Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455710 | KEH35840.1 | 73.145 | 283 | 8 | 3 | 1 | 246 | 1 | 252 | 5.15e-134 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455710 | A0A072VCG9 | 73.145 | 283 | 8 | 3 | 1 | 246 | 1 | 252 | 2.46e-134 | 389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa1455710 | 0.807888 | 4.056379e-50 | -8.615850e-47 |
| Msa0042920 | Msa1455710 | 0.815402 | 9.417088e-52 | -8.615850e-47 |
| Msa1403480 | Msa1455710 | 0.811587 | 6.497072e-51 | -8.615850e-47 |
| Msa1411020 | Msa1455710 | 0.822773 | 1.980092e-53 | -8.615850e-47 |
| Msa1420490 | Msa1455710 | 0.813758 | 2.176494e-51 | -8.615850e-47 |
| Msa1423390 | Msa1455710 | 0.815981 | 6.994753e-52 | -8.615850e-47 |
| Msa1423880 | Msa1455710 | 0.817373 | 3.410788e-52 | -8.615850e-47 |
| Msa1424290 | Msa1455710 | 0.818425 | 1.973653e-52 | -8.615850e-47 |
| Msa1434350 | Msa1455710 | 0.815759 | 7.841506e-52 | -8.615850e-47 |
| Msa1439320 | Msa1455710 | 0.822694 | 2.065110e-53 | -8.615850e-47 |
| Msa1440370 | Msa1455710 | 0.815552 | 8.720149e-52 | -8.615850e-47 |
| Msa1440810 | Msa1455710 | 0.816070 | 6.682826e-52 | -8.615850e-47 |
| Msa1443060 | Msa1455710 | 0.814595 | 1.422062e-51 | -8.615850e-47 |
| Msa1448640 | Msa1455710 | 0.801795 | 7.608657e-49 | -8.615850e-47 |
| Msa1455710 | Msa1455720 | 0.864771 | 9.562700e-65 | -8.615850e-47 |
| Msa0663240 | Msa1455710 | 0.801159 | 1.026808e-48 | -8.615850e-47 |
| Msa0672690 | Msa1455710 | 0.830319 | 3.140430e-55 | -8.615850e-47 |
| Msa0688480 | Msa1455710 | 0.820950 | 5.229913e-53 | -8.615850e-47 |
| Msa0760130 | Msa1455710 | 0.806026 | 1.004725e-49 | -8.615850e-47 |
| Msa0768290 | Msa1455710 | 0.838550 | 2.690446e-57 | -8.615850e-47 |
| Msa0768370 | Msa1455710 | 0.817891 | 2.606414e-52 | -8.615850e-47 |
| Msa0776990 | Msa1455710 | 0.801116 | 1.047906e-48 | -8.615850e-47 |
| Msa0198910 | Msa1455710 | 0.812037 | 5.184633e-51 | -8.615850e-47 |
| Msa1233890 | Msa1455710 | 0.803461 | 3.448480e-49 | -8.615850e-47 |
| Msa1239530 | Msa1455710 | 0.819339 | 1.223235e-52 | -8.615850e-47 |
| Msa1284680 | Msa1455710 | 0.805878 | 1.079387e-49 | -8.615850e-47 |
| Msa1306850 | Msa1455710 | 0.806774 | 6.987335e-50 | -8.615850e-47 |
| Msa1313150 | Msa1455710 | 0.828222 | 1.013415e-54 | -8.615850e-47 |
| Msa0388960 | Msa1455710 | 0.834858 | 2.349782e-56 | -8.615850e-47 |
| Msa1000860 | Msa1455710 | 0.824909 | 6.251390e-54 | -8.615850e-47 |
| Msa1000900 | Msa1455710 | 0.805914 | 1.060560e-49 | -8.615850e-47 |
| Msa1054990 | Msa1455710 | 0.801545 | 8.560285e-49 | -8.615850e-47 |
| Msa0251640 | Msa1455710 | 0.816447 | 5.504475e-52 | -8.615850e-47 |
| Msa0278110 | Msa1455710 | 0.813924 | 2.001003e-51 | -8.615850e-47 |
| Msa1121490 | Msa1455710 | 0.819480 | 1.135899e-52 | -8.615850e-47 |
| Msa1137570 | Msa1455710 | 0.834803 | 2.426147e-56 | -8.615850e-47 |
| Msa1158310 | Msa1455710 | 0.805879 | 1.078496e-49 | -8.615850e-47 |
| Msa1162550 | Msa1455710 | -0.810571 | 1.078684e-50 | -8.615850e-47 |
| Msa0490140 | Msa1455710 | 0.810667 | 1.028640e-50 | -8.615850e-47 |
| Msa0519440 | Msa1455710 | 0.842963 | 1.875294e-58 | -8.615850e-47 |
| Msa0519450 | Msa1455710 | 0.841342 | 5.036432e-58 | -8.615850e-47 |
| Msa0519520 | Msa1455710 | 0.818056 | 2.391392e-52 | -8.615850e-47 |
| Msa0519640 | Msa1455710 | 0.906454 | 1.458243e-80 | -8.615850e-47 |
| Msa0523940 | Msa1455710 | 0.829621 | 4.646629e-55 | -8.615850e-47 |
| Msa0585230 | Msa1455710 | 0.828803 | 7.338969e-55 | -8.615850e-47 |
| Msa0844490 | Msa1455710 | 0.808882 | 2.489679e-50 | -8.615850e-47 |
| Msa0899450 | Msa1455710 | 0.803751 | 3.001482e-49 | -8.615850e-47 |
| Msa0931520 | Msa1455710 | 0.829774 | 4.265632e-55 | -8.615850e-47 |
| Msa0969520 | Msa1455710 | 0.812723 | 3.672518e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455710 | MtrunA17_Chr3g0135051 | 73.145 | 283 | 8 | 3 | 1 | 246 | 1 | 252 | 1.35e-136 | 389 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455710 | AT1G59520.2 | 48.763 | 283 | 71 | 4 | 1 | 246 | 1 | 246 | 7.22e-82 | 248 |
| Msa1455710 | AT1G59520.6 | 48.763 | 283 | 71 | 4 | 1 | 246 | 1 | 246 | 7.22e-82 | 248 |
| Msa1455710 | AT1G59520.5 | 48.763 | 283 | 71 | 4 | 1 | 246 | 1 | 246 | 3.27e-81 | 248 |
| Msa1455710 | AT1G59520.1 | 48.763 | 283 | 71 | 4 | 1 | 246 | 1 | 246 | 6.75e-81 | 248 |
| Msa1455710 | AT1G59520.4 | 48.763 | 283 | 71 | 4 | 1 | 246 | 1 | 246 | 9.88e-81 | 248 |
| Msa1455710 | AT1G59520.3 | 48.410 | 283 | 72 | 4 | 1 | 246 | 1 | 246 | 2.10e-80 | 246 |
Find 60 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTGAATTGTGTCTTTA+TGG | 0.149394 | tig0036439:+22613 | Msa1455710:three_prime_UTR |
| GCTACTAAAATTAGACATTA+TGG | 0.166827 | tig0036439:+21421 | Msa1455710:three_prime_UTR |
| AAGAAGCATTCAAACTTAAT+TGG | 0.201119 | tig0036439:+17103 | Msa1455710:CDS |
| TCTGAACTAACATTGGTTTC+AGG | 0.227271 | tig0036439:-22518 | Msa1455710:intergenic |
| CTACTAAAATTAGACATTAT+GGG | 0.283815 | tig0036439:+21422 | Msa1455710:three_prime_UTR |
| GCCCACCTGCGTACAAAATA+AGG | 0.297730 | tig0036439:-17726 | Msa1455710:intergenic |
| ATCTTTATCTCCTATATATA+AGG | 0.306922 | tig0036439:+19056 | Msa1455710:CDS |
| ATCTTTATCTCCTATATATA+AGG | 0.306922 | tig0036439:+19266 | Msa1455710:CDS |
| GTGCAGGTTTCTCGAGGTTC+TGG | 0.319194 | tig0036439:+17675 | Msa1455710:intron |
| ACTACATTTACCTTATATAT+AGG | 0.322902 | tig0036439:-19066 | Msa1455710:intergenic |
| ACTACATTTACCTTATATAT+AGG | 0.322902 | tig0036439:-19276 | Msa1455710:intergenic |
| TAGATATGAATTGTTGAGTA+TGG | 0.351632 | tig0036439:+17078 | Msa1455710:intron |
| GTGTAACTGTTGCAATTTGC+AGG | 0.351957 | tig0036439:+18469 | Msa1455710:CDS |
| CACGACTTTAAGGGTGTGTT+TGG | 0.353171 | tig0036439:-16829 | Msa1455710:intergenic |
| ATGTATCCCTCCCAGCTTGA+TGG | 0.384464 | tig0036439:-19035 | Msa1455710:intergenic |
| ATGTATCCCTCCCAGCTTGA+TGG | 0.384464 | tig0036439:-19245 | Msa1455710:intergenic |
| TATATCTTTCTCTAGTCAAC+AGG | 0.403251 | tig0036439:+19002 | Msa1455710:intron |
| TATATCTTTCTCTAGTCAAC+AGG | 0.403251 | tig0036439:+19212 | Msa1455710:CDS |
| AAAACCTTACACGACTTTAA+GGG | 0.416685 | tig0036439:-16838 | Msa1455710:intergenic |
| CACACCCTTAAAGTCGTGTA+AGG | 0.437266 | tig0036439:+16834 | Msa1455710:five_prime_UTR |
| GGAAACAACACCTGCTTATC+CGG | 0.439105 | tig0036439:+20526 | Msa1455710:CDS |
| AAATAAGGATCAACACTCTC+TGG | 0.443748 | tig0036439:-17711 | Msa1455710:intergenic |
| TTACTTTCAAGATTTAATCA+TGG | 0.462402 | tig0036439:+22705 | Msa1455710:three_prime_UTR |
| TCAATTGCAAAACATATATC+CGG | 0.475756 | tig0036439:-20545 | Msa1455710:intergenic |
| GTTGTTCTTAATGCACATGA+TGG | 0.482727 | tig0036439:+21057 | Msa1455710:CDS |
| CTTCGATAGACGTGGATTGG+AGG | 0.484544 | tig0036439:+18406 | Msa1455710:CDS |
| AAACTTCGATAGACGTGGAT+TGG | 0.487018 | tig0036439:+18403 | Msa1455710:CDS |
| GAATAATGAATGTACCTTGA+TGG | 0.487839 | tig0036439:-16975 | Msa1455710:intergenic |
| AATTGAAAATTGACACGACT+TGG | 0.495981 | tig0036439:-20376 | Msa1455710:intergenic |
| AATTCATTCTGAACTAACAT+TGG | 0.500216 | tig0036439:-22525 | Msa1455710:intergenic |
| GTAGAACTAGTACAAACTTC+CGG | 0.503055 | tig0036439:-21138 | Msa1455710:intergenic |
| TTGAAAAGATTATGTATCAT+CGG | 0.503518 | tig0036439:-22636 | Msa1455710:intergenic |
| TTCTTCAGAACCATCAAGCT+GGG | 0.515455 | tig0036439:+19025 | Msa1455710:CDS |
| TTCTTCAGAACCATCAAGCT+GGG | 0.515455 | tig0036439:+19235 | Msa1455710:CDS |
| TTGTTCTTAATGCACATGAT+GGG | 0.519594 | tig0036439:+21058 | Msa1455710:CDS |
| TTTGAGAAAATTAAACTCAA+GGG | 0.519914 | tig0036439:+21478 | Msa1455710:three_prime_UTR |
| AAACATATATCCGGATAAGC+AGG | 0.524022 | tig0036439:-20536 | Msa1455710:intergenic |
| GGCAGCATTTCCTAGTGATA+AGG | 0.526186 | tig0036439:+21080 | Msa1455710:CDS |
| GAGAAATGGAATTAACAGTT+CGG | 0.527781 | tig0036439:-16873 | Msa1455710:intergenic |
| GTTCTTCAGAACCATCAAGC+TGG | 0.528980 | tig0036439:+19024 | Msa1455710:CDS |
| GTTCTTCAGAACCATCAAGC+TGG | 0.528980 | tig0036439:+19234 | Msa1455710:CDS |
| TAAAATTAGACATTATGGGT+TGG | 0.541342 | tig0036439:+21426 | Msa1455710:three_prime_UTR |
| AGTAGCTCTTCTGATAAGAA+AGG | 0.542230 | tig0036439:-21513 | Msa1455710:intergenic |
| TATTACCACAGCATCAAAAG+TGG | 0.546528 | tig0036439:-20579 | Msa1455710:intergenic |
| AATAATGAATGTACCTTGAT+GGG | 0.551995 | tig0036439:-16974 | Msa1455710:intergenic |
| TCATTTGACACCTTATCACT+AGG | 0.568955 | tig0036439:-21090 | Msa1455710:intergenic |
| TGTACGCAGGTGGGCACCTG+AGG | 0.571914 | tig0036439:+17734 | Msa1455710:CDS |
| TCAGAACCATCAAGCTGGGA+GGG | 0.589611 | tig0036439:+19029 | Msa1455710:CDS |
| TCAGAACCATCAAGCTGGGA+GGG | 0.589611 | tig0036439:+19239 | Msa1455710:CDS |
| TACTAGTGATGACTCCTCGC+CGG | 0.591620 | tig0036439:+21119 | Msa1455710:CDS |
| AAATTAAACTCAAGGGCAAG+AGG | 0.604383 | tig0036439:+21485 | Msa1455710:three_prime_UTR |
| AATGGAATTAACAGTTCGGT+CGG | 0.618894 | tig0036439:-16869 | Msa1455710:intergenic |
| AGCGATTTCACTTATGCACA+TGG | 0.620912 | tig0036439:+21373 | Msa1455710:three_prime_UTR |
| ATGGTGGAGAAAGCCCATCA+AGG | 0.638565 | tig0036439:+16961 | Msa1455710:CDS |
| TTCAGAACCATCAAGCTGGG+AGG | 0.645173 | tig0036439:+19028 | Msa1455710:CDS |
| TTCAGAACCATCAAGCTGGG+AGG | 0.645173 | tig0036439:+19238 | Msa1455710:CDS |
| GGATGAAACTTCGATAGACG+TGG | 0.662637 | tig0036439:+18398 | Msa1455710:CDS |
| TGTTCTTAATGCACATGATG+GGG | 0.675929 | tig0036439:+21059 | Msa1455710:CDS |
| ATATAGTTAAACAAGATATG+CGG | 0.721323 | tig0036439:-21290 | Msa1455700:intergenic |
| ACTAGTACAAACTTCCGGCG+AGG | 0.726490 | tig0036439:-21133 | Msa1455700:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATTAAAAAAGTTATT+CGG | - | tig0036439:18356-18375 | Msa1455710:intergenic | 10.0% |
| !!! | TTTTCAATTATGAGATTTTA+CGG | - | tig0036439:16929-16948 | Msa1455710:intergenic | 15.0% |
| !!! | TTTTCTTCAAATTATATAAC+CGG | - | tig0036439:17323-17342 | Msa1455710:intergenic | 15.0% |
| !! | ATAATTTGAAGAAAAAACAA+TGG | + | tig0036439:17328-17347 | Msa1455710:intron | 15.0% |
| !! | CTAAAATCATTTAAGTATAT+TGG | + | tig0036439:18285-18304 | Msa1455710:intron | 15.0% |
| !!! | ATACAAGACTTTTAAATTTT+TGG | + | tig0036439:18944-18963 | Msa1455710:intron | 15.0% |
| !!! | TACAAGACTTTTAAATTTTT+GGG | + | tig0036439:18945-18964 | Msa1455710:intron | 15.0% |
| !!! | ATACAAGACTTTTAAATTTT+TGG | + | tig0036439:18944-18963 | Msa1455710:intron | 15.0% |
| !!! | TACAAGACTTTTAAATTTTT+GGG | + | tig0036439:18945-18964 | Msa1455710:intron | 15.0% |
| !!! | TATTTTTAGTGTTATCATTA+GGG | - | tig0036439:19907-19926 | Msa1455710:intergenic | 15.0% |
| !!! | ATATTTTTAGTGTTATCATT+AGG | - | tig0036439:19908-19927 | Msa1455710:intergenic | 15.0% |
| !!! | TTCATTTTCTTTTAAGTTTA+TGG | + | tig0036439:21210-21229 | Msa1455710:three_prime_UTR | 15.0% |
| !!! | TTTGCTTTTTAAAAACAATT+TGG | + | tig0036439:22456-22475 | Msa1455710:three_prime_UTR | 15.0% |
| !!! | TTGAAATGGATATGAAATTT+TGG | + | tig0036439:17161-17180 | Msa1455710:intron | 20.0% |
| !!! | TTTGATTTATATTTTGTTCG+CGG | + | tig0036439:17193-17212 | Msa1455710:intron | 20.0% |
| !! | AAAATAGTGGTAAAATAACT+CGG | - | tig0036439:17552-17571 | Msa1455710:intergenic | 20.0% |
| !!! | AGTTATTTTACCACTATTTT+TGG | + | tig0036439:17552-17571 | Msa1455710:intron | 20.0% |
| !! | GACAATAATTCATACAAAAA+GGG | - | tig0036439:17631-17650 | Msa1455710:intergenic | 20.0% |
| !!! | TACGTAGACATTTTTTTTTA+AGG | - | tig0036439:18652-18671 | Msa1455710:intergenic | 20.0% |
| !! | GTTAAAAAGTTACTCTAATT+AGG | - | tig0036439:18872-18891 | Msa1455710:intergenic | 20.0% |
| !!! | TAAATTTTTGGGTTATTATC+TGG | + | tig0036439:18956-18975 | Msa1455710:intron | 20.0% |
| !!! | AAATTTTTGGGTTATTATCT+GGG | + | tig0036439:18957-18976 | Msa1455710:intron | 20.0% |
| !! | ATCTTTATCTCCTATATATA+AGG | + | tig0036439:19056-19075 | Msa1455710:CDS | 20.0% |
| !! | ACTACATTTACCTTATATAT+AGG | - | tig0036439:19069-19088 | Msa1455710:intergenic | 20.0% |
| !!! | TAAATTTTTGGGTTATTATC+TGG | + | tig0036439:18956-18975 | Msa1455710:intron | 20.0% |
| !!! | AAATTTTTGGGTTATTATCT+GGG | + | tig0036439:18957-18976 | Msa1455710:intron | 20.0% |
| !! | ATCTTTATCTCCTATATATA+AGG | + | tig0036439:19056-19075 | Msa1455710:CDS | 20.0% |
| !! | ACTACATTTACCTTATATAT+AGG | - | tig0036439:19069-19088 | Msa1455710:intergenic | 20.0% |
| !! | TTTAATGAATACTTGTTTAC+CGG | + | tig0036439:19088-19107 | Msa1455710:intron | 20.0% |
| !! | TTACAAACAATTACAAGTAA+AGG | - | tig0036439:19341-19360 | Msa1455710:intergenic | 20.0% |
| !!! | TCAAAAATCTATTTTTCTTC+AGG | - | tig0036439:19418-19437 | Msa1455710:intergenic | 20.0% |
| !!! | TTTTGGTGAATTTGAAAATA+AGG | + | tig0036439:19735-19754 | Msa1455710:intron | 20.0% |
| !! | AAAATAAAATAATGCTGAGT+TGG | + | tig0036439:19966-19985 | Msa1455710:intron | 20.0% |
| !!! | TTTGAATCTCATTTTATGTT+TGG | + | tig0036439:20615-20634 | Msa1455710:intron | 20.0% |
| !!! | ATTTTTGAATTAACTAAGAC+AGG | + | tig0036439:20672-20691 | Msa1455710:intron | 20.0% |
| !!! | AGAATGCAAAAAGTATTTAA+GGG | - | tig0036439:20957-20976 | Msa1455710:intergenic | 20.0% |
| !! | ATATAGTTAAACAAGATATG+CGG | - | tig0036439:21293-21312 | Msa1455710:intergenic | 20.0% |
| !! | CTACTAAAATTAGACATTAT+GGG | + | tig0036439:21422-21441 | Msa1455710:three_prime_UTR | 20.0% |
| !!! | TTTTGAGAAAATTAAACTCA+AGG | + | tig0036439:21477-21496 | Msa1455710:three_prime_UTR | 20.0% |
| !! | TTTGAGAAAATTAAACTCAA+GGG | + | tig0036439:21478-21497 | Msa1455710:three_prime_UTR | 20.0% |
| !! | GAAATGATGAAATAAAGTAA+AGG | - | tig0036439:21819-21838 | Msa1455710:intergenic | 20.0% |
| !! | GGGAATAATATATAACAAAT+GGG | - | tig0036439:22040-22059 | Msa1455710:intergenic | 20.0% |
| !! | TGGGAATAATATATAACAAA+TGG | - | tig0036439:22041-22060 | Msa1455710:intergenic | 20.0% |
| !! | TTTCGGAAATATATAGAAAA+AGG | - | tig0036439:22064-22083 | Msa1455710:intergenic | 20.0% |
| !! | TTTCTATATATTTCCGAAAT+AGG | + | tig0036439:22065-22084 | Msa1455710:intron | 20.0% |
| !! | AGAATTCTCTATCATAAATT+GGG | - | tig0036439:22306-22325 | Msa1455710:intergenic | 20.0% |
| !! | TACCTAAAAGATAATAAAAG+AGG | + | tig0036439:22328-22347 | Msa1455710:intron | 20.0% |
| !! | AAATTTGAATTGTGTCTTTA+TGG | + | tig0036439:22613-22632 | Msa1455710:three_prime_UTR | 20.0% |
| !! | TTGAAAAGATTATGTATCAT+CGG | - | tig0036439:22639-22658 | Msa1455710:intergenic | 20.0% |
| !!! | CTATTTTCAATATTTTCTCA+TGG | + | tig0036439:22670-22689 | Msa1455710:three_prime_UTR | 20.0% |
| !! | TTACTTTCAAGATTTAATCA+TGG | + | tig0036439:22705-22724 | Msa1455710:three_prime_UTR | 20.0% |
| ! | TCATAATTGAAAAAGATGCT+TGG | + | tig0036439:16936-16955 | Msa1455710:exon | 25.0% |
| ! | AATAATGAATGTACCTTGAT+GGG | - | tig0036439:16977-16996 | Msa1455710:intergenic | 25.0% |
| ! | TAGATATGAATTGTTGAGTA+TGG | + | tig0036439:17078-17097 | Msa1455710:intron | 25.0% |
| !!! | AAGAAGCATTCAAACTTAAT+TGG | + | tig0036439:17103-17122 | Msa1455710:CDS | 25.0% |
| ! | TGTTTGATAGGAAATGAAAA+GGG | - | tig0036439:17280-17299 | Msa1455710:intergenic | 25.0% |
| ! | ACATACAAATCCAAAAATAG+TGG | - | tig0036439:17565-17584 | Msa1455710:intergenic | 25.0% |
| !! | TTGGATTTGTATGTTGTTTA+TGG | + | tig0036439:17571-17590 | Msa1455710:intron | 25.0% |
| ! | CGACAATAATTCATACAAAA+AGG | - | tig0036439:17632-17651 | Msa1455710:intergenic | 25.0% |
| ! | TATCGAATTTAAATTACCTC+AGG | - | tig0036439:17753-17772 | Msa1455710:intergenic | 25.0% |
| ! | ACTATTTGATTGTATGAACA+AGG | - | tig0036439:17974-17993 | Msa1455710:intergenic | 25.0% |
| ! | TTCATACAATCAAATAGTGA+TGG | + | tig0036439:17976-17995 | Msa1455710:intron | 25.0% |
| !!! | TTTTTTAAAGTCAATCCTAG+AGG | - | tig0036439:18084-18103 | Msa1455710:intergenic | 25.0% |
| !! | GGATTGACTTTAAAAAAAAC+CGG | + | tig0036439:18087-18106 | Msa1455710:intron | 25.0% |
| ! | AAATAAGTGCATCACTTAAT+TGG | + | tig0036439:18604-18623 | Msa1455710:intron | 25.0% |
| !! | TGTATGATTTTATCCGTATA+TGG | + | tig0036439:18725-18744 | Msa1455710:intron | 25.0% |
| !! | CTTTTCATGTTAATATTGGT+CGG | + | tig0036439:18810-18829 | Msa1455710:intron | 25.0% |
| ! | ATAATGACTTATAGCATACA+AGG | - | tig0036439:19590-19609 | Msa1455710:intergenic | 25.0% |
| !!! | ATCGGTTTTTGCTTAAATAT+CGG | + | tig0036439:19856-19875 | Msa1455710:intron | 25.0% |
| !!! | TTAAGTCACTTTTATGTTTC+TGG | + | tig0036439:20114-20133 | Msa1455710:intron | 25.0% |
| !!! | TTTTCAATTGGACTCTAAAA+AGG | + | tig0036439:20390-20409 | Msa1455710:CDS | 25.0% |
| ! | ACCTTTATTGATATGTCTAT+AGG | + | tig0036439:20499-20518 | Msa1455710:intron | 25.0% |
| ! | TCCTATAGACATATCAATAA+AGG | - | tig0036439:20503-20522 | Msa1455710:intergenic | 25.0% |
| ! | TCAATTGCAAAACATATATC+CGG | - | tig0036439:20548-20567 | Msa1455710:intergenic | 25.0% |
| ! | TTTAAGCATCTAATATCCAT+TGG | + | tig0036439:20642-20661 | Msa1455710:intron | 25.0% |
| ! | TTAAGCATCTAATATCCATT+GGG | + | tig0036439:20643-20662 | Msa1455710:intron | 25.0% |
| ! | TTCAAAAATATGATTCCCAA+TGG | - | tig0036439:20661-20680 | Msa1455710:intergenic | 25.0% |
| ! | AACGAGTACATATTCTTTAA+TGG | - | tig0036439:20798-20817 | Msa1455710:intergenic | 25.0% |
| ! | ACATGATTCACAAACAAAAA+AGG | - | tig0036439:20934-20953 | Msa1455710:intergenic | 25.0% |
| !!! | CAGAATGCAAAAAGTATTTA+AGG | - | tig0036439:20958-20977 | Msa1455710:intergenic | 25.0% |
| !!! | CTTAAATACTTTTTGCATTC+TGG | + | tig0036439:20956-20975 | Msa1455710:intron | 25.0% |
| ! | TACTACGAAAAAAGATATCA+AGG | + | tig0036439:21158-21177 | Msa1455710:CDS | 25.0% |
| !!! | CTAATTTTAGTAGCAAGTAT+AGG | - | tig0036439:21415-21434 | Msa1455710:intergenic | 25.0% |
| ! | GCTACTAAAATTAGACATTA+TGG | + | tig0036439:21421-21440 | Msa1455710:three_prime_UTR | 25.0% |
| ! | TAAAATTAGACATTATGGGT+TGG | + | tig0036439:21426-21445 | Msa1455710:three_prime_UTR | 25.0% |
| !! | AAAAAAGAGCGTAATATTGA+GGG | - | tig0036439:21582-21601 | Msa1455710:intergenic | 25.0% |
| !! | AAAAAAAGAGCGTAATATTG+AGG | - | tig0036439:21583-21602 | Msa1455710:intergenic | 25.0% |
| ! | GGAAATATATAGAAAAAGGT+GGG | - | tig0036439:22060-22079 | Msa1455710:intergenic | 25.0% |
| ! | GAGAATTCTCTATCATAAAT+TGG | - | tig0036439:22307-22326 | Msa1455710:intergenic | 25.0% |
| !! | AGCCTCTTTTATTATCTTTT+AGG | - | tig0036439:22333-22352 | Msa1455710:intergenic | 25.0% |
| ! | AATTCATTCTGAACTAACAT+TGG | - | tig0036439:22528-22547 | Msa1455710:intergenic | 25.0% |
| !! | CAGAATGAATTTTCATACAT+TGG | + | tig0036439:22537-22556 | Msa1455710:three_prime_UTR | 25.0% |
| !! | TGAATTTTCATACATTGGTA+TGG | + | tig0036439:22542-22561 | Msa1455710:three_prime_UTR | 25.0% |
| !!! | CTCTCTTCTTATTTTCTTCT+CGG | + | tig0036439:16804-16823 | Msa1455710:five_prime_UTR | 30.0% |
| AAAACCTTACACGACTTTAA+GGG | - | tig0036439:16841-16860 | Msa1455710:intergenic | 30.0% | |
| AAAAACCTTACACGACTTTA+AGG | - | tig0036439:16842-16861 | Msa1455710:intergenic | 30.0% | |
| GAGAAATGGAATTAACAGTT+CGG | - | tig0036439:16876-16895 | Msa1455710:intergenic | 30.0% | |
| GAATAATGAATGTACCTTGA+TGG | - | tig0036439:16978-16997 | Msa1455710:intergenic | 30.0% | |
| TTCATATCCATTTCAACATC+AGG | - | tig0036439:17157-17176 | Msa1455710:intergenic | 30.0% | |
| ! | AAAAGGGAGATACCAATTTT+CGG | - | tig0036439:17264-17283 | Msa1455710:intergenic | 30.0% |
| GTGTTTGATAGGAAATGAAA+AGG | - | tig0036439:17281-17300 | Msa1455710:intergenic | 30.0% | |
| ! | AAATTATATAACCGGTGTCA+AGG | - | tig0036439:17315-17334 | Msa1455710:intergenic | 30.0% |
| !! | TTTTAGAAGTTTTTGTGTGC+AGG | + | tig0036439:17659-17678 | Msa1455710:intron | 30.0% |
| ATTCGATACTGTTTAAACTC+CGG | - | tig0036439:17788-17807 | Msa1455710:intergenic | 30.0% | |
| TCATCATGTCAAATGTATGA+AGG | - | tig0036439:17871-17890 | Msa1455710:intergenic | 30.0% | |
| !!! | CAGAGAAGTGAAAGATTTTT+TGG | + | tig0036439:18053-18072 | Msa1455710:intron | 30.0% |
| ATAATAACACAAGGTCTAAC+CGG | - | tig0036439:18109-18128 | Msa1455710:intergenic | 30.0% | |
| TTCTCAAGCATAATAACACA+AGG | - | tig0036439:18118-18137 | Msa1455710:intergenic | 30.0% | |
| !! | TGGATTGTGATAAGTATTGA+TGG | + | tig0036439:18192-18211 | Msa1455710:intron | 30.0% |
| !! | GATAAGTATTGATGGCATTA+AGG | + | tig0036439:18200-18219 | Msa1455710:intron | 30.0% |
| AGGTGTTTACTTATTATGTG+TGG | + | tig0036439:18220-18239 | Msa1455710:intron | 30.0% | |
| ! | TGGATAGCTTTTATGATGTT+AGG | + | tig0036439:18305-18324 | Msa1455710:intron | 30.0% |
| !! | TCTATTTTCTCAAAGTGCTA+CGG | + | tig0036439:18690-18709 | Msa1455710:intron | 30.0% |
| CCAATATTAACATGAAAAGC+TGG | - | tig0036439:18809-18828 | Msa1455710:intergenic | 30.0% | |
| ! | CCAGCTTTTCATGTTAATAT+TGG | + | tig0036439:18806-18825 | Msa1455710:intron | 30.0% |
| CTAATTAGGATCAACAGAAA+AGG | - | tig0036439:18858-18877 | Msa1455710:intergenic | 30.0% | |
| TATATCTTTCTCTAGTCAAC+AGG | + | tig0036439:19002-19021 | Msa1455710:intron | 30.0% | |
| TATATCTTTCTCTAGTCAAC+AGG | + | tig0036439:19002-19021 | Msa1455710:intron | 30.0% | |
| GGAAGTAAAGATAATTCAAC+CGG | - | tig0036439:19320-19339 | Msa1455710:intergenic | 30.0% | |
| ! | TTTGTTAACCCAAAACCTTT+TGG | + | tig0036439:19478-19497 | Msa1455710:intron | 30.0% |
| TTCTGTAAAGATATCGTATG+AGG | - | tig0036439:19621-19640 | Msa1455710:intergenic | 30.0% | |
| !!! | TCTCTTTTTTGTTATCCCTT+TGG | + | tig0036439:19649-19668 | Msa1455710:intron | 30.0% |
| ATATCCATATCTGTTCCAAA+GGG | - | tig0036439:19667-19686 | Msa1455710:intergenic | 30.0% | |
| !! | ATGTTAATTTGCACATGACA+TGG | + | tig0036439:19929-19948 | Msa1455710:intron | 30.0% |
| TATTTATTTCATCCGATCTG+TGG | + | tig0036439:20280-20299 | Msa1455710:intron | 30.0% | |
| ATTAATAACACTGGCAAACA+TGG | + | tig0036439:20311-20330 | Msa1455710:intron | 30.0% | |
| AATTGAAAATTGACACGACT+TGG | - | tig0036439:20379-20398 | Msa1455710:intergenic | 30.0% | |
| ! | AAGTCGTGTCAATTTTCAAT+TGG | + | tig0036439:20378-20397 | Msa1455710:CDS | 30.0% |
| ATTGATATGTCTATAGGAAG+TGG | + | tig0036439:20505-20524 | Msa1455710:intron | 30.0% | |
| TAAAAATGTGGGGAATTTCA+AGG | - | tig0036439:20756-20775 | Msa1455710:intergenic | 30.0% | |
| TTGCACGTCAATAAAAATGT+GGG | - | tig0036439:20767-20786 | Msa1455710:intergenic | 30.0% | |
| TTGTTCTTAATGCACATGAT+GGG | + | tig0036439:21058-21077 | Msa1455710:CDS | 30.0% | |
| !!! | GATTCTTTTTTCGTCTTTCA+CGG | - | tig0036439:21926-21945 | Msa1455710:intergenic | 30.0% |
| AAGAATCCAACTACATTGAT+TGG | + | tig0036439:21939-21958 | Msa1455710:intron | 30.0% | |
| CGGAAATATATAGAAAAAGG+TGG | - | tig0036439:22061-22080 | Msa1455710:intergenic | 30.0% | |
| ATATTTCCGAAATAGGAGTA+AGG | + | tig0036439:22072-22091 | Msa1455710:intron | 30.0% | |
| GTCTAATCAGGAAATGATAA+CGG | + | tig0036439:22131-22150 | Msa1455710:intron | 30.0% | |
| TCTAATCAGGAAATGATAAC+GGG | + | tig0036439:22132-22151 | Msa1455710:intron | 30.0% | |
| ! | GTAGAATTAGTTCTTTCACT+TGG | - | tig0036439:22227-22246 | Msa1455710:intergenic | 30.0% |
| TGAAAGAACTAATTCTACAG+AGG | + | tig0036439:22229-22248 | Msa1455710:intron | 30.0% | |
| ATCATAAATTGGGAACGAAT+AGG | - | tig0036439:22296-22315 | Msa1455710:intergenic | 30.0% | |
| AATGGAATTAACAGTTCGGT+CGG | - | tig0036439:16872-16891 | Msa1455710:intergenic | 35.0% | |
| ! | CAGTTTTCAGAGAAGAGAAA+TGG | - | tig0036439:16890-16909 | Msa1455710:intergenic | 35.0% |
| AATTCGATTCATGCAACATG+CGG | + | tig0036439:17036-17055 | Msa1455710:intron | 35.0% | |
| ! | CGTTTTCTTTGTCCGAAAAT+TGG | + | tig0036439:17249-17268 | Msa1455710:intron | 35.0% |
| ACACCTTCTATCATAAGTGT+TGG | + | tig0036439:17521-17540 | Msa1455710:intron | 35.0% | |
| AAATAAGGATCAACACTCTC+TGG | - | tig0036439:17714-17733 | Msa1455710:intergenic | 35.0% | |
| !!! | TTGATCCTTATTTTGTACGC+AGG | + | tig0036439:17721-17740 | Msa1455710:CDS | 35.0% |
| TTCGATATATACAATGCTGC+CGG | + | tig0036439:17766-17785 | Msa1455710:intron | 35.0% | |
| ! | ATTTTACCCAATGTTTCCGT+CGG | + | tig0036439:17905-17924 | Msa1455710:intron | 35.0% |
| CGATGAAACTTTCACTTCTT+TGG | - | tig0036439:17945-17964 | Msa1455710:intergenic | 35.0% | |
| AATGTACTTAGCATACCTCA+TGG | + | tig0036439:18136-18155 | Msa1455710:intron | 35.0% | |
| ! | GCTTTTATGATGTTAGGCTT+TGG | + | tig0036439:18311-18330 | Msa1455710:intron | 35.0% |
| ! | CAATGGTGGAAACGAAATTA+AGG | - | tig0036439:18505-18524 | Msa1455710:intergenic | 35.0% |
| TGAATAGAAGCGACCATATA+CGG | - | tig0036439:18741-18760 | Msa1455710:intergenic | 35.0% | |
| AGAACTAGCAGTCATTGTAT+AGG | - | tig0036439:18773-18792 | Msa1455710:intergenic | 35.0% | |
| GATTGAAACATTCTGCAACT+AGG | + | tig0036439:18902-18921 | Msa1455710:intron | 35.0% | |
| GATTGAAACATTCTGCAACT+AGG | + | tig0036439:18902-18921 | Msa1455710:intron | 35.0% | |
| GGATATTCTCAAACACGAAA+TGG | - | tig0036439:19397-19416 | Msa1455710:intergenic | 35.0% | |
| ! | TCCTTCTTTGGGAGTTAAAT+TGG | + | tig0036439:19514-19533 | Msa1455710:intron | 35.0% |
| ACCAATTTAACTCCCAAAGA+AGG | - | tig0036439:19518-19537 | Msa1455710:intergenic | 35.0% | |
| ACCACGAAGAAGCTAAATTT+GGG | - | tig0036439:19556-19575 | Msa1455710:intergenic | 35.0% | |
| AACCACGAAGAAGCTAAATT+TGG | - | tig0036439:19557-19576 | Msa1455710:intergenic | 35.0% | |
| !! | TTATCCCTTTGGAACAGATA+TGG | + | tig0036439:19660-19679 | Msa1455710:intron | 35.0% |
| CATATCCATATCTGTTCCAA+AGG | - | tig0036439:19668-19687 | Msa1455710:intergenic | 35.0% | |
| ! | TCCTGCAATCATCACAATTT+TGG | + | tig0036439:19718-19737 | Msa1455710:intron | 35.0% |
| ACCAAAATTGTGATGATTGC+AGG | - | tig0036439:19722-19741 | Msa1455710:intergenic | 35.0% | |
| ! | TTTTTGCATATCGGCGATAT+CGG | + | tig0036439:19838-19857 | Msa1455710:intron | 35.0% |
| TATGAAGTGAAGAGAGAAGA+TGG | - | tig0036439:20069-20088 | Msa1455710:intergenic | 35.0% | |
| GCTTCTGCTATTAATAACAC+TGG | + | tig0036439:20302-20321 | Msa1455710:intron | 35.0% | |
| AAACATATATCCGGATAAGC+AGG | - | tig0036439:20539-20558 | Msa1455710:intergenic | 35.0% | |
| TATTACCACAGCATCAAAAG+TGG | - | tig0036439:20582-20601 | Msa1455710:intergenic | 35.0% | |
| ATAGCTATGCTTTATCTTGC+TGG | + | tig0036439:20709-20728 | Msa1455710:intron | 35.0% | |
| TAGCTATGCTTTATCTTGCT+GGG | + | tig0036439:20710-20729 | Msa1455710:intron | 35.0% | |
| TGCACGTCAATAAAAATGTG+GGG | - | tig0036439:20766-20785 | Msa1455710:intergenic | 35.0% | |
| GTTGCACGTCAATAAAAATG+TGG | - | tig0036439:20768-20787 | Msa1455710:intergenic | 35.0% | |
| !! | ACGTCTTATTTCACATTGTG+AGG | + | tig0036439:20878-20897 | Msa1455710:intron | 35.0% |
| GTAGGGAAATGGAATTACAA+AGG | - | tig0036439:21005-21024 | Msa1455710:intergenic | 35.0% | |
| TTGTAATTCCATTTCCCTAC+AGG | + | tig0036439:21005-21024 | Msa1455710:intron | 35.0% | |
| TCTTTCAGTCAAAACCTGTA+GGG | - | tig0036439:21022-21041 | Msa1455710:intergenic | 35.0% | |
| GTTGTTCTTAATGCACATGA+TGG | + | tig0036439:21057-21076 | Msa1455710:CDS | 35.0% | |
| TGTTCTTAATGCACATGATG+GGG | + | tig0036439:21059-21078 | Msa1455710:CDS | 35.0% | |
| TCATTTGACACCTTATCACT+AGG | - | tig0036439:21093-21112 | Msa1455710:intergenic | 35.0% | |
| GTAGAACTAGTACAAACTTC+CGG | - | tig0036439:21141-21160 | Msa1455710:intergenic | 35.0% | |
| AAATTAAACTCAAGGGCAAG+AGG | + | tig0036439:21485-21504 | Msa1455710:three_prime_UTR | 35.0% | |
| AGTAGCTCTTCTGATAAGAA+AGG | - | tig0036439:21516-21535 | Msa1455710:intergenic | 35.0% | |
| CTCAATCCCTATTAGTTAGT+CGG | + | tig0036439:21544-21563 | Msa1455710:intron | 35.0% | |
| TCAATCCCTATTAGTTAGTC+GGG | + | tig0036439:21545-21564 | Msa1455710:intron | 35.0% | |
| CAGTATCCAATCAATGTAGT+TGG | - | tig0036439:21948-21967 | Msa1455710:intergenic | 35.0% | |
| ! | TACATTGATTGGATACTGCT+GGG | + | tig0036439:21950-21969 | Msa1455710:intron | 35.0% |
| AATCAGTATACTTTCTGCGT+AGG | - | tig0036439:21980-21999 | Msa1455710:intergenic | 35.0% | |
| AAAGATACTCACTCACATGT+TGG | + | tig0036439:22197-22216 | Msa1455710:intron | 35.0% | |
| ! | AACTAATTCTACAGAGGTAC+TGG | + | tig0036439:22235-22254 | Msa1455710:intron | 35.0% |
| TTAACCAGTTGAAAGAACAC+AGG | + | tig0036439:22376-22395 | Msa1455710:intron | 35.0% | |
| TAACCAGTTGAAAGAACACA+GGG | + | tig0036439:22377-22396 | Msa1455710:intron | 35.0% | |
| ! | CATTAGTTTAGAGCCTAAGA+AGG | - | tig0036439:22425-22444 | Msa1455710:intergenic | 35.0% |
| !! | TCTGAACTAACATTGGTTTC+AGG | - | tig0036439:22521-22540 | Msa1455710:intergenic | 35.0% |
| !!! | CCGCTACTTTTTCTATTGAT+GGG | - | tig0036439:22593-22612 | Msa1455710:intergenic | 35.0% |
| CCCATCAATAGAAAAAGTAG+CGG | + | tig0036439:22590-22609 | Msa1455710:three_prime_UTR | 35.0% | |
| !!! | TCCGCTACTTTTTCTATTGA+TGG | - | tig0036439:22594-22613 | Msa1455710:intergenic | 35.0% |
| TTGAAAAAGATGCTTGGCGA+TGG | + | tig0036439:16942-16961 | Msa1455710:exon | 40.0% | |
| AGATGCTCCTGATGTTGAAA+TGG | + | tig0036439:17147-17166 | Msa1455710:intron | 40.0% | |
| !! | CAGTATCGATGTGTAAGTGT+TGG | - | tig0036439:17410-17429 | Msa1455710:intergenic | 40.0% |
| !! | CACTTATGATAGAAGGTGTC+TGG | - | tig0036439:17520-17539 | Msa1455710:intergenic | 40.0% |
| GCACCAACACTTATGATAGA+AGG | - | tig0036439:17527-17546 | Msa1455710:intergenic | 40.0% | |
| !!! | ATCCTTATTTTGTACGCAGG+TGG | + | tig0036439:17724-17743 | Msa1455710:CDS | 40.0% |
| !!! | TCCTTATTTTGTACGCAGGT+GGG | + | tig0036439:17725-17744 | Msa1455710:CDS | 40.0% |
| ATGTATGAAGGACGCATACA+AGG | - | tig0036439:17859-17878 | Msa1455710:intergenic | 40.0% | |
| ATGATTCCGACGGAAACATT+GGG | - | tig0036439:17914-17933 | Msa1455710:intergenic | 40.0% | |
| AATGATTCCGACGGAAACAT+TGG | - | tig0036439:17915-17934 | Msa1455710:intergenic | 40.0% | |
| GGAGATGTAAATGATTCCGA+CGG | - | tig0036439:17924-17943 | Msa1455710:intergenic | 40.0% | |
| !!! | GATTTTTTGGTCTGACCTCT+AGG | + | tig0036439:18066-18085 | Msa1455710:intron | 40.0% |
| ! | CCAACTAATTTGAAGCCATG+AGG | - | tig0036439:18154-18173 | Msa1455710:intergenic | 40.0% |
| CCTCATGGCTTCAAATTAGT+TGG | + | tig0036439:18151-18170 | Msa1455710:intron | 40.0% | |
| ATCCAACTCATGCTATACCA+AGG | - | tig0036439:18177-18196 | Msa1455710:intergenic | 40.0% | |
| ATCCACTAAGTTGCTCAACT+GGG | - | tig0036439:18382-18401 | Msa1455710:intergenic | 40.0% | |
| AAACTTCGATAGACGTGGAT+TGG | + | tig0036439:18403-18422 | Msa1455710:CDS | 40.0% | |
| GTGTAACTGTTGCAATTTGC+AGG | + | tig0036439:18469-18488 | Msa1455710:CDS | 40.0% | |
| TTAGACAAGGTGAAGCACAA+TGG | - | tig0036439:18522-18541 | Msa1455710:intergenic | 40.0% | |
| TTCACCTTGTCTAACCTGTT+AGG | + | tig0036439:18528-18547 | Msa1455710:intron | 40.0% | |
| CTTAATTGGTGCACAGTCTA+CGG | + | tig0036439:18618-18637 | Msa1455710:intron | 40.0% | |
| ! | TTCTCAAAGTGCTACGGAAA+TGG | + | tig0036439:18696-18715 | Msa1455710:intron | 40.0% |
| GAAACATTCTGCAACTAGGA+AGG | + | tig0036439:18906-18925 | Msa1455710:intron | 40.0% | |
| TTCTTCAGAACCATCAAGCT+GGG | + | tig0036439:19025-19044 | Msa1455710:CDS | 40.0% | |
| GAAACATTCTGCAACTAGGA+AGG | + | tig0036439:18906-18925 | Msa1455710:intron | 40.0% | |
| TTCTTCAGAACCATCAAGCT+GGG | + | tig0036439:19025-19044 | Msa1455710:CDS | 40.0% | |
| TACCAACCTAGAGACAAAAG+AGG | + | tig0036439:19450-19469 | Msa1455710:intron | 40.0% | |
| ACCAACCTAGAGACAAAAGA+GGG | + | tig0036439:19451-19470 | Msa1455710:intron | 40.0% | |
| ! | ACCCAAATTTAGCTTCTTCG+TGG | + | tig0036439:19552-19571 | Msa1455710:intron | 40.0% |
| ! | AGCGGTGACTTTTTGCATAT+CGG | + | tig0036439:19829-19848 | Msa1455710:intron | 40.0% |
| TTAGTGATCAGAGATGACCT+AGG | - | tig0036439:20031-20050 | Msa1455710:intergenic | 40.0% | |
| TAATAGCAGAAGCCACAGAT+CGG | - | tig0036439:20295-20314 | Msa1455710:intergenic | 40.0% | |
| AGTCAAAACCTGTAGGGAAA+TGG | - | tig0036439:21016-21035 | Msa1455710:intergenic | 40.0% | |
| CTCTTTCAGTCAAAACCTGT+AGG | - | tig0036439:21023-21042 | Msa1455710:intergenic | 40.0% | |
| AGCGATTTCACTTATGCACA+TGG | + | tig0036439:21373-21392 | Msa1455710:three_prime_UTR | 40.0% | |
| ACTAATAGGGATTGAGGCAA+GGG | - | tig0036439:21540-21559 | Msa1455710:intergenic | 40.0% | |
| AACTAATAGGGATTGAGGCA+AGG | - | tig0036439:21541-21560 | Msa1455710:intergenic | 40.0% | |
| CGACTAACTAATAGGGATTG+AGG | - | tig0036439:21546-21565 | Msa1455710:intergenic | 40.0% | |
| CAATCCCTATTAGTTAGTCG+GGG | + | tig0036439:21546-21565 | Msa1455710:intron | 40.0% | |
| ! | AAGAGCGTAATATTGAGGGA+AGG | - | tig0036439:21578-21597 | Msa1455710:intergenic | 40.0% |
| !! | ATTGACTGACTTGCTTCCTT+CGG | + | tig0036439:21661-21680 | Msa1455710:intron | 40.0% |
| TTCCTTCGGTAGAGGATAAA+GGG | + | tig0036439:21675-21694 | Msa1455710:intron | 40.0% | |
| ! | TATGGATTGAACCTCTTCTC+CGG | - | tig0036439:21738-21757 | Msa1455710:intergenic | 40.0% |
| GATCAATCTCCTCTCGTTAT+CGG | + | tig0036439:21853-21872 | Msa1455710:intron | 40.0% | |
| CTATCGTAAGCAAGTCTTGA+AGG | - | tig0036439:21883-21902 | Msa1455710:intergenic | 40.0% | |
| ! | CTTCAAGACTTGCTTACGAT+AGG | + | tig0036439:21881-21900 | Msa1455710:intron | 40.0% |
| ! | AAGACTTGCTTACGATAGGA+GGG | + | tig0036439:21885-21904 | Msa1455710:intron | 40.0% |
| ! | CTACATTGATTGGATACTGC+TGG | + | tig0036439:21949-21968 | Msa1455710:intron | 40.0% |
| CAAATGGGTAAGACAACCAA+GGG | - | tig0036439:22025-22044 | Msa1455710:intergenic | 40.0% | |
| ACAAATGGGTAAGACAACCA+AGG | - | tig0036439:22026-22045 | Msa1455710:intergenic | 40.0% | |
| CTGCTTCCTTACTCCTATTT+CGG | - | tig0036439:22081-22100 | Msa1455710:intergenic | 40.0% | |
| AGAAGAGAAGTCGTCTAATC+AGG | + | tig0036439:22119-22138 | Msa1455710:intron | 40.0% | |
| ! | CACGACTTTAAGGGTGTGTT+TGG | - | tig0036439:16832-16851 | Msa1455710:intergenic | 45.0% |
| CACACCCTTAAAGTCGTGTA+AGG | + | tig0036439:16834-16853 | Msa1455710:five_prime_UTR | 45.0% | |
| AAAAAGATGCTTGGCGATGG+TGG | + | tig0036439:16945-16964 | Msa1455710:exon | 45.0% | |
| !! | TGTGAGTGTCGGTGTTTGAT+AGG | - | tig0036439:17292-17311 | Msa1455710:intergenic | 45.0% |
| ! | TTGGTGTCCAACATGTGTCA+CGG | - | tig0036439:17391-17410 | Msa1455710:intergenic | 45.0% |
| GCAATCACATGTGTTAGTGC+TGG | + | tig0036439:17460-17479 | Msa1455710:intron | 45.0% | |
| !! | CATGTGTTAGTGCTGGTGTT+TGG | + | tig0036439:17467-17486 | Msa1455710:intron | 45.0% |
| !! | TAGTGCTGGTGTTTGGACTT+TGG | + | tig0036439:17474-17493 | Msa1455710:intron | 45.0% |
| ! | TTTTGTGTGCAGGTTTCTCG+AGG | + | tig0036439:17669-17688 | Msa1455710:intron | 45.0% |
| ! | GGCTTCAAATTAGTTGGCCT+TGG | + | tig0036439:18157-18176 | Msa1455710:intron | 45.0% |
| TCCACTAAGTTGCTCAACTG+GGG | - | tig0036439:18381-18400 | Msa1455710:intergenic | 45.0% | |
| CATCCACTAAGTTGCTCAAC+TGG | - | tig0036439:18383-18402 | Msa1455710:intergenic | 45.0% | |
| GGATGAAACTTCGATAGACG+TGG | + | tig0036439:18398-18417 | Msa1455710:CDS | 45.0% | |
| ACCTTGTCTAACCTGTTAGG+TGG | + | tig0036439:18531-18550 | Msa1455710:intron | 45.0% | |
| ACCACCTAACAGGTTAGACA+AGG | - | tig0036439:18535-18554 | Msa1455710:intergenic | 45.0% | |
| TTGCTGTGAAACCACCTAAC+AGG | - | tig0036439:18545-18564 | Msa1455710:intergenic | 45.0% | |
| GTTCTTCAGAACCATCAAGC+TGG | + | tig0036439:19024-19043 | Msa1455710:CDS | 45.0% | |
| GTTCTTCAGAACCATCAAGC+TGG | + | tig0036439:19024-19043 | Msa1455710:CDS | 45.0% | |
| ! | TCCCTCTTTTGTCTCTAGGT+TGG | - | tig0036439:19455-19474 | Msa1455710:intergenic | 45.0% |
| ACCTAGAGACAAAAGAGGGA+AGG | + | tig0036439:19455-19474 | Msa1455710:intron | 45.0% | |
| ! | ACCTTCCCTCTTTTGTCTCT+AGG | - | tig0036439:19459-19478 | Msa1455710:intergenic | 45.0% |
| ! | TAACCCAAAACCTTTTGGCG+AGG | + | tig0036439:19483-19502 | Msa1455710:intron | 45.0% |
| ! | TCACCTCGCCAAAAGGTTTT+GGG | - | tig0036439:19489-19508 | Msa1455710:intergenic | 45.0% |
| ! | ATCACCTCGCCAAAAGGTTT+TGG | - | tig0036439:19490-19509 | Msa1455710:intergenic | 45.0% |
| ! | AAAACCTTTTGGCGAGGTGA+TGG | + | tig0036439:19489-19508 | Msa1455710:intron | 45.0% |
| ! | AGGTGATGGTGTCCTTCTTT+GGG | + | tig0036439:19503-19522 | Msa1455710:intron | 45.0% |
| AAAAGTCACCGCTATTGCAG+TGG | - | tig0036439:19822-19841 | Msa1455710:intergenic | 45.0% | |
| !! | TGCTGAGTTGGTGATGAGAT+AGG | + | tig0036439:19978-19997 | Msa1455710:intron | 45.0% |
| !! | GCTGAGTTGGTGATGAGATA+GGG | + | tig0036439:19979-19998 | Msa1455710:intron | 45.0% |
| AGTGAAGAGAGAAGATGGAG+AGG | - | tig0036439:20064-20083 | Msa1455710:intergenic | 45.0% | |
| ACAACCTGATAAAGCGCAGT+GGG | - | tig0036439:20337-20356 | Msa1455710:intergenic | 45.0% | |
| ! | GGACTCTAAAAAGGCAAGTG+TGG | + | tig0036439:20399-20418 | Msa1455710:intron | 45.0% |
| GGAAACAACACCTGCTTATC+CGG | + | tig0036439:20526-20545 | Msa1455710:CDS | 45.0% | |
| !! | TGACTCCACTTTTGATGCTG+TGG | + | tig0036439:20574-20593 | Msa1455710:CDS | 45.0% |
| GGCAGCATTTCCTAGTGATA+AGG | + | tig0036439:21080-21099 | Msa1455710:CDS | 45.0% | |
| CAGTCCCCGACTAACTAATA+GGG | - | tig0036439:21553-21572 | Msa1455710:intergenic | 45.0% | |
| TTTCCTGTACAGCTAGTAGG+CGG | - | tig0036439:21622-21641 | Msa1455710:intergenic | 45.0% | |
| ! | CCTTTTCCTGTACAGCTAGT+AGG | - | tig0036439:21625-21644 | Msa1455710:intergenic | 45.0% |
| CCTACTAGCTGTACAGGAAA+AGG | + | tig0036439:21622-21641 | Msa1455710:intron | 45.0% | |
| CTTCCTTCGGTAGAGGATAA+AGG | + | tig0036439:21674-21693 | Msa1455710:intron | 45.0% | |
| ACCACTACACTCACTCATTC+CGG | + | tig0036439:21716-21735 | Msa1455710:intron | 45.0% | |
| GGAGAAGAGGTTCAATCCAT+AGG | + | tig0036439:21737-21756 | Msa1455710:intron | 45.0% | |
| ! | CAAGACTTGCTTACGATAGG+AGG | + | tig0036439:21884-21903 | Msa1455710:intron | 45.0% |
| AGTATACTTTCTGCGTAGGC+AGG | - | tig0036439:21976-21995 | Msa1455710:intergenic | 45.0% | |
| TAAAGCCGTTGAATTGCCCT+TGG | + | tig0036439:22006-22025 | Msa1455710:intron | 45.0% | |
| GACAACCAAGGGCAATTCAA+CGG | - | tig0036439:22014-22033 | Msa1455710:intergenic | 45.0% | |
| ACTCCCTGTGTTCTTTCAAC+TGG | - | tig0036439:22383-22402 | Msa1455710:intergenic | 45.0% | |
| AAAGAACACAGGGAGTAGAG+CGG | + | tig0036439:22387-22406 | Msa1455710:intron | 45.0% | |
| ! | ATGGTGGAGAAAGCCCATCA+AGG | + | tig0036439:16961-16980 | Msa1455710:CDS | 50.0% |
| GTTCGCGGTAAAGAGTCTAG+AGG | + | tig0036439:17208-17227 | Msa1455710:intron | 50.0% | |
| TCTGACACCGTGACACATGT+TGG | + | tig0036439:17381-17400 | Msa1455710:intron | 50.0% | |
| GCCCACCTGCGTACAAAATA+AGG | - | tig0036439:17729-17748 | Msa1455710:intergenic | 50.0% | |
| GGCCTTGGTATAGCATGAGT+TGG | + | tig0036439:18172-18191 | Msa1455710:intron | 50.0% | |
| CCACTAAGTTGCTCAACTGG+GGG | - | tig0036439:18380-18399 | Msa1455710:intergenic | 50.0% | |
| !! | CTTCGATAGACGTGGATTGG+AGG | + | tig0036439:18406-18425 | Msa1455710:CDS | 50.0% |
| GACAAGGTGAAGCACAATGG+TGG | - | tig0036439:18519-18538 | Msa1455710:intergenic | 50.0% | |
| TTCAGAACCATCAAGCTGGG+AGG | + | tig0036439:19028-19047 | Msa1455710:CDS | 50.0% | |
| TCAGAACCATCAAGCTGGGA+GGG | + | tig0036439:19029-19048 | Msa1455710:CDS | 50.0% | |
| ATGTATCCCTCCCAGCTTGA+TGG | - | tig0036439:19038-19057 | Msa1455710:intergenic | 50.0% | |
| TTCAGAACCATCAAGCTGGG+AGG | + | tig0036439:19028-19047 | Msa1455710:CDS | 50.0% | |
| TCAGAACCATCAAGCTGGGA+GGG | + | tig0036439:19029-19048 | Msa1455710:CDS | 50.0% | |
| ATGTATCCCTCCCAGCTTGA+TGG | - | tig0036439:19038-19057 | Msa1455710:intergenic | 50.0% | |
| ! | GAGGTGATGGTGTCCTTCTT+TGG | + | tig0036439:19502-19521 | Msa1455710:intron | 50.0% |
| !!! | TAGCGTATCGGCTTTTGCTG+TGG | - | tig0036439:19785-19804 | Msa1455710:intergenic | 50.0% |
| GCGGAATCGCAATAGCGTAT+CGG | - | tig0036439:19797-19816 | Msa1455710:intergenic | 50.0% | |
| TTCCGCTACCACTGCAATAG+CGG | + | tig0036439:19811-19830 | Msa1455710:intron | 50.0% | |
| TCAGAGATGACCTAGGTCGT+GGG | - | tig0036439:20024-20043 | Msa1455710:intergenic | 50.0% | |
| ATCAGAGATGACCTAGGTCG+TGG | - | tig0036439:20025-20044 | Msa1455710:intergenic | 50.0% | |
| CACAACCTGATAAAGCGCAG+TGG | - | tig0036439:20338-20357 | Msa1455710:intergenic | 50.0% | |
| TACTAGTGATGACTCCTCGC+CGG | + | tig0036439:21119-21138 | Msa1455710:CDS | 50.0% | |
| ACTAGTACAAACTTCCGGCG+AGG | - | tig0036439:21136-21155 | Msa1455710:intergenic | 50.0% | |
| CCAGTCCCCGACTAACTAAT+AGG | - | tig0036439:21554-21573 | Msa1455710:intergenic | 50.0% | |
| CCTATTAGTTAGTCGGGGAC+TGG | + | tig0036439:21551-21570 | Msa1455710:intron | 50.0% | |
| TATCCGCCTACTAGCTGTAC+AGG | + | tig0036439:21616-21635 | Msa1455710:intron | 50.0% | |
| !! | TGACTTGCTTCCTTCGGTAG+AGG | + | tig0036439:21667-21686 | Msa1455710:intron | 50.0% |
| AGCCCTTTATCCTCTACCGA+AGG | - | tig0036439:21680-21699 | Msa1455710:intergenic | 50.0% | |
| TCCGGAATGAGTGAGTGTAG+TGG | - | tig0036439:21720-21739 | Msa1455710:intergenic | 50.0% | |
| ACTCACTCATTCCGGAGAAG+AGG | + | tig0036439:21724-21743 | Msa1455710:intron | 50.0% | |
| AGAGGTTCAATCCATAGGCG+AGG | + | tig0036439:21742-21761 | Msa1455710:intron | 50.0% | |
| GAGGTGGAGACTTCGGTATA+GGG | + | tig0036439:21761-21780 | Msa1455710:intron | 50.0% | |
| TACGATAGGAGGGACTCGAA+AGG | + | tig0036439:21895-21914 | Msa1455710:intron | 50.0% | |
| TCGAATAGCGCTCCAATCGA+AGG | + | tig0036439:22155-22174 | Msa1455710:intron | 50.0% | |
| CGAATAGCGCTCCAATCGAA+GGG | + | tig0036439:22156-22175 | Msa1455710:intron | 50.0% | |
| !! | TCTACAGAGGTACTGGCTAG+AGG | + | tig0036439:22242-22261 | Msa1455710:intron | 50.0% |
| GGCTTCAGCTTCTGTTCTGA+AGG | + | tig0036439:22349-22368 | Msa1455710:intron | 50.0% | |
| ! | CGGTGTCAAGGTGTGAGTGT+CGG | - | tig0036439:17303-17322 | Msa1455710:intergenic | 55.0% |
| CGACACTCACACCTTGACAC+CGG | + | tig0036439:17301-17320 | Msa1455710:intron | 55.0% | |
| ! | CATGTGTCACGGTGTCAGAC+AGG | - | tig0036439:17380-17399 | Msa1455710:intergenic | 55.0% |
| CTTTGGACACCGACACGTGT+CGG | + | tig0036439:17491-17510 | Msa1455710:intron | 55.0% | |
| TTTGGACACCGACACGTGTC+GGG | + | tig0036439:17492-17511 | Msa1455710:intron | 55.0% | |
| GTGCAGGTTTCTCGAGGTTC+TGG | + | tig0036439:17675-17694 | Msa1455710:intron | 55.0% | |
| CCCCCAGTTGAGCAACTTAG+TGG | + | tig0036439:18377-18396 | Msa1455710:intron | 55.0% | |
| GACACCATCACCTCGCCAAA+AGG | - | tig0036439:19496-19515 | Msa1455710:intergenic | 55.0% | |
| CACCGCTATTGCAGTGGTAG+CGG | - | tig0036439:19816-19835 | Msa1455710:intergenic | 55.0% | |
| TGACCTAGGTCGTGGGGTTT+GGG | - | tig0036439:20017-20036 | Msa1455710:intergenic | 55.0% | |
| ATGACCTAGGTCGTGGGGTT+TGG | - | tig0036439:20018-20037 | Msa1455710:intergenic | 55.0% | |
| CAGAGATGACCTAGGTCGTG+GGG | - | tig0036439:20023-20042 | Msa1455710:intergenic | 55.0% | |
| AGAAGATGGAGAGGCAGAGG+CGG | - | tig0036439:20055-20074 | Msa1455710:intergenic | 55.0% | |
| GAGAGAAGATGGAGAGGCAG+AGG | - | tig0036439:20058-20077 | Msa1455710:intergenic | 55.0% | |
| ATGGCCCACTGCGCTTTATC+AGG | + | tig0036439:20330-20349 | Msa1455710:intron | 55.0% | |
| GGTTCAATCCATAGGCGAGG+TGG | + | tig0036439:21745-21764 | Msa1455710:intron | 55.0% | |
| CATAGGCGAGGTGGAGACTT+CGG | + | tig0036439:21754-21773 | Msa1455710:intron | 55.0% | |
| CGAGGTGGAGACTTCGGTAT+AGG | + | tig0036439:21760-21779 | Msa1455710:intron | 55.0% | |
| GAAGGTCGACCGATAACGAG+AGG | - | tig0036439:21865-21884 | Msa1455710:intergenic | 55.0% | |
| ATAGCGCTCCAATCGAAGGG+CGG | + | tig0036439:22159-22178 | Msa1455710:intron | 55.0% | |
| CATTTCTCCCGCCCTTCGAT+TGG | - | tig0036439:22170-22189 | Msa1455710:intergenic | 55.0% | |
| !! | CAGAGGTACTGGCTAGAGGA+CGG | + | tig0036439:22246-22265 | Msa1455710:intron | 55.0% |
| !! | AGAGGTACTGGCTAGAGGAC+GGG | + | tig0036439:22247-22266 | Msa1455710:intron | 55.0% |
| !! | GACGGGTTACTCTACGCCAA+GGG | + | tig0036439:22264-22283 | Msa1455710:intron | 55.0% |
| AACGAATAGGAACCCGCCCT+TGG | - | tig0036439:22283-22302 | Msa1455710:intergenic | 55.0% | |
| GCCTAAGAAGGTCTCCCCTA+GGG | - | tig0036439:22413-22432 | Msa1455710:intergenic | 55.0% | |
| AGCCTAAGAAGGTCTCCCCT+AGG | - | tig0036439:22414-22433 | Msa1455710:intergenic | 55.0% | |
| ACCTAGGTCGTGGGGTTTGG+GGG | - | tig0036439:20015-20034 | Msa1455710:intergenic | 60.0% | |
| GACCTAGGTCGTGGGGTTTG+GGG | - | tig0036439:20016-20035 | Msa1455710:intergenic | 60.0% | |
| CGAAGTCTCCACCTCGCCTA+TGG | - | tig0036439:21756-21775 | Msa1455710:intergenic | 60.0% | |
| TAGCGCTCCAATCGAAGGGC+GGG | + | tig0036439:22160-22179 | Msa1455710:intron | 60.0% | |
| !! | GGACGGGTTACTCTACGCCA+AGG | + | tig0036439:22263-22282 | Msa1455710:intron | 60.0% |
| GGGTTACTCTACGCCAAGGG+CGG | + | tig0036439:22267-22286 | Msa1455710:intron | 60.0% | |
| GGTTACTCTACGCCAAGGGC+GGG | + | tig0036439:22268-22287 | Msa1455710:intron | 60.0% | |
| GCCCTAGGGGAGACCTTCTT+AGG | + | tig0036439:22409-22428 | Msa1455710:intron | 60.0% | |
| GTCTGGTGCCCGACACGTGT+CGG | - | tig0036439:17503-17522 | Msa1455710:intergenic | 65.0% | |
| TGTACGCAGGTGGGCACCTG+AGG | + | tig0036439:17734-17753 | Msa1455710:CDS | 65.0% | |
| ACCCCCAAACCCCACGACCT+AGG | + | tig0036439:20011-20030 | Msa1455710:intron | 65.0% | |
| ACAGGGAGTAGAGCGGCCCT+AGG | + | tig0036439:22394-22413 | Msa1455710:intron | 65.0% | |
| CAGGGAGTAGAGCGGCCCTA+GGG | + | tig0036439:22395-22414 | Msa1455710:intron | 65.0% | |
| AGGGAGTAGAGCGGCCCTAG+GGG | + | tig0036439:22396-22415 | Msa1455710:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0036439 | gene | 16795 | 22736 | 16795 | ID=Msa1455710;Name=Msa1455710 |
| tig0036439 | mRNA | 16795 | 22736 | 16795 | ID=Msa1455710-mRNA-1;Parent=Msa1455710;Name=Msa1455710-mRNA-1;_AED=0.18;_eAED=0.18;_QI=156|0.66|0.7|1|0.66|0.6|10|628|246 |
| tig0036439 | exon | 16795 | 16982 | 16795 | ID=Msa1455710-mRNA-1:exon:20365;Parent=Msa1455710-mRNA-1 |
| tig0036439 | exon | 17081 | 17159 | 17081 | ID=Msa1455710-mRNA-1:exon:20366;Parent=Msa1455710-mRNA-1 |
| tig0036439 | exon | 17681 | 17755 | 17681 | ID=Msa1455710-mRNA-1:exon:20367;Parent=Msa1455710-mRNA-1 |
| tig0036439 | exon | 18384 | 18490 | 18384 | ID=Msa1455710-mRNA-1:exon:20368;Parent=Msa1455710-mRNA-1 |
| tig0036439 | exon | 19017 | 19077 | 19017 | ID=Msa1455710-mRNA-1:exon:20369;Parent=Msa1455710-mRNA-1 |
| tig0036439 | exon | 19201 | 19287 | 19201 | ID=Msa1455710-mRNA-1:exon:20370;Parent=Msa1455710-mRNA-1 |
| tig0036439 | exon | 20352 | 20417 | 20352 | ID=Msa1455710-mRNA-1:exon:20371;Parent=Msa1455710-mRNA-1 |
| tig0036439 | exon | 20521 | 20595 | 20521 | ID=Msa1455710-mRNA-1:exon:20372;Parent=Msa1455710-mRNA-1 |
| tig0036439 | exon | 21027 | 21525 | 21027 | ID=Msa1455710-mRNA-1:exon:20373;Parent=Msa1455710-mRNA-1 |
| tig0036439 | exon | 22449 | 22736 | 22449 | ID=Msa1455710-mRNA-1:exon:20374;Parent=Msa1455710-mRNA-1 |
| tig0036439 | five_prime_UTR | 16795 | 16950 | 16795 | ID=Msa1455710-mRNA-1:five_prime_utr;Parent=Msa1455710-mRNA-1 |
| tig0036439 | CDS | 16951 | 16982 | 16951 | ID=Msa1455710-mRNA-1:cds;Parent=Msa1455710-mRNA-1 |
| tig0036439 | CDS | 17081 | 17159 | 17081 | ID=Msa1455710-mRNA-1:cds;Parent=Msa1455710-mRNA-1 |
| tig0036439 | CDS | 17681 | 17755 | 17681 | ID=Msa1455710-mRNA-1:cds;Parent=Msa1455710-mRNA-1 |
| tig0036439 | CDS | 18384 | 18490 | 18384 | ID=Msa1455710-mRNA-1:cds;Parent=Msa1455710-mRNA-1 |
| tig0036439 | CDS | 19017 | 19077 | 19017 | ID=Msa1455710-mRNA-1:cds;Parent=Msa1455710-mRNA-1 |
| tig0036439 | CDS | 19201 | 19287 | 19201 | ID=Msa1455710-mRNA-1:cds;Parent=Msa1455710-mRNA-1 |
| tig0036439 | CDS | 20352 | 20417 | 20352 | ID=Msa1455710-mRNA-1:cds;Parent=Msa1455710-mRNA-1 |
| tig0036439 | CDS | 20521 | 20595 | 20521 | ID=Msa1455710-mRNA-1:cds;Parent=Msa1455710-mRNA-1 |
| tig0036439 | CDS | 21027 | 21185 | 21027 | ID=Msa1455710-mRNA-1:cds;Parent=Msa1455710-mRNA-1 |
| tig0036439 | three_prime_UTR | 21186 | 21525 | 21186 | ID=Msa1455710-mRNA-1:three_prime_utr;Parent=Msa1455710-mRNA-1 |
| tig0036439 | three_prime_UTR | 22449 | 22736 | 22449 | ID=Msa1455710-mRNA-1:three_prime_utr;Parent=Msa1455710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
