AlfalfaGEDB | Msa0526930

M. sativa cultivar zhongmu-4 / Msa0526930

KEGG: K19882
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944
PFAM: PF03283.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0526930	XP_003626088.2	88.000	475	38	4	1	470	1	461	0.0	842

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0526930	sp\|Q9SFF6\|PAE12_ARATH	72.472	356	97	1	63	418	50	404	0.0	570

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0526930	A0A396H778	88.000	475	38	4	1	470	1	461	0.0	842

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0067590	Msa0526930	0.800778	1.228654e-48	-8.615850e-47
Msa0195810	Msa0526930	0.801670	8.071708e-49	-8.615850e-47
Msa0310730	Msa0526930	0.810638	1.043433e-50	-8.615850e-47
Msa0327990	Msa0526930	0.824596	7.407812e-54	-8.615850e-47
Msa0367540	Msa0526930	0.821302	4.340231e-53	-8.615850e-47
Msa0415160	Msa0526930	0.822997	1.755471e-53	-8.615850e-47
Msa0460170	Msa0526930	0.801842	7.439618e-49	-8.615850e-47
Msa0484560	Msa0526930	0.812220	4.731142e-51	-8.615850e-47
Msa0526930	Msa0576020	0.837895	3.967152e-57	-8.615850e-47
Msa0526930	Msa0576080	0.812797	3.538574e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0526930	MtrunA17_Chr7g0270931	88.000	475	38	4	1	470	1	461	0.0	842
Msa0526930	MtrunA17_Chr1g0193761	79.121	364	76	0	55	418	29	392	0.0	629
Msa0526930	MtrunA17_Chr1g0193381	72.329	365	101	0	54	418	41	405	0.0	584
Msa0526930	MtrunA17_Chr7g0271231	70.787	356	104	0	63	418	53	408	0.0	564
Msa0526930	MtrunA17_Chr4g0069571	69.061	362	112	0	62	423	54	415	0.0	541
Msa0526930	MtrunA17_Chr5g0408881	53.803	355	162	1	66	418	29	383	5.22e-150	434
Msa0526930	MtrunA17_Chr8g0369681	50.276	362	178	1	59	418	20	381	2.50e-144	419
Msa0526930	MtrunA17_Chr1g0203101	51.813	386	177	4	61	441	34	415	4.33e-140	408
Msa0526930	MtrunA17_Chr1g0203121	50.777	386	179	4	61	441	34	413	4.75e-138	403
Msa0526930	MtrunA17_Chr8g0369651	48.468	359	183	1	62	418	24	382	5.50e-137	399

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0526930	AT3G05910.1	72.472	356	97	1	63	418	50	404	0.0	570
Msa0526930	AT3G62060.2	71.311	366	104	1	59	423	48	413	0.0	569
Msa0526930	AT3G62060.1	71.311	366	104	1	59	423	48	413	0.0	568
Msa0526930	AT2G46930.1	70.442	362	107	0	62	423	49	410	0.0	567
Msa0526930	AT1G57590.1	69.916	359	108	0	65	423	79	437	0.0	561
Msa0526930	AT5G26670.1	67.539	382	122	1	39	418	24	405	0.0	558
Msa0526930	AT4G19420.1	55.153	359	159	1	62	418	21	379	1.54e-153	442
Msa0526930	AT4G19420.2	55.153	359	159	1	62	418	21	379	1.54e-153	442
Msa0526930	AT5G26670.3	68.990	287	89	0	132	418	1	287	5.67e-153	437
Msa0526930	AT5G26670.2	68.990	287	89	0	132	418	1	287	5.67e-153	437

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Find 135 sgRNAs with CRISPR-Local

Find 801 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGGCACCACCCTTC+AGG	0.377739	3_4:-81061088	None:intergenic
AAAAGTCAACCTTGTGGAGC+GGG	0.473868	3_4:-81062295	None:intergenic
AAAGATCCAGTACCACACAT+TGG	0.653893	3_4:+81052251	Msa0526930:five_prime_UTR
AAATAGTTGGCTCATTCAAT+TGG	0.461267	3_4:+81052906	Msa0526930:CDS
AAATTACCGAAGTTGGGTCC+AGG	0.563109	3_4:-81054487	None:intergenic
AATAAAGCTGAAGAAAATCC+TGG	0.530795	3_4:+81053172	Msa0526930:CDS
AATAGATGCTTGATATAATG+AGG	0.553366	3_4:+81062581	Msa0526930:three_prime_UTR
AATCAGAAAATTACCGAAGT+TGG	0.357974	3_4:-81054494	None:intergenic
AATCGGAGAGACAAGATACA+TGG	0.638574	3_4:+81055137	Msa0526930:CDS
AATGCGGGGCTAGACTTTCT+TGG	0.319923	3_4:-81054842	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGACACGAGAAAATAAAGAT+CGG	+	chr3_4:81052220-81052239	Msa0526930:five_prime_UTR	30.0%
TTTCATGTCTTCACTATTCA+TGG	+	chr3_4:81052751-81052770	Msa0526930:intron	30.0%
AATAAAGCTGAAGAAAATCC+TGG	+	chr3_4:81053172-81053191	Msa0526930:CDS	30.0%
GTATGAATTCACAAGTCAAT+TGG	-	chr3_4:81053854-81053873	None:intergenic	30.0%
TATTCAATCATAGATGTCCA+TGG	+	chr3_4:81053999-81054018	Msa0526930:intron	30.0%
ATCACTCAAACATTTCACTT+TGG	-	chr3_4:81054129-81054148	None:intergenic	30.0%
TCATGTAGAACTGATATATC+TGG	+	chr3_4:81054250-81054269	Msa0526930:intron	30.0%
CATGTAGAACTGATATATCT+GGG	+	chr3_4:81054251-81054270	Msa0526930:intron	30.0%
ATGTAGAACTGATATATCTG+GGG	+	chr3_4:81054252-81054271	Msa0526930:intron	30.0%
ATCAGAAAATTACCGAAGTT+GGG	-	chr3_4:81054496-81054515	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	81052174	81062902	81052174	ID=Msa0526930;Name=Msa0526930
chr3_4	mRNA	81052174	81062902	81052174	ID=Msa0526930-mRNA-1;Parent=Msa0526930;Name=Msa0526930-mRNA-1;_AED=0.19;_eAED=0.21;_QI=167\|0.85\|0.93\|1\|0.78\|0.73\|15\|497\|470
chr3_4	exon	81052174	81052578	81052174	ID=Msa0526930-mRNA-1:exon:24395;Parent=Msa0526930-mRNA-1
chr3_4	exon	81052848	81052930	81052848	ID=Msa0526930-mRNA-1:exon:24396;Parent=Msa0526930-mRNA-1
chr3_4	exon	81053064	81053193	81053064	ID=Msa0526930-mRNA-1:exon:24397;Parent=Msa0526930-mRNA-1
chr3_4	exon	81053285	81053358	81053285	ID=Msa0526930-mRNA-1:exon:24398;Parent=Msa0526930-mRNA-1
chr3_4	exon	81053883	81053969	81053883	ID=Msa0526930-mRNA-1:exon:24399;Parent=Msa0526930-mRNA-1
chr3_4	exon	81054044	81054168	81054044	ID=Msa0526930-mRNA-1:exon:24400;Parent=Msa0526930-mRNA-1
chr3_4	exon	81054258	81054318	81054258	ID=Msa0526930-mRNA-1:exon:24401;Parent=Msa0526930-mRNA-1
chr3_4	exon	81054449	81054502	81054449	ID=Msa0526930-mRNA-1:exon:24402;Parent=Msa0526930-mRNA-1
chr3_4	exon	81054591	81054668	81054591	ID=Msa0526930-mRNA-1:exon:24403;Parent=Msa0526930-mRNA-1
chr3_4	exon	81054840	81054945	81054840	ID=Msa0526930-mRNA-1:exon:24404;Parent=Msa0526930-mRNA-1
chr3_4	exon	81055047	81055192	81055047	ID=Msa0526930-mRNA-1:exon:24405;Parent=Msa0526930-mRNA-1
chr3_4	exon	81055470	81055541	81055470	ID=Msa0526930-mRNA-1:exon:24406;Parent=Msa0526930-mRNA-1
chr3_4	exon	81061074	81061129	81061074	ID=Msa0526930-mRNA-1:exon:24407;Parent=Msa0526930-mRNA-1
chr3_4	exon	81062266	81062697	81062266	ID=Msa0526930-mRNA-1:exon:24408;Parent=Msa0526930-mRNA-1
chr3_4	exon	81062735	81062902	81062735	ID=Msa0526930-mRNA-1:exon:24409;Parent=Msa0526930-mRNA-1
chr3_4	five_prime_UTR	81052174	81052340	81052174	ID=Msa0526930-mRNA-1:five_prime_utr;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81052341	81052578	81052341	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81052848	81052930	81052848	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81053064	81053193	81053064	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81053285	81053358	81053285	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81053883	81053969	81053883	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81054044	81054168	81054044	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81054258	81054318	81054258	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81054449	81054502	81054449	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81054591	81054668	81054591	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81054840	81054945	81054840	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81055047	81055192	81055047	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81055470	81055541	81055470	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81061074	81061129	81061074	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	CDS	81062266	81062368	81062266	ID=Msa0526930-mRNA-1:cds;Parent=Msa0526930-mRNA-1
chr3_4	three_prime_UTR	81062369	81062697	81062369	ID=Msa0526930-mRNA-1:three_prime_utr;Parent=Msa0526930-mRNA-1
chr3_4	three_prime_UTR	81062735	81062902	81062735	ID=Msa0526930-mRNA-1:three_prime_utr;Parent=Msa0526930-mRNA-1

Gene Sequence

>Msa0526930

ATGACAAGAATGGATATTATTCTGATAATAACAATAGTAACGTTTTTCTTTGTTATCTCCTCAGTTAGATCTCACGAGATCACTCAGACACAGAATCTCTCACCTCGGGATATCTTGGAAAACGATGTCGTTTCAGTTCCATTGGCAGATGATATACGTTCATCATCCTCTCCCCTGCTGCCTCAACCTCTCATGATCCCACTCACTCTCATTCATGGAGCTGATTCAAAAGGAGCAGTATGTTTGGATGGAACTTTACCTGGTTACCACTTCCATCCCGGATCTGGATCTGGTGCAAATAGTTGGCTCATTCAATTGGAGGGAGGAGGATGGTGTAATACCATCAGAAGTTGTGTCTTTAGAAAAACTACTCGACGCGGTTCCTCAAAATACATGGAAAAACAACTACCATTCACTGGATTATTGAGCAATAAAGCTGAAGAAAATCCTGATTTTTTTAACTGGAACAGAGTCAAAGTGAGGTACTGTGATGGGGCGTCTTTCAGTGGAGACAGTCAAAACGAGGCTGCACAGCTTCAATTTAGAGGACAGAAAATATGGCTAGCTGCAATTGAAGAATTAATGTCGAAGGGAATGAAGAACGCCAACAAGGCTCTTTTATCTGGATGCTCTGCGGGTGGTCTGGCATCTATACTACATTGCGATGAGTTCCAAAGCTTGTTTCCAAAATCTACCAAAGTGAAATGTTTGAGTGATGCTGGATTTTTTCTTGATGCAACTGATATATCTGGGGGGCACACATTGAGGAATCTCTTTGGAGGTGTAGTTAGCTTACAGGAAGTGCAAAAAAATCTACCAAAAAGTTGTCTTAACCACCTGGACCCAACTTCGTGCTTCTTTCCTCAAAATTTGATCGATCATGTTCAGACTCCACTGTTTCTGCTGAATGCAGCTTATGATGCATGGCAGTTCCAAGAAAGTCTAGCCCCGCATTCAGCAGATCCTCATGGATCTTGGAATAATTGTAAATCAAATCATGCAAATTGTAATTCATCCCAAATTCAGATCCTCCAAAACTTCAGAAATCAAATGCTAAATGACATCAAAGGATTTTCAACGACTTCTCAATCCGGATTATTCATAAATTCTTGTTTTGCTCATTGCCAATCGGAGAGACAAGATACATGGTTTGCTGATGACTCTCCCCTCCTTAACAACATGCCAATTGCGATTGCCGTTGGAAATTGGTTTTTTGATCGTCAAGTTGTCAAAGCTATTGATTGTGCTTACCCTGACCCCATTCTATGCCTGAAGGGTGGTGCCTTCTTTTTAATTGCACCACTTTTCAATGATGATATTCCTACCTCCATGCTATATTCCCGCTCCACAAGGTTGACTTTTAGTGCTGGCTTATTTGTACTAAGTGCTTTATTGCCAATTACATGCTCATAA

Protein sequence

>Msa0526930

MTRMDIILIITIVTFFFVISSVRSHEITQTQNLSPRDILENDVVSVPLADDIRSSSSPLLPQPLMIPLTLIHGADSKGAVCLDGTLPGYHFHPGSGSGANSWLIQLEGGGWCNTIRSCVFRKTTRRGSSKYMEKQLPFTGLLSNKAEENPDFFNWNRVKVRYCDGASFSGDSQNEAAQLQFRGQKIWLAAIEELMSKGMKNANKALLSGCSAGGLASILHCDEFQSLFPKSTKVKCLSDAGFFLDATDISGGHTLRNLFGGVVSLQEVQKNLPKSCLNHLDPTSCFFPQNLIDHVQTPLFLLNAAYDAWQFQESLAPHSADPHGSWNNCKSNHANCNSSQIQILQNFRNQMLNDIKGFSTTSQSGLFINSCFAHCQSERQDTWFADDSPLLNNMPIAIAVGNWFFDRQVVKAIDCAYPDPILCLKGGAFFLIAPLFNDDIPTSMLYSRSTRLTFSAGLFVLSALLPITCS*