Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514390 | XP_024634267.1 | 97.351 | 151 | 4 | 0 | 1 | 151 | 1 | 151 | 1.23e-106 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514390 | sp|Q8LBZ4|OTU4_ARATH | 60.274 | 146 | 58 | 0 | 2 | 147 | 158 | 303 | 8.18e-62 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514390 | A0A396IU62 | 97.351 | 151 | 4 | 0 | 1 | 151 | 1 | 151 | 5.88e-107 | 310 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012740 | Msa0514390 | 0.826424 | 2.733581e-54 | -8.615850e-47 |
| Msa0050730 | Msa0514390 | 0.800730 | 1.256832e-48 | -8.615850e-47 |
| Msa0140910 | Msa0514390 | 0.819330 | 1.228866e-52 | -8.615850e-47 |
| Msa0151690 | Msa0514390 | 0.813180 | 2.916362e-51 | -8.615850e-47 |
| Msa0193200 | Msa0514390 | 0.811898 | 5.559797e-51 | -8.615850e-47 |
| Msa0211010 | Msa0514390 | 0.802387 | 5.746348e-49 | -8.615850e-47 |
| Msa0440110 | Msa0514390 | 0.809877 | 1.522358e-50 | -8.615850e-47 |
| Msa0251670 | Msa0514390 | 0.801449 | 8.958564e-49 | -8.615850e-47 |
| Msa0290650 | Msa0514390 | 0.812205 | 4.765802e-51 | -8.615850e-47 |
| Msa0511890 | Msa0514390 | 0.815625 | 8.398541e-52 | -8.615850e-47 |
| Msa0514390 | Msa0530210 | 0.809598 | 1.748595e-50 | -8.615850e-47 |
| Msa0514390 | Msa0626890 | 0.801167 | 1.023097e-48 | -8.615850e-47 |
| Msa0514390 | Msa0782330 | 0.802835 | 4.646966e-49 | -8.615850e-47 |
| Msa0514390 | Msa1016110 | 0.801176 | 1.018844e-48 | -8.615850e-47 |
| Msa0514390 | Msa1081600 | 0.818163 | 2.262509e-52 | -8.615850e-47 |
| Msa0514390 | Msa1166370 | 0.807061 | 6.074224e-50 | -8.615850e-47 |
| Msa0514390 | Msa1289340 | 0.813586 | 2.374259e-51 | -8.615850e-47 |
| Msa0514390 | Msa1397540 | 0.819110 | 1.379650e-52 | -8.615850e-47 |
| Msa0514390 | Msa1436040 | 0.807147 | 5.826939e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514390 | MtrunA17_Chr3g0122741 | 97.351 | 151 | 4 | 0 | 1 | 151 | 1 | 151 | 1.13e-110 | 310 |
| Msa0514390 | MtrunA17_Chr1g0174241 | 65.035 | 143 | 50 | 0 | 6 | 148 | 184 | 326 | 9.99e-68 | 208 |
| Msa0514390 | MtrunA17_Chr1g0174221 | 58.824 | 136 | 55 | 1 | 14 | 148 | 99 | 234 | 1.12e-55 | 175 |
| Msa0514390 | MtrunA17_Chr1g0198131 | 47.682 | 151 | 75 | 2 | 2 | 148 | 153 | 303 | 2.69e-47 | 155 |
| Msa0514390 | MtrunA17_Chr4g0005721 | 29.412 | 153 | 90 | 5 | 12 | 147 | 77 | 228 | 1.78e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514390 | AT3G57810.2 | 60.274 | 146 | 58 | 0 | 2 | 147 | 158 | 303 | 8.31e-63 | 195 |
| Msa0514390 | AT3G57810.4 | 60.274 | 146 | 58 | 0 | 2 | 147 | 158 | 303 | 8.31e-63 | 195 |
| Msa0514390 | AT3G57810.3 | 60.274 | 146 | 58 | 0 | 2 | 147 | 158 | 303 | 8.31e-63 | 195 |
| Msa0514390 | AT2G38025.2 | 30.189 | 159 | 81 | 7 | 16 | 148 | 57 | 211 | 6.03e-14 | 66.6 |
| Msa0514390 | AT2G38025.1 | 30.189 | 159 | 81 | 7 | 16 | 148 | 80 | 234 | 7.21e-14 | 66.6 |
| Msa0514390 | AT3G57810.1 | 58.333 | 48 | 20 | 0 | 10 | 57 | 166 | 213 | 2.38e-12 | 62.4 |
Find 44 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAGACATACGAATTAT+TGG | 0.254814 | 3_4:-65076438 | None:intergenic |
| AAAATTAAAATTGCAGAGTT+AGG | 0.273250 | 3_4:-65078322 | None:intergenic |
| CCATCATAGATGACTCTAAT+AGG | 0.322276 | 3_4:-65078244 | None:intergenic |
| AAAAGAAATGCTGAAAAGTT+TGG | 0.331509 | 3_4:+65076141 | None:intergenic |
| GCTGAATACGGCCAGGAGTA+TGG | 0.331664 | 3_4:+65078211 | Msa0514390:CDS |
| AGTAAATATCTTATGAACTA+TGG | 0.335085 | 3_4:+65076288 | Msa0514390:five_prime_UTR |
| AGAGTCATCTATGATGGTTT+TGG | 0.346483 | 3_4:+65078250 | Msa0514390:CDS |
| TGCTGCATGACCACTGTTAT+AGG | 0.372923 | 3_4:-65078160 | None:intergenic |
| AAATGAGAAAGTCTCAAGTA+TGG | 0.374440 | 3_4:+65077966 | Msa0514390:CDS |
| CTTTCTCATTTGAACTGTAT+AGG | 0.374650 | 3_4:-65077954 | None:intergenic |
| AATCAAGCACGACATTAATT+CGG | 0.414557 | 3_4:-65076354 | None:intergenic |
| GTTTGGAGGAAGTGTGATGC+AGG | 0.416279 | 3_4:+65076158 | Msa0514390:five_prime_UTR |
| TGCGACGACATGAGAAGTTC+AGG | 0.431577 | 3_4:-65077998 | None:intergenic |
| TGGGTCCCCTCTTCTGAGGC+AGG | 0.435858 | 3_4:-65076808 | None:intergenic |
| TGTCGTGCTTGATTTGAGTT+TGG | 0.444782 | 3_4:+65076363 | Msa0514390:five_prime_UTR |
| CTTAAAATTATAGCTGAATA+CGG | 0.456379 | 3_4:+65078199 | Msa0514390:CDS |
| AGAAGACAAGAGCAATATAC+TGG | 0.456913 | 3_4:+65076314 | Msa0514390:five_prime_UTR |
| CCTATTAGAGTCATCTATGA+TGG | 0.458058 | 3_4:+65078244 | Msa0514390:CDS |
| ATGTTTAGATCTGTGGTCTA+TGG | 0.466866 | 3_4:+65076783 | Msa0514390:CDS |
| CACAGTTAATTATTACTACT+AGG | 0.472097 | 3_4:-65078352 | None:intergenic |
| GCCTGGTGAGACTTGGAGGT+GGG | 0.474250 | 3_4:-65076827 | None:intergenic |
| GATTCTCCTTTCCATACTCC+TGG | 0.503121 | 3_4:-65078222 | None:intergenic |
| TTGATTTGAGTTTGGTTTCG+CGG | 0.511202 | 3_4:+65076371 | Msa0514390:five_prime_UTR |
| AATGAGAAAGTCTCAAGTAT+GGG | 0.519563 | 3_4:+65077967 | Msa0514390:CDS |
| AACATACATCTACCATCTCC+TGG | 0.526181 | 3_4:-65076765 | None:intergenic |
| AGAGGAGAGTAGACACTGAA+TGG | 0.540031 | 3_4:+65077124 | Msa0514390:CDS |
| ATATTGTACAGGTTTCTTGA+CGG | 0.541010 | 3_4:+65077920 | Msa0514390:intron |
| TGCCTGGTGAGACTTGGAGG+TGG | 0.552260 | 3_4:-65076828 | None:intergenic |
| AATTATAGCTGAATACGGCC+AGG | 0.560297 | 3_4:+65078204 | Msa0514390:CDS |
| ATTTAGGATGCCTATAACAG+TGG | 0.560992 | 3_4:+65078150 | Msa0514390:intron |
| GAGGTGGGTCCCCTCTTCTG+AGG | 0.564647 | 3_4:-65076812 | None:intergenic |
| ATGGTGCCTGCCTCAGAAGA+GGG | 0.565144 | 3_4:+65076802 | Msa0514390:CDS |
| ACCCACCTCCAAGTCTCACC+AGG | 0.567674 | 3_4:+65076826 | Msa0514390:CDS |
| AGAAATGCTGAAAAGTTTGG+AGG | 0.568387 | 3_4:+65076144 | None:intergenic |
| GTTATAGGAATACCAGGAGA+TGG | 0.570785 | 3_4:+65076753 | Msa0514390:intron |
| AAGACATACGAATTATTGGA+AGG | 0.586566 | 3_4:-65076434 | None:intergenic |
| TATGGTGCCTGCCTCAGAAG+AGG | 0.606464 | 3_4:+65076801 | Msa0514390:CDS |
| AACACTTCAATACATCATAG+TGG | 0.613291 | 3_4:-65078273 | None:intergenic |
| TAGATGTATGTTTAGATCTG+TGG | 0.614910 | 3_4:+65076776 | Msa0514390:CDS |
| ATGAGAAAGTCTCAAGTATG+GGG | 0.628007 | 3_4:+65077968 | Msa0514390:CDS |
| TTGTGGACGAGTTCATCAAG+AGG | 0.642968 | 3_4:+65077106 | Msa0514390:CDS |
| TGGTGCCTGCCTCAGAAGAG+GGG | 0.646066 | 3_4:+65076803 | Msa0514390:CDS |
| AGAAAGTCTCAAGTATGGGG+AGG | 0.654651 | 3_4:+65077971 | Msa0514390:CDS |
| ATACGGCCAGGAGTATGGAA+AGG | 0.662932 | 3_4:+65078216 | Msa0514390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAAACATATTTTTTCA+AGG | + | chr3_4:65077560-65077579 | Msa0514390:intron | 10.0% |
| !!! | AAATAAAACATATTTTTTCA+AGG | + | chr3_4:65077560-65077579 | Msa0514390:intron | 10.0% |
| !!! | TTGAAACATTTTTTTGTTAT+AGG | + | chr3_4:65076738-65076757 | Msa0514390:intron | 15.0% |
| !! | TGCATATAATCAAAATATTA+GGG | - | chr3_4:65077397-65077416 | None:intergenic | 15.0% |
| !!! | AAATATGTTTTATTTTGTCA+CGG | - | chr3_4:65077555-65077574 | None:intergenic | 15.0% |
| !!! | TTGAAACATTTTTTTGTTAT+AGG | + | chr3_4:65076738-65076757 | Msa0514390:intron | 15.0% |
| !! | TGCATATAATCAAAATATTA+GGG | - | chr3_4:65077397-65077416 | None:intergenic | 15.0% |
| !!! | AAATATGTTTTATTTTGTCA+CGG | - | chr3_4:65077555-65077574 | None:intergenic | 15.0% |
| !! | AGTAAATATCTTATGAACTA+TGG | + | chr3_4:65076288-65076307 | Msa0514390:five_prime_UTR | 20.0% |
| !!! | CCATTTTAAATTGGATTTAT+AGG | - | chr3_4:65076641-65076660 | None:intergenic | 20.0% |
| !! | CCTATAAATCCAATTTAAAA+TGG | + | chr3_4:65076638-65076657 | Msa0514390:intron | 20.0% |
| !!! | AAATCCAATTTAAAATGGAA+AGG | + | chr3_4:65076643-65076662 | Msa0514390:intron | 20.0% |
| !! | TTGAAATTATGTAGTGTAAT+TGG | + | chr3_4:65076952-65076971 | Msa0514390:intron | 20.0% |
| !! | AATAGAGCACAAATTATATA+TGG | + | chr3_4:65077009-65077028 | Msa0514390:intron | 20.0% |
| !!! | AAATTTGTAACCAAACTTTT+TGG | - | chr3_4:65077168-65077187 | None:intergenic | 20.0% |
| !! | GTGCATATAATCAAAATATT+AGG | - | chr3_4:65077398-65077417 | None:intergenic | 20.0% |
| !! | GATATAAATATCCACAATAT+AGG | - | chr3_4:65077422-65077441 | None:intergenic | 20.0% |
| !! | TGCATTATTAAATTATCATG+AGG | - | chr3_4:65077527-65077546 | None:intergenic | 20.0% |
| !!! | AACATATTTTTTCAAGGAAA+TGG | + | chr3_4:65077566-65077585 | Msa0514390:intron | 20.0% |
| !! | TAGAAACGATAAATTGTTTA+GGG | - | chr3_4:65077643-65077662 | None:intergenic | 20.0% |
| !! | ATAGAAACGATAAATTGTTT+AGG | - | chr3_4:65077644-65077663 | None:intergenic | 20.0% |
| !! | ATGTAACAATGTTATAATCT+AGG | - | chr3_4:65077829-65077848 | None:intergenic | 20.0% |
| !!! | AGCTATAATTTTAAGGTTAT+TGG | - | chr3_4:65078194-65078213 | None:intergenic | 20.0% |
| !! | CTTAAAATTATAGCTGAATA+CGG | + | chr3_4:65078199-65078218 | Msa0514390:CDS | 20.0% |
| !! | AAAATTAAAATTGCAGAGTT+AGG | - | chr3_4:65078325-65078344 | None:intergenic | 20.0% |
| !! | AGTAAATATCTTATGAACTA+TGG | + | chr3_4:65076288-65076307 | Msa0514390:five_prime_UTR | 20.0% |
| !!! | CCATTTTAAATTGGATTTAT+AGG | - | chr3_4:65076641-65076660 | None:intergenic | 20.0% |
| !! | CCTATAAATCCAATTTAAAA+TGG | + | chr3_4:65076638-65076657 | Msa0514390:intron | 20.0% |
| !!! | AAATCCAATTTAAAATGGAA+AGG | + | chr3_4:65076643-65076662 | Msa0514390:intron | 20.0% |
| !! | TTGAAATTATGTAGTGTAAT+TGG | + | chr3_4:65076952-65076971 | Msa0514390:intron | 20.0% |
| !! | AATAGAGCACAAATTATATA+TGG | + | chr3_4:65077009-65077028 | Msa0514390:intron | 20.0% |
| !!! | AAATTTGTAACCAAACTTTT+TGG | - | chr3_4:65077168-65077187 | None:intergenic | 20.0% |
| !! | GTGCATATAATCAAAATATT+AGG | - | chr3_4:65077398-65077417 | None:intergenic | 20.0% |
| !! | GATATAAATATCCACAATAT+AGG | - | chr3_4:65077422-65077441 | None:intergenic | 20.0% |
| !! | TGCATTATTAAATTATCATG+AGG | - | chr3_4:65077527-65077546 | None:intergenic | 20.0% |
| !!! | AACATATTTTTTCAAGGAAA+TGG | + | chr3_4:65077566-65077585 | Msa0514390:intron | 20.0% |
| !! | TAGAAACGATAAATTGTTTA+GGG | - | chr3_4:65077643-65077662 | None:intergenic | 20.0% |
| !! | ATAGAAACGATAAATTGTTT+AGG | - | chr3_4:65077644-65077663 | None:intergenic | 20.0% |
| !! | ATGTAACAATGTTATAATCT+AGG | - | chr3_4:65077829-65077848 | None:intergenic | 20.0% |
| !!! | AGCTATAATTTTAAGGTTAT+TGG | - | chr3_4:65078194-65078213 | None:intergenic | 20.0% |
| !! | CTTAAAATTATAGCTGAATA+CGG | + | chr3_4:65078199-65078218 | Msa0514390:CDS | 20.0% |
| !! | AAAATTAAAATTGCAGAGTT+AGG | - | chr3_4:65078325-65078344 | None:intergenic | 20.0% |
| ! | AATCAAGACATACGAATTAT+TGG | - | chr3_4:65076441-65076460 | None:intergenic | 25.0% |
| ! | GAAAGACTTCTTAATTCTTA+AGG | + | chr3_4:65076494-65076513 | Msa0514390:intron | 25.0% |
| !! | AACTCCTTTCCATTTTAAAT+TGG | - | chr3_4:65076650-65076669 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTATAGGAATACC+AGG | + | chr3_4:65076747-65076766 | Msa0514390:intron | 25.0% |
| ! | ATGCATTTGAATCTTTATGA+TGG | + | chr3_4:65077062-65077081 | Msa0514390:intron | 25.0% |
| ! | TGCATTTGAATCTTTATGAT+GGG | + | chr3_4:65077063-65077082 | Msa0514390:intron | 25.0% |
| !! | TAGTATAATGAGACTGATTT+GGG | + | chr3_4:65077202-65077221 | Msa0514390:intron | 25.0% |
| !! | ATTATCATACAAGCAAGTTT+TGG | + | chr3_4:65077243-65077262 | Msa0514390:intron | 25.0% |
| !!! | GTTTTGGTTCATTTTTTTTC+TGG | + | chr3_4:65077259-65077278 | Msa0514390:intron | 25.0% |
| !! | AGTTCATTGGAATAATTTTG+AGG | + | chr3_4:65077296-65077315 | Msa0514390:intron | 25.0% |
| ! | ATAATCAAAATATTAGGGAC+TGG | - | chr3_4:65077392-65077411 | None:intergenic | 25.0% |
| ! | GGATATTTATATCTTAAGTG+AGG | + | chr3_4:65077429-65077448 | Msa0514390:intron | 25.0% |
| ! | AGAAACGATAAATTGTTTAG+GGG | - | chr3_4:65077642-65077661 | None:intergenic | 25.0% |
| ! | ATAGAAAATAAAAGGTCAGA+GGG | - | chr3_4:65077683-65077702 | None:intergenic | 25.0% |
| ! | TCTGAGTCATAGAAAATAAA+AGG | - | chr3_4:65077691-65077710 | None:intergenic | 25.0% |
| ! | GTGTTTAATTCATATTGTAC+AGG | + | chr3_4:65077909-65077928 | Msa0514390:intron | 25.0% |
| ! | AATGTTCTTGTAATGTATCT+CGG | - | chr3_4:65078098-65078117 | None:intergenic | 25.0% |
| ! | TTTAATCATGTTGTGTCTTA+TGG | + | chr3_4:65078127-65078146 | Msa0514390:intron | 25.0% |
| !! | CGTATTCAGCTATAATTTTA+AGG | - | chr3_4:65078201-65078220 | None:intergenic | 25.0% |
| ! | CACAGTTAATTATTACTACT+AGG | - | chr3_4:65078355-65078374 | None:intergenic | 25.0% |
| ! | AATCAAGACATACGAATTAT+TGG | - | chr3_4:65076441-65076460 | None:intergenic | 25.0% |
| ! | GAAAGACTTCTTAATTCTTA+AGG | + | chr3_4:65076494-65076513 | Msa0514390:intron | 25.0% |
| !! | AACTCCTTTCCATTTTAAAT+TGG | - | chr3_4:65076650-65076669 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTATAGGAATACC+AGG | + | chr3_4:65076747-65076766 | Msa0514390:intron | 25.0% |
| ! | ATGCATTTGAATCTTTATGA+TGG | + | chr3_4:65077062-65077081 | Msa0514390:intron | 25.0% |
| ! | TGCATTTGAATCTTTATGAT+GGG | + | chr3_4:65077063-65077082 | Msa0514390:intron | 25.0% |
| !! | TAGTATAATGAGACTGATTT+GGG | + | chr3_4:65077202-65077221 | Msa0514390:intron | 25.0% |
| !! | ATTATCATACAAGCAAGTTT+TGG | + | chr3_4:65077243-65077262 | Msa0514390:intron | 25.0% |
| !!! | GTTTTGGTTCATTTTTTTTC+TGG | + | chr3_4:65077259-65077278 | Msa0514390:intron | 25.0% |
| !! | AGTTCATTGGAATAATTTTG+AGG | + | chr3_4:65077296-65077315 | Msa0514390:intron | 25.0% |
| ! | ATAATCAAAATATTAGGGAC+TGG | - | chr3_4:65077392-65077411 | None:intergenic | 25.0% |
| ! | GGATATTTATATCTTAAGTG+AGG | + | chr3_4:65077429-65077448 | Msa0514390:intron | 25.0% |
| ! | AGAAACGATAAATTGTTTAG+GGG | - | chr3_4:65077642-65077661 | None:intergenic | 25.0% |
| ! | ATAGAAAATAAAAGGTCAGA+GGG | - | chr3_4:65077683-65077702 | None:intergenic | 25.0% |
| ! | TCTGAGTCATAGAAAATAAA+AGG | - | chr3_4:65077691-65077710 | None:intergenic | 25.0% |
| ! | GTGTTTAATTCATATTGTAC+AGG | + | chr3_4:65077909-65077928 | Msa0514390:intron | 25.0% |
| ! | AATGTTCTTGTAATGTATCT+CGG | - | chr3_4:65078098-65078117 | None:intergenic | 25.0% |
| ! | TTTAATCATGTTGTGTCTTA+TGG | + | chr3_4:65078127-65078146 | Msa0514390:intron | 25.0% |
| !! | CGTATTCAGCTATAATTTTA+AGG | - | chr3_4:65078201-65078220 | None:intergenic | 25.0% |
| ! | CACAGTTAATTATTACTACT+AGG | - | chr3_4:65078355-65078374 | None:intergenic | 25.0% |
| AATCAAGCACGACATTAATT+CGG | - | chr3_4:65076357-65076376 | None:intergenic | 30.0% | |
| AAGACATACGAATTATTGGA+AGG | - | chr3_4:65076437-65076456 | None:intergenic | 30.0% | |
| TTCTTAATTCTTAAGGTGCA+TGG | + | chr3_4:65076501-65076520 | Msa0514390:intron | 30.0% | |
| TGAAAAGTGATGATCAAACT+AGG | + | chr3_4:65076563-65076582 | Msa0514390:intron | 30.0% | |
| TATACTAGTAAGTAACTGCA+TGG | + | chr3_4:65076602-65076621 | Msa0514390:intron | 30.0% | |
| TAGATGTATGTTTAGATCTG+TGG | + | chr3_4:65076776-65076795 | Msa0514390:CDS | 30.0% | |
| !! | GATTAGTCTGTCAATTACTT+TGG | - | chr3_4:65076880-65076899 | None:intergenic | 30.0% |
| !!! | ATGTAGTGTAATTGGTTTTC+TGG | + | chr3_4:65076960-65076979 | Msa0514390:intron | 30.0% |
| GGGAAAACATTATTATTTGC+AGG | + | chr3_4:65077083-65077102 | Msa0514390:intron | 30.0% | |
| ACATTATTATTTGCAGGTTG+TGG | + | chr3_4:65077089-65077108 | Msa0514390:intron | 30.0% | |
| CTATCTTTGACCAAAAAGTT+TGG | + | chr3_4:65077155-65077174 | Msa0514390:intron | 30.0% | |
| CTAGTATAATGAGACTGATT+TGG | + | chr3_4:65077201-65077220 | Msa0514390:intron | 30.0% | |
| !!! | AACAGCAAGTTTTAGTTCAT+TGG | + | chr3_4:65077283-65077302 | Msa0514390:intron | 30.0% |
| !!! | ATTTTGAGGTCAATCATGTT+AGG | + | chr3_4:65077310-65077329 | Msa0514390:intron | 30.0% |
| ATAAACATGATGTTCTAGCA+AGG | - | chr3_4:65077366-65077385 | None:intergenic | 30.0% | |
| TTATATGCACACCTATATTG+TGG | + | chr3_4:65077408-65077427 | Msa0514390:intron | 30.0% | |
| TAGAAAATAAAAGGTCAGAG+GGG | - | chr3_4:65077682-65077701 | None:intergenic | 30.0% | |
| CATAGAAAATAAAAGGTCAG+AGG | - | chr3_4:65077684-65077703 | None:intergenic | 30.0% | |
| TCATAAGACTCTCCATTAAA+CGG | + | chr3_4:65077713-65077732 | Msa0514390:intron | 30.0% | |
| ATATTGTACAGGTTTCTTGA+CGG | + | chr3_4:65077920-65077939 | Msa0514390:intron | 30.0% | |
| CTTTCTCATTTGAACTGTAT+AGG | - | chr3_4:65077957-65077976 | None:intergenic | 30.0% | |
| AAATGAGAAAGTCTCAAGTA+TGG | + | chr3_4:65077966-65077985 | Msa0514390:CDS | 30.0% | |
| AATGAGAAAGTCTCAAGTAT+GGG | + | chr3_4:65077967-65077986 | Msa0514390:CDS | 30.0% | |
| ATGTTGTGTCTTATGGATTT+AGG | + | chr3_4:65078134-65078153 | Msa0514390:intron | 30.0% | |
| AACACTTCAATACATCATAG+TGG | - | chr3_4:65078276-65078295 | None:intergenic | 30.0% | |
| ! | CATATTGAAGCACATTTTCA+AGG | - | chr3_4:65078383-65078402 | None:intergenic | 30.0% |
| AATCAAGCACGACATTAATT+CGG | - | chr3_4:65076357-65076376 | None:intergenic | 30.0% | |
| AAGACATACGAATTATTGGA+AGG | - | chr3_4:65076437-65076456 | None:intergenic | 30.0% | |
| TTCTTAATTCTTAAGGTGCA+TGG | + | chr3_4:65076501-65076520 | Msa0514390:intron | 30.0% | |
| TGAAAAGTGATGATCAAACT+AGG | + | chr3_4:65076563-65076582 | Msa0514390:intron | 30.0% | |
| TATACTAGTAAGTAACTGCA+TGG | + | chr3_4:65076602-65076621 | Msa0514390:intron | 30.0% | |
| TAGATGTATGTTTAGATCTG+TGG | + | chr3_4:65076776-65076795 | Msa0514390:CDS | 30.0% | |
| !! | GATTAGTCTGTCAATTACTT+TGG | - | chr3_4:65076880-65076899 | None:intergenic | 30.0% |
| !!! | ATGTAGTGTAATTGGTTTTC+TGG | + | chr3_4:65076960-65076979 | Msa0514390:intron | 30.0% |
| GGGAAAACATTATTATTTGC+AGG | + | chr3_4:65077083-65077102 | Msa0514390:intron | 30.0% | |
| ACATTATTATTTGCAGGTTG+TGG | + | chr3_4:65077089-65077108 | Msa0514390:intron | 30.0% | |
| CTATCTTTGACCAAAAAGTT+TGG | + | chr3_4:65077155-65077174 | Msa0514390:intron | 30.0% | |
| CTAGTATAATGAGACTGATT+TGG | + | chr3_4:65077201-65077220 | Msa0514390:intron | 30.0% | |
| !!! | AACAGCAAGTTTTAGTTCAT+TGG | + | chr3_4:65077283-65077302 | Msa0514390:intron | 30.0% |
| !!! | ATTTTGAGGTCAATCATGTT+AGG | + | chr3_4:65077310-65077329 | Msa0514390:intron | 30.0% |
| ATAAACATGATGTTCTAGCA+AGG | - | chr3_4:65077366-65077385 | None:intergenic | 30.0% | |
| TTATATGCACACCTATATTG+TGG | + | chr3_4:65077408-65077427 | Msa0514390:intron | 30.0% | |
| TAGAAAATAAAAGGTCAGAG+GGG | - | chr3_4:65077682-65077701 | None:intergenic | 30.0% | |
| CATAGAAAATAAAAGGTCAG+AGG | - | chr3_4:65077684-65077703 | None:intergenic | 30.0% | |
| TCATAAGACTCTCCATTAAA+CGG | + | chr3_4:65077713-65077732 | Msa0514390:intron | 30.0% | |
| ATATTGTACAGGTTTCTTGA+CGG | + | chr3_4:65077920-65077939 | Msa0514390:intron | 30.0% | |
| CTTTCTCATTTGAACTGTAT+AGG | - | chr3_4:65077957-65077976 | None:intergenic | 30.0% | |
| AAATGAGAAAGTCTCAAGTA+TGG | + | chr3_4:65077966-65077985 | Msa0514390:CDS | 30.0% | |
| AATGAGAAAGTCTCAAGTAT+GGG | + | chr3_4:65077967-65077986 | Msa0514390:CDS | 30.0% | |
| ATGTTGTGTCTTATGGATTT+AGG | + | chr3_4:65078134-65078153 | Msa0514390:intron | 30.0% | |
| AACACTTCAATACATCATAG+TGG | - | chr3_4:65078276-65078295 | None:intergenic | 30.0% | |
| ! | CATATTGAAGCACATTTTCA+AGG | - | chr3_4:65078383-65078402 | None:intergenic | 30.0% |
| AGAAGACAAGAGCAATATAC+TGG | + | chr3_4:65076314-65076333 | Msa0514390:five_prime_UTR | 35.0% | |
| ! | TTGATTTGAGTTTGGTTTCG+CGG | + | chr3_4:65076371-65076390 | Msa0514390:five_prime_UTR | 35.0% |
| AGTAAGTAACTGCATGGTTA+TGG | + | chr3_4:65076608-65076627 | Msa0514390:intron | 35.0% | |
| ATGTTTAGATCTGTGGTCTA+TGG | + | chr3_4:65076783-65076802 | Msa0514390:CDS | 35.0% | |
| !! | TAATGAGACTGATTTGGGAA+TGG | + | chr3_4:65077207-65077226 | Msa0514390:intron | 35.0% |
| !! | AATGAGACTGATTTGGGAAT+GGG | + | chr3_4:65077208-65077227 | Msa0514390:intron | 35.0% |
| ATCATACTTGTGTTGCATCT+CGG | - | chr3_4:65077495-65077514 | None:intergenic | 35.0% | |
| ! | AAAAGGTGAGAGATTTTCAC+CGG | - | chr3_4:65077599-65077618 | None:intergenic | 35.0% |
| ! | TTTTGTACCACTTCATGGTA+AGG | - | chr3_4:65077804-65077823 | None:intergenic | 35.0% |
| ATGAGAAAGTCTCAAGTATG+GGG | + | chr3_4:65077968-65077987 | Msa0514390:CDS | 35.0% | |
| ! | ATTTAGGATGCCTATAACAG+TGG | + | chr3_4:65078150-65078169 | Msa0514390:intron | 35.0% |
| CCATCATAGATGACTCTAAT+AGG | - | chr3_4:65078247-65078266 | None:intergenic | 35.0% | |
| CCTATTAGAGTCATCTATGA+TGG | + | chr3_4:65078244-65078263 | Msa0514390:CDS | 35.0% | |
| ! | AGAGTCATCTATGATGGTTT+TGG | + | chr3_4:65078250-65078269 | Msa0514390:CDS | 35.0% |
| AGAAGACAAGAGCAATATAC+TGG | + | chr3_4:65076314-65076333 | Msa0514390:five_prime_UTR | 35.0% | |
| ! | TTGATTTGAGTTTGGTTTCG+CGG | + | chr3_4:65076371-65076390 | Msa0514390:five_prime_UTR | 35.0% |
| AGTAAGTAACTGCATGGTTA+TGG | + | chr3_4:65076608-65076627 | Msa0514390:intron | 35.0% | |
| ATGTTTAGATCTGTGGTCTA+TGG | + | chr3_4:65076783-65076802 | Msa0514390:CDS | 35.0% | |
| !! | TAATGAGACTGATTTGGGAA+TGG | + | chr3_4:65077207-65077226 | Msa0514390:intron | 35.0% |
| !! | AATGAGACTGATTTGGGAAT+GGG | + | chr3_4:65077208-65077227 | Msa0514390:intron | 35.0% |
| ATCATACTTGTGTTGCATCT+CGG | - | chr3_4:65077495-65077514 | None:intergenic | 35.0% | |
| ! | AAAAGGTGAGAGATTTTCAC+CGG | - | chr3_4:65077599-65077618 | None:intergenic | 35.0% |
| ! | TTTTGTACCACTTCATGGTA+AGG | - | chr3_4:65077804-65077823 | None:intergenic | 35.0% |
| ATGAGAAAGTCTCAAGTATG+GGG | + | chr3_4:65077968-65077987 | Msa0514390:CDS | 35.0% | |
| ! | ATTTAGGATGCCTATAACAG+TGG | + | chr3_4:65078150-65078169 | Msa0514390:intron | 35.0% |
| CCATCATAGATGACTCTAAT+AGG | - | chr3_4:65078247-65078266 | None:intergenic | 35.0% | |
| CCTATTAGAGTCATCTATGA+TGG | + | chr3_4:65078244-65078263 | Msa0514390:CDS | 35.0% | |
| ! | AGAGTCATCTATGATGGTTT+TGG | + | chr3_4:65078250-65078269 | Msa0514390:CDS | 35.0% |
| ! | TGTCGTGCTTGATTTGAGTT+TGG | + | chr3_4:65076363-65076382 | Msa0514390:five_prime_UTR | 40.0% |
| GTTATAGGAATACCAGGAGA+TGG | + | chr3_4:65076753-65076772 | Msa0514390:intron | 40.0% | |
| AACATACATCTACCATCTCC+TGG | - | chr3_4:65076768-65076787 | None:intergenic | 40.0% | |
| ! | ATCTGCAAGTTCTTTTTGCC+TGG | - | chr3_4:65076847-65076866 | None:intergenic | 40.0% |
| !!! | GTGTAATTGGTTTTCTGGTG+TGG | + | chr3_4:65076965-65076984 | Msa0514390:intron | 40.0% |
| ! | TCAAGGAAATGGATTCTCTC+CGG | + | chr3_4:65077577-65077596 | Msa0514390:intron | 40.0% |
| TCCATTAAACGGAGATGATC+TGG | + | chr3_4:65077724-65077743 | Msa0514390:intron | 40.0% | |
| ACCAGATCATCTCCGTTTAA+TGG | - | chr3_4:65077728-65077747 | None:intergenic | 40.0% | |
| CTGAATTCCTTACCATGAAG+TGG | + | chr3_4:65077794-65077813 | Msa0514390:intron | 40.0% | |
| ! | AGGCATTTTGTACCACTTCA+TGG | - | chr3_4:65077809-65077828 | None:intergenic | 40.0% |
| ATCTCGGTCTTCTTAACACT+GGG | - | chr3_4:65078082-65078101 | None:intergenic | 40.0% | |
| TATCTCGGTCTTCTTAACAC+TGG | - | chr3_4:65078083-65078102 | None:intergenic | 40.0% | |
| AATTATAGCTGAATACGGCC+AGG | + | chr3_4:65078204-65078223 | Msa0514390:CDS | 40.0% | |
| ! | TGTCGTGCTTGATTTGAGTT+TGG | + | chr3_4:65076363-65076382 | Msa0514390:five_prime_UTR | 40.0% |
| GTTATAGGAATACCAGGAGA+TGG | + | chr3_4:65076753-65076772 | Msa0514390:intron | 40.0% | |
| AACATACATCTACCATCTCC+TGG | - | chr3_4:65076768-65076787 | None:intergenic | 40.0% | |
| ! | ATCTGCAAGTTCTTTTTGCC+TGG | - | chr3_4:65076847-65076866 | None:intergenic | 40.0% |
| !!! | GTGTAATTGGTTTTCTGGTG+TGG | + | chr3_4:65076965-65076984 | Msa0514390:intron | 40.0% |
| ! | TCAAGGAAATGGATTCTCTC+CGG | + | chr3_4:65077577-65077596 | Msa0514390:intron | 40.0% |
| TCCATTAAACGGAGATGATC+TGG | + | chr3_4:65077724-65077743 | Msa0514390:intron | 40.0% | |
| ACCAGATCATCTCCGTTTAA+TGG | - | chr3_4:65077728-65077747 | None:intergenic | 40.0% | |
| CTGAATTCCTTACCATGAAG+TGG | + | chr3_4:65077794-65077813 | Msa0514390:intron | 40.0% | |
| ! | AGGCATTTTGTACCACTTCA+TGG | - | chr3_4:65077809-65077828 | None:intergenic | 40.0% |
| ATCTCGGTCTTCTTAACACT+GGG | - | chr3_4:65078082-65078101 | None:intergenic | 40.0% | |
| TATCTCGGTCTTCTTAACAC+TGG | - | chr3_4:65078083-65078102 | None:intergenic | 40.0% | |
| AATTATAGCTGAATACGGCC+AGG | + | chr3_4:65078204-65078223 | Msa0514390:CDS | 40.0% | |
| ! | TCTTTTTGCCTGGTGAGACT+TGG | - | chr3_4:65076837-65076856 | None:intergenic | 45.0% |
| TTGTGGACGAGTTCATCAAG+AGG | + | chr3_4:65077106-65077125 | Msa0514390:CDS | 45.0% | |
| AGAGGAGAGTAGACACTGAA+TGG | + | chr3_4:65077124-65077143 | Msa0514390:CDS | 45.0% | |
| CGATAAATTGTTTAGGGGCG+TGG | - | chr3_4:65077637-65077656 | None:intergenic | 45.0% | |
| AGAAAGTCTCAAGTATGGGG+AGG | + | chr3_4:65077971-65077990 | Msa0514390:CDS | 45.0% | |
| TGCTGCATGACCACTGTTAT+AGG | - | chr3_4:65078163-65078182 | None:intergenic | 45.0% | |
| GATTCTCCTTTCCATACTCC+TGG | - | chr3_4:65078225-65078244 | None:intergenic | 45.0% | |
| ! | TCTTTTTGCCTGGTGAGACT+TGG | - | chr3_4:65076837-65076856 | None:intergenic | 45.0% |
| TTGTGGACGAGTTCATCAAG+AGG | + | chr3_4:65077106-65077125 | Msa0514390:CDS | 45.0% | |
| AGAGGAGAGTAGACACTGAA+TGG | + | chr3_4:65077124-65077143 | Msa0514390:CDS | 45.0% | |
| CGATAAATTGTTTAGGGGCG+TGG | - | chr3_4:65077637-65077656 | None:intergenic | 45.0% | |
| AGAAAGTCTCAAGTATGGGG+AGG | + | chr3_4:65077971-65077990 | Msa0514390:CDS | 45.0% | |
| TGCTGCATGACCACTGTTAT+AGG | - | chr3_4:65078163-65078182 | None:intergenic | 45.0% | |
| GATTCTCCTTTCCATACTCC+TGG | - | chr3_4:65078225-65078244 | None:intergenic | 45.0% | |
| ! | GTTTGGAGGAAGTGTGATGC+AGG | + | chr3_4:65076158-65076177 | Msa0514390:five_prime_UTR | 50.0% |
| ! | TTTTGCCTGGTGAGACTTGG+AGG | - | chr3_4:65076834-65076853 | None:intergenic | 50.0% |
| GGATTGTCTCGCGGAAGAAA+AGG | - | chr3_4:65077616-65077635 | None:intergenic | 50.0% | |
| TGCGACGACATGAGAAGTTC+AGG | - | chr3_4:65078001-65078020 | None:intergenic | 50.0% | |
| ! | ATACGGCCAGGAGTATGGAA+AGG | + | chr3_4:65078216-65078235 | Msa0514390:CDS | 50.0% |
| ! | GTTTGGAGGAAGTGTGATGC+AGG | + | chr3_4:65076158-65076177 | Msa0514390:five_prime_UTR | 50.0% |
| ! | TTTTGCCTGGTGAGACTTGG+AGG | - | chr3_4:65076834-65076853 | None:intergenic | 50.0% |
| GGATTGTCTCGCGGAAGAAA+AGG | - | chr3_4:65077616-65077635 | None:intergenic | 50.0% | |
| TGCGACGACATGAGAAGTTC+AGG | - | chr3_4:65078001-65078020 | None:intergenic | 50.0% | |
| ! | ATACGGCCAGGAGTATGGAA+AGG | + | chr3_4:65078216-65078235 | Msa0514390:CDS | 50.0% |
| TATGGTGCCTGCCTCAGAAG+AGG | + | chr3_4:65076801-65076820 | Msa0514390:CDS | 55.0% | |
| ATGGTGCCTGCCTCAGAAGA+GGG | + | chr3_4:65076802-65076821 | Msa0514390:CDS | 55.0% | |
| GCTGAATACGGCCAGGAGTA+TGG | + | chr3_4:65078211-65078230 | Msa0514390:CDS | 55.0% | |
| TATGGTGCCTGCCTCAGAAG+AGG | + | chr3_4:65076801-65076820 | Msa0514390:CDS | 55.0% | |
| ATGGTGCCTGCCTCAGAAGA+GGG | + | chr3_4:65076802-65076821 | Msa0514390:CDS | 55.0% | |
| GCTGAATACGGCCAGGAGTA+TGG | + | chr3_4:65078211-65078230 | Msa0514390:CDS | 55.0% | |
| TGGTGCCTGCCTCAGAAGAG+GGG | + | chr3_4:65076803-65076822 | Msa0514390:CDS | 60.0% | |
| ACCCACCTCCAAGTCTCACC+AGG | + | chr3_4:65076826-65076845 | Msa0514390:CDS | 60.0% | |
| GCCTGGTGAGACTTGGAGGT+GGG | - | chr3_4:65076830-65076849 | None:intergenic | 60.0% | |
| TGCCTGGTGAGACTTGGAGG+TGG | - | chr3_4:65076831-65076850 | None:intergenic | 60.0% | |
| ! | TAGGGGCGTGGATTGTCTCG+CGG | - | chr3_4:65077625-65077644 | None:intergenic | 60.0% |
| TGGTGCCTGCCTCAGAAGAG+GGG | + | chr3_4:65076803-65076822 | Msa0514390:CDS | 60.0% | |
| ACCCACCTCCAAGTCTCACC+AGG | + | chr3_4:65076826-65076845 | Msa0514390:CDS | 60.0% | |
| GCCTGGTGAGACTTGGAGGT+GGG | - | chr3_4:65076830-65076849 | None:intergenic | 60.0% | |
| TGCCTGGTGAGACTTGGAGG+TGG | - | chr3_4:65076831-65076850 | None:intergenic | 60.0% | |
| ! | TAGGGGCGTGGATTGTCTCG+CGG | - | chr3_4:65077625-65077644 | None:intergenic | 60.0% |
| !! | TGGGTCCCCTCTTCTGAGGC+AGG | - | chr3_4:65076811-65076830 | None:intergenic | 65.0% |
| GAGGTGGGTCCCCTCTTCTG+AGG | - | chr3_4:65076815-65076834 | None:intergenic | 65.0% | |
| !! | TGGGTCCCCTCTTCTGAGGC+AGG | - | chr3_4:65076811-65076830 | None:intergenic | 65.0% |
| GAGGTGGGTCCCCTCTTCTG+AGG | - | chr3_4:65076815-65076834 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 65076154 | 65078416 | 65076154 | ID=Msa0514390;Name=Msa0514390 |
| chr3_4 | mRNA | 65076154 | 65078416 | 65076154 | ID=Msa0514390-mRNA-1;Parent=Msa0514390;Name=Msa0514390-mRNA-1;_AED=0.19;_eAED=0.19;_QI=248|1|1|1|1|1|5|113|151 |
| chr3_4 | exon | 65076154 | 65076447 | 65076154 | ID=Msa0514390-mRNA-1:exon:16471;Parent=Msa0514390-mRNA-1 |
| chr3_4 | exon | 65076760 | 65076881 | 65076760 | ID=Msa0514390-mRNA-1:exon:16472;Parent=Msa0514390-mRNA-1 |
| chr3_4 | exon | 65077105 | 65077145 | 65077105 | ID=Msa0514390-mRNA-1:exon:16473;Parent=Msa0514390-mRNA-1 |
| chr3_4 | exon | 65077931 | 65078029 | 65077931 | ID=Msa0514390-mRNA-1:exon:16474;Parent=Msa0514390-mRNA-1 |
| chr3_4 | exon | 65078156 | 65078416 | 65078156 | ID=Msa0514390-mRNA-1:exon:16475;Parent=Msa0514390-mRNA-1 |
| chr3_4 | five_prime_UTR | 65076154 | 65076401 | 65076154 | ID=Msa0514390-mRNA-1:five_prime_utr;Parent=Msa0514390-mRNA-1 |
| chr3_4 | CDS | 65076402 | 65076447 | 65076402 | ID=Msa0514390-mRNA-1:cds;Parent=Msa0514390-mRNA-1 |
| chr3_4 | CDS | 65076760 | 65076881 | 65076760 | ID=Msa0514390-mRNA-1:cds;Parent=Msa0514390-mRNA-1 |
| chr3_4 | CDS | 65077105 | 65077145 | 65077105 | ID=Msa0514390-mRNA-1:cds;Parent=Msa0514390-mRNA-1 |
| chr3_4 | CDS | 65077931 | 65078029 | 65077931 | ID=Msa0514390-mRNA-1:cds;Parent=Msa0514390-mRNA-1 |
| chr3_4 | CDS | 65078156 | 65078303 | 65078156 | ID=Msa0514390-mRNA-1:cds;Parent=Msa0514390-mRNA-1 |
| chr3_4 | three_prime_UTR | 65078304 | 65078416 | 65078304 | ID=Msa0514390-mRNA-1:three_prime_utr;Parent=Msa0514390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
