Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519640 | KEH35840.1 | 82.283 | 254 | 6 | 2 | 1 | 217 | 1 | 252 | 3.63e-141 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519640 | A0A072VCG9 | 82.283 | 254 | 6 | 2 | 1 | 217 | 1 | 252 | 1.74e-141 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031520 | Msa0519640 | 0.807277 | 5.466672e-50 | -8.615850e-47 |
| Msa0198910 | Msa0519640 | 0.804577 | 2.020455e-49 | -8.615850e-47 |
| Msa0388960 | Msa0519640 | 0.804491 | 2.105732e-49 | -8.615850e-47 |
| Msa0251640 | Msa0519640 | 0.807960 | 3.915903e-50 | -8.615850e-47 |
| Msa0490140 | Msa0519640 | 0.815598 | 8.515300e-52 | -8.615850e-47 |
| Msa0519440 | Msa0519640 | 0.824888 | 6.324222e-54 | -8.615850e-47 |
| Msa0519450 | Msa0519640 | 0.824393 | 8.272162e-54 | -8.615850e-47 |
| Msa0519520 | Msa0519640 | 0.857562 | 1.499698e-62 | -8.615850e-47 |
| Msa0519640 | Msa0585230 | 0.822896 | 1.853341e-53 | -8.615850e-47 |
| Msa0519640 | Msa0602980 | 0.816507 | 5.335377e-52 | -8.615850e-47 |
| Msa0519640 | Msa0661320 | 0.806547 | 7.803014e-50 | -8.615850e-47 |
| Msa0519640 | Msa0672690 | 0.820936 | 5.271266e-53 | -8.615850e-47 |
| Msa0519640 | Msa0768290 | 0.824141 | 9.476770e-54 | -8.615850e-47 |
| Msa0519640 | Msa0768370 | 0.802416 | 5.667910e-49 | -8.615850e-47 |
| Msa0519640 | Msa0844490 | 0.808687 | 2.740233e-50 | -8.615850e-47 |
| Msa0519640 | Msa0868160 | 0.804868 | 1.756830e-49 | -8.615850e-47 |
| Msa0519640 | Msa0931520 | 0.813858 | 2.068353e-51 | -8.615850e-47 |
| Msa0519640 | Msa0948320 | 0.812212 | 4.749656e-51 | -8.615850e-47 |
| Msa0519640 | Msa1121490 | 0.815691 | 8.118957e-52 | -8.615850e-47 |
| Msa0519640 | Msa1137570 | 0.817552 | 3.108538e-52 | -8.615850e-47 |
| Msa0519640 | Msa1455710 | 0.906454 | 1.458243e-80 | -8.615850e-47 |
| Msa0519640 | Msa1455720 | 0.823561 | 1.296016e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519640 | MtrunA17_Chr3g0135051 | 82.283 | 254 | 6 | 2 | 1 | 217 | 1 | 252 | 2.66e-144 | 407 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519640 | AT1G59520.2 | 55.118 | 254 | 69 | 3 | 1 | 217 | 1 | 246 | 3.39e-89 | 265 |
| Msa0519640 | AT1G59520.6 | 55.118 | 254 | 69 | 3 | 1 | 217 | 1 | 246 | 3.39e-89 | 265 |
| Msa0519640 | AT1G59520.5 | 55.118 | 254 | 69 | 3 | 1 | 217 | 1 | 246 | 1.92e-88 | 265 |
| Msa0519640 | AT1G59520.4 | 55.118 | 254 | 69 | 3 | 1 | 217 | 1 | 246 | 3.85e-88 | 265 |
| Msa0519640 | AT1G59520.1 | 55.118 | 254 | 69 | 3 | 1 | 217 | 1 | 246 | 3.85e-88 | 265 |
| Msa0519640 | AT1G59520.3 | 54.724 | 254 | 70 | 3 | 1 | 217 | 1 | 246 | 1.09e-87 | 264 |
Find 52 sgRNAs with CRISPR-Local
Find 366 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTGAATTGTGTCTTTA+TGG | 0.149394 | 3_4:-71937545 | Msa0519640:three_prime_UTR |
| GCTACTAAAATTAGACATTA+TGG | 0.166827 | 3_4:-71938738 | Msa0519640:three_prime_UTR |
| AAGAAGCATTCAAACTTAAT+TGG | 0.201119 | 3_4:-71942845 | Msa0519640:CDS |
| TCTGAACTAACATTGGTTTC+AGG | 0.227271 | 3_4:+71937640 | None:intergenic |
| CTACTAAAATTAGACATTAT+GGG | 0.283815 | 3_4:-71938737 | Msa0519640:three_prime_UTR |
| GCCCACCTGCGTACAAAATA+AGG | 0.297730 | 3_4:+71942222 | None:intergenic |
| ATCTTTATCTCCTATATATA+AGG | 0.306922 | 3_4:-71940893 | Msa0519640:intron |
| GTGCAGGTTTCTCGAGGTTC+TGG | 0.319194 | 3_4:-71942273 | Msa0519640:intron |
| ACTACATTTACCTTATATAT+AGG | 0.322902 | 3_4:+71940883 | None:intergenic |
| TAGATATGAATTGTTGAGTA+TGG | 0.351632 | 3_4:-71942870 | Msa0519640:CDS |
| GTGTAACTGTTGCAATTTGC+AGG | 0.351957 | 3_4:-71941478 | Msa0519640:intron |
| ATGTATCCCTCCCAGCTTGA+TGG | 0.384464 | 3_4:+71940914 | None:intergenic |
| TATATCTTTCTCTAGTCAAC+AGG | 0.403251 | 3_4:-71940947 | Msa0519640:intron |
| GGAAACAACACCTGCTTATC+CGG | 0.439105 | 3_4:-71939633 | Msa0519640:CDS |
| AAATAAGGATCAACACTCTC+TGG | 0.443748 | 3_4:+71942237 | None:intergenic |
| AAGACGTTTAAAGTCGTGTA+AGG | 0.451391 | 3_4:-71943114 | Msa0519640:five_prime_UTR |
| TTACTTTCAAGATTTAATCA+TGG | 0.462402 | 3_4:-71937453 | Msa0519640:three_prime_UTR |
| TCAATTGCAAAACATATATC+CGG | 0.475756 | 3_4:+71939614 | None:intergenic |
| GTTGTTCTTAATGCACATGA+TGG | 0.482727 | 3_4:-71939102 | Msa0519640:CDS |
| CTTCGATAGACGTGGATTGG+AGG | 0.484544 | 3_4:-71941541 | Msa0519640:CDS |
| AAACTTCGATAGACGTGGAT+TGG | 0.487018 | 3_4:-71941544 | Msa0519640:CDS |
| AATTGAAAATTGACACGACT+TGG | 0.495981 | 3_4:+71939783 | None:intergenic |
| GAATAATGAATGTACCTTGA+TGG | 0.498369 | 3_4:+71942973 | None:intergenic |
| AATAATGAATGTACCTTGAT+GGG | 0.499604 | 3_4:+71942974 | None:intergenic |
| AATTCATTCTGAACTAACAT+TGG | 0.500216 | 3_4:+71937633 | None:intergenic |
| GTAGAACTAGTACAAACTTC+CGG | 0.503055 | 3_4:+71939021 | None:intergenic |
| TTGAAAAGATTATGTATCAT+CGG | 0.503518 | 3_4:+71937522 | None:intergenic |
| TTCTTCAGAACCATCAAGCT+GGG | 0.515455 | 3_4:-71940924 | Msa0519640:CDS |
| TTGTTCTTAATGCACATGAT+GGG | 0.519594 | 3_4:-71939101 | Msa0519640:CDS |
| TTTGAGAAAATTAAACTCAA+GGG | 0.519914 | 3_4:-71938681 | Msa0519640:three_prime_UTR |
| AAACATATATCCGGATAAGC+AGG | 0.524022 | 3_4:+71939623 | None:intergenic |
| GGCAGCATTTCCTAGTGATA+AGG | 0.526186 | 3_4:-71939079 | Msa0519640:CDS |
| GAGAAATGGAATTAACAGTT+CGG | 0.527781 | 3_4:+71943075 | None:intergenic |
| GTTCTTCAGAACCATCAAGC+TGG | 0.528980 | 3_4:-71940925 | Msa0519640:CDS |
| TAAAATTAGACATTATGGGT+TGG | 0.541342 | 3_4:-71938733 | Msa0519640:three_prime_UTR |
| AGTAGCTCTTCTGATAAGAA+AGG | 0.542230 | 3_4:+71938646 | None:intergenic |
| TATTACCACAGCATCAAAAG+TGG | 0.546528 | 3_4:+71939580 | None:intergenic |
| TCATTTGACACCTTATCACT+AGG | 0.568955 | 3_4:+71939069 | None:intergenic |
| TGTACGCAGGTGGGCACCTG+AGG | 0.571914 | 3_4:-71942214 | Msa0519640:intron |
| AAAATGTATCGAAAGTAGAG+TGG | 0.577765 | 3_4:+71943155 | None:intergenic |
| TCAGAACCATCAAGCTGGGA+GGG | 0.589611 | 3_4:-71940920 | Msa0519640:CDS |
| TACTAGTGATGACTCCTCGC+CGG | 0.591620 | 3_4:-71939040 | Msa0519640:CDS |
| AAATTAAACTCAAGGGCAAG+AGG | 0.604383 | 3_4:-71938674 | Msa0519640:three_prime_UTR |
| AATGGAATTAACAGTTCGGT+CGG | 0.618894 | 3_4:+71943079 | None:intergenic |
| AGCGATTTCACTTATGCACA+TGG | 0.620912 | 3_4:-71938786 | Msa0519640:three_prime_UTR |
| ATGGTGGAGAAACCCCATCA+AGG | 0.637719 | 3_4:-71942987 | Msa0519640:intron |
| TTCAGAACCATCAAGCTGGG+AGG | 0.645173 | 3_4:-71940921 | Msa0519640:CDS |
| GGATGAAACTTCGATAGACG+TGG | 0.662637 | 3_4:-71941549 | Msa0519640:CDS |
| TGTTCTTAATGCACATGATG+GGG | 0.675929 | 3_4:-71939100 | Msa0519640:CDS |
| ATAATGAATGTACCTTGATG+GGG | 0.703469 | 3_4:+71942975 | None:intergenic |
| ATATAGTTAAACAAGATATG+CGG | 0.721323 | 3_4:+71938869 | None:intergenic |
| ACTAGTACAAACTTCCGGCG+AGG | 0.726490 | 3_4:+71939026 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATTAAAAAAGTTATT+CGG | + | chr3_4:71939022-71939041 | None:intergenic | 10.0% |
| !!! | TTTTCAATTATGAGATTTTA+CGG | + | chr3_4:71937594-71937613 | None:intergenic | 15.0% |
| !!! | TTTTCTTCAAATTATATAAC+CGG | + | chr3_4:71937988-71938007 | None:intergenic | 15.0% |
| !! | ATAATTTGAAGAAAAAACAA+TGG | - | chr3_4:71937993-71938012 | Msa0519640:intron | 15.0% |
| !! | CTAAAATCATTTAAGTATAT+TGG | - | chr3_4:71938951-71938970 | Msa0519640:three_prime_UTR | 15.0% |
| !!! | ATACAAGACTTTTAAATTTT+TGG | - | chr3_4:71939608-71939627 | Msa0519640:CDS | 15.0% |
| !!! | TACAAGACTTTTAAATTTTT+GGG | - | chr3_4:71939609-71939628 | Msa0519640:CDS | 15.0% |
| !!! | TATTTTTAGTGTTATCATTA+GGG | + | chr3_4:71940361-71940380 | None:intergenic | 15.0% |
| !!! | ATATTTTTAGTGTTATCATT+AGG | + | chr3_4:71940362-71940381 | None:intergenic | 15.0% |
| !!! | TTCATTTTCTTTTAAGTTTA+TGG | - | chr3_4:71941664-71941683 | Msa0519640:intron | 15.0% |
| !!! | TTTGCTTTTTAAAAACAATT+TGG | - | chr3_4:71942911-71942930 | Msa0519640:intron | 15.0% |
| !!! | TTGAAATGGATATGAAATTT+TGG | - | chr3_4:71937826-71937845 | Msa0519640:intron | 20.0% |
| !!! | TTTGATTTATATTTTGTTCG+CGG | - | chr3_4:71937858-71937877 | Msa0519640:intron | 20.0% |
| !! | AAAATAGTGGTAAAATAACT+CGG | + | chr3_4:71938217-71938236 | None:intergenic | 20.0% |
| !!! | AGTTATTTTACCACTATTTT+TGG | - | chr3_4:71938217-71938236 | Msa0519640:intron | 20.0% |
| !! | GACAATAATTCATACAAAAA+GGG | + | chr3_4:71938296-71938315 | None:intergenic | 20.0% |
| !!! | TACGTAGACATTTTTTTTTA+AGG | + | chr3_4:71939318-71939337 | None:intergenic | 20.0% |
| !! | GTTAAAAAGTTACTCTAATT+AGG | + | chr3_4:71939536-71939555 | None:intergenic | 20.0% |
| !!! | TAAATTTTTGGGTTATTATC+TGG | - | chr3_4:71939620-71939639 | Msa0519640:CDS | 20.0% |
| !!! | AAATTTTTGGGTTATTATCT+GGG | - | chr3_4:71939621-71939640 | Msa0519640:CDS | 20.0% |
| !! | ATCTTTATCTCCTATATATA+AGG | - | chr3_4:71939720-71939739 | Msa0519640:intron | 20.0% |
| !! | ACTACATTTACCTTATATAT+AGG | + | chr3_4:71939733-71939752 | None:intergenic | 20.0% |
| !! | TTTAATGAATACTTGTTTAC+CGG | - | chr3_4:71939752-71939771 | Msa0519640:intron | 20.0% |
| !! | TTACAAACAATTACAAGTAA+AGG | + | chr3_4:71939795-71939814 | None:intergenic | 20.0% |
| !!! | TCAAAAATCTATTTTTCTTC+AGG | + | chr3_4:71939872-71939891 | None:intergenic | 20.0% |
| !!! | TTTTGGTGAATTTGAAAATA+AGG | - | chr3_4:71940189-71940208 | Msa0519640:intron | 20.0% |
| !! | AAAATAAAATAATGCTGAGT+TGG | - | chr3_4:71940420-71940439 | Msa0519640:intron | 20.0% |
| !!! | TTTGAATCTCATTTTATGTT+TGG | - | chr3_4:71941069-71941088 | Msa0519640:intron | 20.0% |
| !!! | ATTTTTGAATTAACTAAGAC+AGG | - | chr3_4:71941126-71941145 | Msa0519640:intron | 20.0% |
| !!! | AGAATGCAAAAAGTATTTAA+GGG | + | chr3_4:71941411-71941430 | None:intergenic | 20.0% |
| !! | ATATAGTTAAACAAGATATG+CGG | + | chr3_4:71941747-71941766 | None:intergenic | 20.0% |
| !! | CTACTAAAATTAGACATTAT+GGG | - | chr3_4:71941876-71941895 | Msa0519640:intron | 20.0% |
| !!! | TTTTGAGAAAATTAAACTCA+AGG | - | chr3_4:71941931-71941950 | Msa0519640:intron | 20.0% |
| !! | TTTGAGAAAATTAAACTCAA+GGG | - | chr3_4:71941932-71941951 | Msa0519640:intron | 20.0% |
| !! | GAAATGATGAAATAAAGTAA+AGG | + | chr3_4:71942273-71942292 | None:intergenic | 20.0% |
| !! | GGGAATAATATATAACAAAT+GGG | + | chr3_4:71942494-71942513 | None:intergenic | 20.0% |
| !! | TGGGAATAATATATAACAAA+TGG | + | chr3_4:71942495-71942514 | None:intergenic | 20.0% |
| !! | TTTCGGAAATATATAGAAAA+AGG | + | chr3_4:71942518-71942537 | None:intergenic | 20.0% |
| !! | TTTCTATATATTTCCGAAAT+AGG | - | chr3_4:71942519-71942538 | Msa0519640:intron | 20.0% |
| !!! | TTTTATTATCTTTTAGGTAC+GGG | + | chr3_4:71942781-71942800 | None:intergenic | 20.0% |
| !!! | CTTTTATTATCTTTTAGGTA+CGG | + | chr3_4:71942782-71942801 | None:intergenic | 20.0% |
| !! | TACCTAAAAGATAATAAAAG+AGG | - | chr3_4:71942782-71942801 | Msa0519640:intron | 20.0% |
| !! | AAATTTGAATTGTGTCTTTA+TGG | - | chr3_4:71943068-71943087 | Msa0519640:five_prime_UTR | 20.0% |
| !! | TTGAAAAGATTATGTATCAT+CGG | + | chr3_4:71943094-71943113 | None:intergenic | 20.0% |
| !!! | CTATTTTCAATATTTTCTCA+TGG | - | chr3_4:71943125-71943144 | Msa0519640:five_prime_UTR | 20.0% |
| !! | TTACTTTCAAGATTTAATCA+TGG | - | chr3_4:71943160-71943179 | Msa0519640:five_prime_UTR | 20.0% |
| ! | TCATAATTGAAAAAGATGCT+TGG | - | chr3_4:71937601-71937620 | Msa0519640:three_prime_UTR | 25.0% |
| ! | AATAATGAATGTACCTTGAT+GGG | + | chr3_4:71937642-71937661 | None:intergenic | 25.0% |
| ! | TAGATATGAATTGTTGAGTA+TGG | - | chr3_4:71937743-71937762 | Msa0519640:intron | 25.0% |
| !!! | AAGAAGCATTCAAACTTAAT+TGG | - | chr3_4:71937768-71937787 | Msa0519640:intron | 25.0% |
| ! | TGTTTGATAGGAAATGAAAA+GGG | + | chr3_4:71937945-71937964 | None:intergenic | 25.0% |
| ! | ACATACAAATCCAAAAATAG+TGG | + | chr3_4:71938230-71938249 | None:intergenic | 25.0% |
| !! | TTGGATTTGTATGTTGTTTA+TGG | - | chr3_4:71938236-71938255 | Msa0519640:intron | 25.0% |
| ! | CGACAATAATTCATACAAAA+AGG | + | chr3_4:71938297-71938316 | None:intergenic | 25.0% |
| ! | TATCGAATTTAAATTACCTC+AGG | + | chr3_4:71938418-71938437 | None:intergenic | 25.0% |
| ! | ACTATTTGATTGTATGAACA+AGG | + | chr3_4:71938639-71938658 | None:intergenic | 25.0% |
| ! | TTCATACAATCAAATAGTGA+TGG | - | chr3_4:71938641-71938660 | Msa0519640:intron | 25.0% |
| !!! | TTTTTTAAAGTCAATCCTAG+AGG | + | chr3_4:71938749-71938768 | None:intergenic | 25.0% |
| !! | GGATTGACTTTAAAAAAAAC+CGG | - | chr3_4:71938752-71938771 | Msa0519640:three_prime_UTR | 25.0% |
| ! | AAATAAGTGCATCACTTAAT+TGG | - | chr3_4:71939270-71939289 | Msa0519640:intron | 25.0% |
| !! | TGTATGATTTTATCCGTATA+TGG | - | chr3_4:71939391-71939410 | Msa0519640:intron | 25.0% |
| !! | CTTTTCATGTTAATATTGGT+CGG | - | chr3_4:71939476-71939495 | Msa0519640:intron | 25.0% |
| ! | ATAATGACTTATAGCATACA+AGG | + | chr3_4:71940044-71940063 | None:intergenic | 25.0% |
| !!! | ATCGGTTTTTGCTTAAATAT+CGG | - | chr3_4:71940310-71940329 | Msa0519640:intron | 25.0% |
| !!! | TTAAGTCACTTTTATGTTTC+TGG | - | chr3_4:71940568-71940587 | Msa0519640:intron | 25.0% |
| !!! | TTTTCAATTGGACTCTAAAA+AGG | - | chr3_4:71940844-71940863 | Msa0519640:intron | 25.0% |
| ! | ACCTTTATTGATATGTCTAT+AGG | - | chr3_4:71940953-71940972 | Msa0519640:intron | 25.0% |
| ! | TCCTATAGACATATCAATAA+AGG | + | chr3_4:71940957-71940976 | None:intergenic | 25.0% |
| ! | TCAATTGCAAAACATATATC+CGG | + | chr3_4:71941002-71941021 | None:intergenic | 25.0% |
| ! | TTTAAGCATCTAATATCCAT+TGG | - | chr3_4:71941096-71941115 | Msa0519640:intron | 25.0% |
| ! | TTAAGCATCTAATATCCATT+GGG | - | chr3_4:71941097-71941116 | Msa0519640:intron | 25.0% |
| ! | TTCAAAAATATGATTCCCAA+TGG | + | chr3_4:71941115-71941134 | None:intergenic | 25.0% |
| ! | TTACACGTCAATAAAAATGT+GGG | + | chr3_4:71941221-71941240 | None:intergenic | 25.0% |
| ! | AACGAGTACATATTCTTTAA+TGG | + | chr3_4:71941252-71941271 | None:intergenic | 25.0% |
| ! | ACATGATTCACAAACAAAAA+AGG | + | chr3_4:71941388-71941407 | None:intergenic | 25.0% |
| !!! | CAGAATGCAAAAAGTATTTA+AGG | + | chr3_4:71941412-71941431 | None:intergenic | 25.0% |
| !!! | CTTAAATACTTTTTGCATTC+TGG | - | chr3_4:71941410-71941429 | Msa0519640:intron | 25.0% |
| ! | TACTACGAAAAAAGATATCA+AGG | - | chr3_4:71941612-71941631 | Msa0519640:intron | 25.0% |
| !!! | CTAATTTTAGTAGCAAGTAT+AGG | + | chr3_4:71941869-71941888 | None:intergenic | 25.0% |
| ! | GCTACTAAAATTAGACATTA+TGG | - | chr3_4:71941875-71941894 | Msa0519640:intron | 25.0% |
| ! | TAAAATTAGACATTATGGGT+TGG | - | chr3_4:71941880-71941899 | Msa0519640:intron | 25.0% |
| !! | AAAAAAGAGCGTAATATTGA+GGG | + | chr3_4:71942036-71942055 | None:intergenic | 25.0% |
| !! | AAAAAAAGAGCGTAATATTG+AGG | + | chr3_4:71942037-71942056 | None:intergenic | 25.0% |
| ! | GGAAATATATAGAAAAAGGT+GGG | + | chr3_4:71942514-71942533 | None:intergenic | 25.0% |
| ! | GGAATTCTCTATCATAAATT+GGG | + | chr3_4:71942760-71942779 | None:intergenic | 25.0% |
| !! | AGCCTCTTTTATTATCTTTT+AGG | + | chr3_4:71942787-71942806 | None:intergenic | 25.0% |
| ! | AATTCATTCTGAACTAACAT+TGG | + | chr3_4:71942983-71943002 | None:intergenic | 25.0% |
| !! | CAGAATGAATTTTCATACAT+TGG | - | chr3_4:71942992-71943011 | Msa0519640:CDS | 25.0% |
| !! | TGAATTTTCATACATTGGTA+TGG | - | chr3_4:71942997-71943016 | Msa0519640:CDS | 25.0% |
| AAAATGTATCGAAAGTAGAG+TGG | + | chr3_4:71937461-71937480 | None:intergenic | 30.0% | |
| GAGAAATGGAATTAACAGTT+CGG | + | chr3_4:71937541-71937560 | None:intergenic | 30.0% | |
| ATAATGAATGTACCTTGATG+GGG | + | chr3_4:71937641-71937660 | None:intergenic | 30.0% | |
| GAATAATGAATGTACCTTGA+TGG | + | chr3_4:71937643-71937662 | None:intergenic | 30.0% | |
| TTCATATCCATTTCAACATC+AGG | + | chr3_4:71937822-71937841 | None:intergenic | 30.0% | |
| ! | AAAAGGGAGATACCAATTTT+CGG | + | chr3_4:71937929-71937948 | None:intergenic | 30.0% |
| GTGTTTGATAGGAAATGAAA+AGG | + | chr3_4:71937946-71937965 | None:intergenic | 30.0% | |
| ! | AAATTATATAACCGGTGTCA+AGG | + | chr3_4:71937980-71937999 | None:intergenic | 30.0% |
| !! | TTTTAGAAGTTTTTGTGTGC+AGG | - | chr3_4:71938324-71938343 | Msa0519640:intron | 30.0% |
| ATTCGATACTGTTTAAACTC+CGG | + | chr3_4:71938453-71938472 | None:intergenic | 30.0% | |
| TCATCATGTCAAATGTATGA+AGG | + | chr3_4:71938536-71938555 | None:intergenic | 30.0% | |
| !!! | CAGAGAAGTGAAAGATTTTT+TGG | - | chr3_4:71938718-71938737 | Msa0519640:three_prime_UTR | 30.0% |
| ATAATAACACAAGGTCTAAC+CGG | + | chr3_4:71938774-71938793 | None:intergenic | 30.0% | |
| TTCTCAAGCATAATAACACA+AGG | + | chr3_4:71938783-71938802 | None:intergenic | 30.0% | |
| !! | TGGATTGTGATAAGTATTGA+TGG | - | chr3_4:71938857-71938876 | Msa0519640:three_prime_UTR | 30.0% |
| !! | GATAAGTATTGATGGCATTA+AGG | - | chr3_4:71938865-71938884 | Msa0519640:three_prime_UTR | 30.0% |
| AGGTGTTTACTTATTATGTG+TGG | - | chr3_4:71938885-71938904 | Msa0519640:three_prime_UTR | 30.0% | |
| ! | TGGATAGCTTTTATGATGTT+AGG | - | chr3_4:71938971-71938990 | Msa0519640:three_prime_UTR | 30.0% |
| !! | TCTATTTTCTCAAAGTGCTA+CGG | - | chr3_4:71939356-71939375 | Msa0519640:intron | 30.0% |
| CCAATATTAACATGAAAAGC+TGG | + | chr3_4:71939475-71939494 | None:intergenic | 30.0% | |
| ! | CCAGCTTTTCATGTTAATAT+TGG | - | chr3_4:71939472-71939491 | Msa0519640:intron | 30.0% |
| CTAATTAGGATCAACAGAAA+AGG | + | chr3_4:71939522-71939541 | None:intergenic | 30.0% | |
| TATATCTTTCTCTAGTCAAC+AGG | - | chr3_4:71939666-71939685 | Msa0519640:intron | 30.0% | |
| GGAAGTAAAGATAATTCAAC+CGG | + | chr3_4:71939774-71939793 | None:intergenic | 30.0% | |
| ! | TTTGTTAACCCAAAACCTTT+TGG | - | chr3_4:71939932-71939951 | Msa0519640:intron | 30.0% |
| TTCTGTAAAGATATCGTATG+AGG | + | chr3_4:71940075-71940094 | None:intergenic | 30.0% | |
| !!! | TCTCTTTTTTGTTATCCCTT+TGG | - | chr3_4:71940103-71940122 | Msa0519640:intron | 30.0% |
| ATATCCATATCTGTTCCAAA+GGG | + | chr3_4:71940121-71940140 | None:intergenic | 30.0% | |
| !! | ATGTTAATTTGCACATGACA+TGG | - | chr3_4:71940383-71940402 | Msa0519640:intron | 30.0% |
| TATTTATTTCATCCGATCTG+TGG | - | chr3_4:71940734-71940753 | Msa0519640:intron | 30.0% | |
| ATTAATAACACTGGCAAACA+TGG | - | chr3_4:71940765-71940784 | Msa0519640:intron | 30.0% | |
| AATTGAAAATTGACACGACT+TGG | + | chr3_4:71940833-71940852 | None:intergenic | 30.0% | |
| ! | AAGTCGTGTCAATTTTCAAT+TGG | - | chr3_4:71940832-71940851 | Msa0519640:intron | 30.0% |
| ATTGATATGTCTATAGGAAG+TGG | - | chr3_4:71940959-71940978 | Msa0519640:intron | 30.0% | |
| TAAAAATGTGGGGAATTTCA+AGG | + | chr3_4:71941210-71941229 | None:intergenic | 30.0% | |
| TACACGTCAATAAAAATGTG+GGG | + | chr3_4:71941220-71941239 | None:intergenic | 30.0% | |
| GTTACACGTCAATAAAAATG+TGG | + | chr3_4:71941222-71941241 | None:intergenic | 30.0% | |
| TTGTTCTTAATGCACATGAT+GGG | - | chr3_4:71941512-71941531 | Msa0519640:CDS | 30.0% | |
| !!! | GATTCTTTTTTCGTCTTTCA+CGG | + | chr3_4:71942380-71942399 | None:intergenic | 30.0% |
| AAGAATCCAACTACATTGAT+TGG | - | chr3_4:71942393-71942412 | Msa0519640:intron | 30.0% | |
| CGGAAATATATAGAAAAAGG+TGG | + | chr3_4:71942515-71942534 | None:intergenic | 30.0% | |
| ATATTTCCGAAATAGGAGTA+AGG | - | chr3_4:71942526-71942545 | Msa0519640:intron | 30.0% | |
| GTCTAATCAGGAAATGATAA+CGG | - | chr3_4:71942585-71942604 | Msa0519640:intron | 30.0% | |
| TCTAATCAGGAAATGATAAC+GGG | - | chr3_4:71942586-71942605 | Msa0519640:intron | 30.0% | |
| ! | GTAGAATTAGTTCTTTCACT+TGG | + | chr3_4:71942681-71942700 | None:intergenic | 30.0% |
| TGAAAGAACTAATTCTACAG+AGG | - | chr3_4:71942683-71942702 | Msa0519640:intron | 30.0% | |
| ATCATAAATTGGGAACGAAT+AGG | + | chr3_4:71942750-71942769 | None:intergenic | 30.0% | |
| GGGAATTCTCTATCATAAAT+TGG | + | chr3_4:71942761-71942780 | None:intergenic | 30.0% | |
| ! | AAGACGTTTAAAGTCGTGTA+AGG | - | chr3_4:71937499-71937518 | Msa0519640:three_prime_UTR | 35.0% |
| AATGGAATTAACAGTTCGGT+CGG | + | chr3_4:71937537-71937556 | None:intergenic | 35.0% | |
| ! | CAGTTTTCAGAGAAGAGAAA+TGG | + | chr3_4:71937555-71937574 | None:intergenic | 35.0% |
| AATTCGATTCATGCAACATG+CGG | - | chr3_4:71937701-71937720 | Msa0519640:three_prime_UTR | 35.0% | |
| ! | CGTTTTCTTTGTCCGAAAAT+TGG | - | chr3_4:71937914-71937933 | Msa0519640:intron | 35.0% |
| ACACCTTCTATCATAAGTGT+TGG | - | chr3_4:71938186-71938205 | Msa0519640:intron | 35.0% | |
| AAATAAGGATCAACACTCTC+TGG | + | chr3_4:71938379-71938398 | None:intergenic | 35.0% | |
| !!! | TTGATCCTTATTTTGTACGC+AGG | - | chr3_4:71938386-71938405 | Msa0519640:intron | 35.0% |
| ! | ATTTTACCCAATGTTTCCGT+CGG | - | chr3_4:71938570-71938589 | Msa0519640:intron | 35.0% |
| CGATGAAACTTTCACTTCTT+TGG | + | chr3_4:71938610-71938629 | None:intergenic | 35.0% | |
| AATGTACTTAGCATACCTCA+TGG | - | chr3_4:71938801-71938820 | Msa0519640:three_prime_UTR | 35.0% | |
| ! | GCTTTTATGATGTTAGGCTT+TGG | - | chr3_4:71938977-71938996 | Msa0519640:exon | 35.0% |
| ! | CAATGGTGGAAACGAAATTA+AGG | + | chr3_4:71939171-71939190 | None:intergenic | 35.0% |
| TGAATAGAAGCGACCATATA+CGG | + | chr3_4:71939407-71939426 | None:intergenic | 35.0% | |
| AGAACTAGCAGTCATTGTAT+AGG | + | chr3_4:71939439-71939458 | None:intergenic | 35.0% | |
| GATTGAAACATTCTGCAACT+AGG | - | chr3_4:71939566-71939585 | Msa0519640:intron | 35.0% | |
| GGATATTCTCAAACACGAAA+TGG | + | chr3_4:71939851-71939870 | None:intergenic | 35.0% | |
| ! | TCCTTCTTTGGGAGTTAAAT+TGG | - | chr3_4:71939968-71939987 | Msa0519640:intron | 35.0% |
| ACCAATTTAACTCCCAAAGA+AGG | + | chr3_4:71939972-71939991 | None:intergenic | 35.0% | |
| ACCACGAAGAAGCTAAATTT+GGG | + | chr3_4:71940010-71940029 | None:intergenic | 35.0% | |
| AACCACGAAGAAGCTAAATT+TGG | + | chr3_4:71940011-71940030 | None:intergenic | 35.0% | |
| !! | TTATCCCTTTGGAACAGATA+TGG | - | chr3_4:71940114-71940133 | Msa0519640:intron | 35.0% |
| CATATCCATATCTGTTCCAA+AGG | + | chr3_4:71940122-71940141 | None:intergenic | 35.0% | |
| ! | TCCTGCAATCATCACAATTT+TGG | - | chr3_4:71940172-71940191 | Msa0519640:intron | 35.0% |
| ACCAAAATTGTGATGATTGC+AGG | + | chr3_4:71940176-71940195 | None:intergenic | 35.0% | |
| ! | TTTTTGCATATCGGCGATAT+CGG | - | chr3_4:71940292-71940311 | Msa0519640:intron | 35.0% |
| TATGAAGTGAAGAGAGAAGA+TGG | + | chr3_4:71940523-71940542 | None:intergenic | 35.0% | |
| GCTTCTGCTATTAATAACAC+TGG | - | chr3_4:71940756-71940775 | Msa0519640:intron | 35.0% | |
| AAACATATATCCGGATAAGC+AGG | + | chr3_4:71940993-71941012 | None:intergenic | 35.0% | |
| TATTACCACAGCATCAAAAG+TGG | + | chr3_4:71941036-71941055 | None:intergenic | 35.0% | |
| ATAGCTATGCTTTATCTTGC+TGG | - | chr3_4:71941163-71941182 | Msa0519640:intron | 35.0% | |
| TAGCTATGCTTTATCTTGCT+GGG | - | chr3_4:71941164-71941183 | Msa0519640:intron | 35.0% | |
| GTAGGGAAATGGAATTACAA+AGG | + | chr3_4:71941459-71941478 | None:intergenic | 35.0% | |
| TTGTAATTCCATTTCCCTAC+AGG | - | chr3_4:71941459-71941478 | Msa0519640:intron | 35.0% | |
| TCTTTCAGTCAAAACCTGTA+GGG | + | chr3_4:71941476-71941495 | None:intergenic | 35.0% | |
| GTTGTTCTTAATGCACATGA+TGG | - | chr3_4:71941511-71941530 | Msa0519640:CDS | 35.0% | |
| TGTTCTTAATGCACATGATG+GGG | - | chr3_4:71941513-71941532 | Msa0519640:CDS | 35.0% | |
| TCATTTGACACCTTATCACT+AGG | + | chr3_4:71941547-71941566 | None:intergenic | 35.0% | |
| GTAGAACTAGTACAAACTTC+CGG | + | chr3_4:71941595-71941614 | None:intergenic | 35.0% | |
| AAATTAAACTCAAGGGCAAG+AGG | - | chr3_4:71941939-71941958 | Msa0519640:intron | 35.0% | |
| AGTAGCTCTTCTGATAAGAA+AGG | + | chr3_4:71941970-71941989 | None:intergenic | 35.0% | |
| CTCAATCCCTATTAGTTAGT+CGG | - | chr3_4:71941998-71942017 | Msa0519640:intron | 35.0% | |
| TCAATCCCTATTAGTTAGTC+GGG | - | chr3_4:71941999-71942018 | Msa0519640:intron | 35.0% | |
| CAGTATCCAATCAATGTAGT+TGG | + | chr3_4:71942402-71942421 | None:intergenic | 35.0% | |
| ! | TACATTGATTGGATACTGCT+GGG | - | chr3_4:71942404-71942423 | Msa0519640:intron | 35.0% |
| AAAGATACTCACTCACATGT+TGG | - | chr3_4:71942651-71942670 | Msa0519640:intron | 35.0% | |
| ! | AACTAATTCTACAGAGGTAC+TGG | - | chr3_4:71942689-71942708 | Msa0519640:intron | 35.0% |
| TTAACCAGTTGAAAGAACAC+AGG | - | chr3_4:71942831-71942850 | Msa0519640:CDS | 35.0% | |
| TAACCAGTTGAAAGAACACA+GGG | - | chr3_4:71942832-71942851 | Msa0519640:CDS | 35.0% | |
| ! | CATTAGTTTAGAGCCTAAGA+AGG | + | chr3_4:71942880-71942899 | None:intergenic | 35.0% |
| !! | TCTGAACTAACATTGGTTTC+AGG | + | chr3_4:71942976-71942995 | None:intergenic | 35.0% |
| ! | AGTAGAGTGGTTTTTGATCC+TGG | + | chr3_4:71937448-71937467 | None:intergenic | 40.0% |
| TTGAAAAAGATGCTTGGCGA+TGG | - | chr3_4:71937607-71937626 | Msa0519640:three_prime_UTR | 40.0% | |
| AGATGCTCCTGATGTTGAAA+TGG | - | chr3_4:71937812-71937831 | Msa0519640:intron | 40.0% | |
| !! | CAGTATCGATGTGTAAGTGT+TGG | + | chr3_4:71938075-71938094 | None:intergenic | 40.0% |
| !! | CACTTATGATAGAAGGTGTC+TGG | + | chr3_4:71938185-71938204 | None:intergenic | 40.0% |
| GCACCAACACTTATGATAGA+AGG | + | chr3_4:71938192-71938211 | None:intergenic | 40.0% | |
| !!! | ATCCTTATTTTGTACGCAGG+TGG | - | chr3_4:71938389-71938408 | Msa0519640:intron | 40.0% |
| !!! | TCCTTATTTTGTACGCAGGT+GGG | - | chr3_4:71938390-71938409 | Msa0519640:intron | 40.0% |
| TTCGATATATACGATGCTGC+CGG | - | chr3_4:71938431-71938450 | Msa0519640:intron | 40.0% | |
| ATGTATGAAGGACGCATACA+AGG | + | chr3_4:71938524-71938543 | None:intergenic | 40.0% | |
| ATGATTCCGACGGAAACATT+GGG | + | chr3_4:71938579-71938598 | None:intergenic | 40.0% | |
| AATGATTCCGACGGAAACAT+TGG | + | chr3_4:71938580-71938599 | None:intergenic | 40.0% | |
| GGAGATGTAAATGATTCCGA+CGG | + | chr3_4:71938589-71938608 | None:intergenic | 40.0% | |
| !!! | GATTTTTTGGTCTGACCTCT+AGG | - | chr3_4:71938731-71938750 | Msa0519640:three_prime_UTR | 40.0% |
| ! | CCAACTAATTTGAAGCCATG+AGG | + | chr3_4:71938819-71938838 | None:intergenic | 40.0% |
| CCTCATGGCTTCAAATTAGT+TGG | - | chr3_4:71938816-71938835 | Msa0519640:three_prime_UTR | 40.0% | |
| ATCCAACTCATGCTATACCA+AGG | + | chr3_4:71938842-71938861 | None:intergenic | 40.0% | |
| ATCCACTAAGTTGCTCAACT+GGG | + | chr3_4:71939048-71939067 | None:intergenic | 40.0% | |
| AAACTTCGATAGACGTGGAT+TGG | - | chr3_4:71939069-71939088 | Msa0519640:CDS | 40.0% | |
| GTGTAACTGTTGCAATTTGC+AGG | - | chr3_4:71939135-71939154 | Msa0519640:CDS | 40.0% | |
| TTAGACAAGGTGAAGCACAA+TGG | + | chr3_4:71939188-71939207 | None:intergenic | 40.0% | |
| TTCACCTTGTCTAACCTGTT+AGG | - | chr3_4:71939194-71939213 | Msa0519640:intron | 40.0% | |
| CTTAATTGGTGCACAGTCTA+CGG | - | chr3_4:71939284-71939303 | Msa0519640:intron | 40.0% | |
| ! | TTCTCAAAGTGCTACGGAAA+TGG | - | chr3_4:71939362-71939381 | Msa0519640:intron | 40.0% |
| GAAACATTCTGCAACTAGGA+AGG | - | chr3_4:71939570-71939589 | Msa0519640:intron | 40.0% | |
| TTCTTCAGAACCATCAAGCT+GGG | - | chr3_4:71939689-71939708 | Msa0519640:intron | 40.0% | |
| TACCAACCTAGAGACAAAAG+AGG | - | chr3_4:71939904-71939923 | Msa0519640:intron | 40.0% | |
| ACCAACCTAGAGACAAAAGA+GGG | - | chr3_4:71939905-71939924 | Msa0519640:intron | 40.0% | |
| ! | ACCCAAATTTAGCTTCTTCG+TGG | - | chr3_4:71940006-71940025 | Msa0519640:intron | 40.0% |
| ! | AGCGGTGACTTTTTGCATAT+CGG | - | chr3_4:71940283-71940302 | Msa0519640:intron | 40.0% |
| TTAGTGATCAGAGATGACCT+AGG | + | chr3_4:71940485-71940504 | None:intergenic | 40.0% | |
| TAATAGCAGAAGCCACAGAT+CGG | + | chr3_4:71940749-71940768 | None:intergenic | 40.0% | |
| AGTCAAAACCTGTAGGGAAA+TGG | + | chr3_4:71941470-71941489 | None:intergenic | 40.0% | |
| CTCTTTCAGTCAAAACCTGT+AGG | + | chr3_4:71941477-71941496 | None:intergenic | 40.0% | |
| AGCGATTTCACTTATGCACA+TGG | - | chr3_4:71941827-71941846 | Msa0519640:intron | 40.0% | |
| ACTAATAGGGATTGAGGCAA+GGG | + | chr3_4:71941994-71942013 | None:intergenic | 40.0% | |
| AACTAATAGGGATTGAGGCA+AGG | + | chr3_4:71941995-71942014 | None:intergenic | 40.0% | |
| CGACTAACTAATAGGGATTG+AGG | + | chr3_4:71942000-71942019 | None:intergenic | 40.0% | |
| CAATCCCTATTAGTTAGTCG+GGG | - | chr3_4:71942000-71942019 | Msa0519640:intron | 40.0% | |
| ! | AAGAGCGTAATATTGAGGGA+AGG | + | chr3_4:71942032-71942051 | None:intergenic | 40.0% |
| !! | ATTGACTGACTTGCTTCCTT+CGG | - | chr3_4:71942115-71942134 | Msa0519640:intron | 40.0% |
| TTCCTTCGGTAGAGGATAAA+GGG | - | chr3_4:71942129-71942148 | Msa0519640:intron | 40.0% | |
| ! | TATGGATTGAACCTCTTCTC+CGG | + | chr3_4:71942192-71942211 | None:intergenic | 40.0% |
| GATCAATCTCCTCTCGTTAT+CGG | - | chr3_4:71942307-71942326 | Msa0519640:intron | 40.0% | |
| CTATCGTAAGCAAGTCTTGA+AGG | + | chr3_4:71942337-71942356 | None:intergenic | 40.0% | |
| ! | CTTCAAGACTTGCTTACGAT+AGG | - | chr3_4:71942335-71942354 | Msa0519640:intron | 40.0% |
| ! | AAGACTTGCTTACGATAGGA+GGG | - | chr3_4:71942339-71942358 | Msa0519640:intron | 40.0% |
| ! | CTACATTGATTGGATACTGC+TGG | - | chr3_4:71942403-71942422 | Msa0519640:intron | 40.0% |
| CAAATGGGTAAGACAACCAA+GGG | + | chr3_4:71942479-71942498 | None:intergenic | 40.0% | |
| ACAAATGGGTAAGACAACCA+AGG | + | chr3_4:71942480-71942499 | None:intergenic | 40.0% | |
| CTGCTTCCTTACTCCTATTT+CGG | + | chr3_4:71942535-71942554 | None:intergenic | 40.0% | |
| AGAAGAGAAGTCGTCTAATC+AGG | - | chr3_4:71942573-71942592 | Msa0519640:intron | 40.0% | |
| !!! | CCGCTACTTTTTCTGTTGAT+GGG | + | chr3_4:71943048-71943067 | None:intergenic | 40.0% |
| CCCATCAACAGAAAAAGTAG+CGG | - | chr3_4:71943045-71943064 | Msa0519640:five_prime_UTR | 40.0% | |
| !!! | TCCGCTACTTTTTCTGTTGA+TGG | + | chr3_4:71943049-71943068 | None:intergenic | 40.0% |
| AAAAAGATGCTTGGCGATGG+TGG | - | chr3_4:71937610-71937629 | Msa0519640:three_prime_UTR | 45.0% | |
| !! | TGTGAGTGTCGGTGTTTGAT+AGG | + | chr3_4:71937957-71937976 | None:intergenic | 45.0% |
| ! | TTGGTGTCCAACATGTGTCA+CGG | + | chr3_4:71938056-71938075 | None:intergenic | 45.0% |
| GCAATCACATGTGTTAGTGC+TGG | - | chr3_4:71938125-71938144 | Msa0519640:intron | 45.0% | |
| !! | CATGTGTTAGTGCTGGTGTT+TGG | - | chr3_4:71938132-71938151 | Msa0519640:intron | 45.0% |
| !! | TAGTGCTGGTGTTTGGACTT+TGG | - | chr3_4:71938139-71938158 | Msa0519640:intron | 45.0% |
| ! | TTTTGTGTGCAGGTTTCTCG+AGG | - | chr3_4:71938334-71938353 | Msa0519640:intron | 45.0% |
| ! | GGCTTCAAATTAGTTGGCCT+TGG | - | chr3_4:71938822-71938841 | Msa0519640:three_prime_UTR | 45.0% |
| TCCACTAAGTTGCTCAACTG+GGG | + | chr3_4:71939047-71939066 | None:intergenic | 45.0% | |
| CATCCACTAAGTTGCTCAAC+TGG | + | chr3_4:71939049-71939068 | None:intergenic | 45.0% | |
| GGATGAAACTTCGATAGACG+TGG | - | chr3_4:71939064-71939083 | Msa0519640:CDS | 45.0% | |
| ACCTTGTCTAACCTGTTAGG+TGG | - | chr3_4:71939197-71939216 | Msa0519640:intron | 45.0% | |
| ACCACCTAACAGGTTAGACA+AGG | + | chr3_4:71939201-71939220 | None:intergenic | 45.0% | |
| TTGCTGTGAAACCACCTAAC+AGG | + | chr3_4:71939211-71939230 | None:intergenic | 45.0% | |
| GTTCTTCAGAACCATCAAGC+TGG | - | chr3_4:71939688-71939707 | Msa0519640:intron | 45.0% | |
| ! | TCCCTCTTTTGTCTCTAGGT+TGG | + | chr3_4:71939909-71939928 | None:intergenic | 45.0% |
| ACCTAGAGACAAAAGAGGGA+AGG | - | chr3_4:71939909-71939928 | Msa0519640:intron | 45.0% | |
| ! | ACCTTCCCTCTTTTGTCTCT+AGG | + | chr3_4:71939913-71939932 | None:intergenic | 45.0% |
| ! | TAACCCAAAACCTTTTGGCG+AGG | - | chr3_4:71939937-71939956 | Msa0519640:intron | 45.0% |
| ! | TCACCTCGCCAAAAGGTTTT+GGG | + | chr3_4:71939943-71939962 | None:intergenic | 45.0% |
| ! | ATCACCTCGCCAAAAGGTTT+TGG | + | chr3_4:71939944-71939963 | None:intergenic | 45.0% |
| ! | AAAACCTTTTGGCGAGGTGA+TGG | - | chr3_4:71939943-71939962 | Msa0519640:intron | 45.0% |
| ! | AGGTGATGGTGTCCTTCTTT+GGG | - | chr3_4:71939957-71939976 | Msa0519640:intron | 45.0% |
| AAAAGTCACCGCTATTGCAG+TGG | + | chr3_4:71940276-71940295 | None:intergenic | 45.0% | |
| !! | TGCTGAGTTGGTGATGAGAT+AGG | - | chr3_4:71940432-71940451 | Msa0519640:intron | 45.0% |
| !! | GCTGAGTTGGTGATGAGATA+GGG | - | chr3_4:71940433-71940452 | Msa0519640:intron | 45.0% |
| AGTGAAGAGAGAAGATGGAG+AGG | + | chr3_4:71940518-71940537 | None:intergenic | 45.0% | |
| ACAACCTGATAAAGCGCAGT+GGG | + | chr3_4:71940791-71940810 | None:intergenic | 45.0% | |
| ! | GGACTCTAAAAAGGCAAGTG+TGG | - | chr3_4:71940853-71940872 | Msa0519640:intron | 45.0% |
| GGAAACAACACCTGCTTATC+CGG | - | chr3_4:71940980-71940999 | Msa0519640:intron | 45.0% | |
| !! | TGACTCCACTTTTGATGCTG+TGG | - | chr3_4:71941028-71941047 | Msa0519640:intron | 45.0% |
| GGCAGCATTTCCTAGTGATA+AGG | - | chr3_4:71941534-71941553 | Msa0519640:CDS | 45.0% | |
| CAGTCCCCGACTAACTAATA+GGG | + | chr3_4:71942007-71942026 | None:intergenic | 45.0% | |
| TTTCCTGTACAGCTAGTAGG+CGG | + | chr3_4:71942076-71942095 | None:intergenic | 45.0% | |
| ! | CCTTTTCCTGTACAGCTAGT+AGG | + | chr3_4:71942079-71942098 | None:intergenic | 45.0% |
| CCTACTAGCTGTACAGGAAA+AGG | - | chr3_4:71942076-71942095 | Msa0519640:intron | 45.0% | |
| CTTCCTTCGGTAGAGGATAA+AGG | - | chr3_4:71942128-71942147 | Msa0519640:intron | 45.0% | |
| ACCACTACACTCACTCATTC+CGG | - | chr3_4:71942170-71942189 | Msa0519640:intron | 45.0% | |
| GGAGAAGAGGTTCAATCCAT+AGG | - | chr3_4:71942191-71942210 | Msa0519640:intron | 45.0% | |
| ! | CAAGACTTGCTTACGATAGG+AGG | - | chr3_4:71942338-71942357 | Msa0519640:intron | 45.0% |
| TACGATAGGAGGGACTTGAA+AGG | - | chr3_4:71942349-71942368 | Msa0519640:intron | 45.0% | |
| TAAAGCCGTTGAATTGCCCT+TGG | - | chr3_4:71942460-71942479 | Msa0519640:intron | 45.0% | |
| GACAACCAAGGGCAATTCAA+CGG | + | chr3_4:71942468-71942487 | None:intergenic | 45.0% | |
| ! | GCTTCAGCTTCTGTTCTGAA+AGG | - | chr3_4:71942804-71942823 | Msa0519640:intron | 45.0% |
| ACTCCCTGTGTTCTTTCAAC+TGG | + | chr3_4:71942838-71942857 | None:intergenic | 45.0% | |
| AAAGAACACAGGGAGTAGAG+CGG | - | chr3_4:71942842-71942861 | Msa0519640:CDS | 45.0% | |
| !!! | ATTTTAATTACAAATATAAA+TGG | - | chr3_4:71937476-71937495 | Msa0519640:three_prime_UTR | 5.0% |
| ! | ATGGTGGAGAAACCCCATCA+AGG | - | chr3_4:71937626-71937645 | Msa0519640:three_prime_UTR | 50.0% |
| GTTCGCGGTAAAGAGTCTAG+AGG | - | chr3_4:71937873-71937892 | Msa0519640:intron | 50.0% | |
| TCTGACACCGTGACACATGT+TGG | - | chr3_4:71938046-71938065 | Msa0519640:intron | 50.0% | |
| GCCCACCTGCGTACAAAATA+AGG | + | chr3_4:71938394-71938413 | None:intergenic | 50.0% | |
| GGCCTTGGTATAGCATGAGT+TGG | - | chr3_4:71938837-71938856 | Msa0519640:three_prime_UTR | 50.0% | |
| CCACTAAGTTGCTCAACTGG+GGG | + | chr3_4:71939046-71939065 | None:intergenic | 50.0% | |
| !! | CTTCGATAGACGTGGATTGG+AGG | - | chr3_4:71939072-71939091 | Msa0519640:CDS | 50.0% |
| GACAAGGTGAAGCACAATGG+TGG | + | chr3_4:71939185-71939204 | None:intergenic | 50.0% | |
| TTCAGAACCATCAAGCTGGG+AGG | - | chr3_4:71939692-71939711 | Msa0519640:intron | 50.0% | |
| TCAGAACCATCAAGCTGGGA+GGG | - | chr3_4:71939693-71939712 | Msa0519640:intron | 50.0% | |
| ATGTATCCCTCCCAGCTTGA+TGG | + | chr3_4:71939702-71939721 | None:intergenic | 50.0% | |
| ! | GAGGTGATGGTGTCCTTCTT+TGG | - | chr3_4:71939956-71939975 | Msa0519640:intron | 50.0% |
| !!! | TAGCGTATCGGCTTTTGCTG+TGG | + | chr3_4:71940239-71940258 | None:intergenic | 50.0% |
| GCGGAATCGCAATAGCGTAT+CGG | + | chr3_4:71940251-71940270 | None:intergenic | 50.0% | |
| TTCCGCTACCACTGCAATAG+CGG | - | chr3_4:71940265-71940284 | Msa0519640:intron | 50.0% | |
| TCAGAGATGACCTAGGTCGT+GGG | + | chr3_4:71940478-71940497 | None:intergenic | 50.0% | |
| ATCAGAGATGACCTAGGTCG+TGG | + | chr3_4:71940479-71940498 | None:intergenic | 50.0% | |
| CACAACCTGATAAAGCGCAG+TGG | + | chr3_4:71940792-71940811 | None:intergenic | 50.0% | |
| TACTAGTGATGACTCCTCGC+CGG | - | chr3_4:71941573-71941592 | Msa0519640:intron | 50.0% | |
| ACTAGTACAAACTTCCGGCG+AGG | + | chr3_4:71941590-71941609 | None:intergenic | 50.0% | |
| CCAGTCCCCGACTAACTAAT+AGG | + | chr3_4:71942008-71942027 | None:intergenic | 50.0% | |
| CCTATTAGTTAGTCGGGGAC+TGG | - | chr3_4:71942005-71942024 | Msa0519640:intron | 50.0% | |
| TATCCGCCTACTAGCTGTAC+AGG | - | chr3_4:71942070-71942089 | Msa0519640:intron | 50.0% | |
| !! | TGACTTGCTTCCTTCGGTAG+AGG | - | chr3_4:71942121-71942140 | Msa0519640:intron | 50.0% |
| AGCCCTTTATCCTCTACCGA+AGG | + | chr3_4:71942134-71942153 | None:intergenic | 50.0% | |
| TCCGGAATGAGTGAGTGTAG+TGG | + | chr3_4:71942174-71942193 | None:intergenic | 50.0% | |
| ACTCACTCATTCCGGAGAAG+AGG | - | chr3_4:71942178-71942197 | Msa0519640:intron | 50.0% | |
| AGAGGTTCAATCCATAGGCG+AGG | - | chr3_4:71942196-71942215 | Msa0519640:intron | 50.0% | |
| GAGGTGGAGACTTCGGTATA+GGG | - | chr3_4:71942215-71942234 | Msa0519640:CDS | 50.0% | |
| TCGAATAGCGCTCCAATCGA+AGG | - | chr3_4:71942609-71942628 | Msa0519640:intron | 50.0% | |
| CGAATAGCGCTCCAATCGAA+GGG | - | chr3_4:71942610-71942629 | Msa0519640:intron | 50.0% | |
| !! | TCTACAGAGGTACTGGCTAG+AGG | - | chr3_4:71942696-71942715 | Msa0519640:intron | 50.0% |
| ! | CGGTGTCAAGGTGTGAGTGT+CGG | + | chr3_4:71937968-71937987 | None:intergenic | 55.0% |
| CGACACTCACACCTTGACAC+CGG | - | chr3_4:71937966-71937985 | Msa0519640:intron | 55.0% | |
| ! | CATGTGTCACGGTGTCAGAC+AGG | + | chr3_4:71938045-71938064 | None:intergenic | 55.0% |
| CTTTGGACACCGACACGTGT+CGG | - | chr3_4:71938156-71938175 | Msa0519640:intron | 55.0% | |
| TTTGGACACCGACACGTGTC+GGG | - | chr3_4:71938157-71938176 | Msa0519640:intron | 55.0% | |
| GTGCAGGTTTCTCGAGGTTC+TGG | - | chr3_4:71938340-71938359 | Msa0519640:intron | 55.0% | |
| CCCCCAGTTGAGCAACTTAG+TGG | - | chr3_4:71939043-71939062 | Msa0519640:CDS | 55.0% | |
| GACACCATCACCTCGCCAAA+AGG | + | chr3_4:71939950-71939969 | None:intergenic | 55.0% | |
| CACCGCTATTGCAGTGGTAG+CGG | + | chr3_4:71940270-71940289 | None:intergenic | 55.0% | |
| TGACCTAGGTCGTGGGGTTT+GGG | + | chr3_4:71940471-71940490 | None:intergenic | 55.0% | |
| ATGACCTAGGTCGTGGGGTT+TGG | + | chr3_4:71940472-71940491 | None:intergenic | 55.0% | |
| CAGAGATGACCTAGGTCGTG+GGG | + | chr3_4:71940477-71940496 | None:intergenic | 55.0% | |
| AGAAGATGGAGAGGCAGAGG+CGG | + | chr3_4:71940509-71940528 | None:intergenic | 55.0% | |
| GAGAGAAGATGGAGAGGCAG+AGG | + | chr3_4:71940512-71940531 | None:intergenic | 55.0% | |
| ATGGCCCACTGCGCTTTATC+AGG | - | chr3_4:71940784-71940803 | Msa0519640:intron | 55.0% | |
| GGTTCAATCCATAGGCGAGG+TGG | - | chr3_4:71942199-71942218 | Msa0519640:intron | 55.0% | |
| CATAGGCGAGGTGGAGACTT+CGG | - | chr3_4:71942208-71942227 | Msa0519640:intron | 55.0% | |
| CGAGGTGGAGACTTCGGTAT+AGG | - | chr3_4:71942214-71942233 | Msa0519640:intron | 55.0% | |
| TCGGTATAGGGTCGCCTGTT+CGG | - | chr3_4:71942227-71942246 | Msa0519640:CDS | 55.0% | |
| GAAGGTCGACCGATAACGAG+AGG | + | chr3_4:71942319-71942338 | None:intergenic | 55.0% | |
| ATAGCGCTCCAATCGAAGGG+CGG | - | chr3_4:71942613-71942632 | Msa0519640:intron | 55.0% | |
| CATTTCTCCCGCCCTTCGAT+TGG | + | chr3_4:71942624-71942643 | None:intergenic | 55.0% | |
| !! | CAGAGGTACTGGCTAGAGGA+CGG | - | chr3_4:71942700-71942719 | Msa0519640:intron | 55.0% |
| !! | AGAGGTACTGGCTAGAGGAC+GGG | - | chr3_4:71942701-71942720 | Msa0519640:intron | 55.0% |
| !! | GACGGGTTACTCTACGCCAA+GGG | - | chr3_4:71942718-71942737 | Msa0519640:intron | 55.0% |
| AACGAATAGGAACCCGCCCT+TGG | + | chr3_4:71942737-71942756 | None:intergenic | 55.0% | |
| GCCTAAGAAGGTCTCCCCTA+GGG | + | chr3_4:71942868-71942887 | None:intergenic | 55.0% | |
| AGCCTAAGAAGGTCTCCCCT+AGG | + | chr3_4:71942869-71942888 | None:intergenic | 55.0% | |
| ACCTAGGTCGTGGGGTTTGG+GGG | + | chr3_4:71940469-71940488 | None:intergenic | 60.0% | |
| GACCTAGGTCGTGGGGTTTG+GGG | + | chr3_4:71940470-71940489 | None:intergenic | 60.0% | |
| CGAAGTCTCCACCTCGCCTA+TGG | + | chr3_4:71942210-71942229 | None:intergenic | 60.0% | |
| TTCGGCGCGCTACTGCTCTT+TGG | - | chr3_4:71942245-71942264 | Msa0519640:CDS | 60.0% | |
| TAGCGCTCCAATCGAAGGGC+GGG | - | chr3_4:71942614-71942633 | Msa0519640:intron | 60.0% | |
| !! | GGACGGGTTACTCTACGCCA+AGG | - | chr3_4:71942717-71942736 | Msa0519640:intron | 60.0% |
| GGGTTACTCTACGCCAAGGG+CGG | - | chr3_4:71942721-71942740 | Msa0519640:intron | 60.0% | |
| GGTTACTCTACGCCAAGGGC+GGG | - | chr3_4:71942722-71942741 | Msa0519640:intron | 60.0% | |
| GCCCTAGGGGAGACCTTCTT+AGG | - | chr3_4:71942864-71942883 | Msa0519640:CDS | 60.0% | |
| GTCTGGTGCCCGACACGTGT+CGG | + | chr3_4:71938168-71938187 | None:intergenic | 65.0% | |
| TGTACGCAGGTGGGCACCTG+AGG | - | chr3_4:71938399-71938418 | Msa0519640:intron | 65.0% | |
| ACCCCCAAACCCCACGACCT+AGG | - | chr3_4:71940465-71940484 | Msa0519640:intron | 65.0% | |
| AGAGCAGTAGCGCGCCGAAC+AGG | + | chr3_4:71942244-71942263 | None:intergenic | 65.0% | |
| ACAGGGAGTAGAGCGGCCCT+AGG | - | chr3_4:71942849-71942868 | Msa0519640:CDS | 65.0% | |
| CAGGGAGTAGAGCGGCCCTA+GGG | - | chr3_4:71942850-71942869 | Msa0519640:CDS | 65.0% | |
| AGGGAGTAGAGCGGCCCTAG+GGG | - | chr3_4:71942851-71942870 | Msa0519640:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 71937444 | 71943191 | 71937444 | ID=Msa0519640;Name=Msa0519640 |
| chr3_4 | mRNA | 71937444 | 71943191 | 71937444 | ID=Msa0519640-mRNA-1;Parent=Msa0519640;Name=Msa0519640-mRNA-1;_AED=0.18;_eAED=0.18;_QI=172|0.75|0.77|1|0.62|0.55|9|628|217 |
| chr3_4 | exon | 71937444 | 71937731 | 71937444 | ID=Msa0519640-mRNA-1:exon:19782;Parent=Msa0519640-mRNA-1 |
| chr3_4 | exon | 71938656 | 71939154 | 71938656 | ID=Msa0519640-mRNA-1:exon:19781;Parent=Msa0519640-mRNA-1 |
| chr3_4 | exon | 71939586 | 71939660 | 71939586 | ID=Msa0519640-mRNA-1:exon:19780;Parent=Msa0519640-mRNA-1 |
| chr3_4 | exon | 71939764 | 71939829 | 71939764 | ID=Msa0519640-mRNA-1:exon:19779;Parent=Msa0519640-mRNA-1 |
| chr3_4 | exon | 71940894 | 71940954 | 71940894 | ID=Msa0519640-mRNA-1:exon:19778;Parent=Msa0519640-mRNA-1 |
| chr3_4 | exon | 71941479 | 71941585 | 71941479 | ID=Msa0519640-mRNA-1:exon:19777;Parent=Msa0519640-mRNA-1 |
| chr3_4 | exon | 71942215 | 71942289 | 71942215 | ID=Msa0519640-mRNA-1:exon:19776;Parent=Msa0519640-mRNA-1 |
| chr3_4 | exon | 71942811 | 71942889 | 71942811 | ID=Msa0519640-mRNA-1:exon:19775;Parent=Msa0519640-mRNA-1 |
| chr3_4 | exon | 71942988 | 71943191 | 71942988 | ID=Msa0519640-mRNA-1:exon:19774;Parent=Msa0519640-mRNA-1 |
| chr3_4 | five_prime_UTR | 71943020 | 71943191 | 71943020 | ID=Msa0519640-mRNA-1:five_prime_utr;Parent=Msa0519640-mRNA-1 |
| chr3_4 | CDS | 71942988 | 71943019 | 71942988 | ID=Msa0519640-mRNA-1:cds;Parent=Msa0519640-mRNA-1 |
| chr3_4 | CDS | 71942811 | 71942889 | 71942811 | ID=Msa0519640-mRNA-1:cds;Parent=Msa0519640-mRNA-1 |
| chr3_4 | CDS | 71942215 | 71942289 | 71942215 | ID=Msa0519640-mRNA-1:cds;Parent=Msa0519640-mRNA-1 |
| chr3_4 | CDS | 71941479 | 71941585 | 71941479 | ID=Msa0519640-mRNA-1:cds;Parent=Msa0519640-mRNA-1 |
| chr3_4 | CDS | 71940894 | 71940954 | 71940894 | ID=Msa0519640-mRNA-1:cds;Parent=Msa0519640-mRNA-1 |
| chr3_4 | CDS | 71939764 | 71939829 | 71939764 | ID=Msa0519640-mRNA-1:cds;Parent=Msa0519640-mRNA-1 |
| chr3_4 | CDS | 71939586 | 71939660 | 71939586 | ID=Msa0519640-mRNA-1:cds;Parent=Msa0519640-mRNA-1 |
| chr3_4 | CDS | 71938996 | 71939154 | 71938996 | ID=Msa0519640-mRNA-1:cds;Parent=Msa0519640-mRNA-1 |
| chr3_4 | three_prime_UTR | 71938656 | 71938995 | 71938656 | ID=Msa0519640-mRNA-1:three_prime_utr;Parent=Msa0519640-mRNA-1 |
| chr3_4 | three_prime_UTR | 71937444 | 71937731 | 71937444 | ID=Msa0519640-mRNA-1:three_prime_utr;Parent=Msa0519640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
