AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576080 MtrunA17_Chr8g0393311 98.711 388 5 0 1 388 1 388 0.0 790
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576080 AT1G48420.1 72.441 381 105 0 8 388 21 401 0.0 573
Msa0576080 AT1G48420.2 72.441 381 105 0 8 388 21 401 0.0 573
Msa0576080 AT1G48420.3 72.441 381 105 0 8 388 21 401 0.0 573
Msa0576080 AT3G26115.1 22.849 337 203 11 62 356 91 412 6.66e-11 63.9
Msa0576080 AT3G26115.3 22.849 337 203 11 62 356 8 329 7.78e-11 63.5
Msa0576080 AT3G26115.2 22.849 337 203 11 62 356 8 329 7.78e-11 63.5

Find 129 sgRNAs with CRISPR-Local

Find 599 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATTTAAATCATATTTA+TGG 0.095345 4_1:-80153980 None:intergenic
TTCCTTCCTTCCCATTTCTT+TGG 0.168403 4_1:-80153596 None:intergenic
CTGAAGCGCGACGATCTTTC+TGG 0.194591 4_1:+80146081 Msa0576080:CDS
AATTTGTGAATATTCTTCTT+TGG 0.263261 4_1:-80146361 None:intergenic
AGACATAAATGCAAACAATA+AGG 0.291586 4_1:-80153774 None:intergenic
AAAGAAGAATATTCACAAAT+TGG 0.296772 4_1:+80146363 Msa0576080:CDS
TTATGAGAATTGATGTAATA+AGG 0.298430 4_1:-80153914 None:intergenic
GTACATACAGGTGGCCTCTT+AGG 0.303821 4_1:+80153629 Msa0576080:CDS
TGGGTTCCTTTGTGGGGAAT+TGG 0.314828 4_1:+80153675 Msa0576080:CDS
GCTGATTCTGTTATTACAAT+TGG 0.315186 4_1:+80146171 Msa0576080:CDS
CTAATTTAAATCATATTTAT+GGG 0.316825 4_1:-80153979 None:intergenic
GCTTAGAAGTGCGGAGTATA+AGG 0.324616 4_1:-80146260 None:intergenic
TGGAAACAAAGTGCGGAAAT+TGG 0.338825 4_1:+80146116 Msa0576080:CDS
CACAATTGCCGGTTTAGCAC+TGG 0.344641 4_1:+80151467 Msa0576080:CDS
CTTCTTGTTGAGCGTTTGAT+TGG 0.348706 4_1:+80146318 Msa0576080:CDS
GGGGCTACATAGAGGCAGTT+AGG 0.350018 4_1:+80151020 Msa0576080:intron
AGCCACACTTCTGTATTTGC+TGG 0.350872 4_1:-80146060 None:intergenic
GATCAGCTGGGTTCCTTTGT+GGG 0.353254 4_1:+80153668 Msa0576080:CDS
TGAATGAAAATCCAAAGAAA+TGG 0.354272 4_1:+80153585 Msa0576080:CDS
CTTTCCAATTCCATCTTGCC+TGG 0.356939 4_1:-80153726 None:intergenic
CGATCAGCTGGGTTCCTTTG+TGG 0.368488 4_1:+80153667 Msa0576080:CDS
TAAATTAGAGATTTAATCCT+AGG 0.373773 4_1:+80153994 Msa0576080:three_prime_UTR
TGCTTACAGGCCAAGGGTCT+TGG 0.379002 4_1:+80151955 Msa0576080:intron
AGATTGAGACTTAAACCTTC+AGG 0.397047 4_1:-80154055 None:intergenic
TGCCAGTGAGGGTGGGATCT+TGG 0.400276 4_1:-80146293 None:intergenic
GTTCCCAGGCAAGATGGAAT+TGG 0.402849 4_1:+80153722 Msa0576080:CDS
GCGGAAATTGGAGTTCTTGA+TGG 0.407020 4_1:+80146128 Msa0576080:CDS
TCTGTATTTGCTGGCAGGTT+CGG 0.409436 4_1:-80146051 None:intergenic
ACAAAGTTGTGGAAGTAATC+CGG 0.413991 4_1:-80151622 None:intergenic
GACATAAATGCAAACAATAA+GGG 0.416132 4_1:-80153773 None:intergenic
TGATGAACCCAGTGCTAAAC+CGG 0.425541 4_1:-80151475 None:intergenic
TACTTCCACAACTTTGTTCA+AGG 0.425604 4_1:+80151628 Msa0576080:CDS
TATGAGAAGGTATGGGGTCT+AGG 0.430799 4_1:-80145981 None:intergenic
GTTCTTTCTCTTTCACCTGA+AGG 0.443293 4_1:+80154040 Msa0576080:three_prime_UTR
AGATACAATATGAGAAGGTA+TGG 0.444228 4_1:-80145989 None:intergenic
GGGCTACATAGAGGCAGTTA+GGG 0.449619 4_1:+80151021 Msa0576080:CDS
TAACATATGGCCTCCTCCCT+TGG 0.454510 4_1:-80146515 None:intergenic
CTTCTTTGGATATAAGTTGA+AGG 0.456772 4_1:-80146347 None:intergenic
ACAATTGCCGGTTTAGCACT+GGG 0.459037 4_1:+80151468 Msa0576080:CDS
AGAGAGTTTGATCCGCCAAC+AGG 0.462134 4_1:-80146540 None:intergenic
TTTGTTCAAGGCTTGCTTGA+CGG 0.462516 4_1:+80151640 Msa0576080:CDS
ACACTTCTGTATTTGCTGGC+AGG 0.463369 4_1:-80146056 None:intergenic
TGTGAATCGGAGTCGGAAGA+TGG 0.463540 4_1:-80146017 None:intergenic
TTGTTCTTGACCCGGTATAC+AGG 0.463568 4_1:+80152040 Msa0576080:CDS
TCGAATAAATACCTGTATAC+CGG 0.463817 4_1:-80152051 None:intergenic
GTATGACAAGGTCGATCAGC+TGG 0.464943 4_1:+80153655 Msa0576080:CDS
AGCCATACACAGCTCCTTCA+TGG 0.465709 4_1:+80145950 Msa0576080:CDS
GAATGAAAATCCAAAGAAAT+GGG 0.478205 4_1:+80153586 Msa0576080:CDS
AGTTTATCATGTAAAATCCT+AGG 0.487547 4_1:-80154011 None:intergenic
GACCAAGATCCCACCCTCAC+TGG 0.487961 4_1:+80146291 Msa0576080:CDS
ATATTGTTGTGGCTTGTGGC+AGG 0.488200 4_1:+80151092 Msa0576080:CDS
CCATATGTTATTCCTGTTGG+CGG 0.489575 4_1:+80146528 Msa0576080:CDS
AAAGAAGTTGCTGAAGCTAC+AGG 0.491243 4_1:+80152015 Msa0576080:CDS
GATTCTGTTATTACAATTGG+AGG 0.492732 4_1:+80146174 Msa0576080:CDS
AGAAGGTATGGGGTCTAGGT+AGG 0.496529 4_1:-80145977 None:intergenic
TTTATTCCTTCTCAGCGGTA+AGG 0.497920 4_1:+80153538 Msa0576080:intron
CCGCCAACAGGAATAACATA+TGG 0.503502 4_1:-80146528 None:intergenic
AAGATCCTCTTCGTACATAC+AGG 0.505875 4_1:+80153617 Msa0576080:CDS
CATTGCATAGCCAAGACCCT+TGG 0.507444 4_1:-80151965 None:intergenic
TCTCATACTATACATCCTCT+TGG 0.507451 4_1:-80153815 None:intergenic
AGGCCATATGTTATTCCTGT+TGG 0.513249 4_1:+80146525 Msa0576080:CDS
GCCCATGAAGGAGCTGTGTA+TGG 0.513916 4_1:-80145952 None:intergenic
GGAAGCTTCCATCTGTGAAT+CGG 0.515135 4_1:-80146030 None:intergenic
CAAGTCTCAACAGTGATGGC+GGG 0.516623 4_1:+80145907 Msa0576080:CDS
ATCCAAAGAAATGGGAAGGA+AGG 0.517188 4_1:+80153594 Msa0576080:CDS
CAAAGTTGTGGAAGTAATCC+GGG 0.521477 4_1:-80151621 None:intergenic
GATACAATATGAGAAGGTAT+GGG 0.525600 4_1:-80145988 None:intergenic
GAATCTGTTCCCAGGCAAGA+TGG 0.526272 4_1:+80153716 Msa0576080:CDS
AAGAAGATTGCCAGTGAGGG+TGG 0.528089 4_1:-80146301 None:intergenic
CCTTGTCATACAATCCTAAG+AGG 0.528394 4_1:-80153643 None:intergenic
AGCTCATCAACCAAGGGAGG+AGG 0.529265 4_1:+80146505 Msa0576080:CDS
TTTCCAATTCCATCTTGCCT+GGG 0.529547 4_1:-80153725 None:intergenic
TTGCTTGACGGACTCAAAGC+TGG 0.530861 4_1:+80151652 Msa0576080:CDS
CATTGAGTAGCTTGAAAGCA+AGG 0.540202 4_1:+80151496 Msa0576080:CDS
TGTAATTGTAATGAAATGTA+TGG 0.542665 4_1:+80145871 Msa0576080:exon
TGGCACGACAGTGATTACTT+TGG 0.547420 4_1:-80146200 None:intergenic
GATGATATTGTTGTGGCTTG+TGG 0.554768 4_1:+80151088 Msa0576080:CDS
GTGAATCGGAGTCGGAAGAT+GGG 0.555114 4_1:-80146016 None:intergenic
TTTATGGGAGTGATGATTGT+GGG 0.556296 4_1:-80153964 None:intergenic
ATTCTCCGTTTGTGATGACC+CGG 0.556941 4_1:+80151603 Msa0576080:CDS
GTAATCCGGGTCATCACAAA+CGG 0.557799 4_1:-80151608 None:intergenic
GATCAAACTCTCTCGGAACA+TGG 0.558246 4_1:+80146550 Msa0576080:CDS
ATCAGCTGGGTTCCTTTGTG+GGG 0.558594 4_1:+80153669 Msa0576080:CDS
CTTTCTGGAATGCAATTGAG+TGG 0.561261 4_1:+80146096 Msa0576080:CDS
CGAATAAATACCTGTATACC+GGG 0.563504 4_1:-80152050 None:intergenic
TCTACTCAGGGGCTACATAG+AGG 0.565560 4_1:+80151012 Msa0576080:intron
AACAAGAAGATTGCCAGTGA+GGG 0.566617 4_1:-80146304 None:intergenic
TACAGGTGTTGTTCTTGACC+CGG 0.568201 4_1:+80152032 Msa0576080:CDS
GCCATACACAGCTCCTTCAT+GGG 0.568763 4_1:+80145951 Msa0576080:CDS
TTCCATCTGTGAATCGGAGT+CGG 0.579716 4_1:-80146024 None:intergenic
GAAAATCCAAAGAAATGGGA+AGG 0.581955 4_1:+80153590 Msa0576080:CDS
TTCCGACTCCGATTCACAGA+TGG 0.583626 4_1:+80146022 Msa0576080:CDS
GCAAGTCTCAACAGTGATGG+CGG 0.587381 4_1:+80145906 Msa0576080:CDS
GCAAGCCTTGAACAAAGTTG+TGG 0.588520 4_1:-80151633 None:intergenic
TGTGGGGAATTGGCAACGAA+TGG 0.595485 4_1:+80153685 Msa0576080:CDS
GTTGGCGGATCAAACTCTCT+CGG 0.600283 4_1:+80146543 Msa0576080:CDS
TTTAACTGCTTACAGGCCAA+GGG 0.601343 4_1:+80151949 Msa0576080:intron
AGCGGATTCAGCAATTGCAT+CGG 0.601538 4_1:-80146151 None:intergenic
TCTAGGTAGGATGCCCATGA+AGG 0.602506 4_1:-80145964 None:intergenic
ATGTTAATGAATCTGTTCCC+AGG 0.603513 4_1:+80153708 Msa0576080:CDS
CAACAAGAAGATTGCCAGTG+AGG 0.606515 4_1:-80146305 None:intergenic
AAAGAAAAGCTCATCAACCA+AGG 0.607592 4_1:+80146498 Msa0576080:CDS
GAAGCAAGTCTCAACAGTGA+TGG 0.607865 4_1:+80145903 Msa0576080:CDS
AGAATTGATGTAATAAGGTG+AGG 0.614054 4_1:-80153909 None:intergenic
TAAATATATCTTGCTCCAAG+AGG 0.616763 4_1:+80153800 Msa0576080:three_prime_UTR
ATTTATGGGAGTGATGATTG+TGG 0.620301 4_1:-80153965 None:intergenic
CAAGTTTGATGATATTGTTG+TGG 0.625508 4_1:+80151081 Msa0576080:CDS
GCAAGAGATACAATATGAGA+AGG 0.625884 4_1:-80145994 None:intergenic
TATGACAAGGTCGATCAGCT+GGG 0.626866 4_1:+80153656 Msa0576080:CDS
AGGTGAAAGAGAAAGAACCT+AGG 0.627318 4_1:-80154035 None:intergenic
AGAAGATTGCCAGTGAGGGT+GGG 0.629815 4_1:-80146300 None:intergenic
ATTCAAATACTTAGCAGCAA+CGG 0.630168 4_1:-80146226 None:intergenic
CTATGCAATGAACACTTCTG+AGG 0.630985 4_1:+80151978 Msa0576080:CDS
ATACTTAGCAGCAACGGCAG+TGG 0.635268 4_1:-80146220 None:intergenic
ATTGAGTAGCTTGAAAGCAA+GGG 0.638253 4_1:+80151497 Msa0576080:CDS
ATTGAGCTGCAGATTCAAAG+TGG 0.643773 4_1:+80151046 Msa0576080:CDS
AAAAGCTCATCAACCAAGGG+AGG 0.644593 4_1:+80146502 Msa0576080:CDS
CAACGAGATGCTTAGAAGTG+CGG 0.644777 4_1:-80146269 None:intergenic
AAGAAAAGCTCATCAACCAA+GGG 0.645910 4_1:+80146499 Msa0576080:CDS
ATCCTCTTCGTACATACAGG+TGG 0.648696 4_1:+80153620 Msa0576080:CDS
AATTGTAATAACAGAATCAG+CGG 0.651486 4_1:-80146169 None:intergenic
CCTCTTAGGATTGTATGACA+AGG 0.657121 4_1:+80153643 Msa0576080:CDS
GAAGTGCGGAGTATAAGGAA+AGG 0.661921 4_1:-80146255 None:intergenic
AAGTCTCAACAGTGATGGCG+GGG 0.666775 4_1:+80145908 Msa0576080:CDS
GGCCACCTGTATGTACGAAG+AGG 0.673188 4_1:-80153622 None:intergenic
TGCCAGCAAATACAGAAGTG+TGG 0.675881 4_1:+80146058 Msa0576080:CDS
ATACAATATGAGAAGGTATG+GGG 0.676303 4_1:-80145987 None:intergenic
TCGTTGCCAATTCCCCACAA+AGG 0.683550 4_1:-80153681 None:intergenic
AATTGAGTGGAAACAAAGTG+CGG 0.729797 4_1:+80146109 Msa0576080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAATTTTTGTATTTGAT+TGG + chr4_1:80149403-80149422 Msa0576080:intron 10.0%
!! TAATATAAAAAATCAAGATT+TGG + chr4_1:80151280-80151299 Msa0576080:intron 10.0%
!!! TTATTATTTACATTTTGTTT+AGG - chr4_1:80152638-80152657 None:intergenic 10.0%
!!! TTTTTTTGACAAAAAATTAT+AGG + chr4_1:80152810-80152829 Msa0576080:intron 10.0%
!!! TATTATATTTGTTATATTGT+TGG - chr4_1:80153089-80153108 None:intergenic 10.0%
!! CTAATTTAAATCATATTTAT+GGG - chr4_1:80153982-80154001 None:intergenic 10.0%
!! TCTAATTTAAATCATATTTA+TGG - chr4_1:80153983-80154002 None:intergenic 10.0%
!! AAAAGAAAAAAAAATAAAGA+AGG - chr4_1:80154131-80154150 None:intergenic 10.0%
!! AATTGAGTAAAAACTTATAT+GGG - chr4_1:80146745-80146764 None:intergenic 15.0%
!! GCATTAAAAGATAAAATTTA+AGG - chr4_1:80147138-80147157 None:intergenic 15.0%
!! ATGTATTTGAAAATTATCAA+TGG - chr4_1:80148342-80148361 None:intergenic 15.0%
!!! AATTTCAACGTTTTATAAAA+AGG - chr4_1:80149132-80149151 None:intergenic 15.0%
!! TTTGTCAAAAATAAAAATAG+TGG + chr4_1:80149346-80149365 Msa0576080:intron 15.0%
!! AATTTATATAGCTATTTAAC+CGG - chr4_1:80149592-80149611 None:intergenic 15.0%
!! TTTGAAAACATAGTAAATAA+TGG - chr4_1:80150354-80150373 None:intergenic 15.0%
!!! TTTTCGAGTATAAAAATATT+AGG - chr4_1:80150646-80150665 None:intergenic 15.0%
!!! TATTTTTATACTCGAAAAAT+TGG + chr4_1:80150648-80150667 Msa0576080:intron 15.0%
!! TTCTTTGTATTTATTGTAAT+AGG - chr4_1:80150966-80150985 None:intergenic 15.0%
!! CAATAAAATATAAACATGTA+GGG - chr4_1:80152463-80152482 None:intergenic 15.0%
!! ACAATAAAATATAAACATGT+AGG - chr4_1:80152464-80152483 None:intergenic 15.0%
!! CAAAAGAATAAAATTATAGA+AGG + chr4_1:80152760-80152779 Msa0576080:intron 15.0%
!!! ATGTTAGCTTTTTTTTTTAA+AGG + chr4_1:80152848-80152867 Msa0576080:intron 15.0%
!! ATTTCATCTATAAAGAAAAT+AGG - chr4_1:80153215-80153234 None:intergenic 15.0%
!!! TTTTTTTTTATAATAGCCAA+TGG - chr4_1:80153240-80153259 None:intergenic 15.0%
!! ACCATTAGATTAAAAATAAA+TGG + chr4_1:80153861-80153880 Msa0576080:three_prime_UTR 15.0%
!!! ACCATTTATTTTTAATCTAA+TGG - chr4_1:80153865-80153884 None:intergenic 15.0%
!! TGTAATTGTAATGAAATGTA+TGG + chr4_1:80145871-80145890 Msa0576080:exon 20.0%
!! AATTTGTGAATATTCTTCTT+TGG - chr4_1:80146364-80146383 None:intergenic 20.0%
!! AAAGAAGAATATTCACAAAT+TGG + chr4_1:80146363-80146382 Msa0576080:CDS 20.0%
!! AACAAGATAAAATTGAAAAG+AGG - chr4_1:80146642-80146661 None:intergenic 20.0%
!! CAATTGAGTAAAAACTTATA+TGG - chr4_1:80146746-80146765 None:intergenic 20.0%
!!! ACTTAAAACTCAATGTATTT+TGG + chr4_1:80147209-80147228 Msa0576080:intron 20.0%
!!! CACTTATCATTGTATTTTTT+AGG - chr4_1:80147438-80147457 None:intergenic 20.0%
!! ACAATTTGTAATTTGAATGA+AGG + chr4_1:80147579-80147598 Msa0576080:intron 20.0%
!! ATACCATAATAATGAATACT+TGG + chr4_1:80147653-80147672 Msa0576080:intron 20.0%
!! AGTGTAAAATACTTAAGTAT+GGG + chr4_1:80148136-80148155 Msa0576080:intron 20.0%
!!! TTGTTCGGTTTTTTTTTTTT+TGG + chr4_1:80148870-80148889 Msa0576080:intron 20.0%
!!! TTTTTTTTGGAACATAAACA+AGG + chr4_1:80148883-80148902 Msa0576080:intron 20.0%
!!! TTTTTTTGGAACATAAACAA+GGG + chr4_1:80148884-80148903 Msa0576080:intron 20.0%
!! TCAATAGATTAAATTTGACT+CGG + chr4_1:80149440-80149459 Msa0576080:intron 20.0%
!!! ATATTTTTTCACATGATATC+AGG - chr4_1:80150067-80150086 None:intergenic 20.0%
!!! GTTTTTAAAAGTTGATATCA+TGG - chr4_1:80150422-80150441 None:intergenic 20.0%
!! GTATAAAAATATTAGGATGT+TGG - chr4_1:80150639-80150658 None:intergenic 20.0%
!! TGATTAAATTATTCTACTCA+GGG + chr4_1:80151000-80151019 Msa0576080:intron 20.0%
!!! CATAAAATCTGCATTTTTAA+TGG + chr4_1:80152703-80152722 Msa0576080:intron 20.0%
!! AAAACGCTAGTTAAAAATAA+TGG - chr4_1:80152881-80152900 None:intergenic 20.0%
!!! ATTATTTTTAACTAGCGTTT+TGG + chr4_1:80152880-80152899 Msa0576080:intron 20.0%
!!! AATTTGCTTAAGTGTATAAT+TGG + chr4_1:80153163-80153182 Msa0576080:intron 20.0%
!!! GCTTGAGATTATTTATTTTT+AGG + chr4_1:80153321-80153340 Msa0576080:intron 20.0%
!! ACTATATAAAACTTGCATTT+GGG - chr4_1:80153384-80153403 None:intergenic 20.0%
!! AACTATATAAAACTTGCATT+TGG - chr4_1:80153385-80153404 None:intergenic 20.0%
!! CCTAAATTTCTTATAAATGA+TGG - chr4_1:80153409-80153428 None:intergenic 20.0%
!! CCATCATTTATAAGAAATTT+AGG + chr4_1:80153406-80153425 Msa0576080:intron 20.0%
!!! TATTTTTAATCTAATGGTTG+AGG - chr4_1:80153859-80153878 None:intergenic 20.0%
!! TTATGAGAATTGATGTAATA+AGG - chr4_1:80153917-80153936 None:intergenic 20.0%
!! TAAATTAGAGATTTAATCCT+AGG + chr4_1:80153994-80154013 Msa0576080:three_prime_UTR 20.0%
! AATTGTAATAACAGAATCAG+CGG - chr4_1:80146172-80146191 None:intergenic 25.0%
! AAAAGAGGTAAATAATGATG+TGG - chr4_1:80146627-80146646 None:intergenic 25.0%
! TCAAAATTGATGCAAAAGAA+TGG - chr4_1:80146672-80146691 None:intergenic 25.0%
!! TCAATTTTGAATTTCACTCT+AGG + chr4_1:80146682-80146701 Msa0576080:intron 25.0%
!! CAATTTTGAATTTCACTCTA+GGG + chr4_1:80146683-80146702 Msa0576080:intron 25.0%
!!! TATTATCTTTTGTTGTCTCT+GGG - chr4_1:80146885-80146904 None:intergenic 25.0%
!!! TTATTATCTTTTGTTGTCTC+TGG - chr4_1:80146886-80146905 None:intergenic 25.0%
!! AGACAAATGTGAAAACTTTT+CGG - chr4_1:80146912-80146931 None:intergenic 25.0%
!! AAAGTTTTCACATTTGTCTT+TGG + chr4_1:80146913-80146932 Msa0576080:intron 25.0%
! AGTTGCTAAAATAAGTCTTA+TGG - chr4_1:80147175-80147194 None:intergenic 25.0%
!!! ATGTATTTTGGTAAAAACGA+AGG + chr4_1:80147221-80147240 Msa0576080:intron 25.0%
!!! CGAACATATTTTTCAGAAAA+TGG + chr4_1:80147252-80147271 Msa0576080:intron 25.0%
!!! ACATATTTTTCAGAAAATGG+AGG + chr4_1:80147255-80147274 Msa0576080:intron 25.0%
! AATAGAGCTGTTAAAGAAAA+AGG - chr4_1:80147396-80147415 None:intergenic 25.0%
! TATTATGTTATTAGAGAGTG+TGG + chr4_1:80147545-80147564 Msa0576080:intron 25.0%
!! ATTATGTTATTAGAGAGTGT+GGG + chr4_1:80147546-80147565 Msa0576080:intron 25.0%
! ATTCATTATTATGGTATTGC+TGG - chr4_1:80147650-80147669 None:intergenic 25.0%
! ACTCCAAGTATTCATTATTA+TGG - chr4_1:80147659-80147678 None:intergenic 25.0%
! AAAACAATGTATATGATCAG+TGG + chr4_1:80147693-80147712 Msa0576080:intron 25.0%
! AACAAGATACAAGATACAAA+AGG + chr4_1:80147806-80147825 Msa0576080:intron 25.0%
! AATAATTCACCAAACTACAT+AGG - chr4_1:80147962-80147981 None:intergenic 25.0%
! CAGTGTAAAATACTTAAGTA+TGG + chr4_1:80148135-80148154 Msa0576080:intron 25.0%
!!! TATTCTGAGTTACTTTTTGT+GGG - chr4_1:80148562-80148581 None:intergenic 25.0%
!!! ATATTCTGAGTTACTTTTTG+TGG - chr4_1:80148563-80148582 None:intergenic 25.0%
!! AGAAAACTTGGAAAATTTTG+TGG + chr4_1:80148614-80148633 Msa0576080:intron 25.0%
!!! TACAAGCAAGTGTAATTTTT+TGG - chr4_1:80149297-80149316 None:intergenic 25.0%
! TTTAGAGAATTCAACATTGT+GGG - chr4_1:80150186-80150205 None:intergenic 25.0%
! ATTTAGAGAATTCAACATTG+TGG - chr4_1:80150187-80150206 None:intergenic 25.0%
!!! AAAAGAACCATTGATTTGAA+AGG - chr4_1:80150295-80150314 None:intergenic 25.0%
!! ATCAATGGTTCTTTTATCAA+AGG + chr4_1:80150300-80150319 Msa0576080:intron 25.0%
!! TCTTCATGTTATTTGTACTT+AGG + chr4_1:80150565-80150584 Msa0576080:intron 25.0%
!! AGCAGGATAATATTTTACTA+TGG + chr4_1:80150595-80150614 Msa0576080:intron 25.0%
! AAACATAGATTGATGCTATT+CGG - chr4_1:80150916-80150935 None:intergenic 25.0%
!! CTATGTTTCTATATTGCTAA+AGG + chr4_1:80150928-80150947 Msa0576080:intron 25.0%
! GAGTAGAATAATTTAATCAG+TGG - chr4_1:80150999-80151018 None:intergenic 25.0%
! CTGATTAAATTATTCTACTC+AGG + chr4_1:80150999-80151018 Msa0576080:intron 25.0%
! GATTAAATTATTCTACTCAG+GGG + chr4_1:80151001-80151020 Msa0576080:intron 25.0%
! TCATTGGATTCTCTTTATAT+TGG + chr4_1:80151168-80151187 Msa0576080:intron 25.0%
!!! AGCTTGTTTCTATAACTTTT+AGG + chr4_1:80151194-80151213 Msa0576080:intron 25.0%
! ATTAAATCCACACTTTCAAA+TGG - chr4_1:80151264-80151283 None:intergenic 25.0%
!! CACAAACATACAAATTTTCA+TGG - chr4_1:80151306-80151325 None:intergenic 25.0%
! ATAAGCATCATGTGAAAAAT+TGG - chr4_1:80151553-80151572 None:intergenic 25.0%
!! ATGTGAGTGTATTTCTAAAA+TGG + chr4_1:80151707-80151726 Msa0576080:intron 25.0%
! TTGTGAAAATATACACATAC+TGG + chr4_1:80151778-80151797 Msa0576080:intron 25.0%
! ATGAAAATTTAACTGCTTAC+AGG + chr4_1:80151942-80151961 Msa0576080:intron 25.0%
! AAAAGAGCAATATAGAATGT+GGG - chr4_1:80152077-80152096 None:intergenic 25.0%
!! TTTTGGATCCATTAAAACTA+CGG + chr4_1:80152093-80152112 Msa0576080:intron 25.0%
!!! TTTTTTCTTCCACAAACAAA+AGG + chr4_1:80152120-80152139 Msa0576080:intron 25.0%
! ATTAAACCATTGAGGATATA+AGG - chr4_1:80152259-80152278 None:intergenic 25.0%
!! GTTTAATCTACAGTTTTCTT+AGG + chr4_1:80152272-80152291 Msa0576080:intron 25.0%
!!! TAAACTGTGTTGATTTTTGT+GGG + chr4_1:80152367-80152386 Msa0576080:intron 25.0%
! CATTAACACAATAAGAAGAT+AGG - chr4_1:80152928-80152947 None:intergenic 25.0%
! TGTTATATTGTTGGTATCAT+TGG - chr4_1:80153080-80153099 None:intergenic 25.0%
! TTTATAGATGAAATAGCCAT+TGG + chr4_1:80153221-80153240 Msa0576080:intron 25.0%
! TGAACCAAACATGATATAAA+AGG + chr4_1:80153432-80153451 Msa0576080:intron 25.0%
! GAACCAAACATGATATAAAA+GGG + chr4_1:80153433-80153452 Msa0576080:intron 25.0%
!! TTTCCCTTTTATATCATGTT+TGG - chr4_1:80153439-80153458 None:intergenic 25.0%
! TGAATGAAAATCCAAAGAAA+TGG + chr4_1:80153585-80153604 Msa0576080:CDS 25.0%
! GAATGAAAATCCAAAGAAAT+GGG + chr4_1:80153586-80153605 Msa0576080:CDS 25.0%
! GACATAAATGCAAACAATAA+GGG - chr4_1:80153776-80153795 None:intergenic 25.0%
! AGACATAAATGCAAACAATA+AGG - chr4_1:80153777-80153796 None:intergenic 25.0%
! AGTTTATCATGTAAAATCCT+AGG - chr4_1:80154014-80154033 None:intergenic 25.0%
!! TTTTACATGATAAACTTCCT+AGG + chr4_1:80154018-80154037 Msa0576080:three_prime_UTR 25.0%
! ATACAATATGAGAAGGTATG+GGG - chr4_1:80145990-80146009 None:intergenic 30.0%
! GATACAATATGAGAAGGTAT+GGG - chr4_1:80145991-80146010 None:intergenic 30.0%
AGATACAATATGAGAAGGTA+TGG - chr4_1:80145992-80146011 None:intergenic 30.0%
! GCTGATTCTGTTATTACAAT+TGG + chr4_1:80146171-80146190 Msa0576080:CDS 30.0%
GATTCTGTTATTACAATTGG+AGG + chr4_1:80146174-80146193 Msa0576080:CDS 30.0%
ATTCAAATACTTAGCAGCAA+CGG - chr4_1:80146229-80146248 None:intergenic 30.0%
! CTTCTTTGGATATAAGTTGA+AGG - chr4_1:80146350-80146369 None:intergenic 30.0%
AGAAAGTAAGGAAAAGGAAA+AGG - chr4_1:80146416-80146435 None:intergenic 30.0%
AAATTGATGCAAAAGAATGG+AGG - chr4_1:80146669-80146688 None:intergenic 30.0%
TGTGGATCATATATAATGTG+TGG - chr4_1:80146769-80146788 None:intergenic 30.0%
!! AAAAAAAAAGTGCTCTTGCA+TGG - chr4_1:80146838-80146857 None:intergenic 30.0%
AGTTGAAAGAATTGGAGATT+GGG - chr4_1:80147087-80147106 None:intergenic 30.0%
ATGAAAGCAGTTGAAAGAAT+TGG - chr4_1:80147095-80147114 None:intergenic 30.0%
! AAAATTTAAGGCCCAAACTA+TGG - chr4_1:80147126-80147145 None:intergenic 30.0%
!!! TATTTTGGTAAAAACGAAGG+AGG + chr4_1:80147224-80147243 Msa0576080:intron 30.0%
TACTTGTTTGACAAACAAGA+TGG - chr4_1:80147363-80147382 None:intergenic 30.0%
!!! ATTTTTTAGGATCTTACCCA+GGG - chr4_1:80147425-80147444 None:intergenic 30.0%
!!! TATTTTTTAGGATCTTACCC+AGG - chr4_1:80147426-80147445 None:intergenic 30.0%
TCAAGAATCCAAACATTCTT+GGG + chr4_1:80147724-80147743 Msa0576080:intron 30.0%
CAAAAATCCAAATCTAGTCA+CGG - chr4_1:80148022-80148041 None:intergenic 30.0%
AAAATCTTCAACACTAAGCA+AGG - chr4_1:80148380-80148399 None:intergenic 30.0%
ACTGATGAAAGGAATAATAG+CGG + chr4_1:80148526-80148545 Msa0576080:intron 30.0%
! AAACTTGGAAAATTTTGTGG+CGG + chr4_1:80148617-80148636 Msa0576080:intron 30.0%
CAAAACAGTAACACAATTGA+AGG - chr4_1:80149055-80149074 None:intergenic 30.0%
! TACAGCTATATTTTGTTGAC+AGG - chr4_1:80149502-80149521 None:intergenic 30.0%
GCTATTTAACCGGATTAAAT+CGG - chr4_1:80149582-80149601 None:intergenic 30.0%
!!! TTCCGCATAGTTTTAAAACT+CGG - chr4_1:80149745-80149764 None:intergenic 30.0%
TTTGACCAACAGGAAATAAA+TGG + chr4_1:80149938-80149957 Msa0576080:intron 30.0%
TTGACCAACAGGAAATAAAT+GGG + chr4_1:80149939-80149958 Msa0576080:intron 30.0%
ACCATATGATATTCTATCTG+TGG + chr4_1:80150157-80150176 Msa0576080:intron 30.0%
ACCACAGATAGAATATCATA+TGG - chr4_1:80150161-80150180 None:intergenic 30.0%
GACACTGAATTACAAAGAAT+TGG - chr4_1:80150391-80150410 None:intergenic 30.0%
ATTCTTTGTAATTCAGTGTC+AGG + chr4_1:80150391-80150410 Msa0576080:intron 30.0%
ACCAATTCTTCATATACTTG+TGG + chr4_1:80150440-80150459 Msa0576080:intron 30.0%
ACCACAAGTATATGAAGAAT+TGG - chr4_1:80150444-80150463 None:intergenic 30.0%
TTATACTCGAAAAATTGGTG+AGG + chr4_1:80150653-80150672 Msa0576080:intron 30.0%
! CAAGTTTGATGATATTGTTG+TGG + chr4_1:80151081-80151100 Msa0576080:CDS 30.0%
ATAAAGAGAATCCAATGAAG+CGG - chr4_1:80151166-80151185 None:intergenic 30.0%
TTGGATTCTCTTTATATTGG+AGG + chr4_1:80151171-80151190 Msa0576080:intron 30.0%
GTAGATGAAAATGTACTTCA+TGG - chr4_1:80151412-80151431 None:intergenic 30.0%
ACTGGAAATTAACAAAACGT+AGG - chr4_1:80151442-80151461 None:intergenic 30.0%
!! TACGTTTTGTTAATTTCCAG+TGG + chr4_1:80151441-80151460 Msa0576080:intron 30.0%
!! ACGTTTTGTTAATTTCCAGT+GGG + chr4_1:80151442-80151461 Msa0576080:intron 30.0%
ACATGATGCTTATACCATTT+AGG + chr4_1:80151560-80151579 Msa0576080:intron 30.0%
! ATACACTCACATTTTGTATG+TGG - chr4_1:80151699-80151718 None:intergenic 30.0%
GGTTCTTATTGAGAAAATCA+AGG + chr4_1:80151799-80151818 Msa0576080:intron 30.0%
TCGAATAAATACCTGTATAC+CGG - chr4_1:80152054-80152073 None:intergenic 30.0%
CAAAAGAGCAATATAGAATG+TGG - chr4_1:80152078-80152097 None:intergenic 30.0%
! CACATTCTATATTGCTCTTT+TGG + chr4_1:80152076-80152095 Msa0576080:intron 30.0%
!!! AAAAGACACCGTAGTTTTAA+TGG - chr4_1:80152104-80152123 None:intergenic 30.0%
!! AATAAATGGCCTTTTGTTTG+TGG - chr4_1:80152132-80152151 None:intergenic 30.0%
! GAATATCTAGTTCACAAACT+TGG + chr4_1:80152163-80152182 Msa0576080:intron 30.0%
GAATATCTTTCCATTTCTTG+TGG + chr4_1:80152226-80152245 Msa0576080:intron 30.0%
TCTTTACCTTATATCCTCAA+TGG + chr4_1:80152250-80152269 Msa0576080:intron 30.0%
AACTGTAGATTAAACCATTG+AGG - chr4_1:80152267-80152286 None:intergenic 30.0%
! ATCTACAGTTTTCTTAGGTA+TGG + chr4_1:80152277-80152296 Msa0576080:intron 30.0%
! TCTACAGTTTTCTTAGGTAT+GGG + chr4_1:80152278-80152297 Msa0576080:intron 30.0%
!! GCTCTAAGGAAATAATATGA+AGG - chr4_1:80152320-80152339 None:intergenic 30.0%
! TTTCCTTAGAGCATCTTTAA+TGG + chr4_1:80152328-80152347 Msa0576080:intron 30.0%
! TTCCTTAGAGCATCTTTAAT+GGG + chr4_1:80152329-80152348 Msa0576080:intron 30.0%
!!! GTAAACTGTGTTGATTTTTG+TGG + chr4_1:80152366-80152385 Msa0576080:intron 30.0%
!!! AAACTGTGTTGATTTTTGTG+GGG + chr4_1:80152368-80152387 Msa0576080:intron 30.0%
! TTTAGGATTTAACCAATCCA+TGG + chr4_1:80152402-80152421 Msa0576080:intron 30.0%
AAAACTACTTAGATCAACCA+TGG - chr4_1:80152422-80152441 None:intergenic 30.0%
!! ATTTTTAACTAGCGTTTTGG+CGG + chr4_1:80152883-80152902 Msa0576080:intron 30.0%
TGCTTAAGTGTATAATTGGA+AGG + chr4_1:80153167-80153186 Msa0576080:intron 30.0%
GAGAAAAAGTTAACCCAAAA+CGG + chr4_1:80153189-80153208 Msa0576080:intron 30.0%
!! TAAAGAAAATAGGCCGTTTT+GGG - chr4_1:80153205-80153224 None:intergenic 30.0%
! ATAAAGAAAATAGGCCGTTT+TGG - chr4_1:80153206-80153225 None:intergenic 30.0%
TATTGTTTATTCCTTCTCAG+CGG + chr4_1:80153533-80153552 Msa0576080:intron 30.0%
TAAATATATCTTGCTCCAAG+AGG + chr4_1:80153800-80153819 Msa0576080:three_prime_UTR 30.0%
AGAATTGATGTAATAAGGTG+AGG - chr4_1:80153912-80153931 None:intergenic 30.0%
TGGGAAGAAAAAGATGAAAA+GGG - chr4_1:80153948-80153967 None:intergenic 30.0%
GCAAGAGATACAATATGAGA+AGG - chr4_1:80145997-80146016 None:intergenic 35.0%
AATTGAGTGGAAACAAAGTG+CGG + chr4_1:80146109-80146128 Msa0576080:CDS 35.0%
TAAGGAAAAGGAAAAGGAGA+AGG - chr4_1:80146410-80146429 None:intergenic 35.0%
AGTGAGAGAAAGTAAGGAAA+AGG - chr4_1:80146422-80146441 None:intergenic 35.0%
GAAAACAGTGAGAGAAAGTA+AGG - chr4_1:80146428-80146447 None:intergenic 35.0%
AAGTGTCTAAAGGAAAGGAA+AGG - chr4_1:80146466-80146485 None:intergenic 35.0%
AAAGAAAAGCTCATCAACCA+AGG + chr4_1:80146498-80146517 Msa0576080:CDS 35.0%
AAGAAAAGCTCATCAACCAA+GGG + chr4_1:80146499-80146518 Msa0576080:CDS 35.0%
!! TTTTGAATTTCACTCTAGGG+TGG + chr4_1:80146686-80146705 Msa0576080:intron 35.0%
!! TTTGAATTTCACTCTAGGGT+GGG + chr4_1:80146687-80146706 Msa0576080:intron 35.0%
TGGAAAAAATGTCTCGTCAT+AGG + chr4_1:80146933-80146952 Msa0576080:intron 35.0%
CAAAGAGGAAAGAAACTTGT+TGG - chr4_1:80147050-80147069 None:intergenic 35.0%
CAGTTGAAAGAATTGGAGAT+TGG - chr4_1:80147088-80147107 None:intergenic 35.0%
GAGCTGTTAAAGAAAAAGGA+GGG - chr4_1:80147392-80147411 None:intergenic 35.0%
AGAGCTGTTAAAGAAAAAGG+AGG - chr4_1:80147393-80147412 None:intergenic 35.0%
!!! TTTTTTAGGATCTTACCCAG+GGG - chr4_1:80147424-80147443 None:intergenic 35.0%
CATTATTATGGTATTGCTGG+TGG - chr4_1:80147647-80147666 None:intergenic 35.0%
ACTTGGAGTGAAATCATAAG+AGG + chr4_1:80147670-80147689 Msa0576080:intron 35.0%
GTCAAGAATCCAAACATTCT+TGG + chr4_1:80147723-80147742 Msa0576080:intron 35.0%
CAAGAATCCAAACATTCTTG+GGG + chr4_1:80147725-80147744 Msa0576080:intron 35.0%
GATAGAACCATAAACAGTCA+AGG + chr4_1:80147747-80147766 Msa0576080:intron 35.0%
AAAGGTTTACTAGAGTCGAA+TGG + chr4_1:80147824-80147843 Msa0576080:intron 35.0%
!! ATATTGGCTTATGACTCTGA+AGG - chr4_1:80147873-80147892 None:intergenic 35.0%
TTCAGAGTCATAAGCCAATA+TGG + chr4_1:80147872-80147891 Msa0576080:intron 35.0%
ATGCTCATTCCTATGTAGTT+TGG + chr4_1:80147950-80147969 Msa0576080:intron 35.0%
AAATTTGCCGTGACTAGATT+TGG + chr4_1:80148012-80148031 Msa0576080:intron 35.0%
CAGGGAAAACAAGTATACAA+AGG - chr4_1:80148046-80148065 None:intergenic 35.0%
! TGCACTCCATCTTCAAATTT+TGG + chr4_1:80148292-80148311 Msa0576080:intron 35.0%
TCAGTGCCAAAATTTGAAGA+TGG - chr4_1:80148301-80148320 None:intergenic 35.0%
! CATTTTCAACGCATAACAAG+TGG + chr4_1:80148400-80148419 Msa0576080:intron 35.0%
! GTGTTTCTGTTCTTCTTCAA+TGG - chr4_1:80148499-80148518 None:intergenic 35.0%
ACACATTAGCTACTGATGAA+AGG + chr4_1:80148515-80148534 Msa0576080:intron 35.0%
! AAGTCCATAGTTTTCAGACT+CGG + chr4_1:80148679-80148698 Msa0576080:intron 35.0%
AAACCGAACAATTATTGACC+CGG - chr4_1:80148861-80148880 None:intergenic 35.0%
! AGTTTAAAACTTGCCTTGAG+TGG + chr4_1:80148974-80148993 Msa0576080:intron 35.0%
! GTTTAAAACTTGCCTTGAGT+GGG + chr4_1:80148975-80148994 Msa0576080:intron 35.0%
!!! CATAGTTTTAAAACTCGGCT+CGG - chr4_1:80149740-80149759 None:intergenic 35.0%
!!! AGCCGAGTTTTAAAACTATG+CGG + chr4_1:80149740-80149759 Msa0576080:intron 35.0%
GCAAAGAAAGACCATAATGT+AGG + chr4_1:80149995-80150014 Msa0576080:intron 35.0%
AAGAAAGACCATAATGTAGG+CGG + chr4_1:80149998-80150017 Msa0576080:intron 35.0%
!! CCATTGATTTGAAAGGAGTT+TGG - chr4_1:80150288-80150307 None:intergenic 35.0%
CCAAACTCCTTTCAAATCAA+TGG + chr4_1:80150285-80150304 Msa0576080:intron 35.0%
CATATACTTGTGGTGTACAA+AGG + chr4_1:80150450-80150469 Msa0576080:intron 35.0%
TACTCTTTATCTTCTGCTGT+TGG + chr4_1:80150498-80150517 Msa0576080:intron 35.0%
!!! TGTACTTAGGCTTTTTTAGC+AGG + chr4_1:80150578-80150597 Msa0576080:intron 35.0%
GAAAAATTGGTGAGGATCTT+GGG + chr4_1:80150661-80150680 Msa0576080:intron 35.0%
AAAAATTGGTGAGGATCTTG+GGG + chr4_1:80150662-80150681 Msa0576080:intron 35.0%
! CTATTGTTGGATCTGAAATC+AGG - chr4_1:80150720-80150739 None:intergenic 35.0%
AGAAGCTTGGTTTCTATTGT+TGG - chr4_1:80150733-80150752 None:intergenic 35.0%
CCACACTTTCAAATGGTATT+CGG - chr4_1:80151257-80151276 None:intergenic 35.0%
!! CGTTTTGTTAATTTCCAGTG+GGG + chr4_1:80151443-80151462 Msa0576080:intron 35.0%
!! GTTTTGTTAATTTCCAGTGG+GGG + chr4_1:80151444-80151463 Msa0576080:intron 35.0%
ATTGAGTAGCTTGAAAGCAA+GGG + chr4_1:80151497-80151516 Msa0576080:CDS 35.0%
ACAAAGTTGTGGAAGTAATC+CGG - chr4_1:80151625-80151644 None:intergenic 35.0%
TACTTCCACAACTTTGTTCA+AGG + chr4_1:80151628-80151647 Msa0576080:CDS 35.0%
! CTAAAATGGTAATGAGCAGA+AGG + chr4_1:80151721-80151740 Msa0576080:intron 35.0%
AAGAACCATAGACATCTTAG+CGG - chr4_1:80151757-80151776 None:intergenic 35.0%
CGAATAAATACCTGTATACC+GGG - chr4_1:80152053-80152072 None:intergenic 35.0%
TTCGTGTGATGCACAATAAA+TGG - chr4_1:80152146-80152165 None:intergenic 35.0%
AATAAATGGCCTTTCGTTTG+TGG - chr4_1:80152195-80152214 None:intergenic 35.0%
TTCGTGTGATGCACAATAAA+TGG - chr4_1:80152146-80152165 None:intergenic 35.0%
AGGTAAAGATCCACAAGAAA+TGG - chr4_1:80152239-80152258 None:intergenic 35.0%
! TCCTTAGAGCATCTTTAATG+GGG + chr4_1:80152330-80152349 Msa0576080:intron 35.0%
TTTAATGGGGTGAACTAAAG+TGG + chr4_1:80152343-80152362 Msa0576080:intron 35.0%
TTAATGGGGTGAACTAAAGT+GGG + chr4_1:80152344-80152363 Msa0576080:intron 35.0%
!! GTGGGGTCAAATTGTTATTT+AGG + chr4_1:80152385-80152404 Msa0576080:intron 35.0%
TACTTAGATCAACCATGGAT+TGG - chr4_1:80152417-80152436 None:intergenic 35.0%
!! TTTTTAACTAGCGTTTTGGC+GGG + chr4_1:80152884-80152903 Msa0576080:intron 35.0%
AATAAGAAGATAGGAGAGAC+GGG - chr4_1:80152919-80152938 None:intergenic 35.0%
CAATAAGAAGATAGGAGAGA+CGG - chr4_1:80152920-80152939 None:intergenic 35.0%
GGGAAAAGAAAAGTTTGATC+AGG + chr4_1:80153453-80153472 Msa0576080:intron 35.0%
GAAAATCCAAAGAAATGGGA+AGG + chr4_1:80153590-80153609 Msa0576080:CDS 35.0%
ATGTTAATGAATCTGTTCCC+AGG + chr4_1:80153708-80153727 Msa0576080:CDS 35.0%
TCTCATACTATACATCCTCT+TGG - chr4_1:80153818-80153837 None:intergenic 35.0%
GTGGGAAGAAAAAGATGAAA+AGG - chr4_1:80153949-80153968 None:intergenic 35.0%
TTTATGGGAGTGATGATTGT+GGG - chr4_1:80153967-80153986 None:intergenic 35.0%
ATTTATGGGAGTGATGATTG+TGG - chr4_1:80153968-80153987 None:intergenic 35.0%
AGATTGAGACTTAAACCTTC+AGG - chr4_1:80154058-80154077 None:intergenic 35.0%
!! CTTTCTGGAATGCAATTGAG+TGG + chr4_1:80146096-80146115 Msa0576080:CDS 40.0%
TGGAAACAAAGTGCGGAAAT+TGG + chr4_1:80146116-80146135 Msa0576080:CDS 40.0%
AACAAGAAGATTGCCAGTGA+GGG - chr4_1:80146307-80146326 None:intergenic 40.0%
CTTCTTGTTGAGCGTTTGAT+TGG + chr4_1:80146318-80146337 Msa0576080:CDS 40.0%
TTGGCAAGTGTCTAAAGGAA+AGG - chr4_1:80146471-80146490 None:intergenic 40.0%
!! TGATGAGCTTTTCTTTGAGG+AGG - chr4_1:80146494-80146513 None:intergenic 40.0%
!!! GGTTGATGAGCTTTTCTTTG+AGG - chr4_1:80146497-80146516 None:intergenic 40.0%
AGGCCATATGTTATTCCTGT+TGG + chr4_1:80146525-80146544 Msa0576080:CDS 40.0%
CCATATGTTATTCCTGTTGG+CGG + chr4_1:80146528-80146547 Msa0576080:CDS 40.0%
!! TTGAATTTCACTCTAGGGTG+GGG + chr4_1:80146688-80146707 Msa0576080:intron 40.0%
! AGAAGGTATACATAGACCCA+AGG - chr4_1:80146804-80146823 None:intergenic 40.0%
TCGATACAAGACTAGACTAG+TGG - chr4_1:80146983-80147002 None:intergenic 40.0%
GAGATTGTTGAGAGACAAAG+AGG - chr4_1:80147065-80147084 None:intergenic 40.0%
TCATCTCCTCATCCATAGTT+TGG + chr4_1:80147111-80147130 Msa0576080:intron 40.0%
CATCTCCTCATCCATAGTTT+GGG + chr4_1:80147112-80147131 Msa0576080:intron 40.0%
GTTCTATCCCCAAGAATGTT+TGG - chr4_1:80147735-80147754 None:intergenic 40.0%
TGTCGATCCTTGACTGTTTA+TGG - chr4_1:80147757-80147776 None:intergenic 40.0%
! CTGAGCACATTTTGCCATAT+TGG - chr4_1:80147889-80147908 None:intergenic 40.0%
TATCCTTGAAGCCTCAAACT+CGG + chr4_1:80147919-80147938 Msa0576080:intron 40.0%
CATATTCTTAGCCGAGTTTG+AGG - chr4_1:80147933-80147952 None:intergenic 40.0%
TTTCTTGTGAGCACAGCAAA+AGG - chr4_1:80147994-80148013 None:intergenic 40.0%
!! AGCATTCAGGTTGACTCATA+CGG - chr4_1:80148192-80148211 None:intergenic 40.0%
! CTTTGAGTTCTTGTCAGTCA+GGG - chr4_1:80148226-80148245 None:intergenic 40.0%
! TCTTTGAGTTCTTGTCAGTC+AGG - chr4_1:80148227-80148246 None:intergenic 40.0%
CACCTTCATTGAGTGAGATA+GGG - chr4_1:80148250-80148269 None:intergenic 40.0%
ACACCTTCATTGAGTGAGAT+AGG - chr4_1:80148251-80148270 None:intergenic 40.0%
!! CTCAATGAAGGTGTTTAGAG+TGG + chr4_1:80148257-80148276 Msa0576080:intron 40.0%
ACACTAAGCAAGGAAGTCTT+TGG - chr4_1:80148370-80148389 None:intergenic 40.0%
AACGCATAACAAGTGGAAAG+AGG + chr4_1:80148407-80148426 Msa0576080:intron 40.0%
AGTTGTCATTCACCCACAAT+AGG + chr4_1:80148468-80148487 Msa0576080:intron 40.0%
TCAATGGCAGAACCTATTGT+GGG - chr4_1:80148483-80148502 None:intergenic 40.0%
TTCAATGGCAGAACCTATTG+TGG - chr4_1:80148484-80148503 None:intergenic 40.0%
!! TTGGAAAATTTTGTGGCGGA+CGG + chr4_1:80148621-80148640 Msa0576080:intron 40.0%
! TTTTGACCGAGTTAACTGCA+TGG - chr4_1:80148778-80148797 None:intergenic 40.0%
AAATTCCAACTTGCCTTGAG+TGG + chr4_1:80148931-80148950 Msa0576080:intron 40.0%
AATTCCAACTTGCCTTGAGT+GGG + chr4_1:80148932-80148951 Msa0576080:intron 40.0%
TGGCAACATCAAATTAACCG+TGG + chr4_1:80149006-80149025 Msa0576080:intron 40.0%
GTGGTGGTTAATACATTCCA+CGG - chr4_1:80149026-80149045 None:intergenic 40.0%
CAGTAACACAATTGAAGGCA+TGG - chr4_1:80149050-80149069 None:intergenic 40.0%
!! AACGAGTCACCGATTTAATC+CGG + chr4_1:80149570-80149589 Msa0576080:intron 40.0%
!! GATGACTCGGTTAGATAACT+CGG - chr4_1:80149626-80149645 None:intergenic 40.0%
AACTATGCGGAAGTCTATTG+TGG + chr4_1:80149753-80149772 Msa0576080:intron 40.0%
GATGTTTGTCATCCTTGGAT+CGG - chr4_1:80149834-80149853 None:intergenic 40.0%
ATCCAAGGATGACAAACATC+TGG + chr4_1:80149834-80149853 Msa0576080:intron 40.0%
ATCCAGATGTTTGTCATCCT+TGG - chr4_1:80149839-80149858 None:intergenic 40.0%
CTGTGTGCAACAAACAACAA+CGG + chr4_1:80149904-80149923 Msa0576080:intron 40.0%
! CAAGAACTTGTTTGACCAAC+AGG + chr4_1:80149928-80149947 Msa0576080:intron 40.0%
GGTACCCATTTATTTCCTGT+TGG - chr4_1:80149946-80149965 None:intergenic 40.0%
! AGGATTTTTATGCAGGAGCA+AGG + chr4_1:80150023-80150042 Msa0576080:intron 40.0%
TGCTCCAAATGTGCTATGTT+CGG + chr4_1:80150211-80150230 Msa0576080:intron 40.0%
TATGTCAGAAGGGGGATATT+TGG + chr4_1:80150238-80150257 Msa0576080:intron 40.0%
ATTTGGACCAGACATAAGCT+AGG + chr4_1:80150255-80150274 Msa0576080:intron 40.0%
CCATATACCTAGCTTATGTC+TGG - chr4_1:80150265-80150284 None:intergenic 40.0%
CCAGACATAAGCTAGGTATA+TGG + chr4_1:80150262-80150281 Msa0576080:intron 40.0%
CGAAAAATTGGTGAGGATCT+TGG + chr4_1:80150660-80150679 Msa0576080:intron 40.0%
! TGGATCTGAAATCAGGACTT+GGG - chr4_1:80150713-80150732 None:intergenic 40.0%
! TTGGATCTGAAATCAGGACT+TGG - chr4_1:80150714-80150733 None:intergenic 40.0%
ATTGAGCTGCAGATTCAAAG+TGG + chr4_1:80151046-80151065 Msa0576080:CDS 40.0%
GATGATATTGTTGTGGCTTG+TGG + chr4_1:80151088-80151107 Msa0576080:CDS 40.0%
AGAATCCAATGAAGCGGAAA+CGG - chr4_1:80151160-80151179 None:intergenic 40.0%
CCGAATACCATTTGAAAGTG+TGG + chr4_1:80151254-80151273 Msa0576080:intron 40.0%
AGCTTAAGCTCACATTCACT+GGG - chr4_1:80151358-80151377 None:intergenic 40.0%
CATTGAGTAGCTTGAAAGCA+AGG + chr4_1:80151496-80151515 Msa0576080:CDS 40.0%
ATGTGAGTCATCTAAGCAGA+AGG - chr4_1:80151527-80151546 None:intergenic 40.0%
CAAAGTTGTGGAAGTAATCC+GGG - chr4_1:80151624-80151643 None:intergenic 40.0%
! TTTGTTCAAGGCTTGCTTGA+CGG + chr4_1:80151640-80151659 Msa0576080:CDS 40.0%
TGTGCCAAGTCATAACATGA+AGG + chr4_1:80151851-80151870 Msa0576080:intron 40.0%
GGAACCTTCATGTTATGACT+TGG - chr4_1:80151858-80151877 None:intergenic 40.0%
GTTCCTAAAACACATGTCTG+TGG + chr4_1:80151873-80151892 Msa0576080:intron 40.0%
! AGACCACAGACATGTGTTTT+AGG - chr4_1:80151879-80151898 None:intergenic 40.0%
GTCTGTGAAACTTCATCATC+TGG + chr4_1:80151895-80151914 Msa0576080:intron 40.0%
ATTTAACTGCTTACAGGCCA+AGG + chr4_1:80151948-80151967 Msa0576080:intron 40.0%
TTTAACTGCTTACAGGCCAA+GGG + chr4_1:80151949-80151968 Msa0576080:intron 40.0%
CTATGCAATGAACACTTCTG+AGG + chr4_1:80151978-80151997 Msa0576080:CDS 40.0%
AAAGAAGTTGCTGAAGCTAC+AGG + chr4_1:80152015-80152034 Msa0576080:CDS 40.0%
! TGGTTGTTTCCACAAACGAA+AGG + chr4_1:80152183-80152202 Msa0576080:intron 40.0%
ACCCCATTAAAGATGCTCTA+AGG - chr4_1:80152334-80152353 None:intergenic 40.0%
TTTATTCCTTCTCAGCGGTA+AGG + chr4_1:80153538-80153557 Msa0576080:intron 40.0%
ATCCAAAGAAATGGGAAGGA+AGG + chr4_1:80153594-80153613 Msa0576080:CDS 40.0%
TTCCTTCCTTCCCATTTCTT+TGG - chr4_1:80153599-80153618 None:intergenic 40.0%
AAGATCCTCTTCGTACATAC+AGG + chr4_1:80153617-80153636 Msa0576080:CDS 40.0%
CCTTGTCATACAATCCTAAG+AGG - chr4_1:80153646-80153665 None:intergenic 40.0%
CCTCTTAGGATTGTATGACA+AGG + chr4_1:80153643-80153662 Msa0576080:CDS 40.0%
TTTCCAATTCCATCTTGCCT+GGG - chr4_1:80153728-80153747 None:intergenic 40.0%
AGGTGAAAGAGAAAGAACCT+AGG - chr4_1:80154038-80154057 None:intergenic 40.0%
GTTCTTTCTCTTTCACCTGA+AGG + chr4_1:80154040-80154059 Msa0576080:three_prime_UTR 40.0%
GAAGCAAGTCTCAACAGTGA+TGG + chr4_1:80145903-80145922 Msa0576080:CDS 45.0%
! TATGAGAAGGTATGGGGTCT+AGG - chr4_1:80145984-80146003 None:intergenic 45.0%
TTCCATCTGTGAATCGGAGT+CGG - chr4_1:80146027-80146046 None:intergenic 45.0%
GGAAGCTTCCATCTGTGAAT+CGG - chr4_1:80146033-80146052 None:intergenic 45.0%
! TCTGTATTTGCTGGCAGGTT+CGG - chr4_1:80146054-80146073 None:intergenic 45.0%
! ACACTTCTGTATTTGCTGGC+AGG - chr4_1:80146059-80146078 None:intergenic 45.0%
TGCCAGCAAATACAGAAGTG+TGG + chr4_1:80146058-80146077 Msa0576080:CDS 45.0%
AGCCACACTTCTGTATTTGC+TGG - chr4_1:80146063-80146082 None:intergenic 45.0%
GCGGAAATTGGAGTTCTTGA+TGG + chr4_1:80146128-80146147 Msa0576080:CDS 45.0%
! AGCGGATTCAGCAATTGCAT+CGG - chr4_1:80146154-80146173 None:intergenic 45.0%
TGGCACGACAGTGATTACTT+TGG - chr4_1:80146203-80146222 None:intergenic 45.0%
GAAGTGCGGAGTATAAGGAA+AGG - chr4_1:80146258-80146277 None:intergenic 45.0%
! GCTTAGAAGTGCGGAGTATA+AGG - chr4_1:80146263-80146282 None:intergenic 45.0%
CAACGAGATGCTTAGAAGTG+CGG - chr4_1:80146272-80146291 None:intergenic 45.0%
CAACAAGAAGATTGCCAGTG+AGG - chr4_1:80146308-80146327 None:intergenic 45.0%
AAAGGAAAAGGAGAAGGAGG+AGG - chr4_1:80146404-80146423 None:intergenic 45.0%
GGAAAAGGAAAAGGAGAAGG+AGG - chr4_1:80146407-80146426 None:intergenic 45.0%
!! GAGCTTTTCTTTGAGGAGGT+TGG - chr4_1:80146490-80146509 None:intergenic 45.0%
AAAAGCTCATCAACCAAGGG+AGG + chr4_1:80146502-80146521 Msa0576080:CDS 45.0%
CCGCCAACAGGAATAACATA+TGG - chr4_1:80146531-80146550 None:intergenic 45.0%
GATCAAACTCTCTCGGAACA+TGG + chr4_1:80146550-80146569 Msa0576080:CDS 45.0%
! CACATCTGAGACTGAACCTT+GGG + chr4_1:80146785-80146804 Msa0576080:intron 45.0%
AAGACTAGACTAGTGGCAAC+AGG - chr4_1:80146976-80146995 None:intergenic 45.0%
TAAGGCCCAAACTATGGATG+AGG - chr4_1:80147120-80147139 None:intergenic 45.0%
GTGTTGAAGCCAAATTCGTG+AGG + chr4_1:80147293-80147312 Msa0576080:intron 45.0%
AGGAAGACTATACTGGAAGC+AGG + chr4_1:80147322-80147341 Msa0576080:intron 45.0%
!! TGACAAACAAGATGGACTGC+AGG - chr4_1:80147355-80147374 None:intergenic 45.0%
!! GGTTTTCGTGCTCTTGTTGT+TGG - chr4_1:80147626-80147645 None:intergenic 45.0%
! TATGACTCTGAAGGAGGAGT+TGG - chr4_1:80147864-80147883 None:intergenic 45.0%
! TTGGCTTATGACTCTGAAGG+AGG - chr4_1:80147870-80147889 None:intergenic 45.0%
TTGTGAGCACAGCAAAAGGA+CGG - chr4_1:80147990-80148009 None:intergenic 45.0%
ATCGGTCAACATTAGCAGCA+GGG - chr4_1:80148064-80148083 None:intergenic 45.0%
!! TTGGTGAGAAGCACTCTGAT+CGG - chr4_1:80148082-80148101 None:intergenic 45.0%
TCTCACCAAGCATGACATGT+TGG + chr4_1:80148093-80148112 Msa0576080:intron 45.0%
TTACGCCAACATGTCATGCT+TGG - chr4_1:80148101-80148120 None:intergenic 45.0%
!! GCATTCAGGTTGACTCATAC+GGG - chr4_1:80148191-80148210 None:intergenic 45.0%
! GGTTGATTGGTTGAGCATTC+AGG - chr4_1:80148205-80148224 None:intergenic 45.0%
! TCTTGTCAGTCAGGGTTGAT+TGG - chr4_1:80148218-80148237 None:intergenic 45.0%
GACCCTATCTCACTCAATGA+AGG + chr4_1:80148245-80148264 Msa0576080:intron 45.0%
TTTGAAGATGGAGTGCAGCA+AGG - chr4_1:80148289-80148308 None:intergenic 45.0%
! CAATGGACTTCAGCTTGAGT+TGG - chr4_1:80148325-80148344 None:intergenic 45.0%
GCATAACAAGTGGAAAGAGG+AGG + chr4_1:80148410-80148429 Msa0576080:intron 45.0%
TGGAAAGAGGAGGTAGATTG+TGG + chr4_1:80148420-80148439 Msa0576080:intron 45.0%
GAGGCGGTAACAAGAAAACT+TGG + chr4_1:80148602-80148621 Msa0576080:intron 45.0%
! CATAGTTTTCAGACTCGGCT+CGG + chr4_1:80148684-80148703 Msa0576080:intron 45.0%
!! ATCCAAAAGTTGGCTCGAAC+CGG - chr4_1:80148752-80148771 None:intergenic 45.0%
! GTTCGAGCCAACTTTTGGAT+CGG + chr4_1:80148752-80148771 Msa0576080:intron 45.0%
GCAGTTAACTCGGTCAAAAC+CGG + chr4_1:80148779-80148798 Msa0576080:intron 45.0%
CTCGGAGGATTGAAGAAAAC+CGG + chr4_1:80148835-80148854 Msa0576080:intron 45.0%
! ACACAATTGAAGGCATGGTG+TGG - chr4_1:80149045-80149064 None:intergenic 45.0%
ATGACTGAACCGGATCAACT+CGG - chr4_1:80149648-80149667 None:intergenic 45.0%
TATGCGGAAGTCTATTGTGG+CGG + chr4_1:80149756-80149775 Msa0576080:intron 45.0%
GGCTAGATCTCATAAGTGAG+TGG - chr4_1:80149813-80149832 None:intergenic 45.0%
TATGAGATCTAGCCGATCCA+AGG + chr4_1:80149819-80149838 Msa0576080:intron 45.0%
GGATGACAAACATCTGGATG+TGG + chr4_1:80149840-80149859 Msa0576080:intron 45.0%
AAACATCTGGATGTGGTTGC+TGG + chr4_1:80149847-80149866 Msa0576080:intron 45.0%
ATGGGTACCAAATGTCCCAA+AGG + chr4_1:80149957-80149976 Msa0576080:intron 45.0%
TGGGTACCAAATGTCCCAAA+GGG + chr4_1:80149958-80149977 Msa0576080:intron 45.0%
GTCTTTCTTTGCTGCCTTCT+TGG - chr4_1:80149987-80150006 None:intergenic 45.0%
AATCCTAGCCGCCTACATTA+TGG - chr4_1:80150009-80150028 None:intergenic 45.0%
TCAGGAGCTCCTGATTTAGA+GGG - chr4_1:80150049-80150068 None:intergenic 45.0%
ATCAGGAGCTCCTGATTTAG+AGG - chr4_1:80150050-80150069 None:intergenic 45.0%
CACACCGAACATAGCACATT+TGG - chr4_1:80150218-80150237 None:intergenic 45.0%
!! TGTTCGGTGTGTATGTCAGA+AGG + chr4_1:80150227-80150246 Msa0576080:intron 45.0%
!! GTTCGGTGTGTATGTCAGAA+GGG + chr4_1:80150228-80150247 Msa0576080:intron 45.0%
! TTCGGTGTGTATGTCAGAAG+GGG + chr4_1:80150229-80150248 Msa0576080:intron 45.0%
AGGAATGTATACTCTGCGAC+TGG + chr4_1:80150320-80150339 Msa0576080:intron 45.0%
! ATATTGTTGTGGCTTGTGGC+AGG + chr4_1:80151092-80151111 Msa0576080:CDS 45.0%
GCTTAAGCTCACATTCACTG+GGG - chr4_1:80151357-80151376 None:intergenic 45.0%
CAGCTTAAGCTCACATTCAC+TGG - chr4_1:80151359-80151378 None:intergenic 45.0%
!! ACAATTGCCGGTTTAGCACT+GGG + chr4_1:80151468-80151487 Msa0576080:CDS 45.0%
TGATGAACCCAGTGCTAAAC+CGG - chr4_1:80151478-80151497 None:intergenic 45.0%
ATTCTCCGTTTGTGATGACC+CGG + chr4_1:80151603-80151622 Msa0576080:CDS 45.0%
GTAATCCGGGTCATCACAAA+CGG - chr4_1:80151611-80151630 None:intergenic 45.0%
GCAAGCCTTGAACAAAGTTG+TGG - chr4_1:80151636-80151655 None:intergenic 45.0%
TCTGACCGCTAAGATGTCTA+TGG + chr4_1:80151749-80151768 Msa0576080:intron 45.0%
CACAAGCACATTATGTCTGC+TGG - chr4_1:80151833-80151852 None:intergenic 45.0%
!! TACAGGTGTTGTTCTTGACC+CGG + chr4_1:80152032-80152051 Msa0576080:CDS 45.0%
TTGTTCTTGACCCGGTATAC+AGG + chr4_1:80152040-80152059 Msa0576080:CDS 45.0%
ATCCTCTTCGTACATACAGG+TGG + chr4_1:80153620-80153639 Msa0576080:CDS 45.0%
TATGACAAGGTCGATCAGCT+GGG + chr4_1:80153656-80153675 Msa0576080:CDS 45.0%
CTTTCCAATTCCATCTTGCC+TGG - chr4_1:80153729-80153748 None:intergenic 45.0%
!!! TTGATTTTAATTAAAATTAT+AGG + chr4_1:80152997-80153016 Msa0576080:intron 5.0%
!! ACTATAATTTATATTAAAAA+AGG - chr4_1:80154172-80154191 None:intergenic 5.0%
GCAAGTCTCAACAGTGATGG+CGG + chr4_1:80145906-80145925 Msa0576080:CDS 50.0%
CAAGTCTCAACAGTGATGGC+GGG + chr4_1:80145907-80145926 Msa0576080:CDS 50.0%
! AAGTCTCAACAGTGATGGCG+GGG + chr4_1:80145908-80145927 Msa0576080:CDS 50.0%
AGCCATACACAGCTCCTTCA+TGG + chr4_1:80145950-80145969 Msa0576080:CDS 50.0%
GCCATACACAGCTCCTTCAT+GGG + chr4_1:80145951-80145970 Msa0576080:CDS 50.0%
TCTAGGTAGGATGCCCATGA+AGG - chr4_1:80145967-80145986 None:intergenic 50.0%
! AGAAGGTATGGGGTCTAGGT+AGG - chr4_1:80145980-80145999 None:intergenic 50.0%
GTGAATCGGAGTCGGAAGAT+GGG - chr4_1:80146019-80146038 None:intergenic 50.0%
TGTGAATCGGAGTCGGAAGA+TGG - chr4_1:80146020-80146039 None:intergenic 50.0%
TTCCGACTCCGATTCACAGA+TGG + chr4_1:80146022-80146041 Msa0576080:CDS 50.0%
ATACTTAGCAGCAACGGCAG+TGG - chr4_1:80146223-80146242 None:intergenic 50.0%
AGAAGATTGCCAGTGAGGGT+GGG - chr4_1:80146303-80146322 None:intergenic 50.0%
AAGAAGATTGCCAGTGAGGG+TGG - chr4_1:80146304-80146323 None:intergenic 50.0%
GGAGGTTGGCAAGTGTCTAA+AGG - chr4_1:80146476-80146495 None:intergenic 50.0%
TAACATATGGCCTCCTCCCT+TGG - chr4_1:80146518-80146537 None:intergenic 50.0%
AGAGAGTTTGATCCGCCAAC+AGG - chr4_1:80146543-80146562 None:intergenic 50.0%
! GTTGGCGGATCAAACTCTCT+CGG + chr4_1:80146543-80146562 Msa0576080:CDS 50.0%
!! ATTTCACTCTAGGGTGGGGT+AGG + chr4_1:80146692-80146711 Msa0576080:intron 50.0%
CCAAGGTTCAGTCTCAGATG+TGG - chr4_1:80146787-80146806 None:intergenic 50.0%
! CCACATCTGAGACTGAACCT+TGG + chr4_1:80146784-80146803 Msa0576080:intron 50.0%
GCATGGAGACTTAGAGGAGA+AGG - chr4_1:80146821-80146840 None:intergenic 50.0%
GCTCTTGCATGGAGACTTAG+AGG - chr4_1:80146827-80146846 None:intergenic 50.0%
TGAAGCCAAATTCGTGAGGC+AGG + chr4_1:80147297-80147316 Msa0576080:intron 50.0%
GCAGGAGAGGAAGACTATAC+TGG + chr4_1:80147315-80147334 Msa0576080:intron 50.0%
! TTTAGGATCTTACCCAGGGG+AGG - chr4_1:80147421-80147440 None:intergenic 50.0%
!! TCGTGCTCTTGTTGTTGGCT+CGG - chr4_1:80147621-80147640 None:intergenic 50.0%
! TAGCCGAGTTTGAGGCTTCA+AGG - chr4_1:80147925-80147944 None:intergenic 50.0%
TGTGAGCACAGCAAAAGGAC+GGG - chr4_1:80147989-80148008 None:intergenic 50.0%
GATCGGTCAACATTAGCAGC+AGG - chr4_1:80148065-80148084 None:intergenic 50.0%
AGGTAGATTGTGGACCCTGT+TGG + chr4_1:80148430-80148449 Msa0576080:intron 50.0%
!!! TGTTTTGACCTCCGAAGACG+AGG + chr4_1:80148583-80148602 Msa0576080:intron 50.0%
TCTTGTTACCGCCTCGTCTT+CGG - chr4_1:80148597-80148616 None:intergenic 50.0%
!!! AAAATTTTGTGGCGGACGGC+AGG + chr4_1:80148625-80148644 Msa0576080:intron 50.0%
!!! AAATTTTGTGGCGGACGGCA+GGG + chr4_1:80148626-80148645 Msa0576080:intron 50.0%
CGAGCCGAGTCTGAAAACTA+TGG - chr4_1:80148686-80148705 None:intergenic 50.0%
TGCATGGCCGATCCAAAAGT+TGG - chr4_1:80148762-80148781 None:intergenic 50.0%
GATCGGCCATGCAGTTAACT+CGG + chr4_1:80148769-80148788 Msa0576080:intron 50.0%
CGGTCAAAACCGGTCAAACT+CGG + chr4_1:80148789-80148808 Msa0576080:intron 50.0%
GAGGATTGAAGAAAACCGGC+CGG + chr4_1:80148839-80148858 Msa0576080:intron 50.0%
AGGATTGAAGAAAACCGGCC+GGG + chr4_1:80148840-80148859 Msa0576080:intron 50.0%
CGAACAATTATTGACCCGGC+CGG - chr4_1:80148857-80148876 None:intergenic 50.0%
CGGCCGGGTCAATAATTGTT+CGG + chr4_1:80148855-80148874 Msa0576080:intron 50.0%
GATTCCCACTCAAGGCAAGT+TGG - chr4_1:80148939-80148958 None:intergenic 50.0%
! CAATTGAAGGCATGGTGTGG+TGG - chr4_1:80149042-80149061 None:intergenic 50.0%
GTTGATCCGGTTCAGTCATG+CGG + chr4_1:80149649-80149668 Msa0576080:intron 50.0%
TGGTCGAACCACTGAGTCAT+TGG - chr4_1:80149680-80149699 None:intergenic 50.0%
GTACTGGGTTACTGGGTCAA+TGG - chr4_1:80149700-80149719 None:intergenic 50.0%
CAATGGCTGACAGCGGTAAA+CGG + chr4_1:80149878-80149897 Msa0576080:intron 50.0%
!! TGGTAGCCCTTTGGGACATT+TGG - chr4_1:80149967-80149986 None:intergenic 50.0%
! TGCCTTCTTGGTAGCCCTTT+GGG - chr4_1:80149975-80149994 None:intergenic 50.0%
AGACCATAATGTAGGCGGCT+AGG + chr4_1:80150003-80150022 Msa0576080:intron 50.0%
! GGCGGCTAGGATTTTTATGC+AGG + chr4_1:80150016-80150035 Msa0576080:intron 50.0%
TCGGTGTGTATGTCAGAAGG+GGG + chr4_1:80150230-80150249 Msa0576080:intron 50.0%
TCTACTCAGGGGCTACATAG+AGG + chr4_1:80151012-80151031 Msa0576080:intron 50.0%
GGGCTACATAGAGGCAGTTA+GGG + chr4_1:80151021-80151040 Msa0576080:CDS 50.0%
ACCATCCGTTTCCGCTTCAT+TGG + chr4_1:80151152-80151171 Msa0576080:intron 50.0%
TCCAATGAAGCGGAAACGGA+TGG - chr4_1:80151156-80151175 None:intergenic 50.0%
CTCACATTCACTGGGGAGTT+TGG - chr4_1:80151350-80151369 None:intergenic 50.0%
!! CACAATTGCCGGTTTAGCAC+TGG + chr4_1:80151467-80151486 Msa0576080:CDS 50.0%
! ACCATTTAGGTGCTACCTGC+AGG + chr4_1:80151573-80151592 Msa0576080:intron 50.0%
ACCTGCAGGTAGCACCTAAA+TGG - chr4_1:80151577-80151596 None:intergenic 50.0%
!! TTGCTTGACGGACTCAAAGC+TGG + chr4_1:80151652-80151671 Msa0576080:CDS 50.0%
CATTGCATAGCCAAGACCCT+TGG - chr4_1:80151968-80151987 None:intergenic 50.0%
GTACATACAGGTGGCCTCTT+AGG + chr4_1:80153629-80153648 Msa0576080:CDS 50.0%
GTATGACAAGGTCGATCAGC+TGG + chr4_1:80153655-80153674 Msa0576080:CDS 50.0%
GATCAGCTGGGTTCCTTTGT+GGG + chr4_1:80153668-80153687 Msa0576080:CDS 50.0%
ATCAGCTGGGTTCCTTTGTG+GGG + chr4_1:80153669-80153688 Msa0576080:CDS 50.0%
TGGGTTCCTTTGTGGGGAAT+TGG + chr4_1:80153675-80153694 Msa0576080:CDS 50.0%
TCGTTGCCAATTCCCCACAA+AGG - chr4_1:80153684-80153703 None:intergenic 50.0%
TGTGGGGAATTGGCAACGAA+TGG + chr4_1:80153685-80153704 Msa0576080:CDS 50.0%
GAATCTGTTCCCAGGCAAGA+TGG + chr4_1:80153716-80153735 Msa0576080:CDS 50.0%
GTTCCCAGGCAAGATGGAAT+TGG + chr4_1:80153722-80153741 Msa0576080:CDS 50.0%
GCCCATGAAGGAGCTGTGTA+TGG - chr4_1:80145955-80145974 None:intergenic 55.0%
CTGAAGCGCGACGATCTTTC+TGG + chr4_1:80146081-80146100 Msa0576080:CDS 55.0%
AGCTCATCAACCAAGGGAGG+AGG + chr4_1:80146505-80146524 Msa0576080:CDS 55.0%
CCTCTCCTGCCTCACGAATT+TGG - chr4_1:80147305-80147324 None:intergenic 55.0%
CCAAATTCGTGAGGCAGGAG+AGG + chr4_1:80147302-80147321 Msa0576080:intron 55.0%
ACAGCTCTATTGTCCTCCCC+TGG + chr4_1:80147405-80147424 Msa0576080:intron 55.0%
CAGCTCTATTGTCCTCCCCT+GGG + chr4_1:80147406-80147425 Msa0576080:intron 55.0%
GTGAGCACAGCAAAAGGACG+GGG - chr4_1:80147988-80148007 None:intergenic 55.0%
TTCCTCTGTGCGCACCAACA+GGG - chr4_1:80148447-80148466 None:intergenic 55.0%
TTTGACCTCCGAAGACGAGG+CGG + chr4_1:80148586-80148605 Msa0576080:intron 55.0%
ATCACATGGATGCCACGCGT+CGG + chr4_1:80148650-80148669 Msa0576080:intron 55.0%
!!! TTTTCAGACTCGGCTCGGAC+CGG + chr4_1:80148689-80148708 Msa0576080:intron 55.0%
!!! AGCCGGTTCGAGCCAACTTT+TGG + chr4_1:80148747-80148766 Msa0576080:intron 55.0%
CGGCCAGAACCGGATTAAAC+CGG + chr4_1:80148809-80148828 Msa0576080:intron 55.0%
!! TCGCCGGTTTAATCCGGTTC+TGG - chr4_1:80148815-80148834 None:intergenic 55.0%
ACCGGATTAAACCGGCGACT+CGG + chr4_1:80148817-80148836 Msa0576080:intron 55.0%
!! TCCGAGTCGCCGGTTTAATC+CGG - chr4_1:80148821-80148840 None:intergenic 55.0%
TCTTCAATCCTCCGAGTCGC+CGG - chr4_1:80148831-80148850 None:intergenic 55.0%
GCCTTGAGTGGGAATCGAAC+TGG + chr4_1:80148943-80148962 Msa0576080:intron 55.0%
GCCAGTTCGATTCCCACTCA+AGG - chr4_1:80148947-80148966 None:intergenic 55.0%
GCCTTGAGTGGGAATCGAAC+TGG + chr4_1:80148943-80148962 Msa0576080:intron 55.0%
GCCAGTTCGATTCCCACTCA+AGG - chr4_1:80148947-80148966 None:intergenic 55.0%
CCGGATCAACTCGGATGACT+CGG - chr4_1:80149639-80149658 None:intergenic 55.0%
!! CCGAGTCATCCGAGTTGATC+CGG + chr4_1:80149636-80149655 Msa0576080:intron 55.0%
GTCGAACCGCATGACTGAAC+CGG - chr4_1:80149658-80149677 None:intergenic 55.0%
CGGTTCGACCAATGACTCAG+TGG + chr4_1:80149669-80149688 Msa0576080:intron 55.0%
TCTATTGTGGCGGTGCGTGT+TGG + chr4_1:80149766-80149785 Msa0576080:intron 55.0%
CTATTGTGGCGGTGCGTGTT+GGG + chr4_1:80149767-80149786 Msa0576080:intron 55.0%
TATTGTGGCGGTGCGTGTTG+GGG + chr4_1:80149768-80149787 Msa0576080:intron 55.0%
! TGCGTGTTGGGGTGTCTACT+GGG + chr4_1:80149779-80149798 Msa0576080:intron 55.0%
GCGAAAGCAATGGCTGACAG+CGG + chr4_1:80149871-80149890 Msa0576080:intron 55.0%
GTCCCAAAGGGCTACCAAGA+AGG + chr4_1:80149970-80149989 Msa0576080:intron 55.0%
! CTGCCTTCTTGGTAGCCCTT+TGG - chr4_1:80149976-80149995 None:intergenic 55.0%
GGAGCAAGGCCCTCTAAATC+AGG + chr4_1:80150037-80150056 Msa0576080:intron 55.0%
TTGGTGAGGATCTTGGGGAC+TGG + chr4_1:80150667-80150686 Msa0576080:intron 55.0%
CCAAGCTTCTTGCCACCAAG+CGG + chr4_1:80150743-80150762 Msa0576080:intron 55.0%
CAAGCTTCTTGCCACCAAGC+GGG + chr4_1:80150744-80150763 Msa0576080:intron 55.0%
ATCAAGCAGATCCCGCTTGG+TGG - chr4_1:80150758-80150777 None:intergenic 55.0%
ACGATCAAGCAGATCCCGCT+TGG - chr4_1:80150761-80150780 None:intergenic 55.0%
GGGGCTACATAGAGGCAGTT+AGG + chr4_1:80151020-80151039 Msa0576080:intron 55.0%
GCGGAAACGGATGGTTGCTA+AGG - chr4_1:80151147-80151166 None:intergenic 55.0%
TGCTTACAGGCCAAGGGTCT+TGG + chr4_1:80151955-80151974 Msa0576080:intron 55.0%
GAAGATAGGAGAGACGGGCA+CGG - chr4_1:80152914-80152933 None:intergenic 55.0%
AAGCAGCCTTACCGCTGAGA+AGG - chr4_1:80153547-80153566 None:intergenic 55.0%
GGCCACCTGTATGTACGAAG+AGG - chr4_1:80153625-80153644 None:intergenic 55.0%
CGATCAGCTGGGTTCCTTTG+TGG + chr4_1:80153667-80153686 Msa0576080:CDS 55.0%
GACCAAGATCCCACCCTCAC+TGG + chr4_1:80146291-80146310 Msa0576080:CDS 60.0%
TGCCAGTGAGGGTGGGATCT+TGG - chr4_1:80146296-80146315 None:intergenic 60.0%
CTTCCTCTGTGCGCACCAAC+AGG - chr4_1:80148448-80148467 None:intergenic 60.0%
TGTTACCGCCTCGTCTTCGG+AGG - chr4_1:80148594-80148613 None:intergenic 60.0%
TGGATGCCACGCGTCGGAAA+CGG + chr4_1:80148656-80148675 Msa0576080:intron 60.0%
! CGGTTCTGGCCGAGTTTGAC+CGG - chr4_1:80148801-80148820 None:intergenic 60.0%
CGGTCAAACTCGGCCAGAAC+CGG + chr4_1:80148799-80148818 Msa0576080:intron 60.0%
! GGATTAAACCGGCGACTCGG+AGG + chr4_1:80148820-80148839 Msa0576080:intron 60.0%
!! GGCAGGGGTACTGGGTTACT+GGG - chr4_1:80149707-80149726 None:intergenic 60.0%
!! ATCGACTCGGCAGGGGTACT+GGG - chr4_1:80149715-80149734 None:intergenic 60.0%
!! ACTCGGCTCGGTCATCGACT+CGG - chr4_1:80149728-80149747 None:intergenic 60.0%
! GTGCGTGTTGGGGTGTCTAC+TGG + chr4_1:80149778-80149797 Msa0576080:intron 60.0%
! TTGGGGTGTCTACTGGGCTC+TGG + chr4_1:80149785-80149804 Msa0576080:intron 60.0%
! TGGGGTGTCTACTGGGCTCT+GGG + chr4_1:80149786-80149805 Msa0576080:intron 60.0%
GGTTGCTGGCGCGAAAGCAA+TGG + chr4_1:80149861-80149880 Msa0576080:intron 60.0%
TGGCTGACAGCGGTAAACGG+TGG + chr4_1:80149881-80149900 Msa0576080:intron 60.0%
! CCGCTTGGTGGCAAGAAGCT+TGG - chr4_1:80150746-80150765 None:intergenic 60.0%
! TCCAGTGGGGGCACAATTGC+CGG + chr4_1:80151456-80151475 Msa0576080:intron 60.0%
CGGAGAATGCATGCACCTGC+AGG - chr4_1:80151591-80151610 None:intergenic 60.0%
GACCCTGTTGGTGCGCACAG+AGG + chr4_1:80148442-80148461 Msa0576080:intron 65.0%
GGACTTCCGTTTCCGACGCG+TGG - chr4_1:80148665-80148684 None:intergenic 65.0%
GGACCGGTTGGACCGTGAAC+CGG + chr4_1:80148718-80148737 Msa0576080:intron 65.0%
!! CCACCGGTTCACGGTCCAAC+CGG - chr4_1:80148724-80148743 None:intergenic 65.0%
CGGTTGGACCGTGAACCGGT+GGG + chr4_1:80148722-80148741 Msa0576080:intron 65.0%
!! CCGGCTTACCCACCGGTTCA+CGG - chr4_1:80148733-80148752 None:intergenic 65.0%
CCGTGAACCGGTGGGTAAGC+CGG + chr4_1:80148730-80148749 Msa0576080:intron 65.0%
! GCTCGAACCGGCTTACCCAC+CGG - chr4_1:80148740-80148759 None:intergenic 65.0%
!! CGGCAGGGGTACTGGGTTAC+TGG - chr4_1:80149708-80149727 None:intergenic 65.0%
!! CATCGACTCGGCAGGGGTAC+TGG - chr4_1:80149716-80149735 None:intergenic 65.0%
!! CTCGGTCATCGACTCGGCAG+GGG - chr4_1:80149722-80149741 None:intergenic 65.0%
!! GCTCGGTCATCGACTCGGCA+GGG - chr4_1:80149723-80149742 None:intergenic 65.0%
ACCGGCAATTGTGCCCCCAC+TGG - chr4_1:80151460-80151479 None:intergenic 65.0%
! GCGGACGGCAGGGCATCACA+TGG + chr4_1:80148636-80148655 Msa0576080:intron 70.0%
CACGGTCCAACCGGTCCGAC+CGG - chr4_1:80148715-80148734 None:intergenic 70.0%
CCGGTTGGACCGTGAACCGG+TGG + chr4_1:80148721-80148740 Msa0576080:intron 70.0%
!! GGCTCGGTCATCGACTCGGC+AGG - chr4_1:80149724-80149743 None:intergenic 70.0%
!! CAGACTCGGCTCGGACCGGC+CGG + chr4_1:80148693-80148712 Msa0576080:intron 75.0%
GTCCAACCGGTCCGACCGGC+CGG - chr4_1:80148711-80148730 None:intergenic 75.0%
!!! CTCGGCTCGGACCGGCCGGT+CGG + chr4_1:80148697-80148716 Msa0576080:intron 80.0%
! CTCGGACCGGCCGGTCGGAC+CGG + chr4_1:80148702-80148721 Msa0576080:intron 80.0%
! GACCGGCCGGTCGGACCGGT+TGG + chr4_1:80148706-80148725 Msa0576080:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80145869 80154201 80145869 ID=Msa0576080;Name=Msa0576080
chr4_1 mRNA 80145869 80154201 80145869 ID=Msa0576080-mRNA-1;Parent=Msa0576080;Name=Msa0576080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=17|1|1|1|1|1|7|444|388
chr4_1 exon 80145869 80146392 80145869 ID=Msa0576080-mRNA-1:exon:28596;Parent=Msa0576080-mRNA-1
chr4_1 exon 80146480 80146571 80146480 ID=Msa0576080-mRNA-1:exon:28597;Parent=Msa0576080-mRNA-1
chr4_1 exon 80151021 80151113 80151021 ID=Msa0576080-mRNA-1:exon:28598;Parent=Msa0576080-mRNA-1
chr4_1 exon 80151461 80151518 80151461 ID=Msa0576080-mRNA-1:exon:28599;Parent=Msa0576080-mRNA-1
chr4_1 exon 80151595 80151708 80151595 ID=Msa0576080-mRNA-1:exon:28600;Parent=Msa0576080-mRNA-1
chr4_1 exon 80151964 80152061 80151964 ID=Msa0576080-mRNA-1:exon:28601;Parent=Msa0576080-mRNA-1
chr4_1 exon 80153553 80154201 80153553 ID=Msa0576080-mRNA-1:exon:28602;Parent=Msa0576080-mRNA-1
chr4_1 five_prime_UTR 80145869 80145885 80145869 ID=Msa0576080-mRNA-1:five_prime_utr;Parent=Msa0576080-mRNA-1
chr4_1 CDS 80145886 80146392 80145886 ID=Msa0576080-mRNA-1:cds;Parent=Msa0576080-mRNA-1
chr4_1 CDS 80146480 80146571 80146480 ID=Msa0576080-mRNA-1:cds;Parent=Msa0576080-mRNA-1
chr4_1 CDS 80151021 80151113 80151021 ID=Msa0576080-mRNA-1:cds;Parent=Msa0576080-mRNA-1
chr4_1 CDS 80151461 80151518 80151461 ID=Msa0576080-mRNA-1:cds;Parent=Msa0576080-mRNA-1
chr4_1 CDS 80151595 80151708 80151595 ID=Msa0576080-mRNA-1:cds;Parent=Msa0576080-mRNA-1
chr4_1 CDS 80151964 80152061 80151964 ID=Msa0576080-mRNA-1:cds;Parent=Msa0576080-mRNA-1
chr4_1 CDS 80153553 80153757 80153553 ID=Msa0576080-mRNA-1:cds;Parent=Msa0576080-mRNA-1
chr4_1 three_prime_UTR 80153758 80154201 80153758 ID=Msa0576080-mRNA-1:three_prime_utr;Parent=Msa0576080-mRNA-1
Gene Sequence

>Msa0576080

ATGTATGGTCATCTGAAGAAGCAAGTCTCAACAGTGATGGCGGGGTTTGAGTTTCTGAGTGTGAAGCCATACACAGCTCCTTCATGGGCATCCTACCTAGACCCCATACCTTCTCATATTGTATCTCTTGCCCATCTTCCGACTCCGATTCACAGATGGAAGCTTCCGAACCTGCCAGCAAATACAGAAGTGTGGCTGAAGCGCGACGATCTTTCTGGAATGCAATTGAGTGGAAACAAAGTGCGGAAATTGGAGTTCTTGATGGCCGATGCAATTGCTGAATCCGCTGATTCTGTTATTACAATTGGAGGCATCCAAAGTAATCACTGTCGTGCCACTGCCGTTGCTGCTAAGTATTTGAATCTCGATCCTTTCCTTATACTCCGCACTTCTAAGCATCTCGTTGACCAAGATCCCACCCTCACTGGCAATCTTCTTGTTGAGCGTTTGATTGGAGCTCACCTTCAACTTATATCCAAAGAAGAATATTCACAAATTGGAAGTGTCACACTTGCCAACCTCCTCAAAGAAAAGCTCATCAACCAAGGGAGGAGGCCATATGTTATTCCTGTTGGCGGATCAAACTCTCTCGGAACATGGGGCTACATAGAGGCAGTTAGGGAGATTGAGCTGCAGATTCAAAGTGGAACAAGCAATGTCAAGTTTGATGATATTGTTGTGGCTTGTGGCAGTGGGGGCACAATTGCCGGTTTAGCACTGGGTTCATCATTGAGTAGCTTGAAAGCAAGGGTGCATGCATTCTCCGTTTGTGATGACCCGGATTACTTCCACAACTTTGTTCAAGGCTTGCTTGACGGACTCAAAGCTGGTGTTAGCTCTAGAGATATTGTCCACATACAAAATGCCAAGGGTCTTGGCTATGCAATGAACACTTCTGAGGAGCTTAGTTTTGTAAAAGAAGTTGCTGAAGCTACAGGTGTTGTTCTTGACCCGGTATACAGCGGTAAGGCTGCTTATGCAATGCTGAAAGATATGAATGAAAATCCAAAGAAATGGGAAGGAAGGAAGATCCTCTTCGTACATACAGGTGGCCTCTTAGGATTGTATGACAAGGTCGATCAGCTGGGTTCCTTTGTGGGGAATTGGCAACGAATGGATGTTAATGAATCTGTTCCCAGGCAAGATGGAATTGGAAAGATGTTCTAG
Protein sequence

>Msa0576080

MYGHLKKQVSTVMAGFEFLSVKPYTAPSWASYLDPIPSHIVSLAHLPTPIHRWKLPNLPANTEVWLKRDDLSGMQLSGNKVRKLEFLMADAIAESADSVITIGGIQSNHCRATAVAAKYLNLDPFLILRTSKHLVDQDPTLTGNLLVERLIGAHLQLISKEEYSQIGSVTLANLLKEKLINQGRRPYVIPVGGSNSLGTWGYIEAVREIELQIQSGTSNVKFDDIVVACGSGGTIAGLALGSSLSSLKARVHAFSVCDDPDYFHNFVQGLLDGLKAGVSSRDIVHIQNAKGLGYAMNTSEELSFVKEVAEATGVVLDPVYSGKAAYAMLKDMNENPKKWEGRKILFVHTGGLLGLYDKVDQLGSFVGNWQRMDVNESVPRQDGIGKMF*