AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0683200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683200 MtrunA17_Chr4g0029971 97.751 489 11 0 1 489 1 489 0.0 1000
Msa0683200 MtrunA17_Chr7g0263721 57.466 442 178 4 16 455 56 489 0.0 555
Msa0683200 MtrunA17_Chr4g0026421 32.456 342 180 10 104 434 30 331 5.05e-43 156
Msa0683200 MtrunA17_Chr1g0178741 31.761 318 183 7 119 430 93 382 1.99e-40 150
Msa0683200 MtrunA17_Chr3g0136021 32.087 321 174 11 123 434 129 414 3.66e-40 150
Msa0683200 MtrunA17_Chr2g0321341 30.275 327 196 9 119 443 36 332 3.48e-39 145
Msa0683200 MtrunA17_Chr1g0178721 29.223 373 221 10 86 450 38 375 5.21e-39 145
Msa0683200 MtrunA17_Chr2g0321351 31.437 334 189 11 122 449 47 346 4.20e-38 142
Msa0683200 MtrunA17_Chr1g0171181 44.444 135 72 2 119 250 36 170 4.78e-29 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683200 AT3G09690.1 60.310 451 170 3 9 457 57 500 0.0 586
Msa0683200 AT3G09690.2 60.310 451 170 3 9 457 57 500 0.0 586
Msa0683200 AT5G02970.1 56.399 461 192 3 13 471 58 511 0.0 558
Msa0683200 AT5G22460.2 28.531 354 210 8 88 430 1 322 1.36e-40 149
Msa0683200 AT5G22460.3 28.531 354 210 8 88 430 1 322 1.36e-40 149
Msa0683200 AT5G22460.1 28.531 354 210 8 88 430 1 322 1.36e-40 149
Msa0683200 AT3G44510.2 32.424 330 184 12 124 444 8 307 3.77e-39 145
Msa0683200 AT3G54240.1 27.893 337 212 6 119 452 40 348 6.72e-39 145
Msa0683200 AT1G74280.1 29.358 327 179 6 119 430 56 345 7.10e-38 142
Msa0683200 AT2G36290.2 30.636 346 206 9 93 430 8 327 5.23e-37 139
Msa0683200 AT2G36290.1 30.460 348 204 10 93 430 22 341 8.03e-37 139
Msa0683200 AT1G08310.1 30.145 345 176 10 119 444 5 303 8.18e-36 135
Msa0683200 AT3G44510.3 43.094 181 85 6 124 296 8 178 1.34e-35 132
Msa0683200 AT1G08310.2 29.971 347 177 10 119 444 5 306 2.51e-35 134
Msa0683200 AT1G74290.1 29.595 321 187 7 119 430 56 346 1.94e-33 130
Msa0683200 AT1G74300.1 29.012 324 184 6 119 430 39 328 3.06e-33 129
Msa0683200 AT3G03240.1 28.481 316 185 9 122 430 35 316 4.80e-32 125
Msa0683200 AT3G48410.1 27.249 389 211 12 82 448 33 371 3.71e-30 121
Msa0683200 AT1G08310.3 47.368 133 68 2 119 250 5 136 5.82e-30 117
Msa0683200 AT3G48410.2 27.688 372 199 11 82 431 75 398 6.76e-30 121
Msa0683200 AT3G03230.1 27.097 310 196 6 122 430 35 315 1.96e-29 118
Msa0683200 AT1G74300.2 27.376 263 147 5 178 430 1 229 2.32e-22 96.7

Find 130 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCATTGTTAAGAAATT+TGG 0.136021 4_4:+45617996 Msa0683200:CDS
ACAAAAGGAATGTGCTTAAT+TGG 0.161569 4_4:+45620894 Msa0683200:CDS
TATCAGCGAAGTTTCTTATC+AGG 0.205500 4_4:+45620380 Msa0683200:CDS
CTCTTGGTGTTGACAAGTTT+TGG 0.207857 4_4:+45619639 Msa0683200:CDS
CAAGTTCAACGTTGGCTTCT+AGG 0.207888 4_4:-45621970 None:intergenic
ATCCAATCTATGAGGATTTC+TGG 0.211014 4_4:+45620750 Msa0683200:CDS
TTGGAGTAGAAATTTGAAAT+AGG 0.213651 4_4:-45617668 None:intergenic
TGTGGAGGAAGCTGCTTTGC+AGG 0.230425 4_4:+45620820 Msa0683200:CDS
TTCCTTTCCTCTCGGCTTGC+AGG 0.230918 4_4:+45619366 Msa0683200:CDS
TGCTTTGCAGGTCTCGAATT+GGG 0.231694 4_4:+45620832 Msa0683200:CDS
CACTGAAACTCAGGAGTATA+CGG 0.248631 4_4:+45620931 Msa0683200:CDS
GAAAGAGACAAGTGTAGATT+TGG 0.253593 4_4:-45617774 None:intergenic
CGAAGCTTTCCTAGACTTCT+TGG 0.254206 4_4:+45620350 Msa0683200:CDS
ACGTTGGCTTCTAGGGTAAT+TGG 0.261598 4_4:-45621962 None:intergenic
CTAACTGTAGAATTCTTAAA+AGG 0.264307 4_4:+45617933 Msa0683200:CDS
GTTAAGAAATTTGGAAAGAT+TGG 0.278897 4_4:+45618005 Msa0683200:CDS
ACTTATGATCTGCCTGGTTT+TGG 0.280877 4_4:+45619548 Msa0683200:CDS
CATATAATTTGTGATGATAT+TGG 0.288185 4_4:-45622089 None:intergenic
TGAGGCTGAGAGGGCCTTGC+GGG 0.293815 4_4:-45621919 None:intergenic
TCCTCATCCCAAACGAAATC+TGG 0.315816 4_4:+45619580 Msa0683200:CDS
TTAATACCTGCAAGTCTATC+AGG 0.327430 4_4:-45619716 None:intergenic
TGACGATTCCAGATTTCGTT+TGG 0.334193 4_4:-45619588 None:intergenic
TCTGCAACTTGAGGTCTAAA+AGG 0.346212 4_4:-45620862 None:intergenic
CTGCTTTGCAGGTCTCGAAT+TGG 0.353135 4_4:+45620831 Msa0683200:CDS
CGTTTGAAATTAGGAATTCC+TGG 0.355664 4_4:+45619482 Msa0683200:intron
TACATACCTGATAGACTTGC+AGG 0.361619 4_4:+45619710 Msa0683200:CDS
TGCTACCCGCATTATGCTTC+CGG 0.364526 4_4:+45619266 Msa0683200:CDS
GGGACAAATAAATTAAGAAA+TGG 0.367689 4_4:-45617647 None:intergenic
TGCCAGAAATCCTCATAGAT+TGG 0.373531 4_4:-45620752 None:intergenic
TGAAGTGGGTCTTTATCTTC+TGG 0.394412 4_4:-45618092 None:intergenic
TTTGTCATCAAAGGATCATA+TGG 0.395653 4_4:-45620263 None:intergenic
CAGGAGTATACGGGATTTCT+CGG 0.400274 4_4:+45620941 Msa0683200:CDS
GACGATTCCAGATTTCGTTT+GGG 0.408411 4_4:-45619587 None:intergenic
CTCATACTTTCCTTTCCTCT+CGG 0.410239 4_4:+45619358 Msa0683200:CDS
ATGATATTGGCCAGAACAAC+GGG 0.413247 4_4:-45622076 None:intergenic
GTTTCTTTACTTGCTTTCTC+AGG 0.414312 4_4:+45618137 Msa0683200:CDS
CAAGTGGAAGCAAGCATGCT+TGG 0.416127 4_4:+45619675 Msa0683200:CDS
GACGAAGAACCTGGAACAAA+TGG 0.419319 4_4:+45620294 Msa0683200:CDS
GGGATGTGGAAGAATCAATT+AGG 0.420004 4_4:+45620777 Msa0683200:CDS
GAATGTGCTTAATTGGCTTA+AGG 0.424123 4_4:+45620901 Msa0683200:CDS
TGGAGTAGAAATTTGAAATA+GGG 0.424302 4_4:-45617667 None:intergenic
ATACAAGGAGCAAGGTGTTT+CGG 0.426151 4_4:+45619305 Msa0683200:CDS
CTCTCTTCGTTTGTCATCAA+AGG 0.426304 4_4:-45620272 None:intergenic
TTAAGAAATTTGGAAAGATT+GGG 0.427485 4_4:+45618006 Msa0683200:CDS
AAAAGTATATATATGTGAAA+TGG 0.431214 4_4:-45621853 None:intergenic
ACAAGTGTAGATTTGGGTTG+AGG 0.433658 4_4:-45617767 None:intergenic
TGTGTAAGAGAGTTCATGAT+TGG 0.436128 4_4:+45617900 Msa0683200:CDS
GATTCACTGATGGAAGAGTT+TGG 0.439690 4_4:+45619512 Msa0683200:CDS
AGGTGGCTGTCTTTATCTCT+TGG 0.445446 4_4:+45620422 Msa0683200:CDS
TAGTCTGATATGACAACAAT+TGG 0.449971 4_4:+45622209 Msa0683200:three_prime_UTR
AAAGAGACAAGTGTAGATTT+GGG 0.452312 4_4:-45617773 None:intergenic
ACGAAGAGAGACGAAGAACC+TGG 0.455949 4_4:+45620285 Msa0683200:CDS
AAGTTCAACGTTGGCTTCTA+GGG 0.458277 4_4:-45621969 None:intergenic
GGACAAATAAATTAAGAAAT+GGG 0.458323 4_4:-45617646 None:intergenic
CTCACTTGCCATATGTGTAT+TGG 0.459865 4_4:-45620965 None:intergenic
TCCAGATTTCGTTTGGGATG+AGG 0.462321 4_4:-45619581 None:intergenic
AAGTGGAAGCAAGCATGCTT+GGG 0.466214 4_4:+45619676 Msa0683200:CDS
TATGTGAAATGGCCTTCATA+TGG 0.467837 4_4:-45621842 None:intergenic
GGATCATATGGGTTCACCAT+GGG 0.473212 4_4:-45620251 None:intergenic
TTCTCGGTCCAATACACATA+TGG 0.474933 4_4:+45620957 Msa0683200:CDS
GGAAGCATGGTCAGATTGAC+AGG 0.481984 4_4:+45620402 Msa0683200:CDS
TTGATTACTTATGATCTGCC+TGG 0.485276 4_4:+45619542 Msa0683200:CDS
GTGTAAGAGAGTTCATGATT+GGG 0.487800 4_4:+45617901 Msa0683200:CDS
ATAAAGACCCACTTCATGCT+TGG 0.491569 4_4:+45618099 Msa0683200:CDS
TTTGTGCATCGCGTACTACC+TGG 0.493610 4_4:+45621800 Msa0683200:CDS
AGTTTGTGTACTGCAGCTCC+AGG 0.498358 4_4:-45621818 None:intergenic
TGCAGAAACGAAAATACAAA+AGG 0.502548 4_4:+45620879 Msa0683200:CDS
TGGAAGATACATGGCATACA+AGG 0.504189 4_4:+45619290 Msa0683200:CDS
GCACAAAATCAGTCATTGAC+GGG 0.504891 4_4:-45621784 None:intergenic
CTATGAGGATTTCTGGCAAA+GGG 0.505065 4_4:+45620757 Msa0683200:CDS
GTCTTTATCTCTTGGAAAGA+GGG 0.506713 4_4:+45620430 Msa0683200:CDS
GGATTTCTGGCAAAGGGATG+TGG 0.507209 4_4:+45620763 Msa0683200:CDS
CGAGAGGAAAGGAAAGTATG+AGG 0.512168 4_4:-45619357 None:intergenic
AAAATACTTGCTTCTCAAGT+GGG 0.518790 4_4:-45619230 None:intergenic
TGTCTTTATCTCTTGGAAAG+AGG 0.519291 4_4:+45620429 Msa0683200:CDS
GCTTTGCAGGTCTCGAATTG+GGG 0.522101 4_4:+45620833 Msa0683200:CDS
AAAGCAGCTTCCTCCACAAA+GGG 0.525187 4_4:-45620815 None:intergenic
TCTTTCCTATGCTGCTCCAT+CGG 0.526421 4_4:-45622145 None:intergenic
TTGTCATCAAAGGATCATAT+GGG 0.529008 4_4:-45620262 None:intergenic
TAGAAGAAACCAAGAAGTCT+AGG 0.529335 4_4:-45620359 None:intergenic
TGTAAGAGAGTTCATGATTG+GGG 0.530248 4_4:+45617902 Msa0683200:CDS
ATGTGAAATGGCCTTCATAT+GGG 0.532028 4_4:-45621841 None:intergenic
ATCAGCGAAGTTTCTTATCA+GGG 0.532446 4_4:+45620381 Msa0683200:CDS
TATGCCATGTATCTTCCATC+CGG 0.539640 4_4:-45619285 None:intergenic
ATAATGCGGGTAGCACTAGC+AGG 0.539782 4_4:-45619258 None:intergenic
CATCTCCGATGGAGCAGCAT+AGG 0.540320 4_4:+45622140 Msa0683200:three_prime_UTR
AAAATTGAGTGGTTGTGTGT+TGG 0.549273 4_4:-45617687 None:intergenic
AAGAAATGCTGAGGCTGAGA+GGG 0.556389 4_4:-45621928 None:intergenic
CTGAGGCTGAGAGGGCCTTG+CGG 0.559279 4_4:-45621920 None:intergenic
TTGCTGTTCAAGTTCAACGT+TGG 0.561905 4_4:-45621978 None:intergenic
TAGTTGAGCTTCATCTCCGA+TGG 0.565207 4_4:+45622129 Msa0683200:three_prime_UTR
TGGATCATTGGTTACTCAAG+TGG 0.565359 4_4:+45619659 Msa0683200:CDS
TGGTGTTAAAGATTCACTGA+TGG 0.566190 4_4:+45619502 Msa0683200:CDS
ACTGAAACTCAGGAGTATAC+GGG 0.566332 4_4:+45620932 Msa0683200:CDS
ATCAGTGAATCTTTAACACC+AGG 0.570063 4_4:-45619500 None:intergenic
CAAAGCAGCTTCCTCCACAA+AGG 0.573514 4_4:-45620816 None:intergenic
GATGGAAGATCCAATCTATG+AGG 0.573832 4_4:+45620742 Msa0683200:CDS
TGCACAAAATCAGTCATTGA+CGG 0.575384 4_4:-45621785 None:intergenic
ATGACAAACCAAGCATGAAG+TGG 0.579236 4_4:-45618107 None:intergenic
TCCATCCGGAAGCATAATGC+GGG 0.582006 4_4:-45619271 None:intergenic
GTACACAAACTCCCATATGA+AGG 0.587384 4_4:+45621830 Msa0683200:CDS
GGATCGCTCTCACCAAAACC+AGG 0.589789 4_4:-45619560 None:intergenic
AGGAAATGCGAAACCCTTTG+TGG 0.591906 4_4:+45620802 Msa0683200:CDS
TTGTTCAACAATTTCTCACA+AGG 0.592322 4_4:-45618044 None:intergenic
GAGGCTGAGAGGGCCTTGCG+GGG 0.592778 4_4:-45621918 None:intergenic
ACCCGCATTATGCTTCCGGA+TGG 0.593805 4_4:+45619270 Msa0683200:CDS
TTCCATCCGGAAGCATAATG+CGG 0.604964 4_4:-45619272 None:intergenic
CACAAAATCAGTCATTGACG+GGG 0.606548 4_4:-45621783 None:intergenic
AACCTGCAAGCCGAGAGGAA+AGG 0.606711 4_4:-45619368 None:intergenic
GATCATATGGGTTCACCATG+GGG 0.606822 4_4:-45620250 None:intergenic
GTGGAAGAATCAATTAGGCA+AGG 0.615184 4_4:+45620782 Msa0683200:CDS
AGTTTCTTATCAGGGAAGCA+TGG 0.625370 4_4:+45620389 Msa0683200:CDS
ACAGGGAATGGATGACAAAG+TGG 0.625940 4_4:+45621757 Msa0683200:intron
TCTATGAGGATTTCTGGCAA+AGG 0.628041 4_4:+45620756 Msa0683200:CDS
GCTTCCGGATGGAAGATACA+TGG 0.631513 4_4:+45619281 Msa0683200:CDS
TGACAAACCAAGCATGAAGT+GGG 0.631660 4_4:-45618106 None:intergenic
AGGATCATATGGGTTCACCA+TGG 0.635002 4_4:-45620252 None:intergenic
CAAGAAGTAGTAGCAAGTAG+TGG 0.638951 4_4:+45621998 Msa0683200:CDS
TACATGGCATACAAGGAGCA+AGG 0.639291 4_4:+45619297 Msa0683200:CDS
GTGTAGTAAATATCTGTCTG+TGG 0.641522 4_4:-45621886 None:intergenic
AAAGAAATGCTGAGGCTGAG+AGG 0.645314 4_4:-45621929 None:intergenic
CTACTTCTAAAGAAATGCTG+AGG 0.649194 4_4:-45621937 None:intergenic
GATGATATTGGCCAGAACAA+CGG 0.649642 4_4:-45622077 None:intergenic
AAATACTTGCTTCTCAAGTG+GGG 0.651959 4_4:-45619229 None:intergenic
ATCATATGGGTTCACCATGG+GGG 0.655135 4_4:-45620249 None:intergenic
AAATGCGAAACCCTTTGTGG+AGG 0.661010 4_4:+45620805 Msa0683200:CDS
TTGTGTGTACTTCTAATCAG+TGG 0.680829 4_4:-45622029 None:intergenic
AGCATGGTCAGATTGACAGG+TGG 0.689331 4_4:+45620405 Msa0683200:CDS
CAAACAACCTGCAAGCCGAG+AGG 0.700337 4_4:-45619373 None:intergenic
ACAAAATCAGTCATTGACGG+GGG 0.748115 4_4:-45621782 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATCATTTTTTAAATGAAA+TGG - chr4_4:45622255-45622274 None:intergenic 10.0%
!!! AAAGAAAACAAAAATATTTT+TGG - chr4_4:45622281-45622300 None:intergenic 10.0%
!!! TACTTCATTAAATTTAGTTT+AGG + chr4_4:45619882-45619901 Msa0683200:intron 15.0%
!!! GTAAAATATTTAAAACTCTT+GGG - chr4_4:45620690-45620709 None:intergenic 15.0%
!!! TGTAAAATATTTAAAACTCT+TGG - chr4_4:45620691-45620710 None:intergenic 15.0%
!!! ATATTTTCATATTTGCAATT+TGG - chr4_4:45621068-45621087 None:intergenic 15.0%
!!! ATGAAAATATTAGCTTTTAT+AGG + chr4_4:45621078-45621097 Msa0683200:intron 15.0%
!!! TGAAAATATTAGCTTTTATA+GGG + chr4_4:45621079-45621098 Msa0683200:intron 15.0%
!!! TCTAAAATGAGTTTAAAAAT+TGG - chr4_4:45621205-45621224 None:intergenic 15.0%
!!! AAAAGTATATATATGTGAAA+TGG - chr4_4:45621856-45621875 None:intergenic 15.0%
!!! TTTTTGTTTTGAAAATTGAG+TGG - chr4_4:45617701-45617720 None:intergenic 20.0%
!!! AGTTGTGATTTTTATTTGAT+GGG - chr4_4:45617745-45617764 None:intergenic 20.0%
!!! AAGTTGTGATTTTTATTTGA+TGG - chr4_4:45617746-45617765 None:intergenic 20.0%
!! TCTTTCATTGTTAAGAAATT+TGG + chr4_4:45617996-45618015 Msa0683200:CDS 20.0%
!! TTAAGAAATTTGGAAAGATT+GGG + chr4_4:45618006-45618025 Msa0683200:CDS 20.0%
!!! TTTTACTTTTTTTGAAGTTG+TGG + chr4_4:45618228-45618247 Msa0683200:intron 20.0%
!!! TATGTATGGTTTTAAATTGT+GGG + chr4_4:45618327-45618346 Msa0683200:intron 20.0%
!!! TAATTTAAAACTATGAATGC+AGG + chr4_4:45618900-45618919 Msa0683200:intron 20.0%
!!! AATTCTTGTATTGTGTTTTT+AGG + chr4_4:45619091-45619110 Msa0683200:intron 20.0%
!!! ACTTTTAACTTGACAAAATT+TGG + chr4_4:45619790-45619809 Msa0683200:intron 20.0%
!!! TCTATTTCTCAATTTATTAC+CGG + chr4_4:45620093-45620112 Msa0683200:intron 20.0%
!!! AAATTCTTTTAAGTTCTCAT+AGG + chr4_4:45621298-45621317 Msa0683200:intron 20.0%
!! AGTTAAATCAATAAACAAGA+CGG + chr4_4:45621594-45621613 Msa0683200:intron 20.0%
!!! CATATAATTTGTGATGATAT+TGG - chr4_4:45622092-45622111 None:intergenic 20.0%
!! TGGAGTAGAAATTTGAAATA+GGG - chr4_4:45617670-45617689 None:intergenic 25.0%
!! TTGGAGTAGAAATTTGAAAT+AGG - chr4_4:45617671-45617690 None:intergenic 25.0%
! CTAACTGTAGAATTCTTAAA+AGG + chr4_4:45617933-45617952 Msa0683200:CDS 25.0%
! GTTAAGAAATTTGGAAAGAT+TGG + chr4_4:45618005-45618024 Msa0683200:CDS 25.0%
!!! TGATGATGAGTTTTTGTATT+AGG + chr4_4:45618292-45618311 Msa0683200:intron 25.0%
!! TGAGTTTTTGTATTAGGAAT+AGG + chr4_4:45618298-45618317 Msa0683200:intron 25.0%
!!! GTATGTATGGTTTTAAATTG+TGG + chr4_4:45618326-45618345 Msa0683200:intron 25.0%
! ATCTTGATATTGTCACAAAA+TGG + chr4_4:45618366-45618385 Msa0683200:intron 25.0%
! TCTTGATATTGTCACAAAAT+GGG + chr4_4:45618367-45618386 Msa0683200:intron 25.0%
!! TAGTTTAGAACTAAGAATGT+AGG + chr4_4:45618405-45618424 Msa0683200:intron 25.0%
!!! CTGCAATATAAATTTTTTGG+AGG - chr4_4:45618858-45618877 None:intergenic 25.0%
!!! TGGCTGCAATATAAATTTTT+TGG - chr4_4:45618861-45618880 None:intergenic 25.0%
! GCATAAAACATTGACAATTA+GGG - chr4_4:45619056-45619075 None:intergenic 25.0%
! AGCATAAAACATTGACAATT+AGG - chr4_4:45619057-45619076 None:intergenic 25.0%
!! TAATTGTCAATGTTTTATGC+TGG + chr4_4:45619056-45619075 Msa0683200:intron 25.0%
!! TTGAATTTGCGTTTGAAATT+AGG + chr4_4:45619473-45619492 Msa0683200:intron 25.0%
! AAATCTGTGTTTACAAAAGT+TGG + chr4_4:45620645-45620664 Msa0683200:intron 25.0%
! TTGTAAAAAAGTAACTCTCA+AGG - chr4_4:45621180-45621199 None:intergenic 25.0%
! TTTCTTGACTACAAATAATC+TGG + chr4_4:45621520-45621539 Msa0683200:intron 25.0%
! TACATACAAACAAACATAGA+GGG - chr4_4:45621676-45621695 None:intergenic 25.0%
! ATACATACAAACAAACATAG+AGG - chr4_4:45621677-45621696 None:intergenic 25.0%
!! TCTAATTCAATTTGCTTTCT+GGG + chr4_4:45621699-45621718 Msa0683200:intron 25.0%
!! CAGATATTTACTACACTTTT+TGG + chr4_4:45621893-45621912 Msa0683200:CDS 25.0%
!! GTGATTTTTATTTGATGGGT+TGG - chr4_4:45617741-45617760 None:intergenic 30.0%
AAAGAGACAAGTGTAGATTT+GGG - chr4_4:45617776-45617795 None:intergenic 30.0%
TTGTTCAACAATTTCTCACA+AGG - chr4_4:45618047-45618066 None:intergenic 30.0%
!!! TGACCCATGTTTCTTTTTTT+TGG + chr4_4:45618170-45618189 Msa0683200:intron 30.0%
!!! GACCCATGTTTCTTTTTTTT+GGG + chr4_4:45618171-45618190 Msa0683200:intron 30.0%
CACCCAAAAAAAAGAAACAT+GGG - chr4_4:45618176-45618195 None:intergenic 30.0%
ACACCCAAAAAAAAGAAACA+TGG - chr4_4:45618177-45618196 None:intergenic 30.0%
GGAATAGGTTAATGTATGTA+TGG + chr4_4:45618313-45618332 Msa0683200:intron 30.0%
CTTGATATTGTCACAAAATG+GGG + chr4_4:45618368-45618387 Msa0683200:intron 30.0%
ATATTATAGTTGAACCCACT+TGG + chr4_4:45618552-45618571 Msa0683200:intron 30.0%
TATTAGGAATAGGTCAATGT+AGG + chr4_4:45618732-45618751 Msa0683200:intron 30.0%
!!! TGAATGCAGGTTTTAAATTG+AGG + chr4_4:45618913-45618932 Msa0683200:intron 30.0%
TTGTTGAGACATTATGAGTA+GGG + chr4_4:45618997-45619016 Msa0683200:intron 30.0%
ACAATTAGGGTTTCAGAAAA+TGG - chr4_4:45619043-45619062 None:intergenic 30.0%
!!! TCTTGTATTGTGTTTTTAGG+TGG + chr4_4:45619094-45619113 Msa0683200:intron 30.0%
AAAATACTTGCTTCTCAAGT+GGG - chr4_4:45619233-45619252 None:intergenic 30.0%
AAAAATACTTGCTTCTCAAG+TGG - chr4_4:45619234-45619253 None:intergenic 30.0%
CATGATAGTTGTCATTCAAA+AGG - chr4_4:45619846-45619865 None:intergenic 30.0%
! ACTTGTTTAGAGTGAGTTAA+CGG + chr4_4:45619942-45619961 Msa0683200:intron 30.0%
GATGTTGTGTATTAACTTTC+AGG + chr4_4:45620212-45620231 Msa0683200:intron 30.0%
TTGTCATCAAAGGATCATAT+GGG - chr4_4:45620265-45620284 None:intergenic 30.0%
TTTGTCATCAAAGGATCATA+TGG - chr4_4:45620266-45620285 None:intergenic 30.0%
GACAAAAAAAGAGATAAGCA+AGG - chr4_4:45620464-45620483 None:intergenic 30.0%
ATGTACATAGATAGAAATGC+AGG - chr4_4:45620522-45620541 None:intergenic 30.0%
TGGATGCTGATAAGAATTTA+TGG + chr4_4:45620571-45620590 Msa0683200:intron 30.0%
TGCAGAAACGAAAATACAAA+AGG + chr4_4:45620879-45620898 Msa0683200:CDS 30.0%
ACAAAAGGAATGTGCTTAAT+TGG + chr4_4:45620894-45620913 Msa0683200:CDS 30.0%
TAAGAAGAGAGAAATATGAC+AGG - chr4_4:45621228-45621247 None:intergenic 30.0%
TTTAACCGTCCAATCTTAAT+AGG - chr4_4:45621407-45621426 None:intergenic 30.0%
TAAGCTTGGTAAATCAGATT+TGG - chr4_4:45621459-45621478 None:intergenic 30.0%
TTTACCAAGCTTAAATCAGA+CGG + chr4_4:45621466-45621485 Msa0683200:intron 30.0%
! CTCTAATTCAATTTGCTTTC+TGG + chr4_4:45621698-45621717 Msa0683200:intron 30.0%
TAGTCTGATATGACAACAAT+TGG + chr4_4:45622209-45622228 Msa0683200:three_prime_UTR 30.0%
AAAATTGAGTGGTTGTGTGT+TGG - chr4_4:45617690-45617709 None:intergenic 35.0%
GAAAGAGACAAGTGTAGATT+TGG - chr4_4:45617777-45617796 None:intergenic 35.0%
TGTGTAAGAGAGTTCATGAT+TGG + chr4_4:45617900-45617919 Msa0683200:CDS 35.0%
GTGTAAGAGAGTTCATGATT+GGG + chr4_4:45617901-45617920 Msa0683200:CDS 35.0%
TGTAAGAGAGTTCATGATTG+GGG + chr4_4:45617902-45617921 Msa0683200:CDS 35.0%
GTTTCTTTACTTGCTTTCTC+AGG + chr4_4:45618137-45618156 Msa0683200:CDS 35.0%
! GTGGCATTGAAGTTAAACAT+GGG - chr4_4:45618457-45618476 None:intergenic 35.0%
! TGTGGCATTGAAGTTAAACA+TGG - chr4_4:45618458-45618477 None:intergenic 35.0%
!!! ATGCCACATGTTTCCTTTTT+TGG + chr4_4:45618470-45618489 Msa0683200:intron 35.0%
!!! TGCCACATGTTTCCTTTTTT+GGG + chr4_4:45618471-45618490 Msa0683200:intron 35.0%
ATTCAAAAACCCCCCAAAAA+AGG - chr4_4:45618486-45618505 None:intergenic 35.0%
AATACAATCCCTCAAAACCA+GGG - chr4_4:45618716-45618735 None:intergenic 35.0%
TAATACAATCCCTCAAAACC+AGG - chr4_4:45618717-45618736 None:intergenic 35.0%
!!! TGGTTTTGAGGGATTGTATT+AGG + chr4_4:45618716-45618735 Msa0683200:intron 35.0%
TGAGGGATTGTATTAGGAAT+AGG + chr4_4:45618722-45618741 Msa0683200:intron 35.0%
CTGCAAATTAGAGCAAAATG+TGG + chr4_4:45618790-45618809 Msa0683200:intron 35.0%
GAGCAAAATGTGGATAAATG+AGG + chr4_4:45618800-45618819 Msa0683200:intron 35.0%
GTTGTTGAGACATTATGAGT+AGG + chr4_4:45618996-45619015 Msa0683200:intron 35.0%
AATACCTGGTTGACATGATT+TGG + chr4_4:45619158-45619177 Msa0683200:intron 35.0%
AAATACTTGCTTCTCAAGTG+GGG - chr4_4:45619232-45619251 None:intergenic 35.0%
TCAACAATGCCTCAAACTAA+GGG - chr4_4:45619442-45619461 None:intergenic 35.0%
TTCAACAATGCCTCAAACTA+AGG - chr4_4:45619443-45619462 None:intergenic 35.0%
! CGTTTGAAATTAGGAATTCC+TGG + chr4_4:45619482-45619501 Msa0683200:intron 35.0%
ATCAGTGAATCTTTAACACC+AGG - chr4_4:45619503-45619522 None:intergenic 35.0%
! TGGTGTTAAAGATTCACTGA+TGG + chr4_4:45619502-45619521 Msa0683200:CDS 35.0%
TTGATTACTTATGATCTGCC+TGG + chr4_4:45619542-45619561 Msa0683200:CDS 35.0%
!!! GTTGACAAGTTTTGGATCAT+TGG + chr4_4:45619647-45619666 Msa0683200:CDS 35.0%
TTAATACCTGCAAGTCTATC+AGG - chr4_4:45619719-45619738 None:intergenic 35.0%
TTGTGTCACATCAATAGAAC+AGG + chr4_4:45619996-45620015 Msa0683200:intron 35.0%
TTTCAGTGAGAATAAGTGTC+TGG + chr4_4:45620022-45620041 Msa0683200:intron 35.0%
CAGATCACTTATATGCTGTT+TGG - chr4_4:45620189-45620208 None:intergenic 35.0%
TAGAAGAAACCAAGAAGTCT+AGG - chr4_4:45620362-45620381 None:intergenic 35.0%
TATCAGCGAAGTTTCTTATC+AGG + chr4_4:45620380-45620399 Msa0683200:CDS 35.0%
ATCAGCGAAGTTTCTTATCA+GGG + chr4_4:45620381-45620400 Msa0683200:CDS 35.0%
TGTCTTTATCTCTTGGAAAG+AGG + chr4_4:45620429-45620448 Msa0683200:CDS 35.0%
GTCTTTATCTCTTGGAAAGA+GGG + chr4_4:45620430-45620449 Msa0683200:CDS 35.0%
TTAGTCGACATGTCCATATA+TGG + chr4_4:45620486-45620505 Msa0683200:intron 35.0%
AGGATGGTATAAGCCATATA+TGG - chr4_4:45620502-45620521 None:intergenic 35.0%
ACATAGATAGAAATGCAGGA+TGG - chr4_4:45620518-45620537 None:intergenic 35.0%
TATCAGCATCCATCTAACTA+GGG - chr4_4:45620563-45620582 None:intergenic 35.0%
TTATCAGCATCCATCTAACT+AGG - chr4_4:45620564-45620583 None:intergenic 35.0%
AATTACAGAACCCAACTCAA+TGG + chr4_4:45620599-45620618 Msa0683200:intron 35.0%
ATTAGCTGAACCATTGAGTT+GGG - chr4_4:45620612-45620631 None:intergenic 35.0%
AATTAGCTGAACCATTGAGT+TGG - chr4_4:45620613-45620632 None:intergenic 35.0%
! TTTACAAAAGTTGGTTCCGA+GGG + chr4_4:45620654-45620673 Msa0683200:intron 35.0%
ATCCAATCTATGAGGATTTC+TGG + chr4_4:45620750-45620769 Msa0683200:CDS 35.0%
! ATTTTCGTTTCTGCAACTTG+AGG - chr4_4:45620874-45620893 None:intergenic 35.0%
! GAATGTGCTTAATTGGCTTA+AGG + chr4_4:45620901-45620920 Msa0683200:CDS 35.0%
! AAAGAATTTTACACCGCTGA+GGG - chr4_4:45621287-45621306 None:intergenic 35.0%
! AAAAGAATTTTACACCGCTG+AGG - chr4_4:45621288-45621307 None:intergenic 35.0%
ACAGTCCTATTAAGATTGGA+CGG + chr4_4:45621399-45621418 Msa0683200:intron 35.0%
ATTGCAGTACAATTGTTGAC+AGG + chr4_4:45621739-45621758 Msa0683200:intron 35.0%
TTGCAGTACAATTGTTGACA+GGG + chr4_4:45621740-45621759 Msa0683200:intron 35.0%
TGCACAAAATCAGTCATTGA+CGG - chr4_4:45621788-45621807 None:intergenic 35.0%
ATGTGAAATGGCCTTCATAT+GGG - chr4_4:45621844-45621863 None:intergenic 35.0%
TATGTGAAATGGCCTTCATA+TGG - chr4_4:45621845-45621864 None:intergenic 35.0%
GTGTAGTAAATATCTGTCTG+TGG - chr4_4:45621889-45621908 None:intergenic 35.0%
! CTACTTCTAAAGAAATGCTG+AGG - chr4_4:45621940-45621959 None:intergenic 35.0%
TTGTGTGTACTTCTAATCAG+TGG - chr4_4:45622032-45622051 None:intergenic 35.0%
!! ATTTGTTTTTCCCGTTGTTC+TGG + chr4_4:45622066-45622085 Msa0683200:three_prime_UTR 35.0%
AGTTCAATAGCCCAAAAACA+GGG - chr4_4:45622190-45622209 None:intergenic 35.0%
TAGTTCAATAGCCCAAAAAC+AGG - chr4_4:45622191-45622210 None:intergenic 35.0%
!! ACAAGTGTAGATTTGGGTTG+AGG - chr4_4:45617770-45617789 None:intergenic 40.0%
TGAAGTGGGTCTTTATCTTC+TGG - chr4_4:45618095-45618114 None:intergenic 40.0%
ATAAAGACCCACTTCATGCT+TGG + chr4_4:45618099-45618118 Msa0683200:CDS 40.0%
TGACAAACCAAGCATGAAGT+GGG - chr4_4:45618109-45618128 None:intergenic 40.0%
ATGACAAACCAAGCATGAAG+TGG - chr4_4:45618110-45618129 None:intergenic 40.0%
!!! GCCACATGTTTCCTTTTTTG+GGG + chr4_4:45618472-45618491 Msa0683200:intron 40.0%
!!! CCACATGTTTCCTTTTTTGG+GGG + chr4_4:45618473-45618492 Msa0683200:intron 40.0%
!!! CACATGTTTCCTTTTTTGGG+GGG + chr4_4:45618474-45618493 Msa0683200:intron 40.0%
ATAGTTGAACCCACTTGGAT+TGG + chr4_4:45618557-45618576 Msa0683200:intron 40.0%
GATTATCCCCATGCCAAATT+CGG + chr4_4:45618635-45618654 Msa0683200:intron 40.0%
TGAATTCAATTGACCTTCCC+TGG + chr4_4:45618696-45618715 Msa0683200:intron 40.0%
!! GTAGGCATGGTTCTAAATTG+CGG + chr4_4:45618750-45618769 Msa0683200:intron 40.0%
CGGCATCACAACTACAATTT+GGG - chr4_4:45618826-45618845 None:intergenic 40.0%
TCGGCATCACAACTACAATT+TGG - chr4_4:45618827-45618846 None:intergenic 40.0%
AAATTGTAGTTGTGATGCCG+AGG + chr4_4:45618826-45618845 Msa0683200:intron 40.0%
!!! TTTTTTGGAGGTCTTCACCT+CGG - chr4_4:45618846-45618865 None:intergenic 40.0%
ACAGTCTACAACTGCAATTG+TGG - chr4_4:45618881-45618900 None:intergenic 40.0%
TCAACCACTAAAGTCAGACA+GGG - chr4_4:45618949-45618968 None:intergenic 40.0%
ATCAACCACTAAAGTCAGAC+AGG - chr4_4:45618950-45618969 None:intergenic 40.0%
CCACAATGTGAATGCAATTG+AGG - chr4_4:45618977-45618996 None:intergenic 40.0%
CCTCAATTGCATTCACATTG+TGG + chr4_4:45618974-45618993 Msa0683200:intron 40.0%
TGAGACATTATGAGTAGGGT+CGG + chr4_4:45619001-45619020 Msa0683200:intron 40.0%
TCAACCAAATCATGTCAACC+AGG - chr4_4:45619165-45619184 None:intergenic 40.0%
TATGCCATGTATCTTCCATC+CGG - chr4_4:45619288-45619307 None:intergenic 40.0%
TGGAAGATACATGGCATACA+AGG + chr4_4:45619290-45619309 Msa0683200:CDS 40.0%
! ATACAAGGAGCAAGGTGTTT+CGG + chr4_4:45619305-45619324 Msa0683200:CDS 40.0%
CTCATACTTTCCTTTCCTCT+CGG + chr4_4:45619358-45619377 Msa0683200:CDS 40.0%
! TTGTTTCCACCCTTAGTTTG+AGG + chr4_4:45619430-45619449 Msa0683200:intron 40.0%
GATTCACTGATGGAAGAGTT+TGG + chr4_4:45619512-45619531 Msa0683200:CDS 40.0%
! ACTTATGATCTGCCTGGTTT+TGG + chr4_4:45619548-45619567 Msa0683200:CDS 40.0%
GACGATTCCAGATTTCGTTT+GGG - chr4_4:45619590-45619609 None:intergenic 40.0%
TGACGATTCCAGATTTCGTT+TGG - chr4_4:45619591-45619610 None:intergenic 40.0%
!!! TCGTTTTTAGCTGATGCTCT+TGG + chr4_4:45619623-45619642 Msa0683200:CDS 40.0%
!!! CTCTTGGTGTTGACAAGTTT+TGG + chr4_4:45619639-45619658 Msa0683200:CDS 40.0%
! TGGATCATTGGTTACTCAAG+TGG + chr4_4:45619659-45619678 Msa0683200:CDS 40.0%
TACATACCTGATAGACTTGC+AGG + chr4_4:45619710-45619729 Msa0683200:CDS 40.0%
CTCTCTTCGTTTGTCATCAA+AGG - chr4_4:45620275-45620294 None:intergenic 40.0%
AGTTTCTTATCAGGGAAGCA+TGG + chr4_4:45620389-45620408 Msa0683200:CDS 40.0%
TATCTCTTGGAAAGAGGGTA+AGG + chr4_4:45620435-45620454 Msa0683200:intron 40.0%
! GTTTACAAAAGTTGGTTCCG+AGG + chr4_4:45620653-45620672 Msa0683200:intron 40.0%
! CAGATCTCATTGCCTTTTTC+AGG + chr4_4:45620709-45620728 Msa0683200:intron 40.0%
TCAGTGCTTTGTCCTGAAAA+AGG - chr4_4:45620724-45620743 None:intergenic 40.0%
!!! TTTTCAGGACAAAGCACTGA+TGG + chr4_4:45620724-45620743 Msa0683200:intron 40.0%
GATGGAAGATCCAATCTATG+AGG + chr4_4:45620742-45620761 Msa0683200:CDS 40.0%
TGCCAGAAATCCTCATAGAT+TGG - chr4_4:45620755-45620774 None:intergenic 40.0%
!! TCTATGAGGATTTCTGGCAA+AGG + chr4_4:45620756-45620775 Msa0683200:CDS 40.0%
!! CTATGAGGATTTCTGGCAAA+GGG + chr4_4:45620757-45620776 Msa0683200:CDS 40.0%
GGGATGTGGAAGAATCAATT+AGG + chr4_4:45620777-45620796 Msa0683200:CDS 40.0%
GTGGAAGAATCAATTAGGCA+AGG + chr4_4:45620782-45620801 Msa0683200:CDS 40.0%
TCTGCAACTTGAGGTCTAAA+AGG - chr4_4:45620865-45620884 None:intergenic 40.0%
! GGCAATTTTCACTGAAACTC+AGG + chr4_4:45620922-45620941 Msa0683200:CDS 40.0%
! CACTGAAACTCAGGAGTATA+CGG + chr4_4:45620931-45620950 Msa0683200:CDS 40.0%
! ACTGAAACTCAGGAGTATAC+GGG + chr4_4:45620932-45620951 Msa0683200:CDS 40.0%
TTCTCGGTCCAATACACATA+TGG + chr4_4:45620957-45620976 Msa0683200:CDS 40.0%
CTCACTTGCCATATGTGTAT+TGG - chr4_4:45620968-45620987 None:intergenic 40.0%
GTTATGAAAATGCACGCAGA+AGG - chr4_4:45621008-45621027 None:intergenic 40.0%
! GATGGTAATGAGCGGATTTA+TGG - chr4_4:45621253-45621272 None:intergenic 40.0%
! AGAAGCATACAGCTCAATTG+AGG + chr4_4:45621323-45621342 Msa0683200:intron 40.0%
CAATCTTAATAGGACTGTCC+AGG - chr4_4:45621397-45621416 None:intergenic 40.0%
CTGGACAGTCCTATTAAGAT+TGG + chr4_4:45621395-45621414 Msa0683200:intron 40.0%
TAAATCAGACGGTCTGCATT+TGG + chr4_4:45621477-45621496 Msa0683200:intron 40.0%
GTACAATTGTTGACAGGGAA+TGG + chr4_4:45621745-45621764 Msa0683200:intron 40.0%
ACAAAATCAGTCATTGACGG+GGG - chr4_4:45621785-45621804 None:intergenic 40.0%
CACAAAATCAGTCATTGACG+GGG - chr4_4:45621786-45621805 None:intergenic 40.0%
GCACAAAATCAGTCATTGAC+GGG - chr4_4:45621787-45621806 None:intergenic 40.0%
GTACACAAACTCCCATATGA+AGG + chr4_4:45621830-45621849 Msa0683200:CDS 40.0%
!! AAGTTCAACGTTGGCTTCTA+GGG - chr4_4:45621972-45621991 None:intergenic 40.0%
! TTGCTGTTCAAGTTCAACGT+TGG - chr4_4:45621981-45622000 None:intergenic 40.0%
CAAGAAGTAGTAGCAAGTAG+TGG + chr4_4:45621998-45622017 Msa0683200:CDS 40.0%
ATGATATTGGCCAGAACAAC+GGG - chr4_4:45622079-45622098 None:intergenic 40.0%
GATGATATTGGCCAGAACAA+CGG - chr4_4:45622080-45622099 None:intergenic 40.0%
GTTCAATAGCCCAAAAACAG+GGG - chr4_4:45622189-45622208 None:intergenic 40.0%
CCCCCAAAAAAGGAAACATG+TGG - chr4_4:45618476-45618495 None:intergenic 45.0%
!!! ATTGACCTTCCCTGGTTTTG+AGG + chr4_4:45618704-45618723 Msa0683200:intron 45.0%
!!! TTGACCTTCCCTGGTTTTGA+GGG + chr4_4:45618705-45618724 Msa0683200:intron 45.0%
GGAATAGGTCAATGTAGGCA+TGG + chr4_4:45618737-45618756 Msa0683200:intron 45.0%
!! ATGGTTCTAAATTGCGGCTG+TGG + chr4_4:45618756-45618775 Msa0683200:intron 45.0%
CAACCACTAAAGTCAGACAG+GGG - chr4_4:45618948-45618967 None:intergenic 45.0%
ATTATGAGTAGGGTCGGTCT+AGG + chr4_4:45619007-45619026 Msa0683200:intron 45.0%
! TAGCTAGTCTGCTCAATACC+TGG + chr4_4:45619144-45619163 Msa0683200:intron 45.0%
! TTCCATCCGGAAGCATAATG+CGG - chr4_4:45619275-45619294 None:intergenic 45.0%
TACATGGCATACAAGGAGCA+AGG + chr4_4:45619297-45619316 Msa0683200:CDS 45.0%
! CGAGAGGAAAGGAAAGTATG+AGG - chr4_4:45619360-45619379 None:intergenic 45.0%
ACAATGCCTCAAACTAAGGG+TGG - chr4_4:45619439-45619458 None:intergenic 45.0%
TCCTCATCCCAAACGAAATC+TGG + chr4_4:45619580-45619599 Msa0683200:CDS 45.0%
! TCCAGATTTCGTTTGGGATG+AGG - chr4_4:45619584-45619603 None:intergenic 45.0%
AAGTGGAAGCAAGCATGCTT+GGG + chr4_4:45619676-45619695 Msa0683200:CDS 45.0%
ATCATATGGGTTCACCATGG+GGG - chr4_4:45620252-45620271 None:intergenic 45.0%
GATCATATGGGTTCACCATG+GGG - chr4_4:45620253-45620272 None:intergenic 45.0%
GGATCATATGGGTTCACCAT+GGG - chr4_4:45620254-45620273 None:intergenic 45.0%
AGGATCATATGGGTTCACCA+TGG - chr4_4:45620255-45620274 None:intergenic 45.0%
GACGAAGAACCTGGAACAAA+TGG + chr4_4:45620294-45620313 Msa0683200:CDS 45.0%
! TTTTCGCGTCCATTTGTTCC+AGG - chr4_4:45620306-45620325 None:intergenic 45.0%
CGAAGCTTTCCTAGACTTCT+TGG + chr4_4:45620350-45620369 Msa0683200:CDS 45.0%
AGGTGGCTGTCTTTATCTCT+TGG + chr4_4:45620422-45620441 Msa0683200:CDS 45.0%
TCGCGTTAACCCTAGTTAGA+TGG + chr4_4:45620551-45620570 Msa0683200:intron 45.0%
AGGAAATGCGAAACCCTTTG+TGG + chr4_4:45620802-45620821 Msa0683200:CDS 45.0%
AAATGCGAAACCCTTTGTGG+AGG + chr4_4:45620805-45620824 Msa0683200:CDS 45.0%
AAAGCAGCTTCCTCCACAAA+GGG - chr4_4:45620818-45620837 None:intergenic 45.0%
TGCTTTGCAGGTCTCGAATT+GGG + chr4_4:45620832-45620851 Msa0683200:CDS 45.0%
! CAGGAGTATACGGGATTTCT+CGG + chr4_4:45620941-45620960 Msa0683200:CDS 45.0%
! ATTTTACACCGCTGAGGGAA+GGG - chr4_4:45621282-45621301 None:intergenic 45.0%
! AATTTTACACCGCTGAGGGA+AGG - chr4_4:45621283-45621302 None:intergenic 45.0%
ATCTCGATTCTCTGCTGTCA+GGG + chr4_4:45621346-45621365 Msa0683200:intron 45.0%
CAGACCGTCTGATTTAAGCT+TGG - chr4_4:45621473-45621492 None:intergenic 45.0%
ACAGGGAATGGATGACAAAG+TGG + chr4_4:45621757-45621776 Msa0683200:intron 45.0%
AAGAAATGCTGAGGCTGAGA+GGG - chr4_4:45621931-45621950 None:intergenic 45.0%
AAAGAAATGCTGAGGCTGAG+AGG - chr4_4:45621932-45621951 None:intergenic 45.0%
!! ACGTTGGCTTCTAGGGTAAT+TGG - chr4_4:45621965-45621984 None:intergenic 45.0%
!! CAAGTTCAACGTTGGCTTCT+AGG - chr4_4:45621973-45621992 None:intergenic 45.0%
TAGTTGAGCTTCATCTCCGA+TGG + chr4_4:45622129-45622148 Msa0683200:three_prime_UTR 45.0%
TCTTTCCTATGCTGCTCCAT+CGG - chr4_4:45622148-45622167 None:intergenic 45.0%
!!! TATTTTTTTTTTTTAAGTTA+TGG + chr4_4:45618518-45618537 Msa0683200:intron 5.0%
!! TGAACCCACTTGGATTGGTC+CGG + chr4_4:45618562-45618581 Msa0683200:intron 50.0%
AGGTCAAAAGCCAACACCAC+CGG - chr4_4:45618584-45618603 None:intergenic 50.0%
!!! GTGGTGTTGGCTTTTGACCT+TGG + chr4_4:45618584-45618603 Msa0683200:intron 50.0%
! CTTGAGAAGAGCACACTCCA+AGG - chr4_4:45618604-45618623 None:intergenic 50.0%
CTTGGAGTGTGCTCTTCTCA+AGG + chr4_4:45618602-45618621 Msa0683200:intron 50.0%
GTGTGCTCTTCTCAAGGTCT+CGG + chr4_4:45618608-45618627 Msa0683200:intron 50.0%
TGTGCTCTTCTCAAGGTCTC+GGG + chr4_4:45618609-45618628 Msa0683200:intron 50.0%
TATCCCCATGCCAAATTCGG+TGG + chr4_4:45618638-45618657 Msa0683200:intron 50.0%
ATCCCCATGCCAAATTCGGT+GGG + chr4_4:45618639-45618658 Msa0683200:intron 50.0%
TAGCCCACCGAATTTGGCAT+GGG - chr4_4:45618645-45618664 None:intergenic 50.0%
CCAAACTAGCCCACCGAATT+TGG - chr4_4:45618651-45618670 None:intergenic 50.0%
!! CCAAATTCGGTGGGCTAGTT+TGG + chr4_4:45618648-45618667 Msa0683200:intron 50.0%
CAATCCCTCAAAACCAGGGA+AGG - chr4_4:45618712-45618731 None:intergenic 50.0%
ATAATGCGGGTAGCACTAGC+AGG - chr4_4:45619261-45619280 None:intergenic 50.0%
TGCTACCCGCATTATGCTTC+CGG + chr4_4:45619266-45619285 Msa0683200:CDS 50.0%
! TCCATCCGGAAGCATAATGC+GGG - chr4_4:45619274-45619293 None:intergenic 50.0%
GCTTCCGGATGGAAGATACA+TGG + chr4_4:45619281-45619300 Msa0683200:CDS 50.0%
CAAGTGGAAGCAAGCATGCT+TGG + chr4_4:45619675-45619694 Msa0683200:CDS 50.0%
TGACACTGACACGTAGAGAC+CGG - chr4_4:45620115-45620134 None:intergenic 50.0%
TGTCAGTGTCATATCGCGTC+TGG + chr4_4:45620124-45620143 Msa0683200:intron 50.0%
ACGAAGAGAGACGAAGAACC+TGG + chr4_4:45620285-45620304 Msa0683200:CDS 50.0%
! GGAAGCATGGTCAGATTGAC+AGG + chr4_4:45620402-45620421 Msa0683200:CDS 50.0%
AGCATGGTCAGATTGACAGG+TGG + chr4_4:45620405-45620424 Msa0683200:CDS 50.0%
! AAAGTTGGTTCCGAGGGCAT+AGG + chr4_4:45620660-45620679 Msa0683200:intron 50.0%
!! GGATTTCTGGCAAAGGGATG+TGG + chr4_4:45620763-45620782 Msa0683200:CDS 50.0%
CAAAGCAGCTTCCTCCACAA+AGG - chr4_4:45620819-45620838 None:intergenic 50.0%
CTGCTTTGCAGGTCTCGAAT+TGG + chr4_4:45620831-45620850 Msa0683200:CDS 50.0%
GCTTTGCAGGTCTCGAATTG+GGG + chr4_4:45620833-45620852 Msa0683200:CDS 50.0%
! GGGAAGGAGATGGTAATGAG+CGG - chr4_4:45621261-45621280 None:intergenic 50.0%
! TTTTACACCGCTGAGGGAAG+GGG - chr4_4:45621281-45621300 None:intergenic 50.0%
GATCTCGATTCTCTGCTGTC+AGG + chr4_4:45621345-45621364 Msa0683200:intron 50.0%
TCATGTGCGTGAGCGATAGA+GGG - chr4_4:45621548-45621567 None:intergenic 50.0%
TTCATGTGCGTGAGCGATAG+AGG - chr4_4:45621549-45621568 None:intergenic 50.0%
TTTGTGCATCGCGTACTACC+TGG + chr4_4:45621800-45621819 Msa0683200:CDS 50.0%
AGTTTGTGTACTGCAGCTCC+AGG - chr4_4:45621821-45621840 None:intergenic 50.0%
!!! ACACTTTTTGGAACCCCGCA+AGG + chr4_4:45621905-45621924 Msa0683200:CDS 50.0%
! AGTGTTTCCGCCCCTGTTTT+TGG + chr4_4:45622176-45622195 Msa0683200:three_prime_UTR 50.0%
!! GTGTTTCCGCCCCTGTTTTT+GGG + chr4_4:45622177-45622196 Msa0683200:three_prime_UTR 50.0%
CAATAGCCCAAAAACAGGGG+CGG - chr4_4:45622186-45622205 None:intergenic 50.0%
ACCACCGGACCAATCCAAGT+GGG - chr4_4:45618569-45618588 None:intergenic 55.0%
!! TTGGATTGGTCCGGTGGTGT+TGG + chr4_4:45618571-45618590 Msa0683200:intron 55.0%
AGCCCACCGAATTTGGCATG+GGG - chr4_4:45618644-45618663 None:intergenic 55.0%
CTAGCCCACCGAATTTGGCA+TGG - chr4_4:45618646-45618665 None:intergenic 55.0%
CACTAAAGTCAGACAGGGGC+AGG - chr4_4:45618944-45618963 None:intergenic 55.0%
CTGCCCCTGTCTGACTTTAG+TGG + chr4_4:45618942-45618961 Msa0683200:intron 55.0%
ACCCGCATTATGCTTCCGGA+TGG + chr4_4:45619270-45619289 Msa0683200:CDS 55.0%
! TTCCTTTCCTCTCGGCTTGC+AGG + chr4_4:45619366-45619385 Msa0683200:CDS 55.0%
AACCTGCAAGCCGAGAGGAA+AGG - chr4_4:45619371-45619390 None:intergenic 55.0%
CAAACAACCTGCAAGCCGAG+AGG - chr4_4:45619376-45619395 None:intergenic 55.0%
GGATCGCTCTCACCAAAACC+AGG - chr4_4:45619563-45619582 None:intergenic 55.0%
GTTCACCATGGGGGCAAACA+TGG - chr4_4:45620243-45620262 None:intergenic 55.0%
CTTGGGATAGCCTATGCCCT+CGG - chr4_4:45620673-45620692 None:intergenic 55.0%
! TGTGGAGGAAGCTGCTTTGC+AGG + chr4_4:45620820-45620839 Msa0683200:CDS 55.0%
! GCTTGCTAACGGCATGACCA+GGG - chr4_4:45621375-45621394 None:intergenic 55.0%
!! GGACTGTCCAGGCTTGCTAA+CGG - chr4_4:45621386-45621405 None:intergenic 55.0%
CATCTCCGATGGAGCAGCAT+AGG + chr4_4:45622140-45622159 Msa0683200:three_prime_UTR 55.0%
!! ACCCACTTGGATTGGTCCGG+TGG + chr4_4:45618565-45618584 Msa0683200:intron 60.0%
CACCACCGGACCAATCCAAG+TGG - chr4_4:45618570-45618589 None:intergenic 60.0%
TGCTGCCATGTTTGCCCCCA+TGG + chr4_4:45620235-45620254 Msa0683200:CDS 60.0%
CTGAGGGAAGGGGAAGGAGA+TGG - chr4_4:45621271-45621290 None:intergenic 60.0%
TCTCCTTCCCCTTCCCTCAG+CGG + chr4_4:45621271-45621290 Msa0683200:intron 60.0%
CTCTGCTGTCAGGGAATCCC+TGG + chr4_4:45621355-45621374 Msa0683200:intron 60.0%
!! GGCTTGCTAACGGCATGACC+AGG - chr4_4:45621376-45621395 None:intergenic 60.0%
GGTCATGCCGTTAGCAAGCC+TGG + chr4_4:45621376-45621395 Msa0683200:intron 60.0%
ACACCGCTGAGGGAAGGGGA+AGG - chr4_4:45621277-45621296 None:intergenic 65.0%
TGAGGCTGAGAGGGCCTTGC+GGG - chr4_4:45621922-45621941 None:intergenic 65.0%
CTGAGGCTGAGAGGGCCTTG+CGG - chr4_4:45621923-45621942 None:intergenic 65.0%
GAGGCTGAGAGGGCCTTGCG+GGG - chr4_4:45621921-45621940 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 45617649 45622329 45617649 ID=Msa0683200;Name=Msa0683200
chr4_4 mRNA 45617649 45622329 45617649 ID=Msa0683200-mRNA-1;Parent=Msa0683200;Name=Msa0683200-mRNA-1;_AED=0.02;_eAED=0.02;_QI=218|1|1|1|1|1|6|290|489
chr4_4 exon 45617649 45618158 45617649 ID=Msa0683200-mRNA-1:exon:11106;Parent=Msa0683200-mRNA-1
chr4_4 exon 45619196 45619387 45619196 ID=Msa0683200-mRNA-1:exon:11107;Parent=Msa0683200-mRNA-1
chr4_4 exon 45619495 45619731 45619495 ID=Msa0683200-mRNA-1:exon:11108;Parent=Msa0683200-mRNA-1
chr4_4 exon 45620234 45620451 45620234 ID=Msa0683200-mRNA-1:exon:11109;Parent=Msa0683200-mRNA-1
chr4_4 exon 45620731 45620982 45620731 ID=Msa0683200-mRNA-1:exon:11110;Parent=Msa0683200-mRNA-1
chr4_4 exon 45621761 45622329 45621761 ID=Msa0683200-mRNA-1:exon:11111;Parent=Msa0683200-mRNA-1
chr4_4 five_prime_UTR 45617649 45617866 45617649 ID=Msa0683200-mRNA-1:five_prime_utr;Parent=Msa0683200-mRNA-1
chr4_4 CDS 45617867 45618158 45617867 ID=Msa0683200-mRNA-1:cds;Parent=Msa0683200-mRNA-1
chr4_4 CDS 45619196 45619387 45619196 ID=Msa0683200-mRNA-1:cds;Parent=Msa0683200-mRNA-1
chr4_4 CDS 45619495 45619731 45619495 ID=Msa0683200-mRNA-1:cds;Parent=Msa0683200-mRNA-1
chr4_4 CDS 45620234 45620451 45620234 ID=Msa0683200-mRNA-1:cds;Parent=Msa0683200-mRNA-1
chr4_4 CDS 45620731 45620982 45620731 ID=Msa0683200-mRNA-1:cds;Parent=Msa0683200-mRNA-1
chr4_4 CDS 45621761 45622039 45621761 ID=Msa0683200-mRNA-1:cds;Parent=Msa0683200-mRNA-1
chr4_4 three_prime_UTR 45622040 45622329 45622040 ID=Msa0683200-mRNA-1:three_prime_utr;Parent=Msa0683200-mRNA-1
Gene Sequence

>Msa0683200

ATGAATCAAAGAGAGTTGATACGTTTCAAGATATGTGTAAGAGAGTTCATGATTGGGGTTTCAGAACTAACTGTAGAATTCTTAAAAGGTTGCAGAGACATAGTGAAACAAAGTATAGTGAATGAAGATTCTTTCATTGTTAAGAAATTTGGAAAGATTGGGAAGAGAGTGAGAAAACCTTGTGAGAAATTGTTGAACAAATTGAGTTACTTTAATGAGTATTTGCCAGAAGATAAAGACCCACTTCATGCTTGGTTTGTCATCTTGTTCGTTTCTTTACTTGCTTTCTCAGCTTTGTATGTAAATTTTGAGTATGATCAATCTGCCCCACTTGAGAAGCAAGTATTTTTGCATCCTGCTAGTGCTACCCGCATTATGCTTCCGGATGGAAGATACATGGCATACAAGGAGCAAGGTGTTTCGGCTGACAGAGCAAGATTTTCGATTATTGCTCCTCATACTTTCCTTTCCTCTCGGCTTGCAGGAATTCCTGGTGTTAAAGATTCACTGATGGAAGAGTTTGGCGTTCACTTGATTACTTATGATCTGCCTGGTTTTGGTGAGAGCGATCCTCATCCCAAACGAAATCTGGAATCGTCAGCAATAGATATGTCGTTTTTAGCTGATGCTCTTGGTGTTGACAAGTTTTGGATCATTGGTTACTCAAGTGGAAGCAAGCATGCTTGGGCTGCGCTTAGATACATACCTGATAGACTTGCAGGTGCTGCCATGTTTGCCCCCATGGTGAACCCATATGATCCTTTGATGACAAACGAAGAGAGACGAAGAACCTGGAACAAATGGACGCGAAAAAGAAAATTGATGTACTTCTTAGCTCGAAGCTTTCCTAGACTTCTTGGTTTCTTCTATCAGCGAAGTTTCTTATCAGGGAAGCATGGTCAGATTGACAGGTGGCTGTCTTTATCTCTTGGAAAGAGGGACAAAGCACTGATGGAAGATCCAATCTATGAGGATTTCTGGCAAAGGGATGTGGAAGAATCAATTAGGCAAGGAAATGCGAAACCCTTTGTGGAGGAAGCTGCTTTGCAGGTCTCGAATTGGGGTTTCAGCCTTTTAGACCTCAAGTTGCAGAAACGAAAATACAAAAGGAATGTGCTTAATTGGCTTAAGGCAATTTTCACTGAAACTCAGGAGTATACGGGATTTCTCGGTCCAATACACATATGGCAAGGAATGGATGACAAAGTGGTTCCCCCGTCAATGACTGATTTTGTGCATCGCGTACTACCTGGAGCTGCAGTACACAAACTCCCATATGAAGGCCATTTCACATATATATACTTTTGTGATGAATGCCACAGACAGATATTTACTACACTTTTTGGAACCCCGCAAGGCCCTCTCAGCCTCAGCATTTCTTTAGAAGTAGATCCAATTACCCTAGAAGCCAACGTTGAACTTGAACAGCAAGAAGTAGTAGCAAGTAGTGGTGATTATGCCACTGATTAG

Protein sequence

>Msa0683200

MNQRELIRFKICVREFMIGVSELTVEFLKGCRDIVKQSIVNEDSFIVKKFGKIGKRVRKPCEKLLNKLSYFNEYLPEDKDPLHAWFVILFVSLLAFSALYVNFEYDQSAPLEKQVFLHPASATRIMLPDGRYMAYKEQGVSADRARFSIIAPHTFLSSRLAGIPGVKDSLMEEFGVHLITYDLPGFGESDPHPKRNLESSAIDMSFLADALGVDKFWIIGYSSGSKHAWAALRYIPDRLAGAAMFAPMVNPYDPLMTNEERRRTWNKWTRKRKLMYFLARSFPRLLGFFYQRSFLSGKHGQIDRWLSLSLGKRDKALMEDPIYEDFWQRDVEESIRQGNAKPFVEEAALQVSNWGFSLLDLKLQKRKYKRNVLNWLKAIFTETQEYTGFLGPIHIWQGMDDKVVPPSMTDFVHRVLPGAAVHKLPYEGHFTYIYFCDECHRQIFTTLFGTPQGPLSLSISLEVDPITLEANVELEQQEVVASSGDYATD*