Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294940 | sp|Q9FN50|CPP1_ARATH | 38.222 | 225 | 127 | 5 | 61 | 281 | 41 | 257 | 3.21e-43 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294940 | G7LD00 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 561 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001540 | Msa1294940 | 0.824069 | 9.855389e-54 | -8.615850e-47 |
| Msa0026110 | Msa1294940 | 0.814482 | 1.506488e-51 | -8.615850e-47 |
| Msa0037300 | Msa1294940 | 0.802710 | 4.930030e-49 | -8.615850e-47 |
| Msa0073220 | Msa1294940 | 0.807623 | 4.617716e-50 | -8.615850e-47 |
| Msa0092180 | Msa1294940 | 0.806022 | 1.006356e-49 | -8.615850e-47 |
| Msa0112290 | Msa1294940 | 0.813996 | 1.929048e-51 | -8.615850e-47 |
| Msa0112340 | Msa1294940 | 0.804855 | 1.768171e-49 | -8.615850e-47 |
| Msa0620020 | Msa1294940 | 0.805841 | 1.098841e-49 | -8.615850e-47 |
| Msa0624700 | Msa1294940 | 0.870005 | 2.022439e-66 | -8.615850e-47 |
| Msa0645040 | Msa1294940 | 0.820617 | 6.240458e-53 | -8.615850e-47 |
| Msa0682460 | Msa1294940 | 0.831034 | 2.098402e-55 | -8.615850e-47 |
| Msa0684520 | Msa1294940 | 0.818888 | 1.549779e-52 | -8.615850e-47 |
| Msa0705250 | Msa1294940 | 0.828264 | 9.903891e-55 | -8.615850e-47 |
| Msa0706450 | Msa1294940 | 0.807293 | 5.425350e-50 | -8.615850e-47 |
| Msa0707290 | Msa1294940 | 0.811331 | 7.386243e-51 | -8.615850e-47 |
| Msa0738950 | Msa1294940 | 0.820664 | 6.087686e-53 | -8.615850e-47 |
| Msa0752290 | Msa1294940 | 0.802670 | 5.023955e-49 | -8.615850e-47 |
| Msa0773080 | Msa1294940 | 0.802422 | 5.654113e-49 | -8.615850e-47 |
| Msa0790180 | Msa1294940 | 0.820865 | 5.473645e-53 | -8.615850e-47 |
| Msa0790380 | Msa1294940 | 0.814479 | 1.508422e-51 | -8.615850e-47 |
| Msa0832270 | Msa1294940 | 0.808340 | 3.250390e-50 | -8.615850e-47 |
| Msa0131440 | Msa1294940 | 0.859830 | 3.152504e-63 | -8.615850e-47 |
| Msa0166570 | Msa1294940 | 0.803175 | 3.952512e-49 | -8.615850e-47 |
| Msa0175280 | Msa1294940 | 0.804613 | 1.985920e-49 | -8.615850e-47 |
| Msa0182610 | Msa1294940 | 0.801478 | 8.835209e-49 | -8.615850e-47 |
| Msa0188670 | Msa1294940 | 0.811155 | 8.066304e-51 | -8.615850e-47 |
| Msa0216390 | Msa1294940 | 0.801901 | 7.234242e-49 | -8.615850e-47 |
| Msa1235140 | Msa1294940 | 0.803376 | 3.590465e-49 | -8.615850e-47 |
| Msa1237750 | Msa1294940 | 0.827815 | 1.270346e-54 | -8.615850e-47 |
| Msa1250500 | Msa1294940 | 0.803276 | 3.765378e-49 | -8.615850e-47 |
| Msa1258940 | Msa1294940 | 0.829908 | 3.956274e-55 | -8.615850e-47 |
| Msa1267560 | Msa1294940 | 0.819700 | 1.012072e-52 | -8.615850e-47 |
| Msa1272200 | Msa1294940 | 0.855535 | 5.910086e-62 | -8.615850e-47 |
| Msa1294940 | Msa1297500 | 0.808697 | 2.726321e-50 | -8.615850e-47 |
| Msa1294940 | Msa1305650 | 0.805068 | 1.595966e-49 | -8.615850e-47 |
| Msa1294940 | Msa1316390 | 0.806552 | 7.781026e-50 | -8.615850e-47 |
| Msa1294940 | Msa1318180 | 0.809333 | 1.993175e-50 | -8.615850e-47 |
| Msa1294940 | Msa1375120 | 0.803623 | 3.191508e-49 | -8.615850e-47 |
| Msa1294940 | Msa1375600 | 0.826866 | 2.144031e-54 | -8.615850e-47 |
| Msa1294940 | Msa1376560 | 0.814508 | 1.486329e-51 | -8.615850e-47 |
| Msa1294940 | Msa1376680 | 0.809132 | 2.200968e-50 | -8.615850e-47 |
| Msa1294940 | Msa1388610 | 0.823411 | 1.405133e-53 | -8.615850e-47 |
| Msa1294940 | Msa1391430 | 0.825236 | 5.233819e-54 | -8.615850e-47 |
| Msa1294940 | Msa1398740 | 0.804589 | 2.009098e-49 | -8.615850e-47 |
| Msa1294940 | Msa1400830 | 0.800198 | 1.612442e-48 | -8.615850e-47 |
| Msa1294940 | Msa1403590 | 0.809151 | 2.180551e-50 | -8.615850e-47 |
| Msa1294940 | Msa1411690 | 0.827970 | 1.165929e-54 | -8.615850e-47 |
| Msa1294940 | Msa1412750 | 0.809170 | 2.160320e-50 | -8.615850e-47 |
| Msa1294940 | Msa1418600 | 0.824619 | 7.315828e-54 | -8.615850e-47 |
| Msa1294940 | Msa1426880 | 0.804615 | 1.983994e-49 | -8.615850e-47 |
| Msa1294940 | Msa1437320 | 0.804639 | 1.961081e-49 | -8.615850e-47 |
| Msa1294940 | Msa1443280 | 0.813840 | 2.088192e-51 | -8.615850e-47 |
| Msa1294940 | Msa1456390 | 0.819576 | 1.079913e-52 | -8.615850e-47 |
| Msa0379450 | Msa1294940 | 0.834258 | 3.325763e-56 | -8.615850e-47 |
| Msa0380440 | Msa1294940 | 0.811717 | 6.087003e-51 | -8.615850e-47 |
| Msa0383110 | Msa1294940 | 0.800678 | 1.287454e-48 | -8.615850e-47 |
| Msa0415860 | Msa1294940 | 0.807983 | 3.872037e-50 | -8.615850e-47 |
| Msa0423820 | Msa1294940 | 0.836186 | 1.084393e-56 | -8.615850e-47 |
| Msa0455200 | Msa1294940 | 0.801384 | 9.237799e-49 | -8.615850e-47 |
| Msa1013560 | Msa1294940 | 0.818768 | 1.649864e-52 | -8.615850e-47 |
| Msa1032410 | Msa1294940 | 0.816027 | 6.831735e-52 | -8.615850e-47 |
| Msa1074730 | Msa1294940 | 0.836880 | 7.218942e-57 | -8.615850e-47 |
| Msa0256590 | Msa1294940 | 0.807667 | 4.519244e-50 | -8.615850e-47 |
| Msa0258410 | Msa1294940 | 0.810118 | 1.351221e-50 | -8.615850e-47 |
| Msa0270230 | Msa1294940 | 0.817321 | 3.504130e-52 | -8.615850e-47 |
| Msa0273550 | Msa1294940 | 0.834960 | 2.214744e-56 | -8.615850e-47 |
| Msa0294170 | Msa1294940 | 0.819569 | 1.084210e-52 | -8.615850e-47 |
| Msa0295730 | Msa1294940 | 0.806806 | 6.879841e-50 | -8.615850e-47 |
| Msa0296000 | Msa1294940 | 0.803442 | 3.479178e-49 | -8.615850e-47 |
| Msa0307820 | Msa1294940 | 0.823899 | 1.080340e-53 | -8.615850e-47 |
| Msa0308430 | Msa1294940 | 0.800860 | 1.182270e-48 | -8.615850e-47 |
| Msa0329910 | Msa1294940 | 0.803926 | 2.760255e-49 | -8.615850e-47 |
| Msa0335740 | Msa1294940 | 0.828141 | 1.060303e-54 | -8.615850e-47 |
| Msa1110350 | Msa1294940 | 0.823447 | 1.378547e-53 | -8.615850e-47 |
| Msa1118390 | Msa1294940 | 0.812433 | 4.250499e-51 | -8.615850e-47 |
| Msa1126310 | Msa1294940 | 0.802847 | 4.618669e-49 | -8.615850e-47 |
| Msa1154020 | Msa1294940 | 0.823623 | 1.253645e-53 | -8.615850e-47 |
| Msa1177960 | Msa1294940 | 0.842606 | 2.333877e-58 | -8.615850e-47 |
| Msa1181020 | Msa1294940 | 0.810574 | 1.077089e-50 | -8.615850e-47 |
| Msa1202170 | Msa1294940 | 0.983263 | 2.873747e-157 | -8.615850e-47 |
| Msa1208630 | Msa1294940 | 0.841699 | 4.055349e-58 | -8.615850e-47 |
| Msa1208750 | Msa1294940 | 0.812136 | 4.935405e-51 | -8.615850e-47 |
| Msa1220680 | Msa1294940 | 0.805356 | 1.389041e-49 | -8.615850e-47 |
| Msa0510510 | Msa1294940 | 0.810181 | 1.309646e-50 | -8.615850e-47 |
| Msa0510540 | Msa1294940 | 0.807405 | 5.137071e-50 | -8.615850e-47 |
| Msa0515730 | Msa1294940 | 0.870350 | 1.559208e-66 | -8.615850e-47 |
| Msa0583180 | Msa1294940 | 0.849651 | 2.820029e-60 | -8.615850e-47 |
| Msa0879820 | Msa1294940 | 0.818935 | 1.511447e-52 | -8.615850e-47 |
| Msa0969050 | Msa1294940 | 0.803594 | 3.235816e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294940 | MtrunA17_Chr8g0372221 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 561 |
| Msa1294940 | MtrunA17_Chr4g0062111 | 39.196 | 199 | 117 | 3 | 85 | 281 | 54 | 250 | 2.11e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1294940 | AT3G51140.1 | 63.241 | 253 | 86 | 4 | 30 | 281 | 31 | 277 | 1.48e-112 | 326 |
| Msa1294940 | AT3G51140.2 | 60.099 | 203 | 76 | 3 | 30 | 231 | 31 | 229 | 2.24e-82 | 248 |
| Msa1294940 | AT5G23040.2 | 38.222 | 225 | 127 | 5 | 61 | 281 | 41 | 257 | 3.27e-44 | 151 |
| Msa1294940 | AT5G23040.1 | 38.222 | 225 | 127 | 5 | 61 | 281 | 41 | 257 | 3.27e-44 | 151 |
Find 81 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATGAGCATACATATTT+TGG | 0.063893 | 8_3:-52874693 | Msa1294940:three_prime_UTR |
| TATATAACAATGATTGTATC+TGG | 0.187129 | 8_3:-52877671 | Msa1294940:exon |
| CGAGGCAACGAGGAGGTAAT+TGG | 0.227784 | 8_3:+52877621 | None:intergenic |
| AGGATAAGAGCTTTGCTTTA+TGG | 0.229239 | 8_3:-52875570 | Msa1294940:CDS |
| ATGTCCAATGTACGTAAATT+TGG | 0.262656 | 8_3:+52874640 | None:intergenic |
| GCCCTTGGTCCCTTGATTAT+AGG | 0.265287 | 8_3:+52874915 | None:intergenic |
| GCCTCGAATCACGCCGTGTT+CGG | 0.266223 | 8_3:-52877604 | Msa1294940:CDS |
| GGATAAGAGCTTTGCTTTAT+GGG | 0.286176 | 8_3:-52875569 | Msa1294940:intron |
| CTTATTCCAAGTCGTTTATA+CGG | 0.293016 | 8_3:+52875963 | None:intergenic |
| GTCATACTCATGTCAAAATA+AGG | 0.304751 | 8_3:+52874615 | None:intergenic |
| GTCAATAACTATGATGTTAT+AGG | 0.321475 | 8_3:+52874575 | None:intergenic |
| GGATCGCTCACATTAATTCT+TGG | 0.335746 | 8_3:+52875984 | None:intergenic |
| TTGAGAATGGAGAGGGAAGA+AGG | 0.341657 | 8_3:+52878615 | None:intergenic |
| AGATTGAGGAAGCAGGGTTT+TGG | 0.348685 | 8_3:-52878664 | None:intergenic |
| CGAGGAAGGGCCAACACTTC+AGG | 0.348949 | 8_3:-52875646 | Msa1294940:CDS |
| CCTCGAATCACGCCGTGTTC+GGG | 0.353082 | 8_3:-52877603 | Msa1294940:CDS |
| GCCCTGCATATTTCTGAATC+AGG | 0.356185 | 8_3:+52875898 | None:intergenic |
| GAGGCAACGAGGAGGTAATT+GGG | 0.389953 | 8_3:+52877622 | None:intergenic |
| GCTGTTGGGAACCTTCTTGA+TGG | 0.390968 | 8_3:-52874958 | Msa1294940:CDS |
| CAATCAATCCCGATTCGTTC+AGG | 0.407889 | 8_3:-52875766 | Msa1294940:CDS |
| CTCTGACAGCCTGAACGAAT+CGG | 0.408522 | 8_3:+52875757 | None:intergenic |
| GATCGCTCACATTAATTCTT+GGG | 0.413368 | 8_3:+52875985 | None:intergenic |
| AGGAGGAAAGTGTTGTTGTT+GGG | 0.426747 | 8_3:+52878563 | None:intergenic |
| TGAGAATGGAGAGGGAAGAA+GGG | 0.429302 | 8_3:+52878616 | None:intergenic |
| CAAGGGACCAAGGGCATTTG+AGG | 0.437968 | 8_3:-52874907 | Msa1294940:CDS |
| ATAGGCAACAAGAATAGCTT+TGG | 0.445585 | 8_3:+52874593 | None:intergenic |
| AAGGAGGAAAGTGTTGTTGT+TGG | 0.446938 | 8_3:+52878562 | None:intergenic |
| CTTTAGCCTTCATATAAGAT+AGG | 0.451503 | 8_3:+52874839 | None:intergenic |
| TCCTCCCATTCCTATAATCA+AGG | 0.453208 | 8_3:-52874925 | Msa1294940:CDS |
| AGTGCTATGGGTGCTTCATT+TGG | 0.458480 | 8_3:-52877355 | Msa1294940:CDS |
| GCTTCCAAATTTACGTACAT+TGG | 0.461390 | 8_3:-52874644 | Msa1294940:three_prime_UTR |
| TCTCCATTCTCAAAATCATC+AGG | 0.467461 | 8_3:-52878605 | Msa1294940:five_prime_UTR |
| TGGTCCCTTGATTATAGGAA+TGG | 0.471280 | 8_3:+52874920 | None:intergenic |
| TCTGACAGCCTGAACGAATC+GGG | 0.472429 | 8_3:+52875758 | None:intergenic |
| CTGAAGTGTTGGCCCTTCCT+CGG | 0.475487 | 8_3:+52875647 | None:intergenic |
| CATCGACCTATCTTATATGA+AGG | 0.484004 | 8_3:-52874845 | Msa1294940:exon |
| AGTGTTGGCCCTTCCTCGGT+TGG | 0.487936 | 8_3:+52875651 | None:intergenic |
| TCAATTGGTCAGAAGTGCTA+TGG | 0.489625 | 8_3:-52877368 | Msa1294940:CDS |
| TTCCTGATTCAGAAATATGC+AGG | 0.491805 | 8_3:-52875900 | Msa1294940:CDS |
| TGATAGACGACAAGTTCAAT+TGG | 0.501549 | 8_3:-52877383 | Msa1294940:CDS |
| GGTCCCTTGATTATAGGAAT+GGG | 0.504384 | 8_3:+52874921 | None:intergenic |
| TATATGATCGGCTGAAGAGC+AGG | 0.515820 | 8_3:-52875590 | Msa1294940:CDS |
| ATATAACAATGATTGTATCT+GGG | 0.516139 | 8_3:-52877670 | Msa1294940:exon |
| TGGGCATACCTTTCCACACT+GGG | 0.516470 | 8_3:+52877533 | None:intergenic |
| GACTCAATTGAATCTACACT+TGG | 0.523228 | 8_3:+52875870 | None:intergenic |
| TTTATAATGAATATAGTGGA+TGG | 0.536659 | 8_3:+52875720 | None:intergenic |
| GATATTGCAACCTGAAGTGT+TGG | 0.546273 | 8_3:+52875636 | None:intergenic |
| CAAATCCCGATTCAACAAAA+CGG | 0.547555 | 8_3:+52874737 | None:intergenic |
| GTTCTCTTTCCAACCGAGGA+AGG | 0.550887 | 8_3:-52875660 | Msa1294940:CDS |
| TCCTATAATCAAGGGACCAA+GGG | 0.560682 | 8_3:-52874916 | Msa1294940:CDS |
| GTGATCACCTCAAATGCCCT+TGG | 0.562552 | 8_3:+52874900 | None:intergenic |
| AGGCAACGAGGAGGTAATTG+GGG | 0.569451 | 8_3:+52877623 | None:intergenic |
| AGGGATAAACACTTTCCAAA+GGG | 0.569755 | 8_3:+52878635 | None:intergenic |
| CAATTGGTCAGAAGTGCTAT+GGG | 0.571474 | 8_3:-52877367 | Msa1294940:CDS |
| CAACGTATTTCGTATATGAT+CGG | 0.574288 | 8_3:-52875602 | Msa1294940:CDS |
| AGCGATCCGTATAAACGACT+TGG | 0.578474 | 8_3:-52875969 | Msa1294940:CDS |
| TTCTCTTTCCAACCGAGGAA+GGG | 0.587448 | 8_3:-52875659 | Msa1294940:CDS |
| CCTCCCATTCCTATAATCAA+GGG | 0.591184 | 8_3:-52874924 | Msa1294940:CDS |
| TTGGGCATACCTTTCCACAC+TGG | 0.594896 | 8_3:+52877532 | None:intergenic |
| CCCTTGATTATAGGAATGGG+AGG | 0.596769 | 8_3:+52874924 | None:intergenic |
| TTCCTATAATCAAGGGACCA+AGG | 0.602791 | 8_3:-52874917 | Msa1294940:CDS |
| AAGAAGAAATTCAAGCAGCT+AGG | 0.603879 | 8_3:-52875926 | Msa1294940:CDS |
| AAGTGTAGATTCAATTGAGT+CGG | 0.607184 | 8_3:-52875868 | Msa1294940:CDS |
| TAAACGACTTGGAATAAGCA+AGG | 0.615337 | 8_3:-52875958 | Msa1294940:CDS |
| AAGGGATAAACACTTTCCAA+AGG | 0.617286 | 8_3:+52878634 | None:intergenic |
| AATTACTGACACCATCAAGA+AGG | 0.623704 | 8_3:+52874947 | None:intergenic |
| TCTCAATCTGAATGCCGCGG+CGG | 0.636482 | 8_3:-52874809 | Msa1294940:three_prime_UTR |
| GACCGTTCTCTTTCCAACCG+AGG | 0.637405 | 8_3:-52875664 | Msa1294940:CDS |
| AGAATAGAGAACACAAGTTG+AGG | 0.637460 | 8_3:+52877736 | None:intergenic |
| TCCTGATTCAGAAATATGCA+GGG | 0.647834 | 8_3:-52875899 | Msa1294940:CDS |
| AAGGACAGCGTTTCCCAGTG+TGG | 0.653221 | 8_3:-52877546 | Msa1294940:CDS |
| TTCCTCGGTTGGAAAGAGAA+CGG | 0.656823 | 8_3:+52875662 | None:intergenic |
| GATATGTCAAATGATTCTGC+TGG | 0.657645 | 8_3:-52877331 | Msa1294940:intron |
| GTATCTCAATCTGAATGCCG+CGG | 0.659897 | 8_3:-52874812 | Msa1294940:three_prime_UTR |
| TGGCTGGTAAATGTATACAA+AGG | 0.664469 | 8_3:-52877565 | Msa1294940:CDS |
| AAAATGACATGACCCGAACA+CGG | 0.665683 | 8_3:+52877591 | None:intergenic |
| ATGATTGTATCTGGGTTGAG+TGG | 0.684151 | 8_3:-52877662 | Msa1294940:CDS |
| GGCAACGAGGAGGTAATTGG+GGG | 0.687219 | 8_3:+52877624 | None:intergenic |
| CGGCGTGATTCGAGGCAACG+AGG | 0.707572 | 8_3:+52877611 | None:intergenic |
| CGTGATTCGAGGCAACGAGG+AGG | 0.732059 | 8_3:+52877614 | None:intergenic |
| TCTTCTGCTAAAATCCGCCG+CGG | 0.754859 | 8_3:+52874795 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTATAGAATGAATT+TGG | - | chr8_3:52874848-52874867 | Msa1294940:CDS | 10.0% |
| !!! | TATTTTTATAGAATGAATTT+GGG | - | chr8_3:52874849-52874868 | Msa1294940:CDS | 10.0% |
| !!! | TTGTTATTTTTATATATTTG+AGG | - | chr8_3:52875244-52875263 | Msa1294940:intron | 10.0% |
| !! | ATATTTCATGATACATAAAA+TGG | - | chr8_3:52875855-52875874 | Msa1294940:CDS | 15.0% |
| !!! | AGTTTTTATAATGAATATAG+TGG | + | chr8_3:52877419-52877438 | None:intergenic | 15.0% |
| !!! | AAAAAAAATAGATTTTGAGT+TGG | - | chr8_3:52877723-52877742 | Msa1294940:five_prime_UTR | 15.0% |
| !!! | TCTATTTTTTTCTAAACATA+AGG | + | chr8_3:52877861-52877880 | None:intergenic | 15.0% |
| !!! | GTTTAGAAAAAAATAGATTT+TGG | - | chr8_3:52877864-52877883 | Msa1294940:intron | 15.0% |
| !! | TTTAAAAAATCCAAAACAAA+CGG | - | chr8_3:52878017-52878036 | Msa1294940:intron | 15.0% |
| !!! | TGATAACATATGTTTTATTA+TGG | - | chr8_3:52878260-52878279 | Msa1294940:intron | 15.0% |
| !!! | GATAACATATGTTTTATTAT+GGG | - | chr8_3:52878261-52878280 | Msa1294940:intron | 15.0% |
| !! | TATTTATCATCATTTATACG+AGG | - | chr8_3:52874739-52874758 | Msa1294940:three_prime_UTR | 20.0% |
| !! | TCATTCTATAAAAATAAGAG+CGG | + | chr8_3:52874845-52874864 | None:intergenic | 20.0% |
| !!! | TTTTGTTAAGATTTTCACAT+TGG | - | chr8_3:52875051-52875070 | Msa1294940:intron | 20.0% |
| !! | ATTGTTATATAAAAATCTCC+AGG | + | chr8_3:52875452-52875471 | None:intergenic | 20.0% |
| !! | TATATAACAATGATTGTATC+TGG | - | chr8_3:52875461-52875480 | Msa1294940:intron | 20.0% |
| !! | ATATAACAATGATTGTATCT+GGG | - | chr8_3:52875462-52875481 | Msa1294940:intron | 20.0% |
| !! | TCAAAAAGTAATGATTCATT+GGG | + | chr8_3:52875621-52875640 | None:intergenic | 20.0% |
| !! | TTCAAAAAGTAATGATTCAT+TGG | + | chr8_3:52875622-52875641 | None:intergenic | 20.0% |
| !!! | ATTATTGTAGAAGAAAGTAT+AGG | - | chr8_3:52876135-52876154 | Msa1294940:intron | 20.0% |
| !! | AGTAAATCTATTGATATGAA+AGG | + | chr8_3:52876373-52876392 | None:intergenic | 20.0% |
| !! | TTTCATATCAATAGATTTAC+TGG | - | chr8_3:52876372-52876391 | Msa1294940:intron | 20.0% |
| !! | TTCATATCAATAGATTTACT+GGG | - | chr8_3:52876373-52876392 | Msa1294940:intron | 20.0% |
| !! | TATGAATAACTATCAAGAAA+GGG | + | chr8_3:52876786-52876805 | None:intergenic | 20.0% |
| !! | TTATGAATAACTATCAAGAA+AGG | + | chr8_3:52876787-52876806 | None:intergenic | 20.0% |
| !! | ACACTAAACATTAAATAAGT+GGG | + | chr8_3:52876819-52876838 | None:intergenic | 20.0% |
| !!! | CTTATTGTTGGTTTTATATA+AGG | + | chr8_3:52877074-52877093 | None:intergenic | 20.0% |
| !!! | TTTTGTTGATGTCAATTTTT+GGG | + | chr8_3:52877333-52877352 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGATGTCAATTTT+TGG | + | chr8_3:52877334-52877353 | None:intergenic | 20.0% |
| !! | TTGACATCAACAAAAAAATT+AGG | - | chr8_3:52877338-52877357 | Msa1294940:CDS | 20.0% |
| !! | TGACATCAACAAAAAAATTA+GGG | - | chr8_3:52877339-52877358 | Msa1294940:CDS | 20.0% |
| !!! | TTTATAATGAATATAGTGGA+TGG | + | chr8_3:52877415-52877434 | None:intergenic | 20.0% |
| !! | ATTCATTATAAAAACTTCAC+TGG | - | chr8_3:52877423-52877442 | Msa1294940:intron | 20.0% |
| !! | TTAAAAAATCCAAAACAAAC+GGG | - | chr8_3:52878018-52878037 | Msa1294940:intron | 20.0% |
| !! | CTATAATCTTATGTTTTTCG+TGG | - | chr8_3:52874928-52874947 | Msa1294940:CDS | 25.0% |
| ! | ACAACAACATATTCTAGTAT+TGG | + | chr8_3:52874955-52874974 | None:intergenic | 25.0% |
| ! | ACATTGGATATGTTTATAAG+TGG | - | chr8_3:52875067-52875086 | Msa1294940:intron | 25.0% |
| ! | CATTGGATATGTTTATAAGT+GGG | - | chr8_3:52875068-52875087 | Msa1294940:intron | 25.0% |
| ! | ATTGGATATGTTTATAAGTG+GGG | - | chr8_3:52875069-52875088 | Msa1294940:intron | 25.0% |
| ! | ATATATTTGAGGAACTAAGT+AGG | - | chr8_3:52875255-52875274 | Msa1294940:intron | 25.0% |
| ! | CAGGTAAACAAAGATAAATA+TGG | + | chr8_3:52875334-52875353 | None:intergenic | 25.0% |
| !!! | GAATCATTACTTTTTGAACT+TGG | - | chr8_3:52875624-52875643 | Msa1294940:CDS | 25.0% |
| ! | TAAAATGGATCTAGTAAAAC+TGG | - | chr8_3:52875870-52875889 | Msa1294940:CDS | 25.0% |
| !!! | GTATGTTTTCTGAAACAATA+CGG | - | chr8_3:52875908-52875927 | Msa1294940:CDS | 25.0% |
| !!! | TATGTTTTCTGAAACAATAC+GGG | - | chr8_3:52875909-52875928 | Msa1294940:CDS | 25.0% |
| ! | AAATGATTCTGTGATCATTA+TGG | - | chr8_3:52875955-52875974 | Msa1294940:CDS | 25.0% |
| !!! | TAGATTACATTTTTTTCCTG+TGG | - | chr8_3:52876001-52876020 | Msa1294940:intron | 25.0% |
| !! | AAATTAGGAATCAGTTTTCT+TGG | - | chr8_3:52876166-52876185 | Msa1294940:intron | 25.0% |
| ! | TACAAAACATCAATCAAACA+AGG | + | chr8_3:52876303-52876322 | None:intergenic | 25.0% |
| ! | TTAAAAGAACAAAAGCAGAA+AGG | + | chr8_3:52876411-52876430 | None:intergenic | 25.0% |
| ! | ATGAATAACTATCAAGAAAG+GGG | + | chr8_3:52876785-52876804 | None:intergenic | 25.0% |
| ! | CACACTAAACATTAAATAAG+TGG | + | chr8_3:52876820-52876839 | None:intergenic | 25.0% |
| ! | TAAAATGTTCACATATGACA+TGG | + | chr8_3:52876900-52876919 | None:intergenic | 25.0% |
| ! | ATTCAAATATCATACGGATA+AGG | + | chr8_3:52877049-52877068 | None:intergenic | 25.0% |
| ! | AAGGTGATTCAAATATCATA+CGG | + | chr8_3:52877055-52877074 | None:intergenic | 25.0% |
| ! | GTTAAGCTATAACTTATTGT+TGG | + | chr8_3:52877086-52877105 | None:intergenic | 25.0% |
| !!! | TCATTTTGATAGCATAACTT+AGG | - | chr8_3:52877681-52877700 | Msa1294940:exon | 25.0% |
| !!! | CATTTTGATAGCATAACTTA+GGG | - | chr8_3:52877682-52877701 | Msa1294940:exon | 25.0% |
| !! | TGAAATAGCTTTTCATTTTG+AGG | - | chr8_3:52877897-52877916 | Msa1294940:intron | 25.0% |
| !!! | ATATCATTTTGATGCCTTTA+TGG | - | chr8_3:52878074-52878093 | Msa1294940:intron | 25.0% |
| !! | TTGAATGAGCATACATATTT+TGG | - | chr8_3:52878439-52878458 | Msa1294940:intron | 25.0% |
| !! | TGAATGAGCATACATATTTT+GGG | - | chr8_3:52878440-52878459 | Msa1294940:intron | 25.0% |
| !!! | TACATATTTTGGGATTTTAG+AGG | - | chr8_3:52878450-52878469 | Msa1294940:intron | 25.0% |
| ! | GTCAATAACTATGATGTTAT+AGG | + | chr8_3:52878560-52878579 | None:intergenic | 25.0% |
| !!! | GTGAATTTTTTTCATGAGAT+TGG | - | chr8_3:52878628-52878647 | Msa1294940:five_prime_UTR | 25.0% |
| ATGCAAATTTAGCATAAGCA+AGG | + | chr8_3:52874983-52875002 | None:intergenic | 30.0% | |
| ! | ACAAATTGAGCAGTGTTTTA+TGG | - | chr8_3:52875024-52875043 | Msa1294940:intron | 30.0% |
| !! | ATTATCTTCGGTGTCAATTT+AGG | + | chr8_3:52875140-52875159 | None:intergenic | 30.0% |
| TTAGTTTAGGGATTAAATCG+AGG | - | chr8_3:52875288-52875307 | Msa1294940:intron | 30.0% | |
| TAGTTTAGGGATTAAATCGA+GGG | - | chr8_3:52875289-52875308 | Msa1294940:intron | 30.0% | |
| TCACAAAGCAAAAACAGATA+GGG | - | chr8_3:52875418-52875437 | Msa1294940:intron | 30.0% | |
| TGAACTTGGAACTTTATGTA+AGG | - | chr8_3:52875638-52875657 | Msa1294940:CDS | 30.0% | |
| !! | AAGGTTCATGTTTTGTTGAA+TGG | - | chr8_3:52875657-52875676 | Msa1294940:CDS | 30.0% |
| TAATCTAGGAGATGAAAAAC+TGG | + | chr8_3:52875724-52875743 | None:intergenic | 30.0% | |
| !! | CGTCTATCACATTTTAATCT+AGG | + | chr8_3:52875738-52875757 | None:intergenic | 30.0% |
| TTCTTCGTCTTCATAATTGT+TGG | - | chr8_3:52876057-52876076 | Msa1294940:intron | 30.0% | |
| ! | TAGAAGAAAGTATAGGAGTA+TGG | - | chr8_3:52876142-52876161 | Msa1294940:intron | 30.0% |
| ! | AGAAGAAAGTATAGGAGTAT+GGG | - | chr8_3:52876143-52876162 | Msa1294940:intron | 30.0% |
| ! | TTCTTGGTAGTTAGTTAGTT+AGG | - | chr8_3:52876182-52876201 | Msa1294940:intron | 30.0% |
| GTAGTTAGTTAGTTAGGATT+TGG | - | chr8_3:52876188-52876207 | Msa1294940:intron | 30.0% | |
| !!! | GTGGTTGGTTTTTTTGTTTT+AGG | - | chr8_3:52876214-52876233 | Msa1294940:intron | 30.0% |
| TATCAATAGATTTACTGGGA+CGG | - | chr8_3:52876377-52876396 | Msa1294940:intron | 30.0% | |
| !! | GGGAAAATTGTTTTTCAGTT+TGG | - | chr8_3:52876495-52876514 | Msa1294940:intron | 30.0% |
| ! | AGTTTCTTTTTCTTGACATG+TGG | - | chr8_3:52876521-52876540 | Msa1294940:intron | 30.0% |
| ! | GTTTCTTTTTCTTGACATGT+GGG | - | chr8_3:52876522-52876541 | Msa1294940:intron | 30.0% |
| ! | TTTCTTTTTCTTGACATGTG+GGG | - | chr8_3:52876523-52876542 | Msa1294940:intron | 30.0% |
| TCAGTTAAACAACTGCTTTA+TGG | - | chr8_3:52876563-52876582 | Msa1294940:intron | 30.0% | |
| CAGTTAAACAACTGCTTTAT+GGG | - | chr8_3:52876564-52876583 | Msa1294940:intron | 30.0% | |
| CATGTGAAAACTTAACAAGA+GGG | + | chr8_3:52876720-52876739 | None:intergenic | 30.0% | |
| TCATGTGAAAACTTAACAAG+AGG | + | chr8_3:52876721-52876740 | None:intergenic | 30.0% | |
| AGAGAGATTCTGATATGATA+AGG | + | chr8_3:52876751-52876770 | None:intergenic | 30.0% | |
| TGAATAACTATCAAGAAAGG+GGG | + | chr8_3:52876784-52876803 | None:intergenic | 30.0% | |
| ! | CAATTTTCAACTAAACCAGA+GGG | + | chr8_3:52876953-52876972 | None:intergenic | 30.0% |
| ! | ACAATTTTCAACTAAACCAG+AGG | + | chr8_3:52876954-52876973 | None:intergenic | 30.0% |
| CTTATTCCAAGTCGTTTATA+CGG | + | chr8_3:52877172-52877191 | None:intergenic | 30.0% | |
| AAGTGTAGATTCAATTGAGT+CGG | - | chr8_3:52877264-52877283 | Msa1294940:intron | 30.0% | |
| CAACGTATTTCGTATATGAT+CGG | - | chr8_3:52877530-52877549 | Msa1294940:intron | 30.0% | |
| !! | AAATGAAAAGTGCTCAACAA+TGG | + | chr8_3:52877667-52877686 | None:intergenic | 30.0% |
| ATGTCATACAATGAGAACAA+GGG | + | chr8_3:52878044-52878063 | None:intergenic | 30.0% | |
| AATGTCATACAATGAGAACA+AGG | + | chr8_3:52878045-52878064 | None:intergenic | 30.0% | |
| ! | CTTTAGCCTTCATATAAGAT+AGG | + | chr8_3:52878296-52878315 | None:intergenic | 30.0% |
| ATGTCCAATGTACGTAAATT+TGG | + | chr8_3:52878495-52878514 | None:intergenic | 30.0% | |
| GTCATACTCATGTCAAAATA+AGG | + | chr8_3:52878520-52878539 | None:intergenic | 30.0% | |
| AGGGATAAACACTTTCCAAA+GGG | + | chr8_3:52874500-52874519 | None:intergenic | 35.0% | |
| AAGGGATAAACACTTTCCAA+AGG | + | chr8_3:52874501-52874520 | None:intergenic | 35.0% | |
| !! | GATGATTTTGAGAATGGAGA+GGG | + | chr8_3:52874527-52874546 | None:intergenic | 35.0% |
| !! | TGATGATTTTGAGAATGGAG+AGG | + | chr8_3:52874528-52874547 | None:intergenic | 35.0% |
| TCTCCATTCTCAAAATCATC+AGG | - | chr8_3:52874527-52874546 | Msa1294940:intron | 35.0% | |
| CTTCGGCGTTAGAAAAAAAA+AGG | + | chr8_3:52874592-52874611 | None:intergenic | 35.0% | |
| !!! | CTTTTTTTTTCTAACGCCGA+AGG | - | chr8_3:52874590-52874609 | Msa1294940:three_prime_UTR | 35.0% |
| !! | ATACGAGAAGTTGATAACAG+TGG | + | chr8_3:52874628-52874647 | None:intergenic | 35.0% |
| ! | ATCGATTCTGTCGTTTATGT+GGG | - | chr8_3:52874786-52874805 | Msa1294940:three_prime_UTR | 35.0% |
| !! | TTAGTTGAGTTGAACACACT+AGG | - | chr8_3:52874883-52874902 | Msa1294940:CDS | 35.0% |
| ! | GTCTCTGGTTCAATTATCTT+CGG | + | chr8_3:52875152-52875171 | None:intergenic | 35.0% |
| TAATTGAACCAGAGACTTTG+AGG | - | chr8_3:52875156-52875175 | Msa1294940:intron | 35.0% | |
| AGAATAGAGAACACAAGTTG+AGG | + | chr8_3:52875399-52875418 | None:intergenic | 35.0% | |
| CTCACAAAGCAAAAACAGAT+AGG | - | chr8_3:52875417-52875436 | Msa1294940:intron | 35.0% | |
| !!! | ACAGATAGGGTTTTATTTCC+TGG | - | chr8_3:52875431-52875450 | Msa1294940:intron | 35.0% |
| TGGCTGGTAAATGTATACAA+AGG | - | chr8_3:52875567-52875586 | Msa1294940:intron | 35.0% | |
| TTCTGTAAATTGACAGGGTA+AGG | + | chr8_3:52875701-52875720 | None:intergenic | 35.0% | |
| !! | ACTGGTTCTGTAAATTGACA+GGG | + | chr8_3:52875706-52875725 | None:intergenic | 35.0% |
| !! | AACTGGTTCTGTAAATTGAC+AGG | + | chr8_3:52875707-52875726 | None:intergenic | 35.0% |
| TGATAGACGACAAGTTCAAT+TGG | - | chr8_3:52875749-52875768 | Msa1294940:CDS | 35.0% | |
| GATATGTCAAATGATTCTGC+TGG | - | chr8_3:52875801-52875820 | Msa1294940:CDS | 35.0% | |
| CTGTGATCATTATGGATGTT+TGG | - | chr8_3:52875963-52875982 | Msa1294940:CDS | 35.0% | |
| !!! | CTATTTTAGTTCAGCTTCTC+AGG | + | chr8_3:52876085-52876104 | None:intergenic | 35.0% |
| CTGAGAAGCTGAACTAAAAT+AGG | - | chr8_3:52876083-52876102 | Msa1294940:intron | 35.0% | |
| ! | GTATAGGAGTATGGGAAATT+AGG | - | chr8_3:52876151-52876170 | Msa1294940:intron | 35.0% |
| ! | GTTAGTTAGGATTTGGTTAG+TGG | - | chr8_3:52876195-52876214 | Msa1294940:intron | 35.0% |
| CTGTGCACAATAAGGATTAA+AGG | + | chr8_3:52876255-52876274 | None:intergenic | 35.0% | |
| CTTTAATCCTTATTGTGCAC+AGG | - | chr8_3:52876253-52876272 | Msa1294940:intron | 35.0% | |
| AAAAGATACTCTCTTCACAC+TGG | + | chr8_3:52876349-52876368 | None:intergenic | 35.0% | |
| TAAACCAGAAGGAGTTCAAA+GGG | - | chr8_3:52876475-52876494 | Msa1294940:intron | 35.0% | |
| TGTGAAAACTTAACACGAGA+GGG | + | chr8_3:52876661-52876680 | None:intergenic | 35.0% | |
| ATGTGAAAACTTAACACGAG+AGG | + | chr8_3:52876662-52876681 | None:intergenic | 35.0% | |
| AATAACTATCAAGAAAGGGG+GGG | + | chr8_3:52876782-52876801 | None:intergenic | 35.0% | |
| GAATAACTATCAAGAAAGGG+GGG | + | chr8_3:52876783-52876802 | None:intergenic | 35.0% | |
| TGTGTTTACTTGCATGTCTT+AGG | - | chr8_3:52876978-52876997 | Msa1294940:intron | 35.0% | |
| GTGTTTACTTGCATGTCTTA+GGG | - | chr8_3:52876979-52876998 | Msa1294940:intron | 35.0% | |
| TGTTTACTTGCATGTCTTAG+GGG | - | chr8_3:52876980-52876999 | Msa1294940:intron | 35.0% | |
| ATTGTTAGTGCAATACAGAG+AGG | + | chr8_3:52877009-52877028 | None:intergenic | 35.0% | |
| GATCGCTCACATTAATTCTT+GGG | + | chr8_3:52877150-52877169 | None:intergenic | 35.0% | |
| ! | TAAACGACTTGGAATAAGCA+AGG | - | chr8_3:52877174-52877193 | Msa1294940:intron | 35.0% |
| AAGAAGAAATTCAAGCAGCT+AGG | - | chr8_3:52877206-52877225 | Msa1294940:intron | 35.0% | |
| TTCCTGATTCAGAAATATGC+AGG | - | chr8_3:52877232-52877251 | Msa1294940:intron | 35.0% | |
| TCCTGATTCAGAAATATGCA+GGG | - | chr8_3:52877233-52877252 | Msa1294940:intron | 35.0% | |
| GACTCAATTGAATCTACACT+TGG | + | chr8_3:52877265-52877284 | None:intergenic | 35.0% | |
| ! | TCACTGGCATTTTTGTTACT+TGG | - | chr8_3:52877439-52877458 | Msa1294940:intron | 35.0% |
| AGGATAAGAGCTTTGCTTTA+TGG | - | chr8_3:52877562-52877581 | Msa1294940:CDS | 35.0% | |
| GGATAAGAGCTTTGCTTTAT+GGG | - | chr8_3:52877563-52877582 | Msa1294940:CDS | 35.0% | |
| AGCTGAGAGAAAAACCATAA+AGG | + | chr8_3:52878091-52878110 | None:intergenic | 35.0% | |
| GCTTATTTATATCCGTGCTT+TGG | - | chr8_3:52878122-52878141 | Msa1294940:intron | 35.0% | |
| !! | TTGGAGCATTTATCTTTTCG+TGG | - | chr8_3:52878152-52878171 | Msa1294940:intron | 35.0% |
| ! | ATTTATCTTTTCGTGGCTGT+TGG | - | chr8_3:52878159-52878178 | Msa1294940:intron | 35.0% |
| ! | TTTATCTTTTCGTGGCTGTT+GGG | - | chr8_3:52878160-52878179 | Msa1294940:intron | 35.0% |
| AATTACTGACACCATCAAGA+AGG | + | chr8_3:52878188-52878207 | None:intergenic | 35.0% | |
| CATCGACCTATCTTATATGA+AGG | - | chr8_3:52878287-52878306 | Msa1294940:intron | 35.0% | |
| !!! | GTTATGCCGTTTTGTTGAAT+CGG | - | chr8_3:52878389-52878408 | Msa1294940:intron | 35.0% |
| !!! | TTATGCCGTTTTGTTGAATC+GGG | - | chr8_3:52878390-52878409 | Msa1294940:intron | 35.0% |
| CAAATCCCGATTCAACAAAA+CGG | + | chr8_3:52878398-52878417 | None:intergenic | 35.0% | |
| !! | TGGGATTTTAGAGGCATATA+TGG | - | chr8_3:52878459-52878478 | Msa1294940:intron | 35.0% |
| GCTTCCAAATTTACGTACAT+TGG | - | chr8_3:52878488-52878507 | Msa1294940:intron | 35.0% | |
| ATAGGCAACAAGAATAGCTT+TGG | + | chr8_3:52878542-52878561 | None:intergenic | 35.0% | |
| !! | CGTCCTGATGATTTTGAGAA+TGG | + | chr8_3:52874533-52874552 | None:intergenic | 40.0% |
| !! | AGGAGGAAAGTGTTGTTGTT+GGG | + | chr8_3:52874572-52874591 | None:intergenic | 40.0% |
| !! | AAGGAGGAAAGTGTTGTTGT+TGG | + | chr8_3:52874573-52874592 | None:intergenic | 40.0% |
| CGGCGTTAGAAAAAAAAAGG+AGG | + | chr8_3:52874589-52874608 | None:intergenic | 40.0% | |
| GCAGTAGAAGAGAATGAAAG+TGG | + | chr8_3:52874672-52874691 | None:intergenic | 40.0% | |
| GACAGAATCGATGCAATTTG+AGG | + | chr8_3:52874778-52874797 | None:intergenic | 40.0% | |
| !! | CATCGATTCTGTCGTTTATG+TGG | - | chr8_3:52874785-52874804 | Msa1294940:three_prime_UTR | 40.0% |
| GAGTTGAACACACTAGGATA+TGG | - | chr8_3:52874889-52874908 | Msa1294940:CDS | 40.0% | |
| !! | TCTTCGGTGTCAATTTAGGT+TGG | + | chr8_3:52875136-52875155 | None:intergenic | 40.0% |
| GAGAACTGATGAACAACATC+AGG | + | chr8_3:52875353-52875372 | None:intergenic | 40.0% | |
| ! | ATGATTGTATCTGGGTTGAG+TGG | - | chr8_3:52875470-52875489 | Msa1294940:intron | 40.0% |
| AAAATGACATGACCCGAACA+CGG | + | chr8_3:52875544-52875563 | None:intergenic | 40.0% | |
| !! | TCAATTGGTCAGAAGTGCTA+TGG | - | chr8_3:52875764-52875783 | Msa1294940:CDS | 40.0% |
| !! | CAATTGGTCAGAAGTGCTAT+GGG | - | chr8_3:52875765-52875784 | Msa1294940:CDS | 40.0% |
| !! | ATGGATGTTTGGTTCTCTTG+TGG | - | chr8_3:52875974-52875993 | Msa1294940:CDS | 40.0% |
| !! | TCTTGCTCATTTGGTTTGCT+AGG | - | chr8_3:52876024-52876043 | Msa1294940:intron | 40.0% |
| ! | GTTAGGATTTGGTTAGTGGT+TGG | - | chr8_3:52876199-52876218 | Msa1294940:intron | 40.0% |
| TAGACTTCCTGTGCACAATA+AGG | + | chr8_3:52876263-52876282 | None:intergenic | 40.0% | |
| GACTTGTAATGCATCTCTTG+GGG | + | chr8_3:52876439-52876458 | None:intergenic | 40.0% | |
| GGACTTGTAATGCATCTCTT+GGG | + | chr8_3:52876440-52876459 | None:intergenic | 40.0% | |
| CTAAACCAGAAGGAGTTCAA+AGG | - | chr8_3:52876474-52876493 | Msa1294940:intron | 40.0% | |
| ! | TTTTCCCTTTGAACTCCTTC+TGG | + | chr8_3:52876482-52876501 | None:intergenic | 40.0% |
| ! | TTTTTCTTGACATGTGGGGT+GGG | - | chr8_3:52876527-52876546 | Msa1294940:intron | 40.0% |
| AAGAAGGGAAACAGTCATTG+TGG | + | chr8_3:52876619-52876638 | None:intergenic | 40.0% | |
| TTCAACTAAACCAGAGGGTT+GGG | + | chr8_3:52876948-52876967 | None:intergenic | 40.0% | |
| TTTCAACTAAACCAGAGGGT+TGG | + | chr8_3:52876949-52876968 | None:intergenic | 40.0% | |
| AACAGCTGCATTTGTAGCAA+AGG | + | chr8_3:52877125-52877144 | None:intergenic | 40.0% | |
| GGATCGCTCACATTAATTCT+TGG | + | chr8_3:52877151-52877170 | None:intergenic | 40.0% | |
| GATATTGCAACCTGAAGTGT+TGG | + | chr8_3:52877499-52877518 | None:intergenic | 40.0% | |
| GTCTAGCAGACAATATCATC+AGG | + | chr8_3:52877645-52877664 | None:intergenic | 40.0% | |
| ! | GGTTTTTCTCTCAGCTTCTT+AGG | - | chr8_3:52878095-52878114 | Msa1294940:intron | 40.0% |
| TCCTCCCATTCCTATAATCA+AGG | - | chr8_3:52878207-52878226 | Msa1294940:intron | 40.0% | |
| CCTCCCATTCCTATAATCAA+GGG | - | chr8_3:52878208-52878227 | Msa1294940:intron | 40.0% | |
| GGTCCCTTGATTATAGGAAT+GGG | + | chr8_3:52878214-52878233 | None:intergenic | 40.0% | |
| TGGTCCCTTGATTATAGGAA+TGG | + | chr8_3:52878215-52878234 | None:intergenic | 40.0% | |
| TTCCTATAATCAAGGGACCA+AGG | - | chr8_3:52878215-52878234 | Msa1294940:intron | 40.0% | |
| TCCTATAATCAAGGGACCAA+GGG | - | chr8_3:52878216-52878235 | Msa1294940:intron | 40.0% | |
| TGAGAATGGAGAGGGAAGAA+GGG | + | chr8_3:52874519-52874538 | None:intergenic | 45.0% | |
| TTGAGAATGGAGAGGGAAGA+AGG | + | chr8_3:52874520-52874539 | None:intergenic | 45.0% | |
| ! | GTGGAAAGCGTGTTTACCTT+CGG | + | chr8_3:52874609-52874628 | None:intergenic | 45.0% |
| ! | TTGAACCAGAGACTTTGAGG+AGG | - | chr8_3:52875159-52875178 | Msa1294940:intron | 45.0% |
| GTACTAGTCCTAACCCACTT+GGG | + | chr8_3:52875224-52875243 | None:intergenic | 45.0% | |
| AGTACTAGTCCTAACCCACT+TGG | + | chr8_3:52875225-52875244 | None:intergenic | 45.0% | |
| ! | AGGAGAGACAGCGTTAGTTT+AGG | - | chr8_3:52875275-52875294 | Msa1294940:intron | 45.0% |
| ! | GGAGAGACAGCGTTAGTTTA+GGG | - | chr8_3:52875276-52875295 | Msa1294940:intron | 45.0% |
| !!! | TCGGGTCATGTCATTTTCTG+TGG | - | chr8_3:52875547-52875566 | Msa1294940:intron | 45.0% |
| !!! | GTCATGTCATTTTCTGTGGC+TGG | - | chr8_3:52875551-52875570 | Msa1294940:intron | 45.0% |
| AGTGCTATGGGTGCTTCATT+TGG | - | chr8_3:52875777-52875796 | Msa1294940:CDS | 45.0% | |
| ! | TTCCTGTGGTCTTGCTCATT+TGG | - | chr8_3:52876015-52876034 | Msa1294940:intron | 45.0% |
| AACCAAATGAGCAAGACCAC+AGG | + | chr8_3:52876020-52876039 | None:intergenic | 45.0% | |
| CGGACTTGTAATGCATCTCT+TGG | + | chr8_3:52876441-52876460 | None:intergenic | 45.0% | |
| AGATGCATTACAAGTCCGAG+AGG | - | chr8_3:52876443-52876462 | Msa1294940:intron | 45.0% | |
| GATGCATTACAAGTCCGAGA+GGG | - | chr8_3:52876444-52876463 | Msa1294940:intron | 45.0% | |
| ! | CTTTTTCTTGACATGTGGGG+TGG | - | chr8_3:52876526-52876545 | Msa1294940:intron | 45.0% |
| ! | TTTTCTTGACATGTGGGGTG+GGG | - | chr8_3:52876528-52876547 | Msa1294940:intron | 45.0% |
| TATGGGTGACAGACAGATGT+TGG | - | chr8_3:52876581-52876600 | Msa1294940:intron | 45.0% | |
| AGCGATCCGTATAAACGACT+TGG | - | chr8_3:52877163-52877182 | Msa1294940:intron | 45.0% | |
| ! | GCCCTGCATATTTCTGAATC+AGG | + | chr8_3:52877237-52877256 | None:intergenic | 45.0% |
| ! | CAATCAATCCCGATTCGTTC+AGG | - | chr8_3:52877366-52877385 | Msa1294940:CDS | 45.0% |
| TTCCTCGGTTGGAAAGAGAA+CGG | + | chr8_3:52877473-52877492 | None:intergenic | 45.0% | |
| TTCTCTTTCCAACCGAGGAA+GGG | - | chr8_3:52877473-52877492 | Msa1294940:intron | 45.0% | |
| TATATGATCGGCTGAAGAGC+AGG | - | chr8_3:52877542-52877561 | Msa1294940:CDS | 45.0% | |
| ! | TTATATCCGTGCTTTGGTGC+AGG | - | chr8_3:52878128-52878147 | Msa1294940:intron | 45.0% |
| ! | TATATCCGTGCTTTGGTGCA+GGG | - | chr8_3:52878129-52878148 | Msa1294940:intron | 45.0% |
| CCCTTGATTATAGGAATGGG+AGG | + | chr8_3:52878211-52878230 | None:intergenic | 45.0% | |
| GTATCTCAATCTGAATGCCG+CGG | - | chr8_3:52878320-52878339 | Msa1294940:intron | 45.0% | |
| !!! | GATAAATAAATTTTAAAAAA+AGG | + | chr8_3:52874727-52874746 | None:intergenic | 5.0% |
| !!! | TAAAAATGATTTTTTTTTAA+TGG | - | chr8_3:52877921-52877940 | Msa1294940:intron | 5.0% |
| !! | GGGTTTTGGTGTATGCCCTT+TGG | - | chr8_3:52874482-52874501 | Msa1294940:three_prime_UTR | 50.0% |
| !! | GTGGAATTGGCTTGGGACTT+GGG | + | chr8_3:52875193-52875212 | None:intergenic | 50.0% |
| !! | AGTGGAATTGGCTTGGGACT+TGG | + | chr8_3:52875194-52875213 | None:intergenic | 50.0% |
| AGTCCCAAGCCAATTCCACT+AGG | - | chr8_3:52875194-52875213 | Msa1294940:intron | 50.0% | |
| ! | TGGCCTAGTGGAATTGGCTT+GGG | + | chr8_3:52875200-52875219 | None:intergenic | 50.0% |
| TTGGCCTAGTGGAATTGGCT+TGG | + | chr8_3:52875201-52875220 | None:intergenic | 50.0% | |
| !! | TTGGGTTGGCCTAGTGGAAT+TGG | + | chr8_3:52875206-52875225 | None:intergenic | 50.0% |
| TAGTCCTAACCCACTTGGGT+TGG | + | chr8_3:52875220-52875239 | None:intergenic | 50.0% | |
| AGGCAACGAGGAGGTAATTG+GGG | + | chr8_3:52875512-52875531 | None:intergenic | 50.0% | |
| GAGGCAACGAGGAGGTAATT+GGG | + | chr8_3:52875513-52875532 | None:intergenic | 50.0% | |
| TGGGCATACCTTTCCACACT+GGG | + | chr8_3:52875602-52875621 | None:intergenic | 50.0% | |
| TTGGGCATACCTTTCCACAC+TGG | + | chr8_3:52875603-52875622 | None:intergenic | 50.0% | |
| CATTACAAGTCCGAGAGGGT+AGG | - | chr8_3:52876448-52876467 | Msa1294940:intron | 50.0% | |
| TTTCTTGACATGTGGGGTGG+GGG | - | chr8_3:52876529-52876548 | Msa1294940:intron | 50.0% | |
| TTTCCCTTCTTCCCTACCCT+TGG | - | chr8_3:52876628-52876647 | Msa1294940:intron | 50.0% | |
| TTCCCTTCTTCCCTACCCTT+GGG | - | chr8_3:52876629-52876648 | Msa1294940:intron | 50.0% | |
| TGACTTTCTTCCCCACCCTT+AGG | - | chr8_3:52876688-52876707 | Msa1294940:intron | 50.0% | |
| ACAAGAGGGTCTCTGCCTAA+GGG | + | chr8_3:52876706-52876725 | None:intergenic | 50.0% | |
| AACAAGAGGGTCTCTGCCTA+AGG | + | chr8_3:52876707-52876726 | None:intergenic | 50.0% | |
| TCTGACAGCCTGAACGAATC+GGG | + | chr8_3:52877377-52877396 | None:intergenic | 50.0% | |
| CTCTGACAGCCTGAACGAAT+CGG | + | chr8_3:52877378-52877397 | None:intergenic | 50.0% | |
| GTTCTCTTTCCAACCGAGGA+AGG | - | chr8_3:52877472-52877491 | Msa1294940:intron | 50.0% | |
| ! | GAACAAGGGCCCGTTTGTTT+TGG | + | chr8_3:52878030-52878049 | None:intergenic | 50.0% |
| GCTGTTGGGAACCTTCTTGA+TGG | - | chr8_3:52878174-52878193 | Msa1294940:intron | 50.0% | |
| GCCCTTGGTCCCTTGATTAT+AGG | + | chr8_3:52878220-52878239 | None:intergenic | 50.0% | |
| GTGATCACCTCAAATGCCCT+TGG | + | chr8_3:52878235-52878254 | None:intergenic | 50.0% | |
| TCTTCTGCTAAAATCCGCCG+CGG | + | chr8_3:52878340-52878359 | None:intergenic | 50.0% | |
| GTGCTCCTCCTCAAAGTCTC+TGG | + | chr8_3:52875167-52875186 | None:intergenic | 55.0% | |
| TTCCACTAGGCCAACCCAAG+TGG | - | chr8_3:52875207-52875226 | Msa1294940:intron | 55.0% | |
| TCCACTAGGCCAACCCAAGT+GGG | - | chr8_3:52875208-52875227 | Msa1294940:intron | 55.0% | |
| ! | TAGGCCAACCCAAGTGGGTT+AGG | - | chr8_3:52875213-52875232 | Msa1294940:intron | 55.0% |
| GGCAACGAGGAGGTAATTGG+GGG | + | chr8_3:52875511-52875530 | None:intergenic | 55.0% | |
| CGAGGCAACGAGGAGGTAAT+TGG | + | chr8_3:52875514-52875533 | None:intergenic | 55.0% | |
| AAGGACAGCGTTTCCCAGTG+TGG | - | chr8_3:52875586-52875605 | Msa1294940:CDS | 55.0% | |
| CAGCGTTTCCCAGTGTGGAA+AGG | - | chr8_3:52875591-52875610 | Msa1294940:CDS | 55.0% | |
| TACAAGTCCGAGAGGGTAGG+TGG | - | chr8_3:52876451-52876470 | Msa1294940:intron | 55.0% | |
| GGTTTAGCCACCTACCCTCT+CGG | + | chr8_3:52876461-52876480 | None:intergenic | 55.0% | |
| GGGTAGGTGGCTAAACCAGA+AGG | - | chr8_3:52876464-52876483 | Msa1294940:intron | 55.0% | |
| TTCTTGACATGTGGGGTGGG+GGG | - | chr8_3:52876530-52876549 | Msa1294940:intron | 55.0% | |
| TGCCCAAGGGTAGGGAAGAA+GGG | + | chr8_3:52876634-52876653 | None:intergenic | 55.0% | |
| AGGGTTGGGAGTGGCACAAA+TGG | + | chr8_3:52876934-52876953 | None:intergenic | 55.0% | |
| CTAAACCAGAGGGTTGGGAG+TGG | + | chr8_3:52876943-52876962 | None:intergenic | 55.0% | |
| CGATTCGTTCAGGCTGTCAG+AGG | - | chr8_3:52877376-52877395 | Msa1294940:CDS | 55.0% | |
| GACCGTTCTCTTTCCAACCG+AGG | - | chr8_3:52877468-52877487 | Msa1294940:intron | 55.0% | |
| !! | CTGAAGTGTTGGCCCTTCCT+CGG | + | chr8_3:52877488-52877507 | None:intergenic | 55.0% |
| TCCAACCCTGCACCAAAGCA+CGG | + | chr8_3:52878137-52878156 | None:intergenic | 55.0% | |
| !! | CAAGGGACCAAGGGCATTTG+AGG | - | chr8_3:52878225-52878244 | Msa1294940:intron | 55.0% |
| TCTCAATCTGAATGCCGCGG+CGG | - | chr8_3:52878323-52878342 | Msa1294940:intron | 55.0% | |
| !! | ACCCACTTGGGTTGGCCTAG+TGG | + | chr8_3:52875212-52875231 | None:intergenic | 60.0% |
| CGTGATTCGAGGCAACGAGG+AGG | + | chr8_3:52875521-52875540 | None:intergenic | 60.0% | |
| GCCTCGAATCACGCCGTGTT+CGG | - | chr8_3:52875528-52875547 | Msa1294940:intron | 60.0% | |
| CCTCGAATCACGCCGTGTTC+GGG | - | chr8_3:52875529-52875548 | Msa1294940:intron | 60.0% | |
| CTGCCCAAGGGTAGGGAAGA+AGG | + | chr8_3:52876635-52876654 | None:intergenic | 60.0% | |
| AGGGTCTCTGCCCAAGGGTA+GGG | + | chr8_3:52876642-52876661 | None:intergenic | 60.0% | |
| ACGAGAGGGTCTCTGCCCAA+GGG | + | chr8_3:52876647-52876666 | None:intergenic | 60.0% | |
| AGGGTCTCTGCCTAAGGGTG+GGG | + | chr8_3:52876701-52876720 | None:intergenic | 60.0% | |
| GAGGGTCTCTGCCTAAGGGT+GGG | + | chr8_3:52876702-52876721 | None:intergenic | 60.0% | |
| AGAGGGTCTCTGCCTAAGGG+TGG | + | chr8_3:52876703-52876722 | None:intergenic | 60.0% | |
| ! | TTGTGCCACTCCCAACCCTC+TGG | - | chr8_3:52876935-52876954 | Msa1294940:intron | 60.0% |
| !! | AGTGTTGGCCCTTCCTCGGT+TGG | + | chr8_3:52877484-52877503 | None:intergenic | 60.0% |
| CGAGGAAGGGCCAACACTTC+AGG | - | chr8_3:52877486-52877505 | Msa1294940:intron | 60.0% | |
| ! | TCCGTGCTTTGGTGCAGGGT+TGG | - | chr8_3:52878133-52878152 | Msa1294940:intron | 60.0% |
| CGGCGTGATTCGAGGCAACG+AGG | + | chr8_3:52875524-52875543 | None:intergenic | 65.0% | |
| CCCGAACACGGCGTGATTCG+AGG | + | chr8_3:52875532-52875551 | None:intergenic | 65.0% | |
| GAGGGTCTCTGCCCAAGGGT+AGG | + | chr8_3:52876643-52876662 | None:intergenic | 65.0% | |
| CACGAGAGGGTCTCTGCCCA+AGG | + | chr8_3:52876648-52876667 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 52874480 | 52878674 | 52874480 | ID=Msa1294940;Name=Msa1294940 |
| chr8_3 | mRNA | 52874480 | 52878674 | 52874480 | ID=Msa1294940-mRNA-1;Parent=Msa1294940;Name=Msa1294940-mRNA-1;_AED=0.02;_eAED=0.02;_QI=206|1|1|1|0.6|0.33|6|346|282 |
| chr8_3 | exon | 52874480 | 52874508 | 52874480 | ID=Msa1294940-mRNA-1:exon:15057;Parent=Msa1294940-mRNA-1 |
| chr8_3 | exon | 52874531 | 52875004 | 52874531 | ID=Msa1294940-mRNA-1:exon:15056;Parent=Msa1294940-mRNA-1 |
| chr8_3 | exon | 52875570 | 52876014 | 52875570 | ID=Msa1294940-mRNA-1:exon:15055;Parent=Msa1294940-mRNA-1 |
| chr8_3 | exon | 52877332 | 52877435 | 52877332 | ID=Msa1294940-mRNA-1:exon:15054;Parent=Msa1294940-mRNA-1 |
| chr8_3 | exon | 52877542 | 52877758 | 52877542 | ID=Msa1294940-mRNA-1:exon:15053;Parent=Msa1294940-mRNA-1 |
| chr8_3 | exon | 52878543 | 52878674 | 52878543 | ID=Msa1294940-mRNA-1:exon:15052;Parent=Msa1294940-mRNA-1 |
| chr8_3 | five_prime_UTR | 52878543 | 52878674 | 52878543 | ID=Msa1294940-mRNA-1:five_prime_utr;Parent=Msa1294940-mRNA-1 |
| chr8_3 | five_prime_UTR | 52877685 | 52877758 | 52877685 | ID=Msa1294940-mRNA-1:five_prime_utr;Parent=Msa1294940-mRNA-1 |
| chr8_3 | CDS | 52877542 | 52877684 | 52877542 | ID=Msa1294940-mRNA-1:cds;Parent=Msa1294940-mRNA-1 |
| chr8_3 | CDS | 52877332 | 52877435 | 52877332 | ID=Msa1294940-mRNA-1:cds;Parent=Msa1294940-mRNA-1 |
| chr8_3 | CDS | 52875570 | 52876014 | 52875570 | ID=Msa1294940-mRNA-1:cds;Parent=Msa1294940-mRNA-1 |
| chr8_3 | CDS | 52874848 | 52875004 | 52874848 | ID=Msa1294940-mRNA-1:cds;Parent=Msa1294940-mRNA-1 |
| chr8_3 | three_prime_UTR | 52874531 | 52874847 | 52874531 | ID=Msa1294940-mRNA-1:three_prime_utr;Parent=Msa1294940-mRNA-1 |
| chr8_3 | three_prime_UTR | 52874480 | 52874508 | 52874480 | ID=Msa1294940-mRNA-1:three_prime_utr;Parent=Msa1294940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
