98 331 81 310 1.67e-110 324
Msa0469950 AT1G35420.2 60.256 234 89 1 98 331 86 315 2.13e-110 324
Msa0469950 AT3G23600.1 25.000 200 136 5 132 325 42 233 1.55e-13 69.7
Msa0469950 AT3G23570.3 23.944 213 142 6 127 330 37 238 1.59e-12 66.6
Msa0469950 AT3G23570.1 23.944 213 142 6 127 330 37 238 1.59e-12 66.6
Msa0469950 AT3G23570.2 23.944 213 142 6 127 330 37 238 1.59e-12 66.6
Msa0469950 AT3G23600.2 24.500 200 134 4 132 325 42 230 1.76e-12 66.6
Msa0469950 AT2G32520.4 26.022 269 155 13 84 330 30 276 1.82e-12 67.0
Msa0469950 AT2G32520.2 26.022 269 155 13 84 330 70 316 3.79e-12 66.6
Msa0469950 AT2G32520.1 25.806 248 146 12 105 330 7 238 6.42e-12 65.1
Msa0469950 AT2G32520.3 26.638 229 133 11 124 330 9 224 1.28e-11 63.9

Find 72 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTTCTTTCTGATGTTTA+TGG 0.109167 3_3:-71990285 Msa0469950:CDS
TCCAGAAAACTTGGCATAAT+TGG 0.171939 3_3:-71989941 Msa0469950:CDS
TGCTTCTTTCTGATGTTTAT+GGG 0.222443 3_3:-71990284 Msa0469950:CDS
ATCTATCCTTGTACCATAAA+AGG 0.252752 3_3:+71989844 None:intergenic
CAAAGCAAGCATCTTGGTCT+TGG 0.330779 3_3:+71989879 None:intergenic
TTCTGATGTTTATGGGTTTG+AGG 0.335907 3_3:-71990277 Msa0469950:CDS
TGGAGAGGAGCTTTATTTAG+AGG 0.337897 3_3:-71990373 Msa0469950:CDS
CATTGTTCAAACTGAGTGTT+TGG 0.394017 3_3:+71990052 None:intergenic
CAAGACCAAGATGCTTGCTT+TGG 0.399499 3_3:-71989878 Msa0469950:CDS
TGGAGGAGGCAAAGTGTTAG+AGG 0.399979 3_3:-71989909 Msa0469950:CDS
CAGTTTGAACAATGGATTGC+TGG 0.409924 3_3:-71990043 Msa0469950:CDS
AAAGAGAGGTTGGAAGGAAA+TGG 0.413388 3_3:+71992290 None:intergenic
TTGTCTTCTTCCACAGATCC+AGG 0.424413 3_3:+71989662 None:intergenic
AGAGCAACTGTAAGCATTTG+TGG 0.439788 3_3:-71992373 Msa0469950:CDS
AAACATCAGAAAGAAGCAAT+AGG 0.452098 3_3:+71990289 None:intergenic
CAAGATGCTTGCTTTGGCAC+TGG 0.457644 3_3:-71989872 Msa0469950:CDS
TTTGGCTGGTCCTTTGTCCA+TGG 0.461066 3_3:+71990070 None:intergenic
ATTCAGACTACAATTGATAG+TGG 0.467846 3_3:-71989734 Msa0469950:CDS
GGATTTCCGCGAAATAAGTC+TGG 0.473584 3_3:+71990091 None:intergenic
CATGGATTTGCCCACCGACC+TGG 0.475732 3_3:-71989680 Msa0469950:CDS
AGGAAGCAGTAAAGTGAAGA+TGG 0.475926 3_3:-71992410 Msa0469950:CDS
CAGGAGGAGAAAAGAGAGGT+TGG 0.480980 3_3:+71992280 None:intergenic
AGAGGCTTTGCAATGCTTGA+TGG 0.482040 3_3:+71992331 None:intergenic
AAAGCAAGCATCTTGGTCTT+GGG 0.482070 3_3:+71989880 None:intergenic
ATCATGTAGTTTACTGAATG+TGG 0.483578 3_3:-71990433 Msa0469950:CDS
GTTCAAACTGAGTGTTTGGC+TGG 0.486742 3_3:+71990056 None:intergenic
AGGAAATGGCAGTGAGTAGG+AGG 0.496922 3_3:+71992304 None:intergenic
AGGAGAAAAGAGAGGTTGGA+AGG 0.497121 3_3:+71992284 None:intergenic
CCTATGTAATTATGAGAGAC+TGG 0.497192 3_3:-71989625 Msa0469950:CDS
GCAAATCCATGACCTCTACC+TGG 0.498184 3_3:+71989692 None:intergenic
AGACTGGATACATGAACATT+TGG 0.500231 3_3:-71989609 Msa0469950:CDS
ACTTATTTCGCGGAAATCCA+TGG 0.511640 3_3:-71990087 Msa0469950:CDS
GAAGGAGTTTCCAGAAAACT+TGG 0.511807 3_3:-71989950 Msa0469950:CDS
GGAAGCAGTAAAGTGAAGAT+GGG 0.524339 3_3:-71992409 Msa0469950:CDS
GAGGAGCTTTATTTAGAGGA+TGG 0.526108 3_3:-71990369 Msa0469950:CDS
GGAAGGAAATGGCAGTGAGT+AGG 0.529323 3_3:+71992301 None:intergenic
CTACTTCCAGACTTATTTCG+CGG 0.530504 3_3:-71990097 Msa0469950:CDS
CCAGTCTCTCATAATTACAT+AGG 0.533492 3_3:+71989625 None:intergenic
TACCGCGTGGACAGAATGGC+TGG 0.535143 3_3:-71989990 Msa0469950:CDS
ATATTCCCAGGTAGAGGTCA+TGG 0.536948 3_3:-71989698 Msa0469950:CDS
CTTCCACAGATCCAGGTCGG+TGG 0.541392 3_3:+71989669 None:intergenic
GCATATCGGGTAGCTTGCAA+TGG 0.544452 3_3:-71990234 Msa0469950:CDS
CCGATATGCAAAATCTCTTG+TGG 0.552409 3_3:+71990248 None:intergenic
TCCCCTAAAATAAACAAGAC+GGG 0.553707 3_3:+71989794 None:intergenic
CAGTGCCAAAGCAAGCATCT+TGG 0.554303 3_3:+71989873 None:intergenic
ACATTACCGCGTGGACAGAA+TGG 0.563574 3_3:-71989994 Msa0469950:CDS
TGCCCACCGACCTGGATCTG+TGG 0.579207 3_3:-71989672 Msa0469950:CDS
TTCCACAGATCCAGGTCGGT+GGG 0.580911 3_3:+71989670 None:intergenic
ACCTGGGAATATCACTACTT+CGG 0.584926 3_3:+71989709 None:intergenic
GTCCCCTAAAATAAACAAGA+CGG 0.586963 3_3:+71989793 None:intergenic
GTAGTGATATTCCCAGGTAG+AGG 0.589122 3_3:-71989704 Msa0469950:CDS
TCCGAAGTAGTGATATTCCC+AGG 0.591003 3_3:-71989710 Msa0469950:CDS
TTTCACTTACAGCGCAAAGT+GGG 0.603080 3_3:+71989765 None:intergenic
GTAGCACTAGCACTAGCACT+AGG 0.604565 3_3:-71992430 Msa0469950:CDS
TTAATTATGATTAATGAGTG+AGG 0.606747 3_3:-71992452 None:intergenic
CTTCTTCCACAGATCCAGGT+CGG 0.616133 3_3:+71989666 None:intergenic
ATTTCACTTACAGCGCAAAG+TGG 0.618765 3_3:+71989764 None:intergenic
AAATCAGTTCAAGATACCGC+AGG 0.618922 3_3:-71990465 Msa0469950:CDS
CAAATCCATGACCTCTACCT+GGG 0.634499 3_3:+71989693 None:intergenic
GCAGATGAATTGATGACTGA+AGG 0.634603 3_3:-71989968 Msa0469950:CDS
CAGTGAGTAGGAGGATAGAG+AGG 0.637427 3_3:+71992313 None:intergenic
TGGATCTGTGGAAGAAGACA+AGG 0.642473 3_3:-71989660 Msa0469950:CDS
CATACAGGAGGAGAAAAGAG+AGG 0.643705 3_3:+71992276 None:intergenic
CAAACACTCAGTTTGAACAA+TGG 0.646343 3_3:-71990051 Msa0469950:CDS
ATATGCAAAATCTCTTGTGG+AGG 0.652296 3_3:+71990251 None:intergenic
TCGCGGAAATCCATGGACAA+AGG 0.657862 3_3:-71990080 Msa0469950:CDS
GAAGCAGTAAAGTGAAGATG+GGG 0.669526 3_3:-71992408 Msa0469950:CDS
ATGTGAATTAGTCAGTGGAG+AGG 0.695974 3_3:-71990388 Msa0469950:CDS
TTGCTGGACATAACCCTGAG+AGG 0.698077 3_3:-71990027 Msa0469950:CDS
GATGCATGTGAATTAGTCAG+TGG 0.732474 3_3:-71990393 Msa0469950:CDS
TGCCAGCCATTCTGTCCACG+CGG 0.754261 3_3:+71989988 None:intergenic
TTGCAAAAGACATTACCGCG+TGG 0.790610 3_3:-71990003 Msa0469950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAATAATTAGCTATT+AGG + chr3_3:71991486-71991505 None:intergenic 10.0%
!! ATACAACTAAAAAAATCATT+TGG - chr3_3:71989854-71989873 Msa0469950:CDS 15.0%
!!! TGATATATTTTCAACAAAAA+TGG - chr3_3:71989939-71989958 Msa0469950:CDS 15.0%
!! GAGAAAATGATTAATTATAT+TGG - chr3_3:71990006-71990025 Msa0469950:CDS 15.0%
!! AAACTAAATTTGATCTTAAT+TGG + chr3_3:71991412-71991431 None:intergenic 15.0%
!!! ACTTTTATTTACTTAACCAA+TGG + chr3_3:71989965-71989984 None:intergenic 20.0%
!!! TTCTAAAAACCTCTAATAAT+GGG + chr3_3:71990134-71990153 None:intergenic 20.0%
!!! ATTCTAAAAACCTCTAATAA+TGG + chr3_3:71990135-71990154 None:intergenic 20.0%
!! ACAAAAGAAAAGTAGAATTT+AGG + chr3_3:71990238-71990257 None:intergenic 20.0%
!!! TACATTTGATGACTAAAAAA+AGG + chr3_3:71990791-71990810 None:intergenic 20.0%
!!! AATATTGCTATTATCTTCTA+AGG - chr3_3:71990914-71990933 Msa0469950:intron 20.0%
!!! ATATTGCTATTATCTTCTAA+GGG - chr3_3:71990915-71990934 Msa0469950:intron 20.0%
!! ATTATGATTGTTAAGTATCT+AGG - chr3_3:71991090-71991109 Msa0469950:intron 20.0%
!! GTAAAAAATAACAATGGAAT+TGG - chr3_3:71991731-71991750 Msa0469950:intron 20.0%
!! TAAATAAATATGCAAAAGAG+AGG + chr3_3:71991900-71991919 None:intergenic 20.0%
! TCTCTGTAAAGTATATATAC+TGG + chr3_3:71989990-71990009 None:intergenic 25.0%
! TCTAAAAACCTCTAATAATG+GGG + chr3_3:71990133-71990152 None:intergenic 25.0%
!!! ATACCATGTTTTTACTTACT+AGG - chr3_3:71990436-71990455 Msa0469950:CDS 25.0%
!!! TACCATGTTTTTACTTACTA+GGG - chr3_3:71990437-71990456 Msa0469950:CDS 25.0%
! GAAGATAATAGCAATATTCT+TGG + chr3_3:71990912-71990931 None:intergenic 25.0%
! AATCATAATGTCAACTTTCT+TGG + chr3_3:71991079-71991098 None:intergenic 25.0%
! CATTTCTATGTGACATATAT+TGG - chr3_3:71991222-71991241 Msa0469950:intron 25.0%
!! TCAATCGATTTAAACATCTA+GGG + chr3_3:71991250-71991269 None:intergenic 25.0%
!! ATCAATCGATTTAAACATCT+AGG + chr3_3:71991251-71991270 None:intergenic 25.0%
! AAGGCAGTAAAAAATAACAA+TGG - chr3_3:71991725-71991744 Msa0469950:intron 25.0%
AAGAAAGAAAGAGAACATAC+AGG + chr3_3:71989785-71989804 None:intergenic 30.0%
GAATGTGAATAGATGATGAA+AGG + chr3_3:71989827-71989846 None:intergenic 30.0%
! TTTTCAACAAAAATGGCCAT+TGG - chr3_3:71989946-71989965 Msa0469950:CDS 30.0%
! GTGATTTTGTGATACACTTT+AGG + chr3_3:71990173-71990192 None:intergenic 30.0%
! TCTTACTTCTTAGTTTGAGT+TGG - chr3_3:71990205-71990224 Msa0469950:intron 30.0%
AGAATCATAGTGAAGCAATT+TGG - chr3_3:71990474-71990493 Msa0469950:CDS 30.0%
GATAATAGTATACACACTCT+CGG - chr3_3:71990500-71990519 Msa0469950:CDS 30.0%
ACATCAATTCTTTAAATCCC+TGG - chr3_3:71990542-71990561 Msa0469950:intron 30.0%
TTGACTCTGAATTTCTTTCA+CGG - chr3_3:71990581-71990600 Msa0469950:intron 30.0%
TGTAAAATCAGCAATGACTT+TGG - chr3_3:71990807-71990826 Msa0469950:intron 30.0%
TAATAGCAATATTCTTGGCT+TGG + chr3_3:71990907-71990926 None:intergenic 30.0%
CTAAACTGATCTTTGTACTA+TGG - chr3_3:71991341-71991360 Msa0469950:intron 30.0%
! TTGATCTTAATTGGTGTCTA+AGG + chr3_3:71991403-71991422 None:intergenic 30.0%
ACTGAAGTTTCTTAGTTACA+TGG - chr3_3:71991456-71991475 Msa0469950:intron 30.0%
ATCATGTAGTTTACTGAATG+TGG - chr3_3:71991610-71991629 Msa0469950:intron 30.0%
! TGTTCATGCTTATCTTTTCA+AGG - chr3_3:71991706-71991725 Msa0469950:intron 30.0%
AAACATCAGAAAGAAGCAAT+AGG + chr3_3:71991757-71991776 None:intergenic 30.0%
TTGCTTCTTTCTGATGTTTA+TGG - chr3_3:71991758-71991777 Msa0469950:intron 30.0%
TGCTTCTTTCTGATGTTTAT+GGG - chr3_3:71991759-71991778 Msa0469950:intron 30.0%
!!! ATAATTGGTTTTTGCTTTGG+AGG - chr3_3:71992117-71992136 Msa0469950:intron 30.0%
ATCTATCCTTGTACCATAAA+AGG + chr3_3:71992202-71992221 None:intergenic 30.0%
!!! TTCCCGTCTTGTTTATTTTA+GGG - chr3_3:71992247-71992266 Msa0469950:intron 30.0%
ATTCAGACTACAATTGATAG+TGG - chr3_3:71992309-71992328 Msa0469950:CDS 30.0%
AAAGAAAGAGAACATACAGG+AGG + chr3_3:71989782-71989801 None:intergenic 35.0%
GTGAATAGATGATGAAAGGA+GGG + chr3_3:71989823-71989842 None:intergenic 35.0%
TGTGAATAGATGATGAAAGG+AGG + chr3_3:71989824-71989843 None:intergenic 35.0%
TGAAAAACACACAACAGAGT+AGG - chr3_3:71989902-71989921 Msa0469950:CDS 35.0%
ACAAGTGTCATATACAGACA+CGG + chr3_3:71990105-71990124 None:intergenic 35.0%
!! CACTTTAGGCTGTTTTATGT+TGG + chr3_3:71990159-71990178 None:intergenic 35.0%
GTTTAGCATATATGACATCG+TGG - chr3_3:71990321-71990340 Msa0469950:CDS 35.0%
! TTGACATTCTGTGTTTTCTG+AGG - chr3_3:71990383-71990402 Msa0469950:CDS 35.0%
AGCCCTAGTAAGTAAAAACA+TGG + chr3_3:71990442-71990461 None:intergenic 35.0%
AAACTCAAAACTGATCACCA+GGG + chr3_3:71990562-71990581 None:intergenic 35.0%
AAAACTCAAAACTGATCACC+AGG + chr3_3:71990563-71990582 None:intergenic 35.0%
CATGTAAATAACCTCTACCT+AGG + chr3_3:71990632-71990651 None:intergenic 35.0%
! AAGCAGTACAAGATTAGCTA+TGG + chr3_3:71990661-71990680 None:intergenic 35.0%
TATTGGAGGATTGTTCTTCA+TGG + chr3_3:71990959-71990978 None:intergenic 35.0%
TGAAGAACAATCCTCCAATA+TGG - chr3_3:71990959-71990978 Msa0469950:intron 35.0%
AACAATCCTCCAATATGGAA+TGG - chr3_3:71990964-71990983 Msa0469950:intron 35.0%
ACAATCCTCCAATATGGAAT+GGG - chr3_3:71990965-71990984 Msa0469950:intron 35.0%
TGATATCTCCCATTCCATAT+TGG + chr3_3:71990976-71990995 None:intergenic 35.0%
! GATATCAACCATGATTTGTC+TGG - chr3_3:71990989-71991008 Msa0469950:intron 35.0%
! TTTCCTGCTGATGATTTTAG+AGG + chr3_3:71991024-71991043 None:intergenic 35.0%
TTCTGTTTGCAGCTTTCTAT+AGG + chr3_3:71991047-71991066 None:intergenic 35.0%
TGTGTTATATGCAAGTGTTC+GGG + chr3_3:71991175-71991194 None:intergenic 35.0%
GTGTGTTATATGCAAGTGTT+CGG + chr3_3:71991176-71991195 None:intergenic 35.0%
CACAAAAGAAAAAACCCCAA+TGG - chr3_3:71991318-71991337 Msa0469950:intron 35.0%
AAAGATCAGTTTAGCCATTG+GGG + chr3_3:71991335-71991354 None:intergenic 35.0%
CAAAGATCAGTTTAGCCATT+GGG + chr3_3:71991336-71991355 None:intergenic 35.0%
ACAAAGATCAGTTTAGCCAT+TGG + chr3_3:71991337-71991356 None:intergenic 35.0%
TACTATGGAGACATGCATTT+AGG - chr3_3:71991356-71991375 Msa0469950:intron 35.0%
ACTATGGAGACATGCATTTA+GGG - chr3_3:71991357-71991376 Msa0469950:intron 35.0%
CTGAAGAATTGCATTCAACA+AGG + chr3_3:71991523-71991542 None:intergenic 35.0%
TTCTGATGTTTATGGGTTTG+AGG - chr3_3:71991766-71991785 Msa0469950:intron 35.0%
ATATGCAAAATCTCTTGTGG+AGG + chr3_3:71991795-71991814 None:intergenic 35.0%
! CCACAAGAGATTTTGCATAT+CGG - chr3_3:71991795-71991814 Msa0469950:intron 35.0%
! CACAAGAGATTTTGCATATC+GGG - chr3_3:71991796-71991815 Msa0469950:intron 35.0%
CATTGTTCAAACTGAGTGTT+TGG + chr3_3:71991994-71992013 None:intergenic 35.0%
CAAACACTCAGTTTGAACAA+TGG - chr3_3:71991992-71992011 Msa0469950:intron 35.0%
TCCAGAAAACTTGGCATAAT+TGG - chr3_3:71992102-71992121 Msa0469950:intron 35.0%
! ACCAATTATGCCAAGTTTTC+TGG + chr3_3:71992106-71992125 None:intergenic 35.0%
!!! GGCATAATTGGTTTTTGCTT+TGG - chr3_3:71992114-71992133 Msa0469950:intron 35.0%
! GAATCTCCTTTTATGGTACA+AGG - chr3_3:71992193-71992212 Msa0469950:intron 35.0%
!!! GTTCCCGTCTTGTTTATTTT+AGG - chr3_3:71992246-71992265 Msa0469950:intron 35.0%
!!! TCCCGTCTTGTTTATTTTAG+GGG - chr3_3:71992248-71992267 Msa0469950:intron 35.0%
TCCCCTAAAATAAACAAGAC+GGG + chr3_3:71992252-71992271 None:intergenic 35.0%
GTCCCCTAAAATAAACAAGA+CGG + chr3_3:71992253-71992272 None:intergenic 35.0%
CCAGTCTCTCATAATTACAT+AGG + chr3_3:71992421-71992440 None:intergenic 35.0%
CCTATGTAATTATGAGAGAC+TGG - chr3_3:71992418-71992437 Msa0469950:CDS 35.0%
AGACTGGATACATGAACATT+TGG - chr3_3:71992434-71992453 Msa0469950:CDS 35.0%
AGGAAGCAGTAAAGTGAAGA+TGG - chr3_3:71989633-71989652 Msa0469950:CDS 40.0%
GGAAGCAGTAAAGTGAAGAT+GGG - chr3_3:71989634-71989653 Msa0469950:CDS 40.0%
GAAGCAGTAAAGTGAAGATG+GGG - chr3_3:71989635-71989654 Msa0469950:CDS 40.0%
AGAGCAACTGTAAGCATTTG+TGG - chr3_3:71989670-71989689 Msa0469950:CDS 40.0%
AAAGAGAGGTTGGAAGGAAA+TGG + chr3_3:71989756-71989775 None:intergenic 40.0%
CAAGTGTCATATACAGACAC+GGG + chr3_3:71990104-71990123 None:intergenic 40.0%
TGTCAAGACCCCATTATTAG+AGG - chr3_3:71990122-71990141 Msa0469950:intron 40.0%
CTTCAACGTGTTGAGTGAAT+CGG - chr3_3:71990275-71990294 Msa0469950:CDS 40.0%
!! TGGTGTAGCTTCTGAAATTC+TGG - chr3_3:71990299-71990318 Msa0469950:CDS 40.0%
GTACTGCTTCGTAACGAAAT+AGG - chr3_3:71990672-71990691 Msa0469950:intron 40.0%
! ATAGTATAGCATGTGCTGCT+AGG - chr3_3:71990697-71990716 Msa0469950:intron 40.0%
! TAGTATAGCATGTGCTGCTA+GGG - chr3_3:71990698-71990717 Msa0469950:intron 40.0%
TAGCAATGCTCCATTGGAAT+TGG - chr3_3:71990735-71990754 Msa0469950:intron 40.0%
AAGTGCTAGCACAAGAATGT+TGG - chr3_3:71990759-71990778 Msa0469950:intron 40.0%
CTAAGCTGTTTGACACAAGT+AGG - chr3_3:71990875-71990894 Msa0469950:intron 40.0%
TATCTCCCATTCCATATTGG+AGG + chr3_3:71990973-71990992 None:intergenic 40.0%
! ATCAACCATGATTTGTCTGG+CGG - chr3_3:71990992-71991011 Msa0469950:intron 40.0%
ATAACACACTGCGTCTTACT+TGG - chr3_3:71991187-71991206 Msa0469950:intron 40.0%
AAATCAGTTCAAGATACCGC+AGG - chr3_3:71991578-71991597 Msa0469950:intron 40.0%
! ACATGATACTTTTGAGCCTG+CGG + chr3_3:71991597-71991616 None:intergenic 40.0%
GATGCATGTGAATTAGTCAG+TGG - chr3_3:71991650-71991669 Msa0469950:intron 40.0%
ATGTGAATTAGTCAGTGGAG+AGG - chr3_3:71991655-71991674 Msa0469950:intron 40.0%
!! TGGAGAGGAGCTTTATTTAG+AGG - chr3_3:71991670-71991689 Msa0469950:intron 40.0%
!! GAGGAGCTTTATTTAGAGGA+TGG - chr3_3:71991674-71991693 Msa0469950:intron 40.0%
CCGATATGCAAAATCTCTTG+TGG + chr3_3:71991798-71991817 None:intergenic 40.0%
ATGTTGAAGATAGCTGGGTA+TGG + chr3_3:71991849-71991868 None:intergenic 40.0%
CCAGTATGTTGAAGATAGCT+GGG + chr3_3:71991854-71991873 None:intergenic 40.0%
ACCAGTATGTTGAAGATAGC+TGG + chr3_3:71991855-71991874 None:intergenic 40.0%
CTACTTCCAGACTTATTTCG+CGG - chr3_3:71991946-71991965 Msa0469950:intron 40.0%
ACTTATTTCGCGGAAATCCA+TGG - chr3_3:71991956-71991975 Msa0469950:intron 40.0%
!! CAGTTTGAACAATGGATTGC+TGG - chr3_3:71992000-71992019 Msa0469950:intron 40.0%
! TGTCTTTTGCAATCCTCTCA+GGG + chr3_3:71992032-71992051 None:intergenic 40.0%
! ATGTCTTTTGCAATCCTCTC+AGG + chr3_3:71992033-71992052 None:intergenic 40.0%
! GCAGATGAATTGATGACTGA+AGG - chr3_3:71992075-71992094 Msa0469950:intron 40.0%
GAAGGAGTTTCCAGAAAACT+TGG - chr3_3:71992093-71992112 Msa0469950:intron 40.0%
!!! ATTGGTTTTTGCTTTGGAGG+AGG - chr3_3:71992120-71992139 Msa0469950:intron 40.0%
! AAAGCAAGCATCTTGGTCTT+GGG + chr3_3:71992166-71992185 None:intergenic 40.0%
TTTCACTTACAGCGCAAAGT+GGG + chr3_3:71992281-71992300 None:intergenic 40.0%
ATTTCACTTACAGCGCAAAG+TGG + chr3_3:71992282-71992301 None:intergenic 40.0%
ACCTGGGAATATCACTACTT+CGG + chr3_3:71992337-71992356 None:intergenic 40.0%
AGAGGCTTTGCAATGCTTGA+TGG + chr3_3:71989715-71989734 None:intergenic 45.0%
AGGAGAAAAGAGAGGTTGGA+AGG + chr3_3:71989762-71989781 None:intergenic 45.0%
CATACAGGAGGAGAAAAGAG+AGG + chr3_3:71989770-71989789 None:intergenic 45.0%
TCATATACAGACACGGGTCA+AGG + chr3_3:71990098-71990117 None:intergenic 45.0%
CGATTCACTCAACACGTTGA+AGG + chr3_3:71990277-71990296 None:intergenic 45.0%
TCGTGGACCAACACAAACAT+CGG - chr3_3:71990338-71990357 Msa0469950:CDS 45.0%
CACTAGTCCGATGTTTGTGT+TGG + chr3_3:71990348-71990367 None:intergenic 45.0%
ATCTGACTAACGCCTTCTCA+AGG + chr3_3:71990418-71990437 None:intergenic 45.0%
ATAACCTCTACCTAGGCAGA+GGG + chr3_3:71990625-71990644 None:intergenic 45.0%
AATAACCTCTACCTAGGCAG+AGG + chr3_3:71990626-71990645 None:intergenic 45.0%
CAGCATTAGCAATGCTCCAT+TGG - chr3_3:71990729-71990748 Msa0469950:intron 45.0%
CTAGCACTTGCCAATTCCAA+TGG + chr3_3:71990748-71990767 None:intergenic 45.0%
TGTTTGACACAAGTAGGCGT+AGG - chr3_3:71990881-71990900 Msa0469950:intron 45.0%
AAGGGTCTGTATGAACTCCT+TGG - chr3_3:71990933-71990952 Msa0469950:intron 45.0%
AGGATTGTTCTTCATGGCCA+AGG + chr3_3:71990953-71990972 None:intergenic 45.0%
!! AGGCCTCTAAAATCATCAGC+AGG - chr3_3:71991018-71991037 Msa0469950:intron 45.0%
CCCAGCTATCTTCAACATAC+TGG - chr3_3:71991851-71991870 Msa0469950:intron 45.0%
GGATTTCCGCGAAATAAGTC+TGG + chr3_3:71991955-71991974 None:intergenic 45.0%
GTTCAAACTGAGTGTTTGGC+TGG + chr3_3:71991990-71992009 None:intergenic 45.0%
TTGCAAAAGACATTACCGCG+TGG - chr3_3:71992040-71992059 Msa0469950:intron 45.0%
CAAAGCAAGCATCTTGGTCT+TGG + chr3_3:71992167-71992186 None:intergenic 45.0%
CAAGACCAAGATGCTTGCTT+TGG - chr3_3:71992165-71992184 Msa0469950:intron 45.0%
!! GGCACTGGAATCTCCTTTTA+TGG - chr3_3:71992186-71992205 Msa0469950:intron 45.0%
TCCGAAGTAGTGATATTCCC+AGG - chr3_3:71992333-71992352 Msa0469950:CDS 45.0%
GTAGTGATATTCCCAGGTAG+AGG - chr3_3:71992339-71992358 Msa0469950:CDS 45.0%
ATATTCCCAGGTAGAGGTCA+TGG - chr3_3:71992345-71992364 Msa0469950:CDS 45.0%
CAAATCCATGACCTCTACCT+GGG + chr3_3:71992353-71992372 None:intergenic 45.0%
TTGTCTTCTTCCACAGATCC+AGG + chr3_3:71992384-71992403 None:intergenic 45.0%
TGGATCTGTGGAAGAAGACA+AGG - chr3_3:71992383-71992402 Msa0469950:CDS 45.0%
GTAGCACTAGCACTAGCACT+AGG - chr3_3:71989613-71989632 Msa0469950:CDS 50.0%
CAGTGAGTAGGAGGATAGAG+AGG + chr3_3:71989733-71989752 None:intergenic 50.0%
AGGAAATGGCAGTGAGTAGG+AGG + chr3_3:71989742-71989761 None:intergenic 50.0%
GGAAGGAAATGGCAGTGAGT+AGG + chr3_3:71989745-71989764 None:intergenic 50.0%
CAGGAGGAGAAAAGAGAGGT+TGG + chr3_3:71989766-71989785 None:intergenic 50.0%
AACGTGTTGAGTGAATCGGC+TGG - chr3_3:71990279-71990298 Msa0469950:CDS 50.0%
AGGATCCTGTTGCCTTGAGA+AGG - chr3_3:71990403-71990422 Msa0469950:CDS 50.0%
TAACGCCTTCTCAAGGCAAC+AGG + chr3_3:71990411-71990430 None:intergenic 50.0%
TCTACCTAGGCAGAGGGAAT+TGG + chr3_3:71990619-71990638 None:intergenic 50.0%
AATTCCCTCTGCCTAGGTAG+AGG - chr3_3:71990618-71990637 Msa0469950:intron 50.0%
CTTCTCCGCCAGACAAATCA+TGG + chr3_3:71991000-71991019 None:intergenic 50.0%
! CATGATTTGTCTGGCGGAGA+AGG - chr3_3:71990998-71991017 Msa0469950:intron 50.0%
GGAGACATGCATTTAGGGAG+TGG - chr3_3:71991362-71991381 Msa0469950:intron 50.0%
! GCATATCGGGTAGCTTGCAA+TGG - chr3_3:71991809-71991828 Msa0469950:intron 50.0%
TCGCGGAAATCCATGGACAA+AGG - chr3_3:71991963-71991982 Msa0469950:intron 50.0%
! TTTGGCTGGTCCTTTGTCCA+TGG + chr3_3:71991976-71991995 None:intergenic 50.0%
TTGCTGGACATAACCCTGAG+AGG - chr3_3:71992016-71992035 Msa0469950:intron 50.0%
ACATTACCGCGTGGACAGAA+TGG - chr3_3:71992049-71992068 Msa0469950:intron 50.0%
! TGGAGGAGGCAAAGTGTTAG+AGG - chr3_3:71992134-71992153 Msa0469950:intron 50.0%
CAGTGCCAAAGCAAGCATCT+TGG + chr3_3:71992173-71992192 None:intergenic 50.0%
CAAGATGCTTGCTTTGGCAC+TGG - chr3_3:71992171-71992190 Msa0469950:intron 50.0%
GCAAATCCATGACCTCTACC+TGG + chr3_3:71992354-71992373 None:intergenic 50.0%
CTTCTTCCACAGATCCAGGT+CGG + chr3_3:71992380-71992399 None:intergenic 50.0%
! AGACACGGGTCAAGGAGCAT+TGG + chr3_3:71990090-71990109 None:intergenic 55.0%
GTCTCCAATTCCCTCTGCCT+AGG - chr3_3:71990612-71990631 Msa0469950:intron 55.0%
TTCCACAGATCCAGGTCGGT+GGG + chr3_3:71992376-71992395 None:intergenic 55.0%
! GCATGTGCTGCTAGGGTCAC+TGG - chr3_3:71990705-71990724 Msa0469950:intron 60.0%
TACCGCGTGGACAGAATGGC+TGG - chr3_3:71992053-71992072 Msa0469950:intron 60.0%
TGCCAGCCATTCTGTCCACG+CGG + chr3_3:71992058-71992077 None:intergenic 60.0%
CATGGATTTGCCCACCGACC+TGG - chr3_3:71992363-71992382 Msa0469950:CDS 60.0%
CTTCCACAGATCCAGGTCGG+TGG + chr3_3:71992377-71992396 None:intergenic 60.0%
TGCCCACCGACCTGGATCTG+TGG - chr3_3:71992371-71992390 Msa0469950:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 71989604 71992461 71989604 ID=Msa0469950;Name=Msa0469950
chr3_3 mRNA 71989604 71992461 71989604 ID=Msa0469950-mRNA-1;Parent=Msa0469950;Name=Msa0469950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.33|1|1|1|3|0|331
chr3_3 exon 71992281 71992461 71992281 ID=Msa0469950-mRNA-1:exon:17816;Parent=Msa0469950-mRNA-1
chr3_3 exon 71990228 71990522 71990228 ID=Msa0469950-mRNA-1:exon:17815;Parent=Msa0469950-mRNA-1
chr3_3 exon 71989604 71990123 71989604 ID=Msa0469950-mRNA-1:exon:17814;Parent=Msa0469950-mRNA-1
chr3_3 CDS 71992281 71992461 71992281 ID=Msa0469950-mRNA-1:cds;Parent=Msa0469950-mRNA-1
chr3_3 CDS 71990228 71990522 71990228 ID=Msa0469950-mRNA-1:cds;Parent=Msa0469950-mRNA-1
chr3_3 CDS 71989604 71990123 71989604 ID=Msa0469950-mRNA-1:cds;Parent=Msa0469950-mRNA-1
Gene Sequence

>Msa0469950

ATGAGTGAGGTAGCACTAGCACTAGCACTAGGAAGCAGTAAAGTGAAGATGGGGCTAGCAACAGCAAGAGCAACTGTAAGCATTTGTGGTGCTGCTGCTGCTGCATCACCATCAAGCATTGCAAAGCCTCTCTATCCTCCTACTCACTGCCATTTCCTTCCAACCTCTCTTTTCTCCTCCTTTTGTTTTCAGAAAAAAAGCAAATTGATTCTTCAAAAATCAGTTCAAGATACCGCAGGCTCAAAAGTATCATGTAGTTTACTGAATGTGGAAAGTGTGATAGATGATGATGCATGTGAATTAGTCAGTGGAGAGGAGCTTTATTTAGAGGATGGCGATGATAATGTTCATGCTTATCTTTTCAAGGCAGTAAAAAATAACAATGGAATTGGCCTATTGCTTCTTTCTGATGTTTATGGGTTTGAGGACTCCTCCACAAGAGATTTTGCATATCGGGTAGCTTGCAATGGTTTCAACGTTCTACTTCCAGACTTATTTCGCGGAAATCCATGGACAAAGGACCAGCCAAACACTCAGTTTGAACAATGGATTGCTGGACATAACCCTGAGAGGATTGCAAAAGACATTACCGCGTGGACAGAATGGCTGGCAGATGAATTGATGACTGAAGGAGTTTCCAGAAAACTTGGCATAATTGGTTTTTGCTTTGGAGGAGGCAAAGTGTTAGAGGTGCTAGCCCAAGACCAAGATGCTTGCTTTGGCACTGGAATCTCCTTTTATGGTACAAGGATAGATTCGCTTGTTGCTTCTGATGTAAAAGTTCCCGTCTTGTTTATTTTAGGGGACAATGACCCACTTTGCGCTGTAAGTGAAATAAAAAATATTCAGACTACAATTGATAGTGGTTCCGAAGTAGTGATATTCCCAGGTAGAGGTCATGGATTTGCCCACCGACCTGGATCTGTGGAAGAAGACAAGGACGCTGAACAAGCCTATGTAATTATGAGAGACTGGATACATGAACATTTGGTGTAA

Protein sequence

>Msa0469950

MSEVALALALGSSKVKMGLATARATVSICGAAAAASPSSIAKPLYPPTHCHFLPTSLFSSFCFQKKSKLILQKSVQDTAGSKVSCSLLNVESVIDDDACELVSGEELYLEDGDDNVHAYLFKAVKNNNGIGLLLLSDVYGFEDSSTRDFAYRVACNGFNVLLPDLFRGNPWTKDQPNTQFEQWIAGHNPERIAKDITAWTEWLADELMTEGVSRKLGIIGFCFGGGKVLEVLAQDQDACFGTGISFYGTRIDSLVASDVKVPVLFILGDNDPLCAVSEIKNIQTTIDSGSEVVIFPGRGHGFAHRPGSVEEDKDAEQAYVIMRDWIHEHLV*