AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1373390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373390 MtrunA17_Chr1g0213301 92.737 179 5 3 1 179 1 171 4.30e-116 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373390 AT2G34860.2 58.382 173 64 3 15 179 14 186 3.66e-63 193
Msa1373390 AT2G34860.1 58.382 173 64 3 15 179 14 186 3.66e-63 193

Find 69 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTGCTAATGCTGATTTC+TGG 0.190781 tig0019430:+94373 Msa1373390:three_prime_UTR
CGCCTGGAAACAACATTTAC+TGG 0.235547 tig0019430:-93574 None:intergenic
ACATACCTTCTTCTAAGAAT+TGG 0.272269 tig0019430:-94075 None:intergenic
CCAAGCAAAATTTAGAGTTC+TGG 0.281948 tig0019430:-94518 None:intergenic
CTTGTCTGCCCTGTTTGTTT+AGG 0.322236 tig0019430:+93966 Msa1373390:CDS
ACTGAATGTCCTAATTGTTA+TGG 0.323214 tig0019430:+93933 Msa1373390:CDS
CGGAATGGATTGCAATTTGC+AGG 0.323737 tig0019430:+93304 Msa1373390:exon
CAGTCACTGGCTTAATTAAC+TGG 0.333554 tig0019430:-94416 None:intergenic
CTGAGAAGACCTTTATTGTT+TGG 0.336791 tig0019430:-93999 None:intergenic
TTTCCTCGACCATAACAATT+AGG 0.345884 tig0019430:-93942 None:intergenic
TGCCCTGTTTGTTTAGGAAC+TGG 0.352275 tig0019430:+93972 Msa1373390:CDS
GGTTACTAGTTAGCACCTAT+TGG 0.353176 tig0019430:+94539 Msa1373390:three_prime_UTR
CTGCTTGATAAGATGTATAA+TGG 0.353896 tig0019430:+94041 Msa1373390:CDS
GAAAATGGAAAGCTCTTAAC+AGG 0.369385 tig0019430:+93883 Msa1373390:CDS
TCAAGCAGTTTCTTTGCATC+AGG 0.377519 tig0019430:-94026 None:intergenic
CATACCTTCTTCTAAGAATT+GGG 0.381922 tig0019430:-94074 None:intergenic
TCCCAGTAAATGTTGTTTCC+AGG 0.390370 tig0019430:+93572 Msa1373390:CDS
TGTGTGGTGGTACAGGAAAA+TGG 0.392406 tig0019430:+93868 Msa1373390:CDS
ACTGGTGTGCCAAACAATAA+AGG 0.405844 tig0019430:+93990 Msa1373390:CDS
ACACCAGTTCCTAAACAAAC+AGG 0.409014 tig0019430:-93975 None:intergenic
TACTTGGTAACTATCTATAT+AGG 0.419252 tig0019430:-94696 None:intergenic
GCTTATATATATATTTGGTC+TGG 0.419714 tig0019430:+94488 Msa1373390:three_prime_UTR
ATCACTCTCTTCTTCTCCAT+CGG 0.420712 tig0019430:+93284 Msa1373390:five_prime_UTR
ACAAAATATTGAAATCCAAT+AGG 0.425468 tig0019430:-94554 None:intergenic
TAAATGACTTTCAAAATGTC+AGG 0.443125 tig0019430:+94633 Msa1373390:three_prime_UTR
ATCCGCTTGACACATCTTTG+AGG 0.450787 tig0019430:-94765 None:intergenic
CGTGGAGAGCACACGACCTA+TGG 0.452594 tig0019430:+93215 None:intergenic
CCAGTGACTGCAATGGTAAT+CGG 0.455462 tig0019430:+94429 Msa1373390:three_prime_UTR
CCGATTACCATTGCAGTCAC+TGG 0.455630 tig0019430:-94429 None:intergenic
TGAACATATACATATTTACT+TGG 0.456697 tig0019430:-94712 None:intergenic
ACTTCCCAATTCTTAGAAGA+AGG 0.466180 tig0019430:+94070 Msa1373390:exon
AGTTGGAAGAGGAGGAAGAG+TGG 0.470888 tig0019430:-93430 None:intergenic
ACCGCTCTTGATAAACCTCC+AGG 0.498198 tig0019430:+93658 Msa1373390:CDS
CCACCACAATTTCTGCAACC+TGG 0.498937 tig0019430:-93676 None:intergenic
CTAGCAAGTATTGCTATGTA+AGG 0.500666 tig0019430:+94672 Msa1373390:three_prime_UTR
GTTTGTTTGATAAAAGAAGT+TGG 0.500841 tig0019430:-93353 None:intergenic
TCCACTCTTCCTCAAAATCA+AGG 0.504399 tig0019430:+93404 Msa1373390:CDS
TTGTGAGCACAACTGAATTG+AGG 0.504650 tig0019430:+94352 Msa1373390:three_prime_UTR
CAAACAATAAAGGTCTTCTC+AGG 0.512552 tig0019430:+94000 Msa1373390:CDS
GGTGATATGTGTGGTGGTAC+AGG 0.517437 tig0019430:+93861 Msa1373390:intron
CTGTGTATTCTAAGCTAGCT+AGG 0.523119 tig0019430:-94454 None:intergenic
TGCAGAAATTGTGGTGGAAG+TGG 0.524731 tig0019430:+93682 Msa1373390:CDS
TCTTCTAAGAATTGGGAAGT+AGG 0.526104 tig0019430:-94067 None:intergenic
TCTCTTCTTCTCCATCGGAA+TGG 0.530978 tig0019430:+93289 Msa1373390:exon
ACATACCTTGGAGTTGGAAG+AGG 0.537745 tig0019430:-93441 None:intergenic
TGATAAAAGAAGTTGGAGGA+AGG 0.545348 tig0019430:-93346 None:intergenic
GCCTGGAAACAACATTTACT+GGG 0.549950 tig0019430:-93573 None:intergenic
TGTCCTAATTGTTATGGTCG+AGG 0.554383 tig0019430:+93939 Msa1373390:CDS
CCTCCAGGTTGCAGAAATTG+TGG 0.558014 tig0019430:+93673 Msa1373390:CDS
ATACATACATACCTTGGAGT+TGG 0.560487 tig0019430:-93447 None:intergenic
AGAGCACACGACCTATGGAT+TGG 0.561400 tig0019430:+93220 Msa1373390:five_prime_UTR
ACATTTAAGACATTGACGCC+TGG 0.572047 tig0019430:-93590 None:intergenic
TTAACTGGTGGAGAAAATTG+TGG 0.575727 tig0019430:-94401 None:intergenic
TACCTTGGAGTTGGAAGAGG+AGG 0.582188 tig0019430:-93438 None:intergenic
AAATATCAACTCCAATCCAT+AGG 0.583319 tig0019430:-93231 None:intergenic
TTCCTCCTCTTCCAACTCCA+AGG 0.584619 tig0019430:+93436 Msa1373390:CDS
CAAATTGCAATCCATTCCGA+TGG 0.595484 tig0019430:-93300 None:intergenic
ACCTGGAGGTTTATCAAGAG+CGG 0.598366 tig0019430:-93659 None:intergenic
ATCCTCAAAGATGTGTCAAG+CGG 0.606936 tig0019430:+94763 Msa1373390:three_prime_UTR
CATTTAGGTGATATGTGTGG+TGG 0.616105 tig0019430:+93855 Msa1373390:intron
AATTAAGCCAGTGACTGCAA+TGG 0.621433 tig0019430:+94422 Msa1373390:three_prime_UTR
ACAATAAAGGTCTTCTCAGG+AGG 0.622506 tig0019430:+94003 Msa1373390:CDS
TCACTGGCTTAATTAACTGG+TGG 0.630791 tig0019430:-94413 None:intergenic
CCACAATTTCTGCAACCTGG+AGG 0.630868 tig0019430:-93673 None:intergenic
CCAGGTTGCAGAAATTGTGG+TGG 0.631837 tig0019430:+93676 Msa1373390:CDS
TTTCATTTAGGTGATATGTG+TGG 0.652582 tig0019430:+93852 Msa1373390:intron
CACCAGTTCCTAAACAAACA+GGG 0.654127 tig0019430:-93974 None:intergenic
TGTTTGATAAAAGAAGTTGG+AGG 0.669703 tig0019430:-93350 None:intergenic
GAAGTTGGAGGAAGGCATCG+AGG 0.706960 tig0019430:-93338 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTTGCATTAATTAAAAA+TGG - tig0019430:93628-93647 None:intergenic 15.0%
!! TAAGCTAAATAAAATATTGT+TGG + tig0019430:94180-94199 Msa1373390:intron 15.0%
!! AAGCTAAATAAAATATTGTT+GGG + tig0019430:94181-94200 Msa1373390:intron 15.0%
!!! GTTTTGCTTATATATATATT+TGG + tig0019430:94483-94502 Msa1373390:three_prime_UTR 15.0%
!! TTTGTTGCATTAATTAAAAA+TGG - tig0019430:93628-93647 None:intergenic 15.0%
!! TAAGCTAAATAAAATATTGT+TGG + tig0019430:94180-94199 Msa1373390:intron 15.0%
!! AAGCTAAATAAAATATTGTT+GGG + tig0019430:94181-94200 Msa1373390:intron 15.0%
!!! GTTTTGCTTATATATATATT+TGG + tig0019430:94483-94502 Msa1373390:three_prime_UTR 15.0%
!!! TACTACTTTTGATTTCATTT+AGG + tig0019430:93840-93859 Msa1373390:intron 20.0%
!! TAAATAAAATATTGTTGGGT+TGG + tig0019430:94185-94204 Msa1373390:intron 20.0%
!! AAATAAAATATTGTTGGGTT+GGG + tig0019430:94186-94205 Msa1373390:intron 20.0%
!! ACAAAATATTGAAATCCAAT+AGG - tig0019430:94557-94576 None:intergenic 20.0%
!! TGAACATATACATATTTACT+TGG - tig0019430:94715-94734 None:intergenic 20.0%
!!! TACTACTTTTGATTTCATTT+AGG + tig0019430:93840-93859 Msa1373390:intron 20.0%
!! TAAATAAAATATTGTTGGGT+TGG + tig0019430:94185-94204 Msa1373390:intron 20.0%
!! AAATAAAATATTGTTGGGTT+GGG + tig0019430:94186-94205 Msa1373390:intron 20.0%
!! ACAAAATATTGAAATCCAAT+AGG - tig0019430:94557-94576 None:intergenic 20.0%
!! TGAACATATACATATTTACT+TGG - tig0019430:94715-94734 None:intergenic 20.0%
! GTTTGTTTGATAAAAGAAGT+TGG - tig0019430:93356-93375 None:intergenic 25.0%
!! ACTTCTTTTATCAAACAAAC+AGG + tig0019430:93356-93375 Msa1373390:CDS 25.0%
! ATATCATATGATATGAATGC+AGG + tig0019430:93528-93547 Msa1373390:intron 25.0%
! ATGTATACTTTCTTCCTTAT+AGG + tig0019430:94094-94113 Msa1373390:intron 25.0%
! GCTTATATATATATTTGGTC+TGG + tig0019430:94488-94507 Msa1373390:three_prime_UTR 25.0%
!!! AATTTTGATCTTCGTGAATA+TGG - tig0019430:94614-94633 None:intergenic 25.0%
! TAAATGACTTTCAAAATGTC+AGG + tig0019430:94633-94652 Msa1373390:three_prime_UTR 25.0%
!! TACTTGGTAACTATCTATAT+AGG - tig0019430:94699-94718 None:intergenic 25.0%
! GTTTGTTTGATAAAAGAAGT+TGG - tig0019430:93356-93375 None:intergenic 25.0%
!! ACTTCTTTTATCAAACAAAC+AGG + tig0019430:93356-93375 Msa1373390:CDS 25.0%
! ATATCATATGATATGAATGC+AGG + tig0019430:93528-93547 Msa1373390:intron 25.0%
! ATGTATACTTTCTTCCTTAT+AGG + tig0019430:94094-94113 Msa1373390:intron 25.0%
! GCTTATATATATATTTGGTC+TGG + tig0019430:94488-94507 Msa1373390:three_prime_UTR 25.0%
!!! AATTTTGATCTTCGTGAATA+TGG - tig0019430:94614-94633 None:intergenic 25.0%
! TAAATGACTTTCAAAATGTC+AGG + tig0019430:94633-94652 Msa1373390:three_prime_UTR 25.0%
!! TACTTGGTAACTATCTATAT+AGG - tig0019430:94699-94718 None:intergenic 25.0%
AAATATCAACTCCAATCCAT+AGG - tig0019430:93234-93253 None:intergenic 30.0%
TGTTTGATAAAAGAAGTTGG+AGG - tig0019430:93353-93372 None:intergenic 30.0%
! CTTTTATCAAACAAACAGGA+AGG + tig0019430:93360-93379 Msa1373390:CDS 30.0%
ACATACATACATACATACCT+TGG - tig0019430:93456-93475 None:intergenic 30.0%
TGATTATGAGAAAAGAGAAG+AGG - tig0019430:93725-93744 None:intergenic 30.0%
TTTCATTTAGGTGATATGTG+TGG + tig0019430:93852-93871 Msa1373390:intron 30.0%
ACTGAATGTCCTAATTGTTA+TGG + tig0019430:93933-93952 Msa1373390:CDS 30.0%
CTGCTTGATAAGATGTATAA+TGG + tig0019430:94041-94060 Msa1373390:CDS 30.0%
! CATACCTTCTTCTAAGAATT+GGG - tig0019430:94077-94096 None:intergenic 30.0%
! ACATACCTTCTTCTAAGAAT+TGG - tig0019430:94078-94097 None:intergenic 30.0%
TCGCATTAACATTTGTTCTA+TGG - tig0019430:94143-94162 None:intergenic 30.0%
ATAGAACAAATGTTAATGCG+AGG + tig0019430:94142-94161 Msa1373390:intron 30.0%
! TAAAGCACTTGCTTTACTTA+TGG + tig0019430:94211-94230 Msa1373390:intron 30.0%
GCTTTACTTATGGAAATGTT+TGG + tig0019430:94221-94240 Msa1373390:intron 30.0%
AACTTAATGGAGTAGTATCA+GGG - tig0019430:94252-94271 None:intergenic 30.0%
TCAAGAAAACAGCAACTTAA+TGG - tig0019430:94265-94284 None:intergenic 30.0%
TACAGTACAGTGAATATAAC+AGG - tig0019430:94310-94329 None:intergenic 30.0%
AAATATCAACTCCAATCCAT+AGG - tig0019430:93234-93253 None:intergenic 30.0%
TGTTTGATAAAAGAAGTTGG+AGG - tig0019430:93353-93372 None:intergenic 30.0%
! CTTTTATCAAACAAACAGGA+AGG + tig0019430:93360-93379 Msa1373390:CDS 30.0%
ACATACATACATACATACCT+TGG - tig0019430:93456-93475 None:intergenic 30.0%
TGATTATGAGAAAAGAGAAG+AGG - tig0019430:93725-93744 None:intergenic 30.0%
TTTCATTTAGGTGATATGTG+TGG + tig0019430:93852-93871 Msa1373390:intron 30.0%
ACTGAATGTCCTAATTGTTA+TGG + tig0019430:93933-93952 Msa1373390:CDS 30.0%
CTGCTTGATAAGATGTATAA+TGG + tig0019430:94041-94060 Msa1373390:CDS 30.0%
! CATACCTTCTTCTAAGAATT+GGG - tig0019430:94077-94096 None:intergenic 30.0%
! ACATACCTTCTTCTAAGAAT+TGG - tig0019430:94078-94097 None:intergenic 30.0%
TCGCATTAACATTTGTTCTA+TGG - tig0019430:94143-94162 None:intergenic 30.0%
ATAGAACAAATGTTAATGCG+AGG + tig0019430:94142-94161 Msa1373390:intron 30.0%
! TAAAGCACTTGCTTTACTTA+TGG + tig0019430:94211-94230 Msa1373390:intron 30.0%
GCTTTACTTATGGAAATGTT+TGG + tig0019430:94221-94240 Msa1373390:intron 30.0%
AACTTAATGGAGTAGTATCA+GGG - tig0019430:94252-94271 None:intergenic 30.0%
TCAAGAAAACAGCAACTTAA+TGG - tig0019430:94265-94284 None:intergenic 30.0%
TACAGTACAGTGAATATAAC+AGG - tig0019430:94310-94329 None:intergenic 30.0%
TGATAAAAGAAGTTGGAGGA+AGG - tig0019430:93349-93368 None:intergenic 35.0%
ATACATACATACCTTGGAGT+TGG - tig0019430:93450-93469 None:intergenic 35.0%
GAAAATGGAAAGCTCTTAAC+AGG + tig0019430:93883-93902 Msa1373390:CDS 35.0%
TTTCCTCGACCATAACAATT+AGG - tig0019430:93945-93964 None:intergenic 35.0%
CTGAGAAGACCTTTATTGTT+TGG - tig0019430:94002-94021 None:intergenic 35.0%
CAAACAATAAAGGTCTTCTC+AGG + tig0019430:94000-94019 Msa1373390:CDS 35.0%
! TCTTCTAAGAATTGGGAAGT+AGG - tig0019430:94070-94089 None:intergenic 35.0%
ACTTCCCAATTCTTAGAAGA+AGG + tig0019430:94070-94089 Msa1373390:exon 35.0%
ACTTAATGGAGTAGTATCAG+GGG - tig0019430:94251-94270 None:intergenic 35.0%
CAACTTAATGGAGTAGTATC+AGG - tig0019430:94253-94272 None:intergenic 35.0%
TTAACTGGTGGAGAAAATTG+TGG - tig0019430:94404-94423 None:intergenic 35.0%
! CCAAGCAAAATTTAGAGTTC+TGG - tig0019430:94521-94540 None:intergenic 35.0%
! CCAGAACTCTAAATTTTGCT+TGG + tig0019430:94518-94537 Msa1373390:three_prime_UTR 35.0%
! CTAGCAAGTATTGCTATGTA+AGG + tig0019430:94672-94691 Msa1373390:three_prime_UTR 35.0%
TGATAAAAGAAGTTGGAGGA+AGG - tig0019430:93349-93368 None:intergenic 35.0%
ATACATACATACCTTGGAGT+TGG - tig0019430:93450-93469 None:intergenic 35.0%
GAAAATGGAAAGCTCTTAAC+AGG + tig0019430:93883-93902 Msa1373390:CDS 35.0%
TTTCCTCGACCATAACAATT+AGG - tig0019430:93945-93964 None:intergenic 35.0%
CTGAGAAGACCTTTATTGTT+TGG - tig0019430:94002-94021 None:intergenic 35.0%
CAAACAATAAAGGTCTTCTC+AGG + tig0019430:94000-94019 Msa1373390:CDS 35.0%
! TCTTCTAAGAATTGGGAAGT+AGG - tig0019430:94070-94089 None:intergenic 35.0%
ACTTCCCAATTCTTAGAAGA+AGG + tig0019430:94070-94089 Msa1373390:exon 35.0%
ACTTAATGGAGTAGTATCAG+GGG - tig0019430:94251-94270 None:intergenic 35.0%
CAACTTAATGGAGTAGTATC+AGG - tig0019430:94253-94272 None:intergenic 35.0%
TTAACTGGTGGAGAAAATTG+TGG - tig0019430:94404-94423 None:intergenic 35.0%
! CCAAGCAAAATTTAGAGTTC+TGG - tig0019430:94521-94540 None:intergenic 35.0%
! CCAGAACTCTAAATTTTGCT+TGG + tig0019430:94518-94537 Msa1373390:three_prime_UTR 35.0%
! CTAGCAAGTATTGCTATGTA+AGG + tig0019430:94672-94691 Msa1373390:three_prime_UTR 35.0%
ATCACTCTCTTCTTCTCCAT+CGG + tig0019430:93284-93303 Msa1373390:five_prime_UTR 40.0%
CAAATTGCAATCCATTCCGA+TGG - tig0019430:93303-93322 None:intergenic 40.0%
TCCACTCTTCCTCAAAATCA+AGG + tig0019430:93404-93423 Msa1373390:CDS 40.0%
!! TCCTTGATTTTGAGGAAGAG+TGG - tig0019430:93408-93427 None:intergenic 40.0%
GGAAGAAGAAGAAGAAGAAG+TGG + tig0019430:93549-93568 Msa1373390:intron 40.0%
!! TCCCAGTAAATGTTGTTTCC+AGG + tig0019430:93572-93591 Msa1373390:CDS 40.0%
GCCTGGAAACAACATTTACT+GGG - tig0019430:93576-93595 None:intergenic 40.0%
! ACATTTAAGACATTGACGCC+TGG - tig0019430:93593-93612 None:intergenic 40.0%
CATTTAGGTGATATGTGTGG+TGG + tig0019430:93855-93874 Msa1373390:intron 40.0%
TGTCCTAATTGTTATGGTCG+AGG + tig0019430:93939-93958 Msa1373390:CDS 40.0%
CACCAGTTCCTAAACAAACA+GGG - tig0019430:93977-93996 None:intergenic 40.0%
ACACCAGTTCCTAAACAAAC+AGG - tig0019430:93978-93997 None:intergenic 40.0%
ACTGGTGTGCCAAACAATAA+AGG + tig0019430:93990-94009 Msa1373390:CDS 40.0%
ACAATAAAGGTCTTCTCAGG+AGG + tig0019430:94003-94022 Msa1373390:CDS 40.0%
TCAAGCAGTTTCTTTGCATC+AGG - tig0019430:94029-94048 None:intergenic 40.0%
TTGTGAGCACAACTGAATTG+AGG + tig0019430:94352-94371 Msa1373390:three_prime_UTR 40.0%
!! TCACTGGCTTAATTAACTGG+TGG - tig0019430:94416-94435 None:intergenic 40.0%
!! CAGTCACTGGCTTAATTAAC+TGG - tig0019430:94419-94438 None:intergenic 40.0%
AATTAAGCCAGTGACTGCAA+TGG + tig0019430:94422-94441 Msa1373390:three_prime_UTR 40.0%
CTGTGTATTCTAAGCTAGCT+AGG - tig0019430:94457-94476 None:intergenic 40.0%
GGTTACTAGTTAGCACCTAT+TGG + tig0019430:94539-94558 Msa1373390:three_prime_UTR 40.0%
ATCCTCAAAGATGTGTCAAG+CGG + tig0019430:94763-94782 Msa1373390:three_prime_UTR 40.0%
ATCACTCTCTTCTTCTCCAT+CGG + tig0019430:93284-93303 Msa1373390:five_prime_UTR 40.0%
CAAATTGCAATCCATTCCGA+TGG - tig0019430:93303-93322 None:intergenic 40.0%
TCCACTCTTCCTCAAAATCA+AGG + tig0019430:93404-93423 Msa1373390:CDS 40.0%
!! TCCTTGATTTTGAGGAAGAG+TGG - tig0019430:93408-93427 None:intergenic 40.0%
GGAAGAAGAAGAAGAAGAAG+TGG + tig0019430:93549-93568 Msa1373390:intron 40.0%
!! TCCCAGTAAATGTTGTTTCC+AGG + tig0019430:93572-93591 Msa1373390:CDS 40.0%
GCCTGGAAACAACATTTACT+GGG - tig0019430:93576-93595 None:intergenic 40.0%
! ACATTTAAGACATTGACGCC+TGG - tig0019430:93593-93612 None:intergenic 40.0%
CATTTAGGTGATATGTGTGG+TGG + tig0019430:93855-93874 Msa1373390:intron 40.0%
TGTCCTAATTGTTATGGTCG+AGG + tig0019430:93939-93958 Msa1373390:CDS 40.0%
CACCAGTTCCTAAACAAACA+GGG - tig0019430:93977-93996 None:intergenic 40.0%
ACACCAGTTCCTAAACAAAC+AGG - tig0019430:93978-93997 None:intergenic 40.0%
ACTGGTGTGCCAAACAATAA+AGG + tig0019430:93990-94009 Msa1373390:CDS 40.0%
ACAATAAAGGTCTTCTCAGG+AGG + tig0019430:94003-94022 Msa1373390:CDS 40.0%
TCAAGCAGTTTCTTTGCATC+AGG - tig0019430:94029-94048 None:intergenic 40.0%
TTGTGAGCACAACTGAATTG+AGG + tig0019430:94352-94371 Msa1373390:three_prime_UTR 40.0%
!! TCACTGGCTTAATTAACTGG+TGG - tig0019430:94416-94435 None:intergenic 40.0%
!! CAGTCACTGGCTTAATTAAC+TGG - tig0019430:94419-94438 None:intergenic 40.0%
AATTAAGCCAGTGACTGCAA+TGG + tig0019430:94422-94441 Msa1373390:three_prime_UTR 40.0%
CTGTGTATTCTAAGCTAGCT+AGG - tig0019430:94457-94476 None:intergenic 40.0%
GGTTACTAGTTAGCACCTAT+TGG + tig0019430:94539-94558 Msa1373390:three_prime_UTR 40.0%
TCTCTTCTTCTCCATCGGAA+TGG + tig0019430:93289-93308 Msa1373390:exon 45.0%
!! CGGAATGGATTGCAATTTGC+AGG + tig0019430:93304-93323 Msa1373390:exon 45.0%
! GAGTGGTGTCCTTGATTTTG+AGG - tig0019430:93416-93435 None:intergenic 45.0%
ACATACCTTGGAGTTGGAAG+AGG - tig0019430:93444-93463 None:intergenic 45.0%
CGCCTGGAAACAACATTTAC+TGG - tig0019430:93577-93596 None:intergenic 45.0%
ACCTGGAGGTTTATCAAGAG+CGG - tig0019430:93662-93681 None:intergenic 45.0%
! TGCAGAAATTGTGGTGGAAG+TGG + tig0019430:93682-93701 Msa1373390:CDS 45.0%
TGTGTGGTGGTACAGGAAAA+TGG + tig0019430:93868-93887 Msa1373390:CDS 45.0%
CTTGTCTGCCCTGTTTGTTT+AGG + tig0019430:93966-93985 Msa1373390:CDS 45.0%
TGCCCTGTTTGTTTAGGAAC+TGG + tig0019430:93972-93991 Msa1373390:CDS 45.0%
!! ATGGCTACGACAAGTTGGTT+GGG - tig0019430:94124-94143 None:intergenic 45.0%
!! TATGGCTACGACAAGTTGGT+TGG - tig0019430:94125-94144 None:intergenic 45.0%
GTTCTATGGCTACGACAAGT+TGG - tig0019430:94129-94148 None:intergenic 45.0%
!! GGCTTGCTAATGCTGATTTC+TGG + tig0019430:94373-94392 Msa1373390:three_prime_UTR 45.0%
CCAGTGACTGCAATGGTAAT+CGG + tig0019430:94429-94448 Msa1373390:three_prime_UTR 45.0%
TCCTCAAAGATGTGTCAAGC+GGG + tig0019430:94764-94783 Msa1373390:three_prime_UTR 45.0%
TCTCTTCTTCTCCATCGGAA+TGG + tig0019430:93289-93308 Msa1373390:exon 45.0%
!! CGGAATGGATTGCAATTTGC+AGG + tig0019430:93304-93323 Msa1373390:exon 45.0%
! GAGTGGTGTCCTTGATTTTG+AGG - tig0019430:93416-93435 None:intergenic 45.0%
ACATACCTTGGAGTTGGAAG+AGG - tig0019430:93444-93463 None:intergenic 45.0%
CGCCTGGAAACAACATTTAC+TGG - tig0019430:93577-93596 None:intergenic 45.0%
ACCTGGAGGTTTATCAAGAG+CGG - tig0019430:93662-93681 None:intergenic 45.0%
! TGCAGAAATTGTGGTGGAAG+TGG + tig0019430:93682-93701 Msa1373390:CDS 45.0%
TGTGTGGTGGTACAGGAAAA+TGG + tig0019430:93868-93887 Msa1373390:CDS 45.0%
CTTGTCTGCCCTGTTTGTTT+AGG + tig0019430:93966-93985 Msa1373390:CDS 45.0%
TGCCCTGTTTGTTTAGGAAC+TGG + tig0019430:93972-93991 Msa1373390:CDS 45.0%
!! ATGGCTACGACAAGTTGGTT+GGG - tig0019430:94124-94143 None:intergenic 45.0%
!! TATGGCTACGACAAGTTGGT+TGG - tig0019430:94125-94144 None:intergenic 45.0%
GTTCTATGGCTACGACAAGT+TGG - tig0019430:94129-94148 None:intergenic 45.0%
!! GGCTTGCTAATGCTGATTTC+TGG + tig0019430:94373-94392 Msa1373390:three_prime_UTR 45.0%
CCAGTGACTGCAATGGTAAT+CGG + tig0019430:94429-94448 Msa1373390:three_prime_UTR 45.0%
AGAGCACACGACCTATGGAT+TGG + tig0019430:93220-93239 Msa1373390:five_prime_UTR 50.0%
AGTTGGAAGAGGAGGAAGAG+TGG - tig0019430:93433-93452 None:intergenic 50.0%
TTCCTCCTCTTCCAACTCCA+AGG + tig0019430:93436-93455 Msa1373390:CDS 50.0%
TACCTTGGAGTTGGAAGAGG+AGG - tig0019430:93441-93460 None:intergenic 50.0%
ACCGCTCTTGATAAACCTCC+AGG + tig0019430:93658-93677 Msa1373390:CDS 50.0%
CCACAATTTCTGCAACCTGG+AGG - tig0019430:93676-93695 None:intergenic 50.0%
CCTCCAGGTTGCAGAAATTG+TGG + tig0019430:93673-93692 Msa1373390:CDS 50.0%
CCACCACAATTTCTGCAACC+TGG - tig0019430:93679-93698 None:intergenic 50.0%
CCAGGTTGCAGAAATTGTGG+TGG + tig0019430:93676-93695 Msa1373390:CDS 50.0%
GGTGATATGTGTGGTGGTAC+AGG + tig0019430:93861-93880 Msa1373390:intron 50.0%
!! CTACGACAAGTTGGTTGGGT+CGG - tig0019430:94120-94139 None:intergenic 50.0%
CCGATTACCATTGCAGTCAC+TGG - tig0019430:94432-94451 None:intergenic 50.0%
AGAGCACACGACCTATGGAT+TGG + tig0019430:93220-93239 Msa1373390:five_prime_UTR 50.0%
AGTTGGAAGAGGAGGAAGAG+TGG - tig0019430:93433-93452 None:intergenic 50.0%
TTCCTCCTCTTCCAACTCCA+AGG + tig0019430:93436-93455 Msa1373390:CDS 50.0%
TACCTTGGAGTTGGAAGAGG+AGG - tig0019430:93441-93460 None:intergenic 50.0%
ACCGCTCTTGATAAACCTCC+AGG + tig0019430:93658-93677 Msa1373390:CDS 50.0%
CCACAATTTCTGCAACCTGG+AGG - tig0019430:93676-93695 None:intergenic 50.0%
CCTCCAGGTTGCAGAAATTG+TGG + tig0019430:93673-93692 Msa1373390:CDS 50.0%
CCACCACAATTTCTGCAACC+TGG - tig0019430:93679-93698 None:intergenic 50.0%
CCAGGTTGCAGAAATTGTGG+TGG + tig0019430:93676-93695 Msa1373390:CDS 50.0%
GGTGATATGTGTGGTGGTAC+AGG + tig0019430:93861-93880 Msa1373390:intron 50.0%
!! CTACGACAAGTTGGTTGGGT+CGG - tig0019430:94120-94139 None:intergenic 50.0%
CCGATTACCATTGCAGTCAC+TGG - tig0019430:94432-94451 None:intergenic 50.0%
!! GAAGTTGGAGGAAGGCATCG+AGG - tig0019430:93341-93360 None:intergenic 55.0%
GTTGGTTGGGTCGGCCTATA+AGG - tig0019430:94111-94130 None:intergenic 55.0%
!! GAAGTTGGAGGAAGGCATCG+AGG - tig0019430:93341-93360 None:intergenic 55.0%
GTTGGTTGGGTCGGCCTATA+AGG - tig0019430:94111-94130 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0019430 gene 93216 94785 93216 ID=Msa1373390;Name=Msa1373390
tig0019430 mRNA 93216 94785 93216 ID=Msa1373390-mRNA-1;Parent=Msa1373390;Name=Msa1373390-mRNA-1;_AED=0.10;_eAED=0.10;_QI=92|1|1|1|0.66|0.5|4|447|179
tig0019430 exon 93216 93457 93216 ID=Msa1373390-mRNA-1:exon:3235;Parent=Msa1373390-mRNA-1
tig0019430 exon 93550 93715 93550 ID=Msa1373390-mRNA-1:exon:3236;Parent=Msa1373390-mRNA-1
tig0019430 exon 93862 94091 93862 ID=Msa1373390-mRNA-1:exon:3237;Parent=Msa1373390-mRNA-1
tig0019430 exon 94345 94785 94345 ID=Msa1373390-mRNA-1:exon:3238;Parent=Msa1373390-mRNA-1
tig0019430 five_prime_UTR 93216 93307 93216 ID=Msa1373390-mRNA-1:five_prime_utr;Parent=Msa1373390-mRNA-1
tig0019430 CDS 93308 93457 93308 ID=Msa1373390-mRNA-1:cds;Parent=Msa1373390-mRNA-1
tig0019430 CDS 93550 93715 93550 ID=Msa1373390-mRNA-1:cds;Parent=Msa1373390-mRNA-1
tig0019430 CDS 93862 94085 93862 ID=Msa1373390-mRNA-1:cds;Parent=Msa1373390-mRNA-1
tig0019430 three_prime_UTR 94086 94091 94086 ID=Msa1373390-mRNA-1:three_prime_utr;Parent=Msa1373390-mRNA-1
tig0019430 three_prime_UTR 94345 94785 94345 ID=Msa1373390-mRNA-1:three_prime_utr;Parent=Msa1373390-mRNA-1
Gene Sequence

>Msa1373390

ATGGATTGCAATTTGCAGGCGTCTGTTATTCCTCGATGCCTTCCTCCAACTTCTTTTATCAAACAAACAGGAAGGACGCGTTCTTTTATTGTTAAATCCACTCTTCCTCAAAATCAAGGACACCACTCTTCCTCCTCTTCCAACTCCAAGGAAGAAGAAGAAGAAGAAGTGGTCCCAGTAAATGTTGTTTCCAGGCGTCAATGTCTTAAATGTTTATGTTCAACTCCATTTTTAATTAATGCAACAAACGCAGCAGCAACCGCTCTTGATAAACCTCCAGGTTGCAGAAATTGTGGTGGAAGTGGTAACATCATCTGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTTAACAGGAAGCGAGCACAAGATGTTTATGAGTTTACTGAATGTCCTAATTGTTATGGTCGAGGAAAGCTTGTCTGCCCTGTTTGTTTAGGAACTGGTGTGCCAAACAATAAAGGTCTTCTCAGGAGGCCTGATGCAAAGAAACTGCTTGATAAGATGTATAATGGACGCCTACTTCCCAATTCTTAG

Protein sequence

>Msa1373390

MDCNLQASVIPRCLPPTSFIKQTGRTRSFIVKSTLPQNQGHHSSSSSNSKEEEEEEVVPVNVVSRRQCLKCLCSTPFLINATNAAATALDKPPGCRNCGGSGNIICDMCGGTGKWKALNRKRAQDVYEFTECPNCYGRGKLVCPVCLGTGVPNNKGLLRRPDAKKLLDKMYNGRLLPNS*