Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127780 | XP_003626088.2 | 90.546 | 476 | 15 | 5 | 1 | 461 | 1 | 461 | 0.0 | 870 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127780 | sp|Q9SFF6|PAE12_ARATH | 72.678 | 366 | 99 | 1 | 62 | 427 | 50 | 414 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127780 | A0A396H778 | 90.546 | 476 | 15 | 5 | 1 | 461 | 1 | 461 | 0.0 | 870 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027020 | Msa1127780 | 0.804506 | 2.090954e-49 | -8.615850e-47 |
| Msa0089700 | Msa1127780 | 0.803125 | 4.046091e-49 | -8.615850e-47 |
| Msa0093360 | Msa1127780 | 0.807935 | 3.963166e-50 | -8.615850e-47 |
| Msa0638030 | Msa1127780 | 0.826141 | 3.192776e-54 | -8.615850e-47 |
| Msa0651000 | Msa1127780 | 0.803960 | 2.715697e-49 | -8.615850e-47 |
| Msa0745270 | Msa1127780 | 0.801423 | 9.069244e-49 | -8.615850e-47 |
| Msa0167160 | Msa1127780 | 0.802376 | 5.777288e-49 | -8.615850e-47 |
| Msa0175240 | Msa1127780 | 0.812197 | 4.784768e-51 | -8.615850e-47 |
| Msa0195810 | Msa1127780 | 0.814429 | 1.547621e-51 | -8.615850e-47 |
| Msa0232160 | Msa1127780 | 0.801711 | 7.914765e-49 | -8.615850e-47 |
| Msa0385850 | Msa1127780 | 0.803474 | 3.426048e-49 | -8.615850e-47 |
| Msa0457600 | Msa1127780 | 0.814643 | 1.387497e-51 | -8.615850e-47 |
| Msa0460170 | Msa1127780 | 0.808996 | 2.353655e-50 | -8.615850e-47 |
| Msa1083250 | Msa1127780 | 0.892747 | 1.193191e-74 | -8.615850e-47 |
| Msa0266330 | Msa1127780 | 0.803872 | 2.832713e-49 | -8.615850e-47 |
| Msa0310270 | Msa1127780 | 0.808556 | 2.922220e-50 | -8.615850e-47 |
| Msa0315720 | Msa1127780 | 0.811463 | 6.913674e-51 | -8.615850e-47 |
| Msa0327990 | Msa1127780 | 0.814490 | 1.500505e-51 | -8.615850e-47 |
| Msa0341950 | Msa1127780 | 0.803477 | 3.421932e-49 | -8.615850e-47 |
| Msa0358750 | Msa1127780 | 0.800580 | 1.348236e-48 | -8.615850e-47 |
| Msa1127780 | Msa1143810 | 0.815432 | 9.274801e-52 | -8.615850e-47 |
| Msa1127780 | Msa1175340 | 0.805828 | 1.105427e-49 | -8.615850e-47 |
| Msa1127780 | Msa1190510 | 0.802924 | 4.453465e-49 | -8.615850e-47 |
| Msa1127780 | Msa1228260 | 0.801384 | 9.237799e-49 | -8.615850e-47 |
| Msa1127780 | Msa1236120 | 0.802446 | 5.588788e-49 | -8.615850e-47 |
| Msa1127780 | Msa1271220 | 0.801079 | 1.066446e-48 | -8.615850e-47 |
| Msa1127780 | Msa1372460 | 0.810536 | 1.097765e-50 | -8.615850e-47 |
| Msa1127780 | Msa1375970 | 0.803489 | 3.401423e-49 | -8.615850e-47 |
| Msa1127780 | Msa1427260 | 0.811161 | 8.040984e-51 | -8.615850e-47 |
| Msa1127780 | Msa1429380 | 0.800578 | 1.349831e-48 | -8.615850e-47 |
| Msa1127780 | Msa1434860 | 0.805066 | 1.596935e-49 | -8.615850e-47 |
| Msa0526930 | Msa1127780 | 0.943736 | 7.016476e-103 | -8.615850e-47 |
| Msa0532870 | Msa1127780 | 0.806943 | 6.435101e-50 | -8.615850e-47 |
| Msa0576020 | Msa1127780 | 0.809933 | 1.481154e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127780 | MtrunA17_Chr7g0270931 | 90.546 | 476 | 15 | 5 | 1 | 461 | 1 | 461 | 0.0 | 870 |
| Msa1127780 | MtrunA17_Chr1g0193761 | 79.412 | 374 | 77 | 0 | 54 | 427 | 29 | 402 | 0.0 | 650 |
| Msa1127780 | MtrunA17_Chr1g0193381 | 71.354 | 384 | 110 | 0 | 44 | 427 | 32 | 415 | 0.0 | 606 |
| Msa1127780 | MtrunA17_Chr7g0271231 | 71.117 | 367 | 106 | 0 | 62 | 428 | 53 | 419 | 0.0 | 584 |
| Msa1127780 | MtrunA17_Chr4g0069571 | 70.380 | 368 | 109 | 0 | 61 | 428 | 54 | 421 | 0.0 | 564 |
| Msa1127780 | MtrunA17_Chr5g0408881 | 53.591 | 362 | 166 | 1 | 65 | 424 | 29 | 390 | 2.00e-153 | 443 |
| Msa1127780 | MtrunA17_Chr8g0369681 | 50.269 | 372 | 183 | 1 | 58 | 427 | 20 | 391 | 6.29e-149 | 430 |
| Msa1127780 | MtrunA17_Chr1g0203101 | 54.032 | 372 | 166 | 3 | 60 | 426 | 34 | 405 | 2.71e-145 | 421 |
| Msa1127780 | MtrunA17_Chr1g0203121 | 53.226 | 372 | 169 | 3 | 60 | 426 | 34 | 405 | 1.23e-143 | 417 |
| Msa1127780 | MtrunA17_Chr8g0369651 | 49.051 | 369 | 186 | 1 | 61 | 427 | 24 | 392 | 1.94e-143 | 416 |
| Msa1127780 | MtrunA17_Chr7g0238491 | 51.075 | 372 | 172 | 4 | 64 | 427 | 56 | 425 | 3.26e-138 | 404 |
| Msa1127780 | MtrunA17_Chr5g0418101 | 48.641 | 368 | 183 | 2 | 64 | 429 | 41 | 404 | 1.96e-135 | 395 |
| Msa1127780 | MtrunA17_Chr1g0163701 | 55.340 | 103 | 46 | 0 | 245 | 347 | 270 | 372 | 2.20e-31 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127780 | AT3G62060.2 | 68.657 | 402 | 124 | 2 | 58 | 458 | 48 | 448 | 0.0 | 592 |
| Msa1127780 | AT3G05910.1 | 72.678 | 366 | 99 | 1 | 62 | 427 | 50 | 414 | 0.0 | 589 |
| Msa1127780 | AT2G46930.1 | 71.196 | 368 | 106 | 0 | 61 | 428 | 49 | 416 | 0.0 | 587 |
| Msa1127780 | AT3G62060.1 | 72.237 | 371 | 102 | 1 | 58 | 427 | 48 | 418 | 0.0 | 587 |
| Msa1127780 | AT1G57590.1 | 71.154 | 364 | 105 | 0 | 64 | 427 | 79 | 442 | 0.0 | 582 |
| Msa1127780 | AT5G26670.1 | 71.311 | 366 | 105 | 0 | 62 | 427 | 50 | 415 | 0.0 | 577 |
| Msa1127780 | AT5G26670.3 | 69.360 | 297 | 91 | 0 | 131 | 427 | 1 | 297 | 7.08e-161 | 456 |
| Msa1127780 | AT5G26670.2 | 69.360 | 297 | 91 | 0 | 131 | 427 | 1 | 297 | 7.08e-161 | 456 |
| Msa1127780 | AT5G26670.4 | 69.360 | 297 | 91 | 0 | 131 | 427 | 1 | 297 | 7.08e-161 | 456 |
| Msa1127780 | AT4G19420.1 | 55.285 | 369 | 163 | 1 | 61 | 427 | 21 | 389 | 3.04e-159 | 456 |
| Msa1127780 | AT4G19420.2 | 55.285 | 369 | 163 | 1 | 61 | 427 | 21 | 389 | 3.04e-159 | 456 |
| Msa1127780 | AT1G09550.1 | 58.721 | 344 | 141 | 1 | 63 | 406 | 40 | 382 | 3.56e-153 | 441 |
| Msa1127780 | AT4G19420.4 | 50.495 | 404 | 163 | 2 | 61 | 427 | 21 | 424 | 4.26e-152 | 439 |
| Msa1127780 | AT5G23870.1 | 53.533 | 368 | 165 | 4 | 65 | 426 | 35 | 402 | 1.07e-146 | 425 |
| Msa1127780 | AT5G23870.4 | 53.533 | 368 | 165 | 4 | 65 | 426 | 35 | 402 | 1.07e-146 | 425 |
| Msa1127780 | AT3G05910.2 | 75.194 | 258 | 63 | 1 | 62 | 319 | 50 | 306 | 1.52e-146 | 421 |
| Msa1127780 | AT5G23870.2 | 53.533 | 368 | 165 | 4 | 65 | 426 | 35 | 402 | 1.83e-146 | 425 |
| Msa1127780 | AT5G23870.3 | 51.795 | 390 | 178 | 5 | 43 | 426 | 17 | 402 | 2.81e-146 | 425 |
| Msa1127780 | AT3G09410.1 | 49.096 | 387 | 191 | 2 | 45 | 428 | 44 | 427 | 9.44e-143 | 416 |
| Msa1127780 | AT5G45280.2 | 47.826 | 368 | 189 | 2 | 65 | 429 | 24 | 391 | 2.49e-136 | 398 |
| Msa1127780 | AT4G19410.1 | 47.554 | 368 | 190 | 2 | 65 | 429 | 24 | 391 | 6.07e-136 | 397 |
| Msa1127780 | AT4G19410.2 | 48.547 | 344 | 175 | 1 | 65 | 406 | 24 | 367 | 4.32e-130 | 386 |
| Msa1127780 | AT3G09405.1 | 47.170 | 371 | 191 | 2 | 55 | 422 | 41 | 409 | 5.63e-130 | 382 |
| Msa1127780 | AT3G09410.3 | 49.003 | 351 | 173 | 2 | 45 | 392 | 44 | 391 | 1.32e-126 | 373 |
| Msa1127780 | AT5G45280.1 | 50.877 | 285 | 138 | 1 | 65 | 347 | 24 | 308 | 1.53e-111 | 334 |
| Msa1127780 | AT3G09405.2 | 45.215 | 303 | 161 | 2 | 123 | 422 | 2 | 302 | 9.90e-101 | 303 |
| Msa1127780 | AT4G19420.3 | 58.744 | 223 | 90 | 1 | 61 | 281 | 21 | 243 | 3.23e-93 | 284 |
Find 137 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTCACTTTGGTAGATTT+TGG | 0.102250 | 7_3:+79458888 | None:intergenic |
| TACTTTGGAGGATCTGAATT+TGG | 0.129041 | 7_3:+79458078 | None:intergenic |
| TTGCGATTGCCGTTGGAAAT+TGG | 0.247498 | 7_3:-79457530 | Msa1127780:CDS |
| TGGAGGTGTAGTTAGCTTAC+AGG | 0.258857 | 7_3:-79458707 | Msa1127780:intron |
| TCATGTAGAACTGATATATC+TGG | 0.286074 | 7_3:-79458754 | Msa1127780:intron |
| AATGCGGGGCTAGACTTTCT+TGG | 0.319923 | 7_3:+79458162 | None:intergenic |
| AATTTAGAGGACAGAAAATA+TGG | 0.324688 | 7_3:-79459109 | Msa1127780:CDS |
| TTCTTCTCATTTCTCAGAAC+AGG | 0.338401 | 7_3:+79460760 | None:intergenic |
| CTCACTTGAAGACCAGATTA+TGG | 0.340475 | 7_3:+79457448 | None:intergenic |
| CCAATTTGTTCTCCATCTAA+TGG | 0.344065 | 7_3:+79455646 | None:intergenic |
| CCATTAGATGGAGAACAAAT+TGG | 0.348817 | 7_3:-79455646 | Msa1127780:three_prime_UTR |
| GTGTATTATGAGCATGTAAT+TGG | 0.351968 | 7_3:+79455899 | None:intergenic |
| GCTGCACAGCTTCAATTTAG+AGG | 0.354360 | 7_3:-79459122 | Msa1127780:CDS |
| AATCAGAAAATTACCGAAGT+TGG | 0.357974 | 7_3:+79458510 | None:intergenic |
| ACTTTGGAGGATCTGAATTT+GGG | 0.360290 | 7_3:+79458079 | None:intergenic |
| ATCCCACTCACTCTCATTCA+TGG | 0.363631 | 7_3:-79460555 | Msa1127780:CDS |
| CACACATTGAGGAATCTCTT+TGG | 0.368358 | 7_3:-79458727 | Msa1127780:CDS |
| TACCACTTCCATCCCGGATC+TGG | 0.372412 | 7_3:-79460131 | Msa1127780:CDS |
| ATAATGTTTGTCAGTATGTT+TGG | 0.373579 | 7_3:-79460171 | Msa1127780:intron |
| TTCCATCCCGGATCTGGATC+TGG | 0.382531 | 7_3:-79460125 | Msa1127780:CDS |
| TCTCTCACCTCGGGATATCT+TGG | 0.388144 | 7_3:-79460652 | Msa1127780:CDS |
| TCATGAGAGGTTGAGGCAGC+AGG | 0.395767 | 7_3:+79460577 | None:intergenic |
| CACGGGTATCTCGACTAGTT+TGG | 0.402218 | 7_3:-79460908 | Msa1127780:five_prime_UTR |
| ACAAGAATTTATGAATAATC+CGG | 0.416697 | 7_3:+79457903 | None:intergenic |
| TGACAATACCTGCCATAATC+TGG | 0.417076 | 7_3:-79457460 | Msa1127780:CDS |
| CAGCAGATCCTCATGGATCT+TGG | 0.417631 | 7_3:-79458139 | Msa1127780:CDS |
| TTTCCAACGGCAATCGCAAT+TGG | 0.423077 | 7_3:+79457534 | None:intergenic |
| TCATGCATACCATGTTGTTA+AGG | 0.424811 | 7_3:+79457824 | None:intergenic |
| TGGATGCTCTGCGGGTGGTC+TGG | 0.427319 | 7_3:-79458949 | Msa1127780:CDS |
| CACTCTCCAATGTGTGGTAC+TGG | 0.428230 | 7_3:+79460831 | None:intergenic |
| TCCAATATGGAAAACCTTGT+TGG | 0.438519 | 7_3:+79459043 | None:intergenic |
| GATATAATGAGGCCATTAGA+TGG | 0.438882 | 7_3:-79455658 | Msa1127780:three_prime_UTR |
| GGAAATATTCTCTATGCTAC+AGG | 0.444665 | 7_3:-79455727 | Msa1127780:three_prime_UTR |
| GCTTGAAGTTACAAGATTCA+AGG | 0.445102 | 7_3:-79455807 | Msa1127780:three_prime_UTR |
| ATCAGAAAATTACCGAAGTT+GGG | 0.457711 | 7_3:+79458511 | None:intergenic |
| CGATGTCGTTTCAGTTCCAT+TGG | 0.458197 | 7_3:-79460625 | Msa1127780:CDS |
| CAGTAGTAAAATAAGAGTAT+AGG | 0.460029 | 7_3:+79455504 | None:intergenic |
| AAATAGTTGGCTCATTCAAT+TGG | 0.461267 | 7_3:-79460099 | Msa1127780:CDS |
| CATGAGGATCTGCTGAATGC+GGG | 0.468931 | 7_3:+79458147 | None:intergenic |
| TTGCTCAATAATCCAGTGAA+TGG | 0.470456 | 7_3:+79459854 | None:intergenic |
| CATGTAGAACTGATATATCT+GGG | 0.473034 | 7_3:-79458753 | Msa1127780:intron |
| CGCTACCCGTGCTGTAGCAC+GGG | 0.475949 | 7_3:-79460925 | Msa1127780:five_prime_UTR |
| GTGAAATGTTTGAGTGATGC+TGG | 0.478196 | 7_3:-79458873 | Msa1127780:CDS |
| GTAGCCTGTAGGTGGTTGAT+TGG | 0.479626 | 7_3:-79455693 | Msa1127780:three_prime_UTR |
| TAGCCTGTAGGTGGTTGATT+GGG | 0.485955 | 7_3:-79455692 | Msa1127780:three_prime_UTR |
| CAGCCAATTGCGATTGCCGT+TGG | 0.487578 | 7_3:-79457537 | Msa1127780:CDS |
| CTGGATCTGGTGCAAATAGT+TGG | 0.489001 | 7_3:-79460112 | Msa1127780:CDS |
| AGGTTGAGGCAGCAGGGGAG+AGG | 0.498501 | 7_3:+79460584 | None:intergenic |
| TCAAAGTGAGGTACTGTGAT+GGG | 0.499780 | 7_3:-79459699 | Msa1127780:CDS |
| TGCTATATTCCCGCTCTACA+AGG | 0.500855 | 7_3:-79455964 | Msa1127780:CDS |
| GAAAGTATGCCAGGTTGGAA+TGG | 0.504383 | 7_3:-79455748 | Msa1127780:three_prime_UTR |
| GACACTAGTGAAAGTATGCC+AGG | 0.505135 | 7_3:-79455757 | Msa1127780:three_prime_UTR |
| GCGCTACCCGTGCTGTAGCA+CGG | 0.505788 | 7_3:-79460926 | Msa1127780:five_prime_UTR |
| TGTTTGGATGGAACTTTACC+TGG | 0.506783 | 7_3:-79460155 | Msa1127780:CDS |
| ATGCTATGTACAAGTGGTGT+TGG | 0.507359 | 7_3:-79455616 | Msa1127780:three_prime_UTR |
| CCTGGTTACCACTTCCATCC+CGG | 0.507770 | 7_3:-79460137 | Msa1127780:CDS |
| ATTCCCAATCAACCACCTAC+AGG | 0.511550 | 7_3:+79455689 | None:intergenic |
| AGTGGGATCATGAGAGGTTG+AGG | 0.515339 | 7_3:+79460570 | None:intergenic |
| GAGTGTCAAAATTACTTTGG+AGG | 0.515481 | 7_3:+79458066 | None:intergenic |
| ATCACTCAAACATTTCACTT+TGG | 0.516658 | 7_3:+79458878 | None:intergenic |
| ATTCATGGAGCTGATTCAAA+AGG | 0.519185 | 7_3:-79460540 | Msa1127780:CDS |
| ATTATGGCAGGTATTGTCAC+AGG | 0.520288 | 7_3:+79457464 | None:intergenic |
| ATTTGCACCAGATCCAGATC+CGG | 0.521168 | 7_3:+79460118 | None:intergenic |
| TCTAAAGACACAACTTCTGA+TGG | 0.522097 | 7_3:+79459922 | None:intergenic |
| GGAGCTGATTCAAAAGGAGC+AGG | 0.529067 | 7_3:-79460534 | Msa1127780:intron |
| AAAAGTCAACCTTGTAGAGC+GGG | 0.529390 | 7_3:+79455955 | None:intergenic |
| AATAAAGCTGAAGAAAATCC+TGG | 0.530795 | 7_3:-79459833 | Msa1127780:intron |
| CCGGGATGGAAGTGGTAACC+AGG | 0.532137 | 7_3:+79460137 | None:intergenic |
| CATGAGAGGTTGAGGCAGCA+GGG | 0.533233 | 7_3:+79460578 | None:intergenic |
| TAGTTGGCTCATTCAATTGG+AGG | 0.533513 | 7_3:-79460096 | Msa1127780:intron |
| ATCCAGATCCGGGATGGAAG+TGG | 0.540621 | 7_3:+79460129 | None:intergenic |
| ATGTACAAGTGGTGTTGGAT+TGG | 0.540964 | 7_3:-79455611 | Msa1127780:three_prime_UTR |
| GTTCTGAGAAATGAGAAGAA+TGG | 0.547125 | 7_3:-79460757 | Msa1127780:exon |
| ACGCGGTTCCTCAAAATACA+TGG | 0.548149 | 7_3:-79459888 | Msa1127780:CDS |
| CTTGAAGACCAGATTATGGC+AGG | 0.552753 | 7_3:+79457452 | None:intergenic |
| ACATTGAGGAATCTCTTTGG+AGG | 0.553002 | 7_3:-79458724 | Msa1127780:CDS |
| TTTGCACCAGATCCAGATCC+GGG | 0.553031 | 7_3:+79460119 | None:intergenic |
| TGTGATGGGGCGTCTTTCAG+TGG | 0.553061 | 7_3:-79459685 | Msa1127780:CDS |
| AATAGATGCTTGATATAATG+AGG | 0.553366 | 7_3:-79455669 | Msa1127780:three_prime_UTR |
| ATGAGAGGTTGAGGCAGCAG+GGG | 0.553504 | 7_3:+79460579 | None:intergenic |
| TGCATACCATGTTGTTAAGG+AGG | 0.557052 | 7_3:+79457827 | None:intergenic |
| GACACAGAATCTCTCACCTC+GGG | 0.557126 | 7_3:-79460661 | Msa1127780:CDS |
| GCATACCATGTTGTTAAGGA+GGG | 0.557350 | 7_3:+79457828 | None:intergenic |
| CACCAGATCCAGATCCGGGA+TGG | 0.559180 | 7_3:+79460123 | None:intergenic |
| TGTTTGTCAGTATGTTTGGA+TGG | 0.563064 | 7_3:-79460167 | Msa1127780:intron |
| AAATTACCGAAGTTGGGTCC+AGG | 0.563109 | 7_3:+79458517 | None:intergenic |
| CCGCATTCAGCAGATCCTCA+TGG | 0.567304 | 7_3:-79458146 | Msa1127780:CDS |
| TAAAAGTCAACCTTGTAGAG+CGG | 0.575730 | 7_3:+79455954 | None:intergenic |
| TGCAGCTTATGATGCATGGC+AGG | 0.576179 | 7_3:-79458357 | Msa1127780:intron |
| ATGTATCTTGTCTCTCCGAT+TGG | 0.579548 | 7_3:+79457869 | None:intergenic |
| ATTGAAGAATTAATGTCGAA+GGG | 0.581479 | 7_3:-79459077 | Msa1127780:CDS |
| TAACCACCTGGACCCAACTT+CGG | 0.583326 | 7_3:-79458523 | Msa1127780:intron |
| CTCTCCCCTCCTTAACAACA+TGG | 0.586154 | 7_3:-79457833 | Msa1127780:intron |
| AATTGAAGAATTAATGTCGA+AGG | 0.586251 | 7_3:-79459078 | Msa1127780:CDS |
| GCTCCATGAATGAGAGTGAG+TGG | 0.593083 | 7_3:+79460552 | None:intergenic |
| AGAATATTTCCATTCCAACC+TGG | 0.593642 | 7_3:+79455739 | None:intergenic |
| CTAGTGAAAGTATGCCAGGT+TGG | 0.594005 | 7_3:-79455753 | Msa1127780:three_prime_UTR |
| TTATCTGGATGCTCTGCGGG+TGG | 0.594030 | 7_3:-79458954 | Msa1127780:CDS |
| CTGATGCTGTAGCCTGTAGG+TGG | 0.594319 | 7_3:-79455701 | Msa1127780:three_prime_UTR |
| CCATGAGGATCTGCTGAATG+CGG | 0.598787 | 7_3:+79458146 | None:intergenic |
| ATTCTGATGCTGTAGCCTGT+AGG | 0.603970 | 7_3:-79455704 | Msa1127780:three_prime_UTR |
| GTCAAAGTGAGGTACTGTGA+TGG | 0.606987 | 7_3:-79459700 | Msa1127780:CDS |
| TGAATGCAGCTTATGATGCA+TGG | 0.609693 | 7_3:-79458361 | Msa1127780:CDS |
| ACCACACATTGGAGAGTGTG+AGG | 0.612366 | 7_3:-79460826 | Msa1127780:five_prime_UTR |
| TGTAGAGCGGGAATATAGCA+TGG | 0.614931 | 7_3:+79455967 | None:intergenic |
| ATTACATGCTCATAATACAC+TGG | 0.616690 | 7_3:-79455896 | Msa1127780:exon |
| TTAAAATTCGAATTACACAA+TGG | 0.623052 | 7_3:-79455868 | Msa1127780:three_prime_UTR |
| CGGGAATATAGCATGGAGGT+AGG | 0.623170 | 7_3:+79455974 | None:intergenic |
| CATACCATGTTGTTAAGGAG+GGG | 0.624484 | 7_3:+79457829 | None:intergenic |
| AGATACCCGTGCTACAGCAC+GGG | 0.625035 | 7_3:+79460920 | None:intergenic |
| TGACACGAGAAAATAAAGAT+CGG | 0.626389 | 7_3:-79460868 | Msa1127780:five_prime_UTR |
| CTCCATGAATGAGAGTGAGT+GGG | 0.626990 | 7_3:+79460553 | None:intergenic |
| ATGAGGATCTGCTGAATGCG+GGG | 0.632595 | 7_3:+79458148 | None:intergenic |
| GGGAATGAAGAACGCCAACA+AGG | 0.633094 | 7_3:-79459057 | Msa1127780:intron |
| AGAGTGAGTGGGATCATGAG+AGG | 0.634312 | 7_3:+79460564 | None:intergenic |
| CCCTCACACTCTCCAATGTG+TGG | 0.635107 | 7_3:+79460825 | None:intergenic |
| AATCGGAGAGACAAGATACA+TGG | 0.638574 | 7_3:-79457867 | Msa1127780:CDS |
| GAACGTATATCATCTGCCAA+TGG | 0.639888 | 7_3:+79460609 | None:intergenic |
| ATGTAGAACTGATATATCTG+GGG | 0.646188 | 7_3:-79458752 | Msa1127780:intron |
| CAAAGTGAGGTACTGTGATG+GGG | 0.646787 | 7_3:-79459698 | Msa1127780:CDS |
| CAAATGCTAAATGACATCAA+AGG | 0.647217 | 7_3:-79457946 | Msa1127780:CDS |
| AGACACAGAATCTCTCACCT+CGG | 0.647432 | 7_3:-79460662 | Msa1127780:CDS |
| TGTAGAACTGATATATCTGG+GGG | 0.648311 | 7_3:-79458751 | Msa1127780:intron |
| GCTGCATTCAGCAGAAACAG+TGG | 0.652873 | 7_3:+79458374 | None:intergenic |
| AAAGATCCAGTACCACACAT+TGG | 0.653893 | 7_3:-79460837 | Msa1127780:five_prime_UTR |
| GAGATACCCGTGCTACAGCA+CGG | 0.665167 | 7_3:+79460919 | None:intergenic |
| TTATGGCAGGTATTGTCACA+GGG | 0.675845 | 7_3:+79457465 | None:intergenic |
| CAATTATTCCAAGATCCATG+AGG | 0.680551 | 7_3:+79458131 | None:intergenic |
| TTACCGAAGTTGGGTCCAGG+TGG | 0.682863 | 7_3:+79458520 | None:intergenic |
| CCACACATTGGAGAGTGTGA+GGG | 0.689462 | 7_3:-79460825 | Msa1127780:five_prime_UTR |
| CAGTGGAGACAGTCAAAACG+AGG | 0.693681 | 7_3:-79459668 | Msa1127780:intron |
| GCAATGATGCTATGTACAAG+TGG | 0.693869 | 7_3:-79455622 | Msa1127780:three_prime_UTR |
| ACTGGAACAGAGTCAAAGTG+AGG | 0.697951 | 7_3:-79459711 | Msa1127780:CDS |
| GATCTCGTGAGATCTAACTG+AGG | 0.728818 | 7_3:+79460689 | None:intergenic |
| TATGGCAGGTATTGTCACAG+GGG | 0.750427 | 7_3:+79457466 | None:intergenic |
| GTAGAACTGATATATCTGGG+GGG | 0.773485 | 7_3:-79458750 | Msa1127780:intron |
| AGAGCGGGAATATAGCATGG+AGG | 0.786321 | 7_3:+79455970 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTAGTTAAATTATTCTT+TGG | - | chr7_3:79456751-79456770 | Msa1127780:intron | 15.0% |
| !! | TTGTTATAGAAAAACATTAT+TGG | - | chr7_3:79458951-79458970 | Msa1127780:CDS | 15.0% |
| !! | TTGCTTTAATAAAATTTCTT+TGG | - | chr7_3:79459019-79459038 | Msa1127780:intron | 15.0% |
| !!! | TAAAAGTATAATATCTTCAA+GGG | + | chr7_3:79459077-79459096 | None:intergenic | 15.0% |
| !!! | ATAAAAGTATAATATCTTCA+AGG | + | chr7_3:79459078-79459097 | None:intergenic | 15.0% |
| !! | AAGTTAATAAAATGATAGAT+TGG | - | chr7_3:79459172-79459191 | Msa1127780:intron | 15.0% |
| !! | ATTTAAATGTGAAATTTCAA+TGG | - | chr7_3:79459521-79459540 | Msa1127780:intron | 15.0% |
| !!! | CATATCATCATAAGTTTTTT+TGG | + | chr7_3:79455903-79455922 | None:intergenic | 20.0% |
| !!! | GTTATGTGTTATAATTTTTG+TGG | - | chr7_3:79456531-79456550 | Msa1127780:intron | 20.0% |
| !!! | TTTTTCCAATTTTTGTTAAG+AGG | - | chr7_3:79456678-79456697 | Msa1127780:intron | 20.0% |
| !! | AAAATCCTCTTAACAAAAAT+TGG | + | chr7_3:79456686-79456705 | None:intergenic | 20.0% |
| !! | TGTATGTCAATGATAATAAT+AGG | + | chr7_3:79456714-79456733 | None:intergenic | 20.0% |
| !!! | AATTATTCTTTGGAAATTTG+TGG | - | chr7_3:79456761-79456780 | Msa1127780:intron | 20.0% |
| !!! | AAATCTCTTTTCTAATGAAT+GGG | - | chr7_3:79457081-79457100 | Msa1127780:intron | 20.0% |
| !!! | TGCTAATGATTTTTTTTTTC+AGG | - | chr7_3:79457312-79457331 | Msa1127780:intron | 20.0% |
| !! | ACAAGAATTTATGAATAATC+CGG | + | chr7_3:79458394-79458413 | None:intergenic | 20.0% |
| !! | TAGAGACTAAAAATTATTTG+TGG | - | chr7_3:79458604-79458623 | Msa1127780:intron | 20.0% |
| !! | AAGAATGATAAATTCACAAA+TGG | + | chr7_3:79458929-79458948 | None:intergenic | 20.0% |
| !!! | CATTTTATTAACTTGAAAAG+TGG | + | chr7_3:79459166-79459185 | None:intergenic | 20.0% |
| !! | TCAATCTATCAAATATGATT+TGG | - | chr7_3:79459405-79459424 | Msa1127780:intron | 20.0% |
| !! | TAAATTCATCATTACAAAAC+TGG | - | chr7_3:79459977-79459996 | Msa1127780:intron | 20.0% |
| !! | TTAAAATTCGAATTACACAA+TGG | - | chr7_3:79460426-79460445 | Msa1127780:intron | 20.0% |
| !!! | ATCAGTAGCTTATTTTCATA+AGG | - | chr7_3:79455936-79455955 | Msa1127780:CDS | 25.0% |
| ! | ATAATGTTTGTCAGTATGTT+TGG | - | chr7_3:79456123-79456142 | Msa1127780:intron | 25.0% |
| !!! | ATGTTCAAGTATTTTGATCA+TGG | - | chr7_3:79456222-79456241 | Msa1127780:intron | 25.0% |
| !!! | TGTTCAAGTATTTTGATCAT+GGG | - | chr7_3:79456223-79456242 | Msa1127780:intron | 25.0% |
| !! | TGTTTGAAAACTTTTCTTCA+GGG | - | chr7_3:79456332-79456351 | Msa1127780:intron | 25.0% |
| !!! | TTGTTTTTCCATGTATTTTG+AGG | + | chr7_3:79456417-79456436 | None:intergenic | 25.0% |
| !! | AAAAAACACCATTCATTTTG+TGG | - | chr7_3:79456788-79456807 | Msa1127780:intron | 25.0% |
| !!! | TTTATTAGTCTTTGCTAGTA+TGG | - | chr7_3:79457055-79457074 | Msa1127780:intron | 25.0% |
| !! | GAAATCTCTTTTCTAATGAA+TGG | - | chr7_3:79457080-79457099 | Msa1127780:intron | 25.0% |
| ! | AATTTAGAGGACAGAAAATA+TGG | - | chr7_3:79457185-79457204 | Msa1127780:intron | 25.0% |
| ! | AATTGAAGAATTAATGTCGA+AGG | - | chr7_3:79457216-79457235 | Msa1127780:intron | 25.0% |
| ! | ATTGAAGAATTAATGTCGAA+GGG | - | chr7_3:79457217-79457236 | Msa1127780:intron | 25.0% |
| ! | AAAATTACGACATTCCAATA+TGG | + | chr7_3:79457267-79457286 | None:intergenic | 25.0% |
| ! | AAAAAAATCATTAGCATCCA+TGG | + | chr7_3:79457308-79457327 | None:intergenic | 25.0% |
| ! | ACAATTATATCCAAGTTTAC+AGG | + | chr7_3:79457508-79457527 | None:intergenic | 25.0% |
| !! | ATACAAGTTTTCTAACAGAA+AGG | + | chr7_3:79457683-79457702 | None:intergenic | 25.0% |
| !! | AATCTTTTCCTCTTCTATTT+CGG | - | chr7_3:79458551-79458570 | Msa1127780:CDS | 25.0% |
| ! | CTGAGAACAATAAAAAGAAA+GGG | + | chr7_3:79458700-79458719 | None:intergenic | 25.0% |
| ! | TCTGAGAACAATAAAAAGAA+AGG | + | chr7_3:79458701-79458720 | None:intergenic | 25.0% |
| ! | ATCAAAAAACCAATTTCCAA+CGG | + | chr7_3:79458776-79458795 | None:intergenic | 25.0% |
| !! | TAGAAAAACATTATTGGCTA+AGG | - | chr7_3:79458957-79458976 | Msa1127780:CDS | 25.0% |
| ! | GGTCTATTATATTCACTTAT+AGG | - | chr7_3:79458996-79459015 | Msa1127780:intron | 25.0% |
| !! | ATCCAATTATAATTTTCCCA+AGG | - | chr7_3:79459096-79459115 | Msa1127780:CDS | 25.0% |
| ! | TTTGAGTCATTACAATTCAT+TGG | - | chr7_3:79459308-79459327 | Msa1127780:intron | 25.0% |
| ! | TGGAATGATTACATTTGAAA+TGG | - | chr7_3:79459355-79459374 | Msa1127780:intron | 25.0% |
| !!! | CTTTTGTTTATATTTGAGTC+CGG | - | chr7_3:79459428-79459447 | Msa1127780:intron | 25.0% |
| !!! | GGGTTGATTTTAAGATTTAA+GGG | + | chr7_3:79459572-79459591 | None:intergenic | 25.0% |
| !!! | TGGGTTGATTTTAAGATTTA+AGG | + | chr7_3:79459573-79459592 | None:intergenic | 25.0% |
| ! | CTTAAAATCAACCCAATATT+CGG | - | chr7_3:79459578-79459597 | Msa1127780:intron | 25.0% |
| ! | TTAAAATCAACCCAATATTC+GGG | - | chr7_3:79459579-79459598 | Msa1127780:intron | 25.0% |
| ! | TGAATTAGAGAAAAGAAAGA+AGG | + | chr7_3:79460122-79460141 | None:intergenic | 25.0% |
| !!! | TAAGAATTTTAGTTCCATCA+TGG | + | chr7_3:79460274-79460293 | None:intergenic | 25.0% |
| ! | AATAGATGCTTGATATAATG+AGG | - | chr7_3:79460625-79460644 | Msa1127780:CDS | 25.0% |
| !! | CAGTAGTAAAATAAGAGTAT+AGG | + | chr7_3:79460793-79460812 | None:intergenic | 25.0% |
| TGACACGAGAAAATAAAGAT+CGG | - | chr7_3:79455426-79455445 | Msa1127780:three_prime_UTR | 30.0% | |
| !! | TAGCTTATTTTCATAAGGTC+TGG | - | chr7_3:79455941-79455960 | Msa1127780:CDS | 30.0% |
| TTTCATGTCTTCACTATTCA+TGG | - | chr7_3:79456040-79456059 | Msa1127780:intron | 30.0% | |
| ! | ACCTAGTATTTTGTCTCAAA+TGG | - | chr7_3:79456072-79456091 | Msa1127780:intron | 30.0% |
| ! | TCCATTTGAGACAAAATACT+AGG | + | chr7_3:79456076-79456095 | None:intergenic | 30.0% |
| ! | AAATAGTTGGCTCATTCAAT+TGG | - | chr7_3:79456195-79456214 | Msa1127780:intron | 30.0% |
| ! | CTGAAGAAAAGTTTTCAAAC+AGG | + | chr7_3:79456333-79456352 | None:intergenic | 30.0% |
| ! | CTGTTTGAAAACTTTTCTTC+AGG | - | chr7_3:79456331-79456350 | Msa1127780:intron | 30.0% |
| AATAAAGCTGAAGAAAATCC+TGG | - | chr7_3:79456461-79456480 | Msa1127780:intron | 30.0% | |
| !!! | TGTGCACAGATTTTTTTAAC+TGG | - | chr7_3:79456565-79456584 | Msa1127780:intron | 30.0% |
| ! | GCAAATGTACATTTTTCTTG+TGG | - | chr7_3:79456977-79456996 | Msa1127780:intron | 30.0% |
| GTATGAATTCACAAGTCAAT+TGG | + | chr7_3:79457143-79457162 | None:intergenic | 30.0% | |
| TATTCAATCATAGATGTCCA+TGG | - | chr7_3:79457288-79457307 | Msa1127780:intron | 30.0% | |
| !!! | TTTTTTCAGGCTCTTTTATC+TGG | - | chr7_3:79457325-79457344 | Msa1127780:intron | 30.0% |
| !! | TAGATTTTGGAAACAAGCTT+TGG | + | chr7_3:79457396-79457415 | None:intergenic | 30.0% |
| ! | CATTTCACTTTGGTAGATTT+TGG | + | chr7_3:79457409-79457428 | None:intergenic | 30.0% |
| ATCACTCAAACATTTCACTT+TGG | + | chr7_3:79457419-79457438 | None:intergenic | 30.0% | |
| TCATGTAGAACTGATATATC+TGG | - | chr7_3:79457540-79457559 | Msa1127780:intron | 30.0% | |
| CATGTAGAACTGATATATCT+GGG | - | chr7_3:79457541-79457560 | Msa1127780:intron | 30.0% | |
| ATGTAGAACTGATATATCTG+GGG | - | chr7_3:79457542-79457561 | Msa1127780:intron | 30.0% | |
| !! | ATTGACGTCTTTGAAATTGT+AGG | - | chr7_3:79457717-79457736 | Msa1127780:intron | 30.0% |
| ATCAGAAAATTACCGAAGTT+GGG | + | chr7_3:79457786-79457805 | None:intergenic | 30.0% | |
| AATCAGAAAATTACCGAAGT+TGG | + | chr7_3:79457787-79457806 | None:intergenic | 30.0% | |
| ! | ACATGATCGATCAAATTTTG+AGG | + | chr7_3:79457893-79457912 | None:intergenic | 30.0% |
| !! | AGAGAGTGTCAAAATTACTT+TGG | + | chr7_3:79458234-79458253 | None:intergenic | 30.0% |
| CAAATGCTAAATGACATCAA+AGG | - | chr7_3:79458348-79458367 | Msa1127780:intron | 30.0% | |
| !! | ACTGTACTATTTTAGAAGCA+CGG | + | chr7_3:79458506-79458525 | None:intergenic | 30.0% |
| !! | TGCTTCTAAAATAGTACAGT+TGG | - | chr7_3:79458506-79458525 | Msa1127780:intron | 30.0% |
| AACAATAAAAAGAAAGGGAG+AGG | + | chr7_3:79458695-79458714 | None:intergenic | 30.0% | |
| CAAAGTTATTGTCTTTCGTA+CGG | - | chr7_3:79458870-79458889 | Msa1127780:CDS | 30.0% | |
| ! | TAAGGCCATTACAACTTTTT+GGG | - | chr7_3:79458975-79458994 | Msa1127780:intron | 30.0% |
| ATAGACCCAAAAAGTTGTAA+TGG | + | chr7_3:79458983-79459002 | None:intergenic | 30.0% | |
| ! | TAATGCAGACTCAGTAATTT+TGG | + | chr7_3:79459054-79459073 | None:intergenic | 30.0% |
| GTCCTTGGGAAAATTATAAT+TGG | + | chr7_3:79459101-79459120 | None:intergenic | 30.0% | |
| AAGTGGTGCAATTAAAAAGA+AGG | + | chr7_3:79459149-79459168 | None:intergenic | 30.0% | |
| GAGTCAATCTAGATTTCATA+AGG | - | chr7_3:79459209-79459228 | Msa1127780:intron | 30.0% | |
| TGACTCAAATGATCGATAAA+AGG | + | chr7_3:79459297-79459316 | None:intergenic | 30.0% | |
| ATTCCAAAAATACCCTTTCA+CGG | + | chr7_3:79459341-79459360 | None:intergenic | 30.0% | |
| TAAGGGATCATGATACAATA+GGG | + | chr7_3:79459555-79459574 | None:intergenic | 30.0% | |
| TTAAGGGATCATGATACAAT+AGG | + | chr7_3:79459556-79459575 | None:intergenic | 30.0% | |
| ATGTTGGATTGTATTGGAAT+AGG | - | chr7_3:79459708-79459727 | Msa1127780:CDS | 30.0% | |
| !! | AATTTGTTGAGTGACTTGAA+TGG | - | chr7_3:79459788-79459807 | Msa1127780:intron | 30.0% |
| TAACTATCCAGTGTTCTATA+AGG | + | chr7_3:79459842-79459861 | None:intergenic | 30.0% | |
| CCTAATATCACAACTTAAGA+TGG | + | chr7_3:79459956-79459975 | None:intergenic | 30.0% | |
| ! | CCATCTTAAGTTGTGATATT+AGG | - | chr7_3:79459953-79459972 | Msa1127780:intron | 30.0% |
| TTCTTAAAATGAGACGATGT+AGG | + | chr7_3:79460085-79460104 | None:intergenic | 30.0% | |
| AAGAAAGAAGGTGAAATTTC+TGG | + | chr7_3:79460110-79460129 | None:intergenic | 30.0% | |
| GGAAATAAAAATGGAAGGAA+GGG | + | chr7_3:79460238-79460257 | None:intergenic | 30.0% | |
| AGATGGGAAATAAAAATGGA+AGG | + | chr7_3:79460243-79460262 | None:intergenic | 30.0% | |
| GTGTATTATGAGCATGTAAT+TGG | + | chr7_3:79460398-79460417 | None:intergenic | 30.0% | |
| ATTACATGCTCATAATACAC+TGG | - | chr7_3:79460398-79460417 | Msa1127780:intron | 30.0% | |
| TTCTTCTCATTTCTCAGAAC+AGG | + | chr7_3:79455537-79455556 | None:intergenic | 35.0% | |
| !! | GTTCTGAGAAATGAGAAGAA+TGG | - | chr7_3:79455537-79455556 | Msa1127780:intron | 35.0% |
| ! | ATTCATGGAGCTGATTCAAA+AGG | - | chr7_3:79455754-79455773 | Msa1127780:three_prime_UTR | 35.0% |
| TGTTTGTCAGTATGTTTGGA+TGG | - | chr7_3:79456127-79456146 | Msa1127780:intron | 35.0% | |
| !!! | AGTATTTTGATCATGGGTCT+CGG | - | chr7_3:79456229-79456248 | Msa1127780:intron | 35.0% |
| ! | TTGAAAACTTTTCTTCAGGG+AGG | - | chr7_3:79456335-79456354 | Msa1127780:intron | 35.0% |
| TCTAAAGACACAACTTCTGA+TGG | + | chr7_3:79456375-79456394 | None:intergenic | 35.0% | |
| TTTAGAAAAACTACTCGACG+CGG | - | chr7_3:79456389-79456408 | Msa1127780:intron | 35.0% | |
| GAAAAACAACTACCATTCAC+TGG | - | chr7_3:79456428-79456447 | Msa1127780:intron | 35.0% | |
| TTGCTCAATAATCCAGTGAA+TGG | + | chr7_3:79456443-79456462 | None:intergenic | 35.0% | |
| GCAGATTTCAGTACACATAT+GGG | + | chr7_3:79456509-79456528 | None:intergenic | 35.0% | |
| GAATCATGCCACAAAATGAA+TGG | + | chr7_3:79456799-79456818 | None:intergenic | 35.0% | |
| AGAGGTAAAACTATGGTTGT+TGG | - | chr7_3:79456853-79456872 | Msa1127780:intron | 35.0% | |
| GTTGGATTACTCTATTATCC+TGG | - | chr7_3:79456871-79456890 | Msa1127780:intron | 35.0% | |
| ! | CAAACATGATTTGTATGACC+AGG | + | chr7_3:79456892-79456911 | None:intergenic | 35.0% |
| ! | ATGTACATTTTTCTTGTGGC+AGG | - | chr7_3:79456981-79457000 | Msa1127780:intron | 35.0% |
| !! | ATTAGTCTTTGCTAGTATGG+AGG | - | chr7_3:79457058-79457077 | Msa1127780:intron | 35.0% |
| TCCAATATGGAAAACCTTGT+TGG | + | chr7_3:79457254-79457273 | None:intergenic | 35.0% | |
| TGTAGAACTGATATATCTGG+GGG | - | chr7_3:79457543-79457562 | Msa1127780:intron | 35.0% | |
| ! | AGGTGGTTAAGACAACTTTT+TGG | + | chr7_3:79457760-79457779 | None:intergenic | 35.0% |
| AAAAAGTTGTCTTAACCACC+TGG | - | chr7_3:79457759-79457778 | Msa1127780:intron | 35.0% | |
| GTTGGTTAAACTAGAAGCTA+TGG | + | chr7_3:79458063-79458082 | None:intergenic | 35.0% | |
| !! | TAGCTTCTAGTTTAACCAAC+TGG | - | chr7_3:79458063-79458082 | Msa1127780:intron | 35.0% |
| TATATACCACAAACACCAGT+TGG | + | chr7_3:79458081-79458100 | None:intergenic | 35.0% | |
| CAATTATTCCAAGATCCATG+AGG | + | chr7_3:79458166-79458185 | None:intergenic | 35.0% | |
| ! | ACTTTGGAGGATCTGAATTT+GGG | + | chr7_3:79458218-79458237 | None:intergenic | 35.0% |
| ! | TACTTTGGAGGATCTGAATT+TGG | + | chr7_3:79458219-79458238 | None:intergenic | 35.0% |
| GAGTGTCAAAATTACTTTGG+AGG | + | chr7_3:79458231-79458250 | None:intergenic | 35.0% | |
| ! | TTTTCAACGACTTCTCAATC+CGG | - | chr7_3:79458372-79458391 | Msa1127780:CDS | 35.0% |
| !! | TTGTTTTGCTCATTGCCAAT+CGG | - | chr7_3:79458410-79458429 | Msa1127780:CDS | 35.0% |
| TCATGCATACCATGTTGTTA+AGG | + | chr7_3:79458473-79458492 | None:intergenic | 35.0% | |
| ! | CCAATTTTCCGAAATAGAAG+AGG | + | chr7_3:79458562-79458581 | None:intergenic | 35.0% |
| CCTCTTCTATTTCGGAAAAT+TGG | - | chr7_3:79458559-79458578 | Msa1127780:intron | 35.0% | |
| GGAAATACTGAGAGAGATAA+TGG | - | chr7_3:79458580-79458599 | Msa1127780:intron | 35.0% | |
| ! | CTAAGGCCATTACAACTTTT+TGG | - | chr7_3:79458974-79458993 | Msa1127780:intron | 35.0% |
| AAGGGATCATGATACAATAG+GGG | + | chr7_3:79459554-79459573 | None:intergenic | 35.0% | |
| AGTTAAAGAGGTCATGTGTT+TGG | - | chr7_3:79459681-79459700 | Msa1127780:CDS | 35.0% | |
| ! | TCATGTGTTTGGTTTCATGT+TGG | - | chr7_3:79459692-79459711 | Msa1127780:CDS | 35.0% |
| GGTTTCATGTTGGATTGTAT+TGG | - | chr7_3:79459702-79459721 | Msa1127780:CDS | 35.0% | |
| ! | AAATCAATTACTGATGGACG+TGG | + | chr7_3:79459757-79459776 | None:intergenic | 35.0% |
| ACGTCCATCAGTAATTGATT+TGG | - | chr7_3:79459756-79459775 | Msa1127780:intron | 35.0% | |
| CACACCAAATCAATTACTGA+TGG | + | chr7_3:79459763-79459782 | None:intergenic | 35.0% | |
| !! | TCAGTAATTGATTTGGTGTG+TGG | - | chr7_3:79459763-79459782 | Msa1127780:intron | 35.0% |
| AGTTCATCCTTATAGAACAC+TGG | - | chr7_3:79459832-79459851 | Msa1127780:intron | 35.0% | |
| GTGTTTGGTATCATGTTGAA+TGG | - | chr7_3:79459873-79459892 | Msa1127780:CDS | 35.0% | |
| GTATCATGTTGAATGGCATT+GGG | - | chr7_3:79459880-79459899 | Msa1127780:CDS | 35.0% | |
| ! | ATTTTCGTGCTTTACAGTGT+TGG | - | chr7_3:79460163-79460182 | Msa1127780:intron | 35.0% |
| TAAGGTAAATGTCAACCTTG+TGG | + | chr7_3:79460215-79460234 | None:intergenic | 35.0% | |
| TAAAAATGGAAGGAAGGGTA+AGG | + | chr7_3:79460233-79460252 | None:intergenic | 35.0% | |
| GGGAAATAAAAATGGAAGGA+AGG | + | chr7_3:79460239-79460258 | None:intergenic | 35.0% | |
| GCGAAGATGGGAAATAAAAA+TGG | + | chr7_3:79460247-79460266 | None:intergenic | 35.0% | |
| TAGGAATATCATCACTGCAA+AGG | + | chr7_3:79460304-79460323 | None:intergenic | 35.0% | |
| TAAAAGTCAACCTTGTAGAG+CGG | + | chr7_3:79460343-79460362 | None:intergenic | 35.0% | |
| GCTTGAAGTTACAAGATTCA+AGG | - | chr7_3:79460487-79460506 | Msa1127780:intron | 35.0% | |
| AGAATATTTCCATTCCAACC+TGG | + | chr7_3:79460558-79460577 | None:intergenic | 35.0% | |
| GGAAATATTCTCTATGCTAC+AGG | - | chr7_3:79460567-79460586 | Msa1127780:CDS | 35.0% | |
| GATATAATGAGGCCATTAGA+TGG | - | chr7_3:79460636-79460655 | Msa1127780:CDS | 35.0% | |
| ! | CCAATTTGTTCTCCATCTAA+TGG | + | chr7_3:79460651-79460670 | None:intergenic | 35.0% |
| CCATTAGATGGAGAACAAAT+TGG | - | chr7_3:79460648-79460667 | Msa1127780:CDS | 35.0% | |
| !! | CTTAAACTTGCTTTTGCATG+GGG | + | chr7_3:79460741-79460760 | None:intergenic | 35.0% |
| !! | CCTTAAACTTGCTTTTGCAT+GGG | + | chr7_3:79460742-79460761 | None:intergenic | 35.0% |
| !! | TCCTTAAACTTGCTTTTGCA+TGG | + | chr7_3:79460743-79460762 | None:intergenic | 35.0% |
| AAAGATCCAGTACCACACAT+TGG | - | chr7_3:79455457-79455476 | Msa1127780:three_prime_UTR | 40.0% | |
| GAACGTATATCATCTGCCAA+TGG | + | chr7_3:79455688-79455707 | None:intergenic | 40.0% | |
| TGTCTTCACTATTCATGGTG+TGG | - | chr7_3:79456045-79456064 | Msa1127780:intron | 40.0% | |
| TGTTTGGATGGAACTTTACC+TGG | - | chr7_3:79456139-79456158 | Msa1127780:intron | 40.0% | |
| ! | TAGTTGGCTCATTCAATTGG+AGG | - | chr7_3:79456198-79456217 | Msa1127780:intron | 40.0% |
| ! | AAAACTTTTCTTCAGGGAGG+AGG | - | chr7_3:79456338-79456357 | Msa1127780:intron | 40.0% |
| AGGGTAAAAGGGAAAAAACC+AGG | + | chr7_3:79456482-79456501 | None:intergenic | 40.0% | |
| ATATGGGTGGAAGGGTAAAA+GGG | + | chr7_3:79456493-79456512 | None:intergenic | 40.0% | |
| GATTTCAGTACACATATGGG+TGG | + | chr7_3:79456506-79456525 | None:intergenic | 40.0% | |
| CGCAGATTTCAGTACACATA+TGG | + | chr7_3:79456510-79456529 | None:intergenic | 40.0% | |
| !! | TCAAAGTGAGGTACTGTGAT+GGG | - | chr7_3:79456595-79456614 | Msa1127780:intron | 40.0% |
| ! | TTTTTCTTGTGGCAGGAAGA+AGG | - | chr7_3:79456988-79457007 | Msa1127780:intron | 40.0% |
| ! | TGAATGGGCTCTTCTTAAGA+AGG | - | chr7_3:79457096-79457115 | Msa1127780:intron | 40.0% |
| TGTGAATTCATACCCCTTTC+AGG | - | chr7_3:79457150-79457169 | Msa1127780:intron | 40.0% | |
| ! | GCCAACAAGGTTTTCCATAT+TGG | - | chr7_3:79457250-79457269 | Msa1127780:intron | 40.0% |
| ! | TCTTTTATCTGGATGCTCTG+CGG | - | chr7_3:79457336-79457355 | Msa1127780:intron | 40.0% |
| GTGAAATGTTTGAGTGATGC+TGG | - | chr7_3:79457421-79457440 | Msa1127780:intron | 40.0% | |
| AAGTTTACAGGCAATGATGC+AGG | + | chr7_3:79457496-79457515 | None:intergenic | 40.0% | |
| TGCATCATTGCCTGTAAACT+TGG | - | chr7_3:79457495-79457514 | Msa1127780:CDS | 40.0% | |
| GTAGAACTGATATATCTGGG+GGG | - | chr7_3:79457544-79457563 | Msa1127780:intron | 40.0% | |
| CACACATTGAGGAATCTCTT+TGG | - | chr7_3:79457567-79457586 | Msa1127780:intron | 40.0% | |
| ACATTGAGGAATCTCTTTGG+AGG | - | chr7_3:79457570-79457589 | Msa1127780:intron | 40.0% | |
| GCAATGAAATCTTCTGTCAG+TGG | - | chr7_3:79457652-79457671 | Msa1127780:intron | 40.0% | |
| TGAATGCAGCTTATGATGCA+TGG | - | chr7_3:79457933-79457952 | Msa1127780:CDS | 40.0% | |
| ! | TTTGTTTCCTCGAAGTGCTA+TGG | - | chr7_3:79458029-79458048 | Msa1127780:intron | 40.0% |
| GTTTAACCAACTGGTGTTTG+TGG | - | chr7_3:79458072-79458091 | Msa1127780:intron | 40.0% | |
| ATGTATCTTGTCTCTCCGAT+TGG | + | chr7_3:79458428-79458447 | None:intergenic | 40.0% | |
| AATCGGAGAGACAAGATACA+TGG | - | chr7_3:79458427-79458446 | Msa1127780:intron | 40.0% | |
| CATACCATGTTGTTAAGGAG+GGG | + | chr7_3:79458468-79458487 | None:intergenic | 40.0% | |
| GCATACCATGTTGTTAAGGA+GGG | + | chr7_3:79458469-79458488 | None:intergenic | 40.0% | |
| TGCATACCATGTTGTTAAGG+AGG | + | chr7_3:79458470-79458489 | None:intergenic | 40.0% | |
| GAGAGCTTTCATCATAGCAA+AGG | + | chr7_3:79458635-79458654 | None:intergenic | 40.0% | |
| ! | TTATGGCAGGTATTGTCACA+GGG | + | chr7_3:79458832-79458851 | None:intergenic | 40.0% |
| ! | ATTATGGCAGGTATTGTCAC+AGG | + | chr7_3:79458833-79458852 | None:intergenic | 40.0% |
| TGACAATACCTGCCATAATC+TGG | - | chr7_3:79458834-79458853 | Msa1127780:intron | 40.0% | |
| CTCACTTGAAGACCAGATTA+TGG | + | chr7_3:79458849-79458868 | None:intergenic | 40.0% | |
| ATTGGTAGAACTCCGTGAAA+GGG | - | chr7_3:79459326-79459345 | Msa1127780:intron | 40.0% | |
| !!! | ACTCCGTGAAAGGGTATTTT+TGG | - | chr7_3:79459335-79459354 | Msa1127780:intron | 40.0% |
| GAAAACACAAGTACTCTCTC+CGG | + | chr7_3:79459450-79459469 | None:intergenic | 40.0% | |
| !!! | GGAGAGAGTACTTGTGTTTT+CGG | - | chr7_3:79459449-79459468 | Msa1127780:intron | 40.0% |
| !!! | GAGAGAGTACTTGTGTTTTC+GGG | - | chr7_3:79459450-79459469 | Msa1127780:intron | 40.0% |
| AGGTTGAAGTTGAACTACTG+TGG | - | chr7_3:79459476-79459495 | Msa1127780:intron | 40.0% | |
| AGGGATCATGATACAATAGG+GGG | + | chr7_3:79459553-79459572 | None:intergenic | 40.0% | |
| GGACAGAAATCATGAAACAG+CGG | - | chr7_3:79459656-79459675 | Msa1127780:intron | 40.0% | |
| GAAACAGCGGATAGTTAAAG+AGG | - | chr7_3:79459669-79459688 | Msa1127780:CDS | 40.0% | |
| GTTGAGTGACTTGAATGGAT+AGG | - | chr7_3:79459793-79459812 | Msa1127780:intron | 40.0% | |
| CACTGGATAGTTAAGAGAGT+TGG | - | chr7_3:79459849-79459868 | Msa1127780:CDS | 40.0% | |
| !! | GTTAAGAGAGTTGGTGTGTT+TGG | - | chr7_3:79459858-79459877 | Msa1127780:CDS | 40.0% |
| GGTATCATGTTGAATGGCAT+TGG | - | chr7_3:79459879-79459898 | Msa1127780:CDS | 40.0% | |
| ! | ATGTTGAATGGCATTGGGTT+TGG | - | chr7_3:79459885-79459904 | Msa1127780:CDS | 40.0% |
| !! | GGTTTGGTGTCTGGATAATT+TGG | - | chr7_3:79459901-79459920 | Msa1127780:CDS | 40.0% |
| ! | TTGGTGTCTGGATAATTTGG+TGG | - | chr7_3:79459904-79459923 | Msa1127780:CDS | 40.0% |
| TGGTGTCTGGATAATTTGGT+GGG | - | chr7_3:79459905-79459924 | Msa1127780:CDS | 40.0% | |
| AGTTTCACGTAAAGTAGACG+AGG | + | chr7_3:79460046-79460065 | None:intergenic | 40.0% | |
| CGTCTACTTTACGTGAAACT+TGG | - | chr7_3:79460046-79460065 | Msa1127780:intron | 40.0% | |
| AAATGAGACGATGTAGGCAT+TGG | + | chr7_3:79460079-79460098 | None:intergenic | 40.0% | |
| CATCATGGAATTGCGAAGAT+GGG | + | chr7_3:79460259-79460278 | None:intergenic | 40.0% | |
| GAATATCATCACTGCAAAGG+AGG | + | chr7_3:79460301-79460320 | None:intergenic | 40.0% | |
| AAAAGTCAACCTTGTAGAGC+GGG | + | chr7_3:79460342-79460361 | None:intergenic | 40.0% | |
| GCAATGATGCTATGTACAAG+TGG | - | chr7_3:79460672-79460691 | Msa1127780:CDS | 40.0% | |
| ATGCTATGTACAAGTGGTGT+TGG | - | chr7_3:79460678-79460697 | Msa1127780:CDS | 40.0% | |
| ! | ATGTACAAGTGGTGTTGGAT+TGG | - | chr7_3:79460683-79460702 | Msa1127780:CDS | 40.0% |
| CCCATGCAAAAGCAAGTTTA+AGG | - | chr7_3:79460739-79460758 | Msa1127780:CDS | 40.0% | |
| GATCTCGTGAGATCTAACTG+AGG | + | chr7_3:79455608-79455627 | None:intergenic | 45.0% | |
| AGACACAGAATCTCTCACCT+CGG | - | chr7_3:79455632-79455651 | Msa1127780:three_prime_UTR | 45.0% | |
| ! | TCGTTTTCCAAGATATCCCG+AGG | + | chr7_3:79455652-79455671 | None:intergenic | 45.0% |
| ! | CGATGTCGTTTCAGTTCCAT+TGG | - | chr7_3:79455669-79455688 | Msa1127780:three_prime_UTR | 45.0% |
| ATCCCACTCACTCTCATTCA+TGG | - | chr7_3:79455739-79455758 | Msa1127780:three_prime_UTR | 45.0% | |
| CTCCATGAATGAGAGTGAGT+GGG | + | chr7_3:79455744-79455763 | None:intergenic | 45.0% | |
| ATTTGCACCAGATCCAGATC+CGG | + | chr7_3:79456179-79456198 | None:intergenic | 45.0% | |
| CTGGATCTGGTGCAAATAGT+TGG | - | chr7_3:79456182-79456201 | Msa1127780:intron | 45.0% | |
| ACGCGGTTCCTCAAAATACA+TGG | - | chr7_3:79456406-79456425 | Msa1127780:intron | 45.0% | |
| CATATGGGTGGAAGGGTAAA+AGG | + | chr7_3:79456494-79456513 | None:intergenic | 45.0% | |
| CAGTACACATATGGGTGGAA+GGG | + | chr7_3:79456501-79456520 | None:intergenic | 45.0% | |
| TCAGTACACATATGGGTGGA+AGG | + | chr7_3:79456502-79456521 | None:intergenic | 45.0% | |
| ACTGGAACAGAGTCAAAGTG+AGG | - | chr7_3:79456583-79456602 | Msa1127780:intron | 45.0% | |
| !! | GTCAAAGTGAGGTACTGTGA+TGG | - | chr7_3:79456594-79456613 | Msa1127780:intron | 45.0% |
| !! | CAAAGTGAGGTACTGTGATG+GGG | - | chr7_3:79456596-79456615 | Msa1127780:intron | 45.0% |
| ACGAGGTCAGTGAGATAGTA+TGG | - | chr7_3:79456643-79456662 | Msa1127780:intron | 45.0% | |
| GCTGCACAGCTTCAATTTAG+AGG | - | chr7_3:79457172-79457191 | Msa1127780:intron | 45.0% | |
| ! | CTTTTATCTGGATGCTCTGC+GGG | - | chr7_3:79457337-79457356 | Msa1127780:intron | 45.0% |
| ! | TGGAGGTGTAGTTAGCTTAC+AGG | - | chr7_3:79457587-79457606 | Msa1127780:intron | 45.0% |
| AAATTACCGAAGTTGGGTCC+AGG | + | chr7_3:79457780-79457799 | None:intergenic | 45.0% | |
| ! | TTCCTCGAAGTGCTATGGTA+TGG | - | chr7_3:79458034-79458053 | Msa1127780:intron | 45.0% |
| ATCCATACCATAGCACTTCG+AGG | + | chr7_3:79458039-79458058 | None:intergenic | 45.0% | |
| TTTCCAACGGCAATCGCAAT+TGG | + | chr7_3:79458763-79458782 | None:intergenic | 45.0% | |
| TTGCGATTGCCGTTGGAAAT+TGG | - | chr7_3:79458764-79458783 | Msa1127780:intron | 45.0% | |
| ! | TATGGCAGGTATTGTCACAG+GGG | + | chr7_3:79458831-79458850 | None:intergenic | 45.0% |
| CTTGAAGACCAGATTATGGC+AGG | + | chr7_3:79458845-79458864 | None:intergenic | 45.0% | |
| CATTGGTAGAACTCCGTGAA+AGG | - | chr7_3:79459325-79459344 | Msa1127780:intron | 45.0% | |
| !! | GTACTTGTGTTTTCGGGCTT+AGG | - | chr7_3:79459456-79459475 | Msa1127780:intron | 45.0% |
| GAACTTCTGGCCCGAATATT+GGG | + | chr7_3:79459592-79459611 | None:intergenic | 45.0% | |
| !! | AAGGAAAGCAGTGGACTACT+CGG | + | chr7_3:79459614-79459633 | None:intergenic | 45.0% |
| TTTCCTTTCCAACACCACGT+AGG | - | chr7_3:79459627-79459646 | Msa1127780:intron | 45.0% | |
| ACGTGGATGGATGTATTCAG+AGG | + | chr7_3:79459740-79459759 | None:intergenic | 45.0% | |
| ! | CAATTACTGATGGACGTGGA+TGG | + | chr7_3:79459753-79459772 | None:intergenic | 45.0% |
| !! | CAGTGTTGGTAAATCTGCCA+TGG | - | chr7_3:79460177-79460196 | Msa1127780:intron | 45.0% |
| ! | TGTGGATTGAGAGTCTACCA+TGG | + | chr7_3:79460197-79460216 | None:intergenic | 45.0% |
| TGGTAGACTCTCAATCCACA+AGG | - | chr7_3:79460197-79460216 | Msa1127780:intron | 45.0% | |
| CCATCATGGAATTGCGAAGA+TGG | + | chr7_3:79460260-79460279 | None:intergenic | 45.0% | |
| CCATCTTCGCAATTCCATGA+TGG | - | chr7_3:79460257-79460276 | Msa1127780:intron | 45.0% | |
| TGTAGAGCGGGAATATAGCA+TGG | + | chr7_3:79460330-79460349 | None:intergenic | 45.0% | |
| TGCTATATTCCCGCTCTACA+AGG | - | chr7_3:79460330-79460349 | Msa1127780:intron | 45.0% | |
| ! | GACACTAGTGAAAGTATGCC+AGG | - | chr7_3:79460537-79460556 | Msa1127780:CDS | 45.0% |
| ! | CTAGTGAAAGTATGCCAGGT+TGG | - | chr7_3:79460541-79460560 | Msa1127780:CDS | 45.0% |
| ! | GAAAGTATGCCAGGTTGGAA+TGG | - | chr7_3:79460546-79460565 | Msa1127780:CDS | 45.0% |
| ATTCTGATGCTGTAGCCTGT+AGG | - | chr7_3:79460590-79460609 | Msa1127780:CDS | 45.0% | |
| TAGCCTGTAGGTGGTTGATT+GGG | - | chr7_3:79460602-79460621 | Msa1127780:CDS | 45.0% | |
| ATTCCCAATCAACCACCTAC+AGG | + | chr7_3:79460608-79460627 | None:intergenic | 45.0% | |
| ! | CACGGGTATCTCGACTAGTT+TGG | - | chr7_3:79455386-79455405 | Msa1127780:three_prime_UTR | 50.0% |
| CACTCTCCAATGTGTGGTAC+TGG | + | chr7_3:79455466-79455485 | None:intergenic | 50.0% | |
| ! | ACCACACATTGGAGAGTGTG+AGG | - | chr7_3:79455468-79455487 | Msa1127780:three_prime_UTR | 50.0% |
| ! | CCACACATTGGAGAGTGTGA+GGG | - | chr7_3:79455469-79455488 | Msa1127780:three_prime_UTR | 50.0% |
| GACACAGAATCTCTCACCTC+GGG | - | chr7_3:79455633-79455652 | Msa1127780:three_prime_UTR | 50.0% | |
| TCTCTCACCTCGGGATATCT+TGG | - | chr7_3:79455642-79455661 | Msa1127780:three_prime_UTR | 50.0% | |
| AGTGGGATCATGAGAGGTTG+AGG | + | chr7_3:79455727-79455746 | None:intergenic | 50.0% | |
| AGAGTGAGTGGGATCATGAG+AGG | + | chr7_3:79455733-79455752 | None:intergenic | 50.0% | |
| GCTCCATGAATGAGAGTGAG+TGG | + | chr7_3:79455745-79455764 | None:intergenic | 50.0% | |
| ! | GGAGCTGATTCAAAAGGAGC+AGG | - | chr7_3:79455760-79455779 | Msa1127780:three_prime_UTR | 50.0% |
| !! | TGTGTGTGCGCGCTTTGTTT+AGG | - | chr7_3:79456014-79456033 | Msa1127780:intron | 50.0% |
| TTTGCACCAGATCCAGATCC+GGG | + | chr7_3:79456178-79456197 | None:intergenic | 50.0% | |
| ! | CTTTTCTTCAGGGAGGAGGA+TGG | - | chr7_3:79456342-79456361 | Msa1127780:intron | 50.0% |
| CAGTGGAGACAGTCAAAACG+AGG | - | chr7_3:79456626-79456645 | Msa1127780:intron | 50.0% | |
| GGTGGGGAGAGGTAAAACTA+TGG | - | chr7_3:79456846-79456865 | Msa1127780:intron | 50.0% | |
| TGAAGCTGTGCAGCCTGAAA+GGG | + | chr7_3:79457166-79457185 | None:intergenic | 50.0% | |
| TTGAAGCTGTGCAGCCTGAA+AGG | + | chr7_3:79457167-79457186 | None:intergenic | 50.0% | |
| GGGAATGAAGAACGCCAACA+AGG | - | chr7_3:79457237-79457256 | Msa1127780:intron | 50.0% | |
| TAACCACCTGGACCCAACTT+CGG | - | chr7_3:79457771-79457790 | Msa1127780:intron | 50.0% | |
| GCTGCATTCAGCAGAAACAG+TGG | + | chr7_3:79457923-79457942 | None:intergenic | 50.0% | |
| TGCAGCTTATGATGCATGGC+AGG | - | chr7_3:79457937-79457956 | Msa1127780:CDS | 50.0% | |
| AATGCGGGGCTAGACTTTCT+TGG | + | chr7_3:79458135-79458154 | None:intergenic | 50.0% | |
| ATGAGGATCTGCTGAATGCG+GGG | + | chr7_3:79458149-79458168 | None:intergenic | 50.0% | |
| CATGAGGATCTGCTGAATGC+GGG | + | chr7_3:79458150-79458169 | None:intergenic | 50.0% | |
| CCATGAGGATCTGCTGAATG+CGG | + | chr7_3:79458151-79458170 | None:intergenic | 50.0% | |
| CAGCAGATCCTCATGGATCT+TGG | - | chr7_3:79458155-79458174 | Msa1127780:CDS | 50.0% | |
| CTCTCCCCTCCTTAACAACA+TGG | - | chr7_3:79458461-79458480 | Msa1127780:intron | 50.0% | |
| AGGCATAGAATGGGGTCCTT+GGG | + | chr7_3:79459115-79459134 | None:intergenic | 50.0% | |
| GACCCCATTCTATGCCTGAA+GGG | - | chr7_3:79459118-79459137 | Msa1127780:CDS | 50.0% | |
| CACCCTTCAGGCATAGAATG+GGG | + | chr7_3:79459123-79459142 | None:intergenic | 50.0% | |
| CCACCCTTCAGGCATAGAAT+GGG | + | chr7_3:79459124-79459143 | None:intergenic | 50.0% | |
| ACCACCCTTCAGGCATAGAA+TGG | + | chr7_3:79459125-79459144 | None:intergenic | 50.0% | |
| !! | AAAAGAAGGCACCACCCTTC+AGG | + | chr7_3:79459135-79459154 | None:intergenic | 50.0% |
| GGAACTTCTGGCCCGAATAT+TGG | + | chr7_3:79459593-79459612 | None:intergenic | 50.0% | |
| !! | AGTGGACTACTCGGAACTTC+TGG | + | chr7_3:79459605-79459624 | None:intergenic | 50.0% |
| ! | GGTGTTGGAAAGGAAAGCAG+TGG | + | chr7_3:79459623-79459642 | None:intergenic | 50.0% |
| ! | TCACCTACGTGGTGTTGGAA+AGG | + | chr7_3:79459633-79459652 | None:intergenic | 50.0% |
| CCAACACCACGTAGGTGATT+CGG | - | chr7_3:79459635-79459654 | Msa1127780:intron | 50.0% | |
| TTCTGTCCGAATCACCTACG+TGG | + | chr7_3:79459644-79459663 | None:intergenic | 50.0% | |
| !! | ATGGCATTGGGTTTGGTGTC+TGG | - | chr7_3:79459892-79459911 | Msa1127780:CDS | 50.0% |
| CGGGAATATAGCATGGAGGT+AGG | + | chr7_3:79460323-79460342 | None:intergenic | 50.0% | |
| AGAGCGGGAATATAGCATGG+AGG | + | chr7_3:79460327-79460346 | None:intergenic | 50.0% | |
| GTAGCCTGTAGGTGGTTGAT+TGG | - | chr7_3:79460601-79460620 | Msa1127780:CDS | 50.0% | |
| AGATACCCGTGCTACAGCAC+GGG | + | chr7_3:79455377-79455396 | None:intergenic | 55.0% | |
| GAGATACCCGTGCTACAGCA+CGG | + | chr7_3:79455378-79455397 | None:intergenic | 55.0% | |
| CCCTCACACTCTCCAATGTG+TGG | + | chr7_3:79455472-79455491 | None:intergenic | 55.0% | |
| ATGAGAGGTTGAGGCAGCAG+GGG | + | chr7_3:79455718-79455737 | None:intergenic | 55.0% | |
| CATGAGAGGTTGAGGCAGCA+GGG | + | chr7_3:79455719-79455738 | None:intergenic | 55.0% | |
| TCATGAGAGGTTGAGGCAGC+AGG | + | chr7_3:79455720-79455739 | None:intergenic | 55.0% | |
| CCTGGTTACCACTTCCATCC+CGG | - | chr7_3:79456157-79456176 | Msa1127780:intron | 55.0% | |
| TACCACTTCCATCCCGGATC+TGG | - | chr7_3:79456163-79456182 | Msa1127780:intron | 55.0% | |
| ATCCAGATCCGGGATGGAAG+TGG | + | chr7_3:79456168-79456187 | None:intergenic | 55.0% | |
| TTCCATCCCGGATCTGGATC+TGG | - | chr7_3:79456169-79456188 | Msa1127780:intron | 55.0% | |
| ! | TGTGATGGGGCGTCTTTCAG+TGG | - | chr7_3:79456609-79456628 | Msa1127780:intron | 55.0% |
| TATTACCTCACGCAGCCTGC+TGG | - | chr7_3:79456823-79456842 | Msa1127780:intron | 55.0% | |
| ATTACCTCACGCAGCCTGCT+GGG | - | chr7_3:79456824-79456843 | Msa1127780:intron | 55.0% | |
| GAAGCTGTGCAGCCTGAAAG+GGG | + | chr7_3:79457165-79457184 | None:intergenic | 55.0% | |
| TTATCTGGATGCTCTGCGGG+TGG | - | chr7_3:79457340-79457359 | Msa1127780:intron | 55.0% | |
| CAGGCAATGATGCAGGCTAG+AGG | + | chr7_3:79457489-79457508 | None:intergenic | 55.0% | |
| ! | TATCTGGGGGGCACACATTG+AGG | - | chr7_3:79457556-79457575 | Msa1127780:intron | 55.0% |
| TTACCGAAGTTGGGTCCAGG+TGG | + | chr7_3:79457777-79457796 | None:intergenic | 55.0% | |
| CCGCATTCAGCAGATCCTCA+TGG | - | chr7_3:79458148-79458167 | Msa1127780:CDS | 55.0% | |
| CAGCCAATTGCGATTGCCGT+TGG | - | chr7_3:79458757-79458776 | Msa1127780:intron | 55.0% | |
| CAGGCATAGAATGGGGTCCT+TGG | + | chr7_3:79459116-79459135 | None:intergenic | 55.0% | |
| GGACCCCATTCTATGCCTGA+AGG | - | chr7_3:79459117-79459136 | Msa1127780:CDS | 55.0% | |
| CCCATTCTATGCCTGAAGGG+TGG | - | chr7_3:79459121-79459140 | Msa1127780:CDS | 55.0% | |
| CCGAATCACCTACGTGGTGT+TGG | + | chr7_3:79459638-79459657 | None:intergenic | 55.0% | |
| CTGATGCTGTAGCCTGTAGG+TGG | - | chr7_3:79460593-79460612 | Msa1127780:CDS | 55.0% | |
| CCGGGATGGAAGTGGTAACC+AGG | + | chr7_3:79456160-79456179 | None:intergenic | 60.0% | |
| CACCAGATCCAGATCCGGGA+TGG | + | chr7_3:79456174-79456193 | None:intergenic | 60.0% | |
| TTACCTCACGCAGCCTGCTG+GGG | - | chr7_3:79456825-79456844 | Msa1127780:intron | 60.0% | |
| AGGTTGAGGCAGCAGGGGAG+AGG | + | chr7_3:79455713-79455732 | None:intergenic | 65.0% | |
| TTACCTCTCCCCACCCCAGC+AGG | + | chr7_3:79456841-79456860 | None:intergenic | 65.0% | |
| TGGATGCTCTGCGGGTGGTC+TGG | - | chr7_3:79457345-79457364 | Msa1127780:intron | 65.0% | |
| CTCACGCAGCCTGCTGGGGT+GGG | - | chr7_3:79456829-79456848 | Msa1127780:intron | 70.0% | |
| TCACGCAGCCTGCTGGGGTG+GGG | - | chr7_3:79456830-79456849 | Msa1127780:intron | 70.0% | |
| CCACCCCAGCAGGCTGCGTG+AGG | + | chr7_3:79456831-79456850 | None:intergenic | 75.0% | |
| CCTCACGCAGCCTGCTGGGG+TGG | - | chr7_3:79456828-79456847 | Msa1127780:intron | 75.0% | |
| CAGCCTGCTGGGGTGGGGAG+AGG | - | chr7_3:79456835-79456854 | Msa1127780:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 79455370 | 79460946 | 79455370 | ID=Msa1127780;Name=Msa1127780 |
| chr7_3 | mRNA | 79455370 | 79460946 | 79455370 | ID=Msa1127780-mRNA-1;Parent=Msa1127780;Name=Msa1127780-mRNA-1;_AED=0.21;_eAED=0.21;_QI=177|0.92|1|1|0.84|0.85|14|497|461 |
| chr7_3 | exon | 79455370 | 79455537 | 79455370 | ID=Msa1127780-mRNA-1:exon:22507;Parent=Msa1127780-mRNA-1 |
| chr7_3 | exon | 79455575 | 79456006 | 79455575 | ID=Msa1127780-mRNA-1:exon:22506;Parent=Msa1127780-mRNA-1 |
| chr7_3 | exon | 79457453 | 79457556 | 79457453 | ID=Msa1127780-mRNA-1:exon:22505;Parent=Msa1127780-mRNA-1 |
| chr7_3 | exon | 79457834 | 79457979 | 79457834 | ID=Msa1127780-mRNA-1:exon:22504;Parent=Msa1127780-mRNA-1 |
| chr7_3 | exon | 79458081 | 79458186 | 79458081 | ID=Msa1127780-mRNA-1:exon:22503;Parent=Msa1127780-mRNA-1 |
| chr7_3 | exon | 79458358 | 79458435 | 79458358 | ID=Msa1127780-mRNA-1:exon:22502;Parent=Msa1127780-mRNA-1 |
| chr7_3 | exon | 79458524 | 79458577 | 79458524 | ID=Msa1127780-mRNA-1:exon:22501;Parent=Msa1127780-mRNA-1 |
| chr7_3 | exon | 79458708 | 79458768 | 79458708 | ID=Msa1127780-mRNA-1:exon:22500;Parent=Msa1127780-mRNA-1 |
| chr7_3 | exon | 79458858 | 79458982 | 79458858 | ID=Msa1127780-mRNA-1:exon:22499;Parent=Msa1127780-mRNA-1 |
| chr7_3 | exon | 79459058 | 79459144 | 79459058 | ID=Msa1127780-mRNA-1:exon:22498;Parent=Msa1127780-mRNA-1 |
| chr7_3 | exon | 79459669 | 79459742 | 79459669 | ID=Msa1127780-mRNA-1:exon:22497;Parent=Msa1127780-mRNA-1 |
| chr7_3 | exon | 79459834 | 79459963 | 79459834 | ID=Msa1127780-mRNA-1:exon:22496;Parent=Msa1127780-mRNA-1 |
| chr7_3 | exon | 79460097 | 79460179 | 79460097 | ID=Msa1127780-mRNA-1:exon:22495;Parent=Msa1127780-mRNA-1 |
| chr7_3 | exon | 79460535 | 79460946 | 79460535 | ID=Msa1127780-mRNA-1:exon:22494;Parent=Msa1127780-mRNA-1 |
| chr7_3 | five_prime_UTR | 79460770 | 79460946 | 79460770 | ID=Msa1127780-mRNA-1:five_prime_utr;Parent=Msa1127780-mRNA-1 |
| chr7_3 | CDS | 79460535 | 79460769 | 79460535 | ID=Msa1127780-mRNA-1:cds;Parent=Msa1127780-mRNA-1 |
| chr7_3 | CDS | 79460097 | 79460179 | 79460097 | ID=Msa1127780-mRNA-1:cds;Parent=Msa1127780-mRNA-1 |
| chr7_3 | CDS | 79459834 | 79459963 | 79459834 | ID=Msa1127780-mRNA-1:cds;Parent=Msa1127780-mRNA-1 |
| chr7_3 | CDS | 79459669 | 79459742 | 79459669 | ID=Msa1127780-mRNA-1:cds;Parent=Msa1127780-mRNA-1 |
| chr7_3 | CDS | 79459058 | 79459144 | 79459058 | ID=Msa1127780-mRNA-1:cds;Parent=Msa1127780-mRNA-1 |
| chr7_3 | CDS | 79458858 | 79458982 | 79458858 | ID=Msa1127780-mRNA-1:cds;Parent=Msa1127780-mRNA-1 |
| chr7_3 | CDS | 79458708 | 79458768 | 79458708 | ID=Msa1127780-mRNA-1:cds;Parent=Msa1127780-mRNA-1 |
| chr7_3 | CDS | 79458524 | 79458577 | 79458524 | ID=Msa1127780-mRNA-1:cds;Parent=Msa1127780-mRNA-1 |
| chr7_3 | CDS | 79458358 | 79458435 | 79458358 | ID=Msa1127780-mRNA-1:cds;Parent=Msa1127780-mRNA-1 |
| chr7_3 | CDS | 79458081 | 79458186 | 79458081 | ID=Msa1127780-mRNA-1:cds;Parent=Msa1127780-mRNA-1 |
| chr7_3 | CDS | 79457834 | 79457979 | 79457834 | ID=Msa1127780-mRNA-1:cds;Parent=Msa1127780-mRNA-1 |
| chr7_3 | CDS | 79457453 | 79457556 | 79457453 | ID=Msa1127780-mRNA-1:cds;Parent=Msa1127780-mRNA-1 |
| chr7_3 | CDS | 79455904 | 79456006 | 79455904 | ID=Msa1127780-mRNA-1:cds;Parent=Msa1127780-mRNA-1 |
| chr7_3 | three_prime_UTR | 79455575 | 79455903 | 79455575 | ID=Msa1127780-mRNA-1:three_prime_utr;Parent=Msa1127780-mRNA-1 |
| chr7_3 | three_prime_UTR | 79455370 | 79455537 | 79455370 | ID=Msa1127780-mRNA-1:three_prime_utr;Parent=Msa1127780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
