AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0151690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151690 MtrunA17_Chr1g0160381 73.203 153 41 0 1 153 5 157 1.02e-82 240
Msa0151690 MtrunA17_Chr1g0160371 71.895 153 43 0 1 153 1 153 7.95e-80 233
Msa0151690 MtrunA17_Chr1g0160391 61.392 158 56 2 1 153 1 158 1.49e-62 189
Msa0151690 MtrunA17_Chr1g0160351 76.344 93 22 0 61 153 2 94 3.93e-47 148
Msa0151690 MtrunA17_Chr8g0355761 44.079 152 82 2 1 151 1 150 3.53e-43 140
Msa0151690 MtrunA17_Chr8g0355781 45.395 152 80 2 1 151 1 150 1.10e-42 139
Msa0151690 MtrunA17_Chr8g0355721 44.371 151 81 2 1 150 1 149 1.08e-41 136
Msa0151690 MtrunA17_Chr8g0355661 45.395 152 79 3 1 151 1 149 1.42e-41 136
Msa0151690 MtrunA17_Chr8g0355811 42.105 152 84 3 1 151 1 149 5.43e-41 134
Msa0151690 MtrunA17_Chr8g0355741 43.421 152 83 2 1 151 1 150 6.89e-41 134
Msa0151690 MtrunA17_Chr8g0355821 40.132 152 87 3 1 151 1 149 1.48e-38 128
Msa0151690 MtrunA17_Chr8g0355771 40.132 152 87 3 1 151 1 149 2.29e-38 127
Msa0151690 MtrunA17_Chr8g0355641 42.763 152 84 2 1 151 1 150 5.70e-38 127
Msa0151690 MtrunA17_Chr8g0355791 41.447 152 85 3 1 151 1 149 8.46e-38 126
Msa0151690 MtrunA17_Chr8g0355801 39.474 152 88 3 1 151 1 149 1.29e-37 125
Msa0151690 MtrunA17_Chr8g0339261 35.256 156 95 4 1 153 1 153 7.17e-28 101
Msa0151690 MtrunA17_Chr1g0160801 37.762 143 79 4 11 151 11 145 2.56e-24 92.0
Msa0151690 MtrunA17_Chr5g0413971 28.105 153 103 5 1 150 3 151 9.72e-13 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151690 AT5G28010.1 39.610 154 89 3 2 153 14 165 2.07e-33 115
Msa0151690 AT5G28010.2 39.610 154 89 3 2 153 14 165 2.07e-33 115
Msa0151690 AT1G70890.1 37.013 154 93 3 2 153 6 157 1.90e-31 110
Msa0151690 AT1G70840.1 37.013 154 93 3 2 153 19 170 1.86e-30 108
Msa0151690 AT1G70830.5 37.013 154 93 3 2 153 21 172 5.32e-30 107
Msa0151690 AT1G70830.3 37.013 154 93 3 2 153 21 172 8.35e-30 107
Msa0151690 AT1G70830.2 37.013 154 93 3 2 153 21 172 4.02e-29 107
Msa0151690 AT5G28000.1 35.714 154 95 3 2 153 12 163 9.85e-29 103
Msa0151690 AT1G70830.1 37.013 154 93 3 2 153 21 172 1.50e-28 107
Msa0151690 AT1G70830.1 36.364 154 94 3 2 153 183 334 4.86e-27 103
Msa0151690 AT1G70850.2 35.526 152 94 3 2 151 8 157 5.83e-28 103
Msa0151690 AT1G70830.4 36.364 154 94 3 2 153 136 287 1.68e-27 103
Msa0151690 AT1G70830.4 37.500 96 57 2 59 153 32 125 1.23e-15 72.4
Msa0151690 AT1G70850.3 35.526 152 94 3 2 151 8 157 2.64e-27 103
Msa0151690 AT1G70850.3 35.664 143 88 3 13 153 175 315 8.28e-26 100
Msa0151690 AT1G70850.1 35.526 152 94 3 2 151 8 157 2.64e-27 103
Msa0151690 AT1G70850.1 35.664 143 88 3 13 153 175 315 8.28e-26 100
Msa0151690 AT1G23130.1 32.026 153 101 2 2 153 9 159 2.36e-25 95.1
Msa0151690 AT1G14930.1 34.211 152 96 3 1 151 1 149 7.45e-24 91.3
Msa0151690 AT1G35260.1 31.034 145 95 3 9 151 8 149 1.94e-23 90.1
Msa0151690 AT1G70880.1 30.519 154 103 3 2 153 7 158 3.97e-22 87.0
Msa0151690 AT1G70870.1 33.775 151 86 3 1 151 1 137 4.43e-22 86.3
Msa0151690 AT1G14950.1 32.895 152 98 3 1 151 1 149 1.35e-21 85.5
Msa0151690 AT1G24020.1 34.416 154 94 5 1 151 1 150 3.18e-21 84.3
Msa0151690 AT1G24020.2 34.416 154 94 5 1 151 1 150 3.18e-21 84.3
Msa0151690 AT4G14060.1 31.579 152 100 3 1 151 1 149 5.77e-20 81.3
Msa0151690 AT2G01520.1 31.579 152 100 3 1 151 1 149 6.36e-20 80.9
Msa0151690 AT1G23120.1 31.250 144 93 3 10 153 10 147 1.31e-19 80.1
Msa0151690 AT1G23120.2 31.818 154 97 4 2 153 50 197 1.77e-19 80.9
Msa0151690 AT1G14960.1 30.921 152 101 3 1 151 1 149 1.18e-18 77.8
Msa0151690 AT1G30990.1 30.263 152 101 3 1 151 1 148 1.82e-18 77.4
Msa0151690 AT4G23670.1 32.450 151 98 3 1 150 1 148 2.76e-18 76.6
Msa0151690 AT2G01530.1 30.921 152 101 3 1 151 1 149 2.24e-17 74.3
Msa0151690 AT1G14940.1 28.947 152 104 3 1 151 1 149 9.69e-17 72.8
Msa0151690 AT4G23680.1 30.464 151 101 3 1 150 1 148 1.63e-16 72.0
Msa0151690 AT3G26450.1 29.412 153 103 4 1 151 1 150 3.47e-16 71.2
Msa0151690 AT1G35310.1 28.169 142 98 3 13 153 12 150 4.43e-16 70.9
Msa0151690 AT3G26460.1 29.412 153 103 4 1 151 1 150 1.17e-14 67.4

Find 30 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACTTATTAGATAATTTA+TGG 0.124226 1_4:+13977872 Msa0151690:three_prime_UTR
ATTGCCTGCAAAATAATTTA+TGG 0.170218 1_4:+13977948 Msa0151690:three_prime_UTR
GAAAAGTCTAAGTATGAATT+AGG 0.290488 1_4:-13977760 None:intergenic
TGAGAATTACAAGAGTTTAA+AGG 0.306517 1_4:+13977642 Msa0151690:CDS
TGTATGTCATTAGAGATATT+AGG 0.397516 1_4:-13976688 None:intergenic
ATCAAATATAGCCTCTTTGA+TGG 0.402321 1_4:+13977610 Msa0151690:CDS
AAACACTGGGAATATACAAT+AGG 0.430950 1_4:+13976757 Msa0151690:CDS
AATATTAGAGAGCAGAGAAA+TGG 0.450933 1_4:+13976576 Msa0151690:exon
AACAAAGACGAAGTGTGTTA+TGG 0.451796 1_4:+13977839 Msa0151690:three_prime_UTR
CTAGATTGCATCAAGGTGAC+TGG 0.494979 1_4:+13976716 Msa0151690:CDS
AGCAGAGAAATGGCTTTAAG+TGG 0.497628 1_4:+13976586 Msa0151690:exon
ATGGTGGTGGGATTGTGAAA+TGG 0.519799 1_4:+13977692 Msa0151690:CDS
AATATTACAAGTGATTGATA+AGG 0.525571 1_4:+13977666 Msa0151690:CDS
ACATTATAAAACTTAGCAGC+TGG 0.552667 1_4:-13976640 None:intergenic
ATGTTGGTTCTGTCAAACAC+TGG 0.553560 1_4:+13976743 Msa0151690:CDS
CAACATTGTATCGAGAGAGT+TGG 0.565217 1_4:+13978028 Msa0151690:three_prime_UTR
TCAAATATAGCCTCTTTGAT+GGG 0.565633 1_4:+13977611 Msa0151690:CDS
CAAGGTGACTGGGAAAATGT+TGG 0.574551 1_4:+13976727 Msa0151690:CDS
AATTGATGCTCATATTGTCA+TGG 0.580062 1_4:+13977801 Msa0151690:CDS
ATTGATAAGGAACATGGTGG+TGG 0.583626 1_4:+13977679 Msa0151690:CDS
CAAGTGATTGATAAGGAACA+TGG 0.604255 1_4:+13977673 Msa0151690:CDS
TAGCCTCTTTGATGGGAACG+TGG 0.604910 1_4:+13977618 Msa0151690:CDS
TGTTGGTTCTGTCAAACACT+GGG 0.608753 1_4:+13976744 Msa0151690:CDS
TTGATAAGGAACATGGTGGT+GGG 0.609638 1_4:+13977680 Msa0151690:CDS
CACCCACGTTCCCATCAAAG+AGG 0.610559 1_4:-13977621 None:intergenic
TAGATTGCATCAAGGTGACT+GGG 0.615312 1_4:+13976717 Msa0151690:CDS
CATGTAGCTAGATTGCATCA+AGG 0.615345 1_4:+13976709 Msa0151690:CDS
GCAGAGAAATGGCTTTAAGT+GGG 0.628837 1_4:+13976587 Msa0151690:exon
AGCCTCTTTGATGGGAACGT+GGG 0.641629 1_4:+13977619 Msa0151690:CDS
GTGATTGATAAGGAACATGG+TGG 0.814323 1_4:+13977676 Msa0151690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCCTATTAAAAAAAAATA+CGG - chr1_4:13976995-13977014 None:intergenic 10.0%
!!! AAATTTTGAATATAAGTATT+AGG - chr1_4:13977420-13977439 None:intergenic 10.0%
!! ATTACTTATTAGATAATTTA+TGG + chr1_4:13977872-13977891 Msa0151690:three_prime_UTR 10.0%
!! TTTCCTATTAAAAAAAAATA+CGG - chr1_4:13976995-13977014 None:intergenic 10.0%
!!! AAATTTTGAATATAAGTATT+AGG - chr1_4:13977420-13977439 None:intergenic 10.0%
!! ATTACTTATTAGATAATTTA+TGG + chr1_4:13977872-13977891 Msa0151690:three_prime_UTR 10.0%
!! TATACAATAGGTAATAATTA+AGG + chr1_4:13976769-13976788 Msa0151690:intron 15.0%
!!! AAAAAAAATACGGATTTTAT+CGG - chr1_4:13976985-13977004 None:intergenic 15.0%
!!! AATCCGTATTTTTTTTTAAT+AGG + chr1_4:13976989-13977008 Msa0151690:intron 15.0%
!! ATAAATAAACTCAAAAGTTA+TGG - chr1_4:13977330-13977349 None:intergenic 15.0%
!! TATACAATAGGTAATAATTA+AGG + chr1_4:13976769-13976788 Msa0151690:intron 15.0%
!!! AAAAAAAATACGGATTTTAT+CGG - chr1_4:13976985-13977004 None:intergenic 15.0%
!!! AATCCGTATTTTTTTTTAAT+AGG + chr1_4:13976989-13977008 Msa0151690:intron 15.0%
!! ATAAATAAACTCAAAAGTTA+TGG - chr1_4:13977330-13977349 None:intergenic 15.0%
!!! AAAAAAATACGGATTTTATC+GGG - chr1_4:13976984-13977003 None:intergenic 20.0%
!! AATAAATACATAGAAACTAG+AGG - chr1_4:13977483-13977502 None:intergenic 20.0%
!! AATATTACAAGTGATTGATA+AGG + chr1_4:13977666-13977685 Msa0151690:CDS 20.0%
!!! TAACTTTTATGTTTGAAAGT+TGG + chr1_4:13977925-13977944 Msa0151690:three_prime_UTR 20.0%
!!! AAAAAAATACGGATTTTATC+GGG - chr1_4:13976984-13977003 None:intergenic 20.0%
!! AATAAATACATAGAAACTAG+AGG - chr1_4:13977483-13977502 None:intergenic 20.0%
!! AATATTACAAGTGATTGATA+AGG + chr1_4:13977666-13977685 Msa0151690:CDS 20.0%
!!! TAACTTTTATGTTTGAAAGT+TGG + chr1_4:13977925-13977944 Msa0151690:three_prime_UTR 20.0%
! TGTATGTCATTAGAGATATT+AGG - chr1_4:13976691-13976710 None:intergenic 25.0%
! CATAGATGTAGGATATTTAA+AGG - chr1_4:13976827-13976846 None:intergenic 25.0%
! TGGATGAGAACTATATATAA+GGG - chr1_4:13976859-13976878 None:intergenic 25.0%
! TTGGATGAGAACTATATATA+AGG - chr1_4:13976860-13976879 None:intergenic 25.0%
! CAATAATCACTAAACATCAT+TGG - chr1_4:13976879-13976898 None:intergenic 25.0%
!!! ATATTTTTTTGTTAACCCTC+CGG - chr1_4:13977259-13977278 None:intergenic 25.0%
!!! TTATTTTTTTTCCTTCTGCA+AGG - chr1_4:13977546-13977565 None:intergenic 25.0%
! TGAGAATTACAAGAGTTTAA+AGG + chr1_4:13977642-13977661 Msa0151690:CDS 25.0%
! GAAAAGTCTAAGTATGAATT+AGG - chr1_4:13977763-13977782 None:intergenic 25.0%
! ATTGCCTGCAAAATAATTTA+TGG + chr1_4:13977948-13977967 Msa0151690:three_prime_UTR 25.0%
!!! GAAACCATAAATTATTTTGC+AGG - chr1_4:13977955-13977974 None:intergenic 25.0%
! TTTCTTTACCTTCAAAAACT+AGG + chr1_4:13977971-13977990 Msa0151690:three_prime_UTR 25.0%
!!! CTTGAGTTTTATTTCTAGTA+TGG + chr1_4:13978077-13978096 Msa0151690:three_prime_UTR 25.0%
!!! ATTCGATTTTTTACACAAGT+TGG - chr1_4:13978104-13978123 None:intergenic 25.0%
! TGTATGTCATTAGAGATATT+AGG - chr1_4:13976691-13976710 None:intergenic 25.0%
! CATAGATGTAGGATATTTAA+AGG - chr1_4:13976827-13976846 None:intergenic 25.0%
! TGGATGAGAACTATATATAA+GGG - chr1_4:13976859-13976878 None:intergenic 25.0%
! TTGGATGAGAACTATATATA+AGG - chr1_4:13976860-13976879 None:intergenic 25.0%
! CAATAATCACTAAACATCAT+TGG - chr1_4:13976879-13976898 None:intergenic 25.0%
!!! ATATTTTTTTGTTAACCCTC+CGG - chr1_4:13977259-13977278 None:intergenic 25.0%
!!! TTATTTTTTTTCCTTCTGCA+AGG - chr1_4:13977546-13977565 None:intergenic 25.0%
! TGAGAATTACAAGAGTTTAA+AGG + chr1_4:13977642-13977661 Msa0151690:CDS 25.0%
! GAAAAGTCTAAGTATGAATT+AGG - chr1_4:13977763-13977782 None:intergenic 25.0%
! ATTGCCTGCAAAATAATTTA+TGG + chr1_4:13977948-13977967 Msa0151690:three_prime_UTR 25.0%
!!! GAAACCATAAATTATTTTGC+AGG - chr1_4:13977955-13977974 None:intergenic 25.0%
! TTTCTTTACCTTCAAAAACT+AGG + chr1_4:13977971-13977990 Msa0151690:three_prime_UTR 25.0%
!!! CTTGAGTTTTATTTCTAGTA+TGG + chr1_4:13978077-13978096 Msa0151690:three_prime_UTR 25.0%
!!! ATTCGATTTTTTACACAAGT+TGG - chr1_4:13978104-13978123 None:intergenic 25.0%
AATATTAGAGAGCAGAGAAA+TGG + chr1_4:13976576-13976595 Msa0151690:exon 30.0%
ACATTATAAAACTTAGCAGC+TGG - chr1_4:13976643-13976662 None:intergenic 30.0%
AAACACTGGGAATATACAAT+AGG + chr1_4:13976757-13976776 Msa0151690:CDS 30.0%
AGATGTAGGATATTTAAAGG+AGG - chr1_4:13976824-13976843 None:intergenic 30.0%
GGATCAAATTACATAGATGT+AGG - chr1_4:13976838-13976857 None:intergenic 30.0%
TCTACAAAGTAGATGTACAA+AGG + chr1_4:13977041-13977060 Msa0151690:intron 30.0%
TAGTAATTCAGAGTTTGATG+TGG - chr1_4:13977216-13977235 None:intergenic 30.0%
ACATCAAACTCTGAATTACT+AGG + chr1_4:13977215-13977234 Msa0151690:intron 30.0%
CATCAAACTCTGAATTACTA+GGG + chr1_4:13977216-13977235 Msa0151690:intron 30.0%
AATAATTGTCATCGCAAAAC+AGG + chr1_4:13977373-13977392 Msa0151690:intron 30.0%
ATCAAATATAGCCTCTTTGA+TGG + chr1_4:13977610-13977629 Msa0151690:CDS 30.0%
TCAAATATAGCCTCTTTGAT+GGG + chr1_4:13977611-13977630 Msa0151690:CDS 30.0%
! ATACTTAGACTTTTCTGCAA+AGG + chr1_4:13977768-13977787 Msa0151690:CDS 30.0%
AATTGATGCTCATATTGTCA+TGG + chr1_4:13977801-13977820 Msa0151690:CDS 30.0%
! ATCACAACATTTTGCCTTTA+CGG - chr1_4:13978001-13978020 None:intergenic 30.0%
AATATTAGAGAGCAGAGAAA+TGG + chr1_4:13976576-13976595 Msa0151690:exon 30.0%
ACATTATAAAACTTAGCAGC+TGG - chr1_4:13976643-13976662 None:intergenic 30.0%
AAACACTGGGAATATACAAT+AGG + chr1_4:13976757-13976776 Msa0151690:CDS 30.0%
AGATGTAGGATATTTAAAGG+AGG - chr1_4:13976824-13976843 None:intergenic 30.0%
GGATCAAATTACATAGATGT+AGG - chr1_4:13976838-13976857 None:intergenic 30.0%
TCTACAAAGTAGATGTACAA+AGG + chr1_4:13977041-13977060 Msa0151690:intron 30.0%
TAGTAATTCAGAGTTTGATG+TGG - chr1_4:13977216-13977235 None:intergenic 30.0%
ACATCAAACTCTGAATTACT+AGG + chr1_4:13977215-13977234 Msa0151690:intron 30.0%
CATCAAACTCTGAATTACTA+GGG + chr1_4:13977216-13977235 Msa0151690:intron 30.0%
AATAATTGTCATCGCAAAAC+AGG + chr1_4:13977373-13977392 Msa0151690:intron 30.0%
ATCAAATATAGCCTCTTTGA+TGG + chr1_4:13977610-13977629 Msa0151690:CDS 30.0%
TCAAATATAGCCTCTTTGAT+GGG + chr1_4:13977611-13977630 Msa0151690:CDS 30.0%
! ATACTTAGACTTTTCTGCAA+AGG + chr1_4:13977768-13977787 Msa0151690:CDS 30.0%
AATTGATGCTCATATTGTCA+TGG + chr1_4:13977801-13977820 Msa0151690:CDS 30.0%
! ATCACAACATTTTGCCTTTA+CGG - chr1_4:13978001-13978020 None:intergenic 30.0%
! AAAATACGGATTTTATCGGG+AGG - chr1_4:13976981-13977000 None:intergenic 35.0%
TCCCATTCATAAAAAGGACA+GGG + chr1_4:13977151-13977170 Msa0151690:intron 35.0%
TGGAAATGGTTTCTTGGTAA+AGG - chr1_4:13977187-13977206 None:intergenic 35.0%
TAATTCAGAGTTTGATGTGG+TGG - chr1_4:13977213-13977232 None:intergenic 35.0%
CAAGTGATTGATAAGGAACA+TGG + chr1_4:13977673-13977692 Msa0151690:CDS 35.0%
AACAAAGACGAAGTGTGTTA+TGG + chr1_4:13977839-13977858 Msa0151690:three_prime_UTR 35.0%
AAAAACTAGGTATGCCGTAA+AGG + chr1_4:13977984-13978003 Msa0151690:three_prime_UTR 35.0%
! AAAATACGGATTTTATCGGG+AGG - chr1_4:13976981-13977000 None:intergenic 35.0%
TCCCATTCATAAAAAGGACA+GGG + chr1_4:13977151-13977170 Msa0151690:intron 35.0%
TGGAAATGGTTTCTTGGTAA+AGG - chr1_4:13977187-13977206 None:intergenic 35.0%
TAATTCAGAGTTTGATGTGG+TGG - chr1_4:13977213-13977232 None:intergenic 35.0%
CAAGTGATTGATAAGGAACA+TGG + chr1_4:13977673-13977692 Msa0151690:CDS 35.0%
AACAAAGACGAAGTGTGTTA+TGG + chr1_4:13977839-13977858 Msa0151690:three_prime_UTR 35.0%
AAAAACTAGGTATGCCGTAA+AGG + chr1_4:13977984-13978003 Msa0151690:three_prime_UTR 35.0%
!! AGCAGAGAAATGGCTTTAAG+TGG + chr1_4:13976586-13976605 Msa0151690:exon 40.0%
!! GCAGAGAAATGGCTTTAAGT+GGG + chr1_4:13976587-13976606 Msa0151690:exon 40.0%
CATGTAGCTAGATTGCATCA+AGG + chr1_4:13976709-13976728 Msa0151690:CDS 40.0%
TAGATTGCATCAAGGTGACT+GGG + chr1_4:13976717-13976736 Msa0151690:CDS 40.0%
!! ATGTTGGTTCTGTCAAACAC+TGG + chr1_4:13976743-13976762 Msa0151690:CDS 40.0%
!! TGTTGGTTCTGTCAAACACT+GGG + chr1_4:13976744-13976763 Msa0151690:CDS 40.0%
GTGATTATTGAGCTTTCCCT+AGG + chr1_4:13976889-13976908 Msa0151690:intron 40.0%
TGCACCTCCCATTCATAAAA+AGG + chr1_4:13977145-13977164 Msa0151690:intron 40.0%
! CTGTCCTTTTTATGAATGGG+AGG - chr1_4:13977152-13977171 None:intergenic 40.0%
CTCCCATTCATAAAAAGGAC+AGG + chr1_4:13977150-13977169 Msa0151690:intron 40.0%
! GCCCTGTCCTTTTTATGAAT+GGG - chr1_4:13977155-13977174 None:intergenic 40.0%
! AGCCCTGTCCTTTTTATGAA+TGG - chr1_4:13977156-13977175 None:intergenic 40.0%
! TGGTCTTGGAAATGGTTTCT+TGG - chr1_4:13977193-13977212 None:intergenic 40.0%
! TGTTAACCCTCCGGTTTTTA+GGG - chr1_4:13977250-13977269 None:intergenic 40.0%
! TTGTTAACCCTCCGGTTTTT+AGG - chr1_4:13977251-13977270 None:intergenic 40.0%
GTGATTGATAAGGAACATGG+TGG + chr1_4:13977676-13977695 Msa0151690:CDS 40.0%
ATTGATAAGGAACATGGTGG+TGG + chr1_4:13977679-13977698 Msa0151690:CDS 40.0%
TTGATAAGGAACATGGTGGT+GGG + chr1_4:13977680-13977699 Msa0151690:CDS 40.0%
!! ACGGCATACCTAGTTTTTGA+AGG - chr1_4:13977982-13978001 None:intergenic 40.0%
CAACATTGTATCGAGAGAGT+TGG + chr1_4:13978028-13978047 Msa0151690:three_prime_UTR 40.0%
!! AGCAGAGAAATGGCTTTAAG+TGG + chr1_4:13976586-13976605 Msa0151690:exon 40.0%
!! GCAGAGAAATGGCTTTAAGT+GGG + chr1_4:13976587-13976606 Msa0151690:exon 40.0%
CATGTAGCTAGATTGCATCA+AGG + chr1_4:13976709-13976728 Msa0151690:CDS 40.0%
TAGATTGCATCAAGGTGACT+GGG + chr1_4:13976717-13976736 Msa0151690:CDS 40.0%
!! ATGTTGGTTCTGTCAAACAC+TGG + chr1_4:13976743-13976762 Msa0151690:CDS 40.0%
!! TGTTGGTTCTGTCAAACACT+GGG + chr1_4:13976744-13976763 Msa0151690:CDS 40.0%
GTGATTATTGAGCTTTCCCT+AGG + chr1_4:13976889-13976908 Msa0151690:intron 40.0%
TGCACCTCCCATTCATAAAA+AGG + chr1_4:13977145-13977164 Msa0151690:intron 40.0%
! CTGTCCTTTTTATGAATGGG+AGG - chr1_4:13977152-13977171 None:intergenic 40.0%
CTCCCATTCATAAAAAGGAC+AGG + chr1_4:13977150-13977169 Msa0151690:intron 40.0%
! GCCCTGTCCTTTTTATGAAT+GGG - chr1_4:13977155-13977174 None:intergenic 40.0%
! AGCCCTGTCCTTTTTATGAA+TGG - chr1_4:13977156-13977175 None:intergenic 40.0%
! TGGTCTTGGAAATGGTTTCT+TGG - chr1_4:13977193-13977212 None:intergenic 40.0%
! TGTTAACCCTCCGGTTTTTA+GGG - chr1_4:13977250-13977269 None:intergenic 40.0%
! TTGTTAACCCTCCGGTTTTT+AGG - chr1_4:13977251-13977270 None:intergenic 40.0%
GTGATTGATAAGGAACATGG+TGG + chr1_4:13977676-13977695 Msa0151690:CDS 40.0%
ATTGATAAGGAACATGGTGG+TGG + chr1_4:13977679-13977698 Msa0151690:CDS 40.0%
TTGATAAGGAACATGGTGGT+GGG + chr1_4:13977680-13977699 Msa0151690:CDS 40.0%
!! ACGGCATACCTAGTTTTTGA+AGG - chr1_4:13977982-13978001 None:intergenic 40.0%
CAACATTGTATCGAGAGAGT+TGG + chr1_4:13978028-13978047 Msa0151690:three_prime_UTR 40.0%
CTAGATTGCATCAAGGTGAC+TGG + chr1_4:13976716-13976735 Msa0151690:CDS 45.0%
CAAGGTGACTGGGAAAATGT+TGG + chr1_4:13976727-13976746 Msa0151690:CDS 45.0%
CTTTCGAACGATTCGTCCTA+GGG - chr1_4:13976908-13976927 None:intergenic 45.0%
TCTTTCGAACGATTCGTCCT+AGG - chr1_4:13976909-13976928 None:intergenic 45.0%
AAGACACCACATAGACTCGA+TGG + chr1_4:13977067-13977086 Msa0151690:intron 45.0%
AGACACCACATAGACTCGAT+GGG + chr1_4:13977068-13977087 Msa0151690:intron 45.0%
!!! GTATTTTGGCTTCGTGGTCT+AGG - chr1_4:13977095-13977114 None:intergenic 45.0%
AGCCAAAATACCCCATCGAT+CGG + chr1_4:13977104-13977123 Msa0151690:intron 45.0%
ATGTGTTGAACCCGATCGAT+GGG - chr1_4:13977118-13977137 None:intergenic 45.0%
TAAAAAGGACAGGGCTACCA+AGG + chr1_4:13977160-13977179 Msa0151690:intron 45.0%
GGTTTCTTGGTAAAGGACCT+TGG - chr1_4:13977180-13977199 None:intergenic 45.0%
! TGATGTGGTGGTCTTGGAAA+TGG - chr1_4:13977201-13977220 None:intergenic 45.0%
AGAGTTTGATGTGGTGGTCT+TGG - chr1_4:13977207-13977226 None:intergenic 45.0%
GGTCTCCTTTCCCTAAAAAC+CGG + chr1_4:13977237-13977256 Msa0151690:intron 45.0%
TCCTTTCCCTAAAAACCGGA+GGG + chr1_4:13977241-13977260 Msa0151690:intron 45.0%
TACGTGTGAATCCTTGCAGA+AGG + chr1_4:13977532-13977551 Msa0151690:intron 45.0%
!! ATGGTGGTGGGATTGTGAAA+TGG + chr1_4:13977692-13977711 Msa0151690:CDS 45.0%
CTAGATTGCATCAAGGTGAC+TGG + chr1_4:13976716-13976735 Msa0151690:CDS 45.0%
CAAGGTGACTGGGAAAATGT+TGG + chr1_4:13976727-13976746 Msa0151690:CDS 45.0%
CTTTCGAACGATTCGTCCTA+GGG - chr1_4:13976908-13976927 None:intergenic 45.0%
TCTTTCGAACGATTCGTCCT+AGG - chr1_4:13976909-13976928 None:intergenic 45.0%
AAGACACCACATAGACTCGA+TGG + chr1_4:13977067-13977086 Msa0151690:intron 45.0%
AGACACCACATAGACTCGAT+GGG + chr1_4:13977068-13977087 Msa0151690:intron 45.0%
!!! GTATTTTGGCTTCGTGGTCT+AGG - chr1_4:13977095-13977114 None:intergenic 45.0%
AGCCAAAATACCCCATCGAT+CGG + chr1_4:13977104-13977123 Msa0151690:intron 45.0%
ATGTGTTGAACCCGATCGAT+GGG - chr1_4:13977118-13977137 None:intergenic 45.0%
TAAAAAGGACAGGGCTACCA+AGG + chr1_4:13977160-13977179 Msa0151690:intron 45.0%
GGTTTCTTGGTAAAGGACCT+TGG - chr1_4:13977180-13977199 None:intergenic 45.0%
! TGATGTGGTGGTCTTGGAAA+TGG - chr1_4:13977201-13977220 None:intergenic 45.0%
AGAGTTTGATGTGGTGGTCT+TGG - chr1_4:13977207-13977226 None:intergenic 45.0%
GGTCTCCTTTCCCTAAAAAC+CGG + chr1_4:13977237-13977256 Msa0151690:intron 45.0%
TCCTTTCCCTAAAAACCGGA+GGG + chr1_4:13977241-13977260 Msa0151690:intron 45.0%
TACGTGTGAATCCTTGCAGA+AGG + chr1_4:13977532-13977551 Msa0151690:intron 45.0%
!! ATGGTGGTGGGATTGTGAAA+TGG + chr1_4:13977692-13977711 Msa0151690:CDS 45.0%
TAGGTCCCATCGAGTCTATG+TGG - chr1_4:13977076-13977095 None:intergenic 50.0%
!!! GATGGGGTATTTTGGCTTCG+TGG - chr1_4:13977101-13977120 None:intergenic 50.0%
GCCAAAATACCCCATCGATC+GGG + chr1_4:13977105-13977124 Msa0151690:intron 50.0%
!! ACCCGATCGATGGGGTATTT+TGG - chr1_4:13977109-13977128 None:intergenic 50.0%
TGTGTTGAACCCGATCGATG+GGG - chr1_4:13977117-13977136 None:intergenic 50.0%
CATGTGTTGAACCCGATCGA+TGG - chr1_4:13977119-13977138 None:intergenic 50.0%
GATCGGGTTCAACACATGAC+TGG + chr1_4:13977121-13977140 Msa0151690:intron 50.0%
CTCCTTTCCCTAAAAACCGG+AGG + chr1_4:13977240-13977259 Msa0151690:intron 50.0%
!! ACCCTCCGGTTTTTAGGGAA+AGG - chr1_4:13977245-13977264 None:intergenic 50.0%
TAGCCTCTTTGATGGGAACG+TGG + chr1_4:13977618-13977637 Msa0151690:CDS 50.0%
AGCCTCTTTGATGGGAACGT+GGG + chr1_4:13977619-13977638 Msa0151690:CDS 50.0%
TAGGTCCCATCGAGTCTATG+TGG - chr1_4:13977076-13977095 None:intergenic 50.0%
!!! GATGGGGTATTTTGGCTTCG+TGG - chr1_4:13977101-13977120 None:intergenic 50.0%
GCCAAAATACCCCATCGATC+GGG + chr1_4:13977105-13977124 Msa0151690:intron 50.0%
!! ACCCGATCGATGGGGTATTT+TGG - chr1_4:13977109-13977128 None:intergenic 50.0%
TGTGTTGAACCCGATCGATG+GGG - chr1_4:13977117-13977136 None:intergenic 50.0%
CATGTGTTGAACCCGATCGA+TGG - chr1_4:13977119-13977138 None:intergenic 50.0%
GATCGGGTTCAACACATGAC+TGG + chr1_4:13977121-13977140 Msa0151690:intron 50.0%
CTCCTTTCCCTAAAAACCGG+AGG + chr1_4:13977240-13977259 Msa0151690:intron 50.0%
!! ACCCTCCGGTTTTTAGGGAA+AGG - chr1_4:13977245-13977264 None:intergenic 50.0%
TAGCCTCTTTGATGGGAACG+TGG + chr1_4:13977618-13977637 Msa0151690:CDS 50.0%
AGCCTCTTTGATGGGAACGT+GGG + chr1_4:13977619-13977638 Msa0151690:CDS 50.0%
CACCCACGTTCCCATCAAAG+AGG - chr1_4:13977624-13977643 None:intergenic 55.0%
CACCCACGTTCCCATCAAAG+AGG - chr1_4:13977624-13977643 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 13976564 13978128 13976564 ID=Msa0151690;Name=Msa0151690
chr1_4 mRNA 13976564 13978128 13976564 ID=Msa0151690-mRNA-1;Parent=Msa0151690;Name=Msa0151690-mRNA-1;_AED=0.02;_eAED=0.02;_QI=31|1|1|1|1|1|2|300|153
chr1_4 exon 13976564 13976778 13976564 ID=Msa0151690-mRNA-1:exon:5527;Parent=Msa0151690-mRNA-1
chr1_4 exon 13977551 13978128 13977551 ID=Msa0151690-mRNA-1:exon:5528;Parent=Msa0151690-mRNA-1
chr1_4 five_prime_UTR 13976564 13976594 13976564 ID=Msa0151690-mRNA-1:five_prime_utr;Parent=Msa0151690-mRNA-1
chr1_4 CDS 13976595 13976778 13976595 ID=Msa0151690-mRNA-1:cds;Parent=Msa0151690-mRNA-1
chr1_4 CDS 13977551 13977828 13977551 ID=Msa0151690-mRNA-1:cds;Parent=Msa0151690-mRNA-1
chr1_4 three_prime_UTR 13977829 13978128 13977829 ID=Msa0151690-mRNA-1:three_prime_utr;Parent=Msa0151690-mRNA-1
Gene Sequence

>Msa0151690

ATGGCTTTAAGTGGGAAAGTGTTCACTGAAATAGAGATTCAAGCACCAGCTGCTAAGTTTTATAATGTTTGCAAGAAGCAACTTCAACAACTTCCTAATATCTCTAATGACATACATGTAGCTAGATTGCATCAAGGTGACTGGGAAAATGTTGGTTCTGTCAAACACTGGGAATATACAATAGAAGGAAAAAAAATAATTGCAAAAGAAAAAATTGAGACTATAGATGATGACAATAAGATAATCAAATATAGCCTCTTTGATGGGAACGTGGGTGAGAATTACAAGAGTTTAAAGGCAATATTACAAGTGATTGATAAGGAACATGGTGGTGGGATTGTGAAATGGACTTTTGAATATGAAAAGTTAAAACAAGATATTACAATTGCATCTCCTAATTCATACTTAGACTTTTCTGCAAAGGTCACAAAAGAAATTGATGCTCATATTGTCATGGAATAG

Protein sequence

>Msa0151690

MALSGKVFTEIEIQAPAAKFYNVCKKQLQQLPNISNDIHVARLHQGDWENVGSVKHWEYTIEGKKIIAKEKIETIDDDNKIIKYSLFDGNVGENYKSLKAILQVIDKEHGGGIVKWTFEYEKLKQDITIASPNSYLDFSAKVTKEIDAHIVME*