AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0195810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0195810 MtrunA17_Chr2g0287161 97.333 375 10 0 1 375 1 375 0.0 736
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0195810 AT3G21580.1 65.738 359 118 2 17 375 38 391 5.61e-156 444

Find 109 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACTGGATAATCGAATTT+TGG 0.104689 2_1:+12777743 None:intergenic
ACTTGACTTTGCTTTCAATT+TGG 0.164659 2_1:-12776461 Msa0195810:CDS
TAAATCTCAATGACAGTAAA+AGG 0.188453 2_1:+12775664 None:intergenic
CCTTTCCTCGTAAAGGTTAA+TGG 0.195689 2_1:+12775961 None:intergenic
CTTGACTTTGCTTTCAATTT+GGG 0.197389 2_1:-12776460 Msa0195810:CDS
TATTAATTCAATACAGCTTT+TGG 0.206332 2_1:+12772531 None:intergenic
GAAGCTTTGATTCTTATAAT+TGG 0.239794 2_1:+12777683 None:intergenic
TATTGATCCACGAGTTAAAT+TGG 0.247372 2_1:-12777513 Msa0195810:intron
TTATAATTGGATTTCTCTTC+AGG 0.247563 2_1:+12777696 None:intergenic
TTCTTGTCAGAATCATCTTT+TGG 0.254029 2_1:-12773177 Msa0195810:CDS
CTCACCTTCCAAGTATTTCT+TGG 0.254417 2_1:+12776432 None:intergenic
TAACCATGCCACTTTCCTTT+TGG 0.256389 2_1:-12777798 Msa0195810:CDS
GCAGGTTCTTGACATGGTTT+TGG 0.276245 2_1:-12772898 Msa0195810:intron
TCGCATATAATTATGCGATT+TGG 0.287874 2_1:-12776495 Msa0195810:CDS
TTGTGTCTCGTAGGGTAAAT+TGG 0.290091 2_1:-12774381 Msa0195810:CDS
AATCTTCCTATATCTTTAAC+AGG 0.301642 2_1:-12776012 Msa0195810:CDS
GTTAAAGATATAGGAAGATT+TGG 0.313120 2_1:+12776015 None:intergenic
AAAGCTTCAAAAGATGATAA+TGG 0.324391 2_1:-12777668 Msa0195810:CDS
GGAATCCACTTAGACCAATT+TGG 0.327874 2_1:+12777638 None:intergenic
CAAAGTTGAAAACAGATGTT+TGG 0.330048 2_1:-12772823 Msa0195810:three_prime_UTR
TTTCTGTTTATAGGATCAAT+TGG 0.339543 2_1:-12776148 Msa0195810:intron
TTATGTAAACAATGTATGTT+TGG 0.367328 2_1:-12772441 Msa0195810:three_prime_UTR
ATGTGTTAGTGTTGTAAATT+CGG 0.368515 2_1:-12772661 Msa0195810:three_prime_UTR
CTACATAGAATCTTTCTTCA+TGG 0.369788 2_1:-12772866 Msa0195810:three_prime_UTR
AATGCAGATGCTAGTTGTTC+AGG 0.374990 2_1:+12775747 None:intergenic
ATAATTATATGCGACCTTGC+CGG 0.385006 2_1:+12776504 None:intergenic
GCATTGTTATTCATAACATT+AGG 0.385857 2_1:-12776105 Msa0195810:CDS
TCATATGTAATCTCAAAGTT+AGG 0.391690 2_1:-12775985 Msa0195810:CDS
GAATAACCTGTTAAAGATAT+AGG 0.401064 2_1:+12776006 None:intergenic
AAGCTTCAAAAGATGATAAT+GGG 0.403069 2_1:-12777667 Msa0195810:CDS
CTGATAGTAACAACCTTTAC+CGG 0.404938 2_1:+12772590 None:intergenic
GGGAAAAGCAGTGGTGGTGG+TGG 0.408139 2_1:+12777764 None:intergenic
TTGTCGTATTACACAATTTG+TGG 0.411249 2_1:-12772750 Msa0195810:three_prime_UTR
AGTGGCATGGTTACAGTTCA+TGG 0.411818 2_1:+12777808 None:intergenic
TTGAACTTGACAGTTGTCAT+AGG 0.416477 2_1:-12773132 Msa0195810:CDS
TGTGTTAGTGTTGTAAATTC+GGG 0.423460 2_1:-12772660 Msa0195810:three_prime_UTR
TTTAGTTCTGGTTGTTCTAC+CGG 0.429317 2_1:-12776523 Msa0195810:CDS
TGCTAGTTGTTCAGGGGTTG+TGG 0.434463 2_1:+12775755 None:intergenic
AAAAGCAGTGGTGGTGGTGG+TGG 0.437237 2_1:+12777767 None:intergenic
ATAATGGGCCATCACCAAAT+TGG 0.443593 2_1:-12777652 Msa0195810:CDS
AGCCCGGTCACTGCAGGTGG+TGG 0.444595 2_1:+12776039 None:intergenic
GTTATTCATAACATTAGGAC+TGG 0.445479 2_1:-12776100 Msa0195810:CDS
ATCAACTTGAACAATAATTC+AGG 0.453435 2_1:+12772504 None:intergenic
TTCATGGGTGTTGAATTTGA+TGG 0.459035 2_1:+12777824 None:intergenic
ATGCAGATGCTAGTTGTTCA+GGG 0.463241 2_1:+12775748 None:intergenic
CCATTAACCTTTACGAGGAA+AGG 0.463836 2_1:-12775961 Msa0195810:CDS
TTCTGTTTATAGGATCAATT+GGG 0.463911 2_1:-12776147 Msa0195810:intron
CAATTCCCAATGCAATGTTC+CGG 0.469874 2_1:+12774401 None:intergenic
ACTCCACCACCTGCAGTGAC+CGG 0.471747 2_1:-12776042 Msa0195810:CDS
GATAATATTAATGCCGGTAA+AGG 0.473881 2_1:-12772603 Msa0195810:three_prime_UTR
CAGGTCCGGAACATTGCATT+GGG 0.475625 2_1:-12774406 Msa0195810:CDS
TGTCGTATTACACAATTTGT+GGG 0.475710 2_1:-12772749 Msa0195810:three_prime_UTR
TACATAGAATCTTTCTTCAT+GGG 0.476177 2_1:-12772865 Msa0195810:three_prime_UTR
TTTGGAAGCCCGGTCACTGC+AGG 0.479138 2_1:+12776033 None:intergenic
CCACGCAGAGCAAATTTCCC+AGG 0.488862 2_1:-12773611 Msa0195810:intron
AGATAATCCTTTCCTCGTAA+AGG 0.489400 2_1:+12775954 None:intergenic
GAAGAAACAAACTGTCCAAT+GGG 0.493850 2_1:+12777557 None:intergenic
TTCTGGTTGTTCTACCGGCA+AGG 0.499647 2_1:-12776518 Msa0195810:CDS
GCAGGTCCGGAACATTGCAT+TGG 0.501141 2_1:-12774407 Msa0195810:intron
TTTGGGAAAAGCAGTGGTGG+TGG 0.501906 2_1:+12777761 None:intergenic
GACGTCCCCTTTAAAACCTC+TGG 0.504609 2_1:+12773218 None:intergenic
CTCCACCACCTGCAGTGACC+GGG 0.509501 2_1:-12776041 Msa0195810:CDS
AGTGCTACTGCTAGTCCCAT+TGG 0.520144 2_1:-12777572 Msa0195810:CDS
CATGAAGAAAGATTCTATGT+AGG 0.522024 2_1:+12772867 None:intergenic
TTGCTTACCAATTTAACTCG+TGG 0.524511 2_1:+12777506 None:intergenic
TTGGAAACAACTGACTGCTA+TGG 0.525819 2_1:-12774362 Msa0195810:CDS
GGGTTCTACCAAGAAATACT+TGG 0.529184 2_1:-12776440 Msa0195810:CDS
AGTAAGGATAATATTAATGC+CGG 0.536012 2_1:-12772609 Msa0195810:three_prime_UTR
GAGAAATAAACCACACACTC+TGG 0.536461 2_1:-12777853 Msa0195810:five_prime_UTR
CATTGGGAATTGTGTCTCGT+AGG 0.537291 2_1:-12774390 Msa0195810:CDS
AAATCTCAATGACAGTAAAA+GGG 0.541790 2_1:+12775665 None:intergenic
CACTTAGACCAATTTGGTGA+TGG 0.546566 2_1:+12777644 None:intergenic
ATGGGTGTTGAATTTGATGG+TGG 0.546678 2_1:+12777827 None:intergenic
TATAGGAAGATTTGGAAGCC+CGG 0.550540 2_1:+12776023 None:intergenic
TGTGTAATACGACAATTATG+TGG 0.555522 2_1:+12772758 None:intergenic
GCTCTTACCAGTGCTAAAAG+TGG 0.557816 2_1:+12773062 None:intergenic
GGAAGCCCGGTCACTGCAGG+TGG 0.561132 2_1:+12776036 None:intergenic
AACTATGCAGGTTCTTGACA+TGG 0.561395 2_1:-12772904 Msa0195810:intron
ATTGGGAATTGTGTCTCGTA+GGG 0.563749 2_1:-12774389 Msa0195810:CDS
TTATTCATAACATTAGGACT+GGG 0.564776 2_1:-12776099 Msa0195810:CDS
ACATTAGGACTGGGTTCAGA+TGG 0.568358 2_1:-12776090 Msa0195810:CDS
ATAGAGTGAAGAAACGTAGT+GGG 0.568949 2_1:+12777533 None:intergenic
ACGAGGAAAGGATTATCTGT+AGG 0.571765 2_1:-12775949 Msa0195810:CDS
TGGTCTAAGTGGATTCCCAC+TGG 0.573181 2_1:-12777632 Msa0195810:CDS
GTGGTGGCAATGAAACCAAA+AGG 0.578849 2_1:+12777783 None:intergenic
GGAAGAAACAAACTGTCCAA+TGG 0.579860 2_1:+12777556 None:intergenic
CAATGAAACCAAAAGGAAAG+TGG 0.587121 2_1:+12777790 None:intergenic
CATCACCAAATTGGTCTAAG+TGG 0.591405 2_1:-12777643 Msa0195810:CDS
GTGCTTCCTCTGAGATACAT+AGG 0.596598 2_1:-12775714 Msa0195810:CDS
GTTCTTGACTGAACAAGTGC+AGG 0.597601 2_1:+12776063 None:intergenic
GTGGCATGGTTACAGTTCAT+GGG 0.598022 2_1:+12777809 None:intergenic
AACTAGCATCTGCATTGCGA+TGG 0.598048 2_1:-12775740 Msa0195810:CDS
TGGGTGTTGAATTTGATGGT+GGG 0.603079 2_1:+12777828 None:intergenic
ATGGTGGGAACCAGAGTGTG+TGG 0.608846 2_1:+12777843 None:intergenic
GTTCAGGGGTTGTGGTTGTG+AGG 0.620370 2_1:+12775763 None:intergenic
AAACCAAAAGGAAAGTGGCA+TGG 0.622480 2_1:+12777795 None:intergenic
ATCAGCGGCAAAAGAACCAG+TGG 0.623654 2_1:+12777616 None:intergenic
TGCAGATGCTAGTTGTTCAG+GGG 0.627683 2_1:+12775749 None:intergenic
CAATCTGAAAACTTTATCAG+CGG 0.634884 2_1:+12777601 None:intergenic
TCTACCAAGAAATACTTGGA+AGG 0.639774 2_1:-12776436 Msa0195810:intron
CCTGGGAAATTTGCTCTGCG+TGG 0.650289 2_1:+12773611 None:intergenic
AATAGAGTGAAGAAACGTAG+TGG 0.659171 2_1:+12777532 None:intergenic
CTGCAGGCTATGATAGCCAG+AGG 0.665465 2_1:-12773234 Msa0195810:intron
TAGGTCCATTAACCTTTACG+AGG 0.671782 2_1:-12775966 Msa0195810:CDS
TGTATCTTTCTCATTAGACA+AGG 0.672996 2_1:+12773085 None:intergenic
TCAGCGGCAAAAGAACCAGT+GGG 0.678344 2_1:+12777617 None:intergenic
TAGAGTGAAGAAACGTAGTG+GGG 0.692405 2_1:+12777534 None:intergenic
GATACGCCTATGTATCTCAG+AGG 0.705878 2_1:+12775708 None:intergenic
AGAGTGAAGAAACGTAGTGG+GGG 0.708471 2_1:+12777535 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATATAATTTATTTATGA+AGG - chr2_1:12774490-12774509 Msa0195810:intron 10.0%
!! TATTTGTTTGTATTATTAAT+TGG - chr2_1:12774934-12774953 Msa0195810:intron 10.0%
!!! TTTTATTTTGTATTATTAGT+TGG + chr2_1:12775565-12775584 None:intergenic 10.0%
!!! TATCAATTTTTATGTTTAGT+CGG + chr2_1:12773014-12773033 None:intergenic 15.0%
!! TAAAAAATATAGTGAATAAG+AGG + chr2_1:12773916-12773935 None:intergenic 15.0%
!!! CTTGAATTTATTTTGATTTT+GGG + chr2_1:12775390-12775409 None:intergenic 15.0%
!!! ACTTGAATTTATTTTGATTT+TGG + chr2_1:12775391-12775410 None:intergenic 15.0%
!! TAAGACAAAAAAAAAATCTT+TGG - chr2_1:12777307-12777326 Msa0195810:intron 15.0%
!! AAGACAAAAAAAAAATCTTT+GGG - chr2_1:12777308-12777327 Msa0195810:intron 15.0%
!!! TTTTTCTTCTATCATTAATT+CGG + chr2_1:12777667-12777686 None:intergenic 15.0%
!! TTTCATGAATTATAAAGCTT+TGG - chr2_1:12773356-12773375 Msa0195810:intron 20.0%
!!! TAATTGCTAACATTTTCTTA+AGG + chr2_1:12773637-12773656 None:intergenic 20.0%
!!! TATATTTGAATAGTTTGTCT+TGG - chr2_1:12773688-12773707 Msa0195810:intron 20.0%
!!! TATTCTCTAGTTTCATAATT+TGG - chr2_1:12773961-12773980 Msa0195810:intron 20.0%
!!! ATTCTCTAGTTTCATAATTT+GGG - chr2_1:12773962-12773981 Msa0195810:intron 20.0%
!! CTAATTCAATTTCTGTTTAT+AGG - chr2_1:12774141-12774160 Msa0195810:intron 20.0%
!!! CTTTGATTTACAGTTATTTT+AGG - chr2_1:12774430-12774449 Msa0195810:intron 20.0%
!!! TAGTACTAATTTTTTTACCA+AGG + chr2_1:12775156-12775175 None:intergenic 20.0%
!! TGAAAGAACATATAATTAGT+GGG + chr2_1:12775245-12775264 None:intergenic 20.0%
!!! AATATTTTTTTTATGATGCC+TGG + chr2_1:12776007-12776026 None:intergenic 20.0%
!!! AAGACACATGTAATTTTTAA+AGG - chr2_1:12776440-12776459 Msa0195810:CDS 20.0%
!!! AAAACTTAATTTGGAATTCT+AGG + chr2_1:12776467-12776486 None:intergenic 20.0%
!! AACAATAACAAAACATAAAG+GGG + chr2_1:12776739-12776758 None:intergenic 20.0%
!! CAACAATAACAAAACATAAA+GGG + chr2_1:12776740-12776759 None:intergenic 20.0%
!! ATATTCACCAAATTTAAACT+GGG + chr2_1:12776797-12776816 None:intergenic 20.0%
!! AATATTCACCAAATTTAAAC+TGG + chr2_1:12776798-12776817 None:intergenic 20.0%
!! AGACAAAAAAAAAATCTTTG+GGG - chr2_1:12777309-12777328 Msa0195810:intron 20.0%
!!! TATTAATTCAATACAGCTTT+TGG + chr2_1:12777770-12777789 None:intergenic 20.0%
!! TTATGTAAACAATGTATGTT+TGG - chr2_1:12777857-12777876 Msa0195810:five_prime_UTR 20.0%
!! AGTGTTAAAAGAGTTTTCTT+TGG + chr2_1:12772579-12772598 None:intergenic 25.0%
! TTATAATTGGATTTCTCTTC+AGG + chr2_1:12772605-12772624 None:intergenic 25.0%
!! GAAGCTTTGATTCTTATAAT+TGG + chr2_1:12772618-12772637 None:intergenic 25.0%
! AAAGCTTCAAAAGATGATAA+TGG - chr2_1:12772630-12772649 Msa0195810:three_prime_UTR 25.0%
! AAGCTTCAAAAGATGATAAT+GGG - chr2_1:12772631-12772650 Msa0195810:three_prime_UTR 25.0%
!!! GGTGTTTTAGTAAGATTTTA+TGG - chr2_1:12772894-12772913 Msa0195810:three_prime_UTR 25.0%
!!! GTTTTAGTAAGATTTTATGG+AGG - chr2_1:12772897-12772916 Msa0195810:three_prime_UTR 25.0%
! TGCAACATAGATCAAATTAT+AGG + chr2_1:12772967-12772986 None:intergenic 25.0%
!!! TATGCTTTTTATTCTAGCTT+GGG - chr2_1:12773042-12773061 Msa0195810:intron 25.0%
! CTCTCTTTGATTACAAATAA+TGG + chr2_1:12773110-12773129 None:intergenic 25.0%
! TACTACATAAGTCATATTGT+AGG + chr2_1:12773153-12773172 None:intergenic 25.0%
!!! CTAACTAGTCTTTGAAATAT+AGG - chr2_1:12773433-12773452 Msa0195810:intron 25.0%
!!! TAGTCTTTGAAATATAGGAT+AGG - chr2_1:12773438-12773457 Msa0195810:intron 25.0%
!!! TATTTTTTAACCGTCATGTT+TGG - chr2_1:12773927-12773946 Msa0195810:intron 25.0%
! TGATAGACTTATTTATGAGA+AGG + chr2_1:12774039-12774058 None:intergenic 25.0%
! TTTCTGTTTATAGGATCAAT+TGG - chr2_1:12774150-12774169 Msa0195810:intron 25.0%
! TTCTGTTTATAGGATCAATT+GGG - chr2_1:12774151-12774170 Msa0195810:intron 25.0%
!! GCATTGTTATTCATAACATT+AGG - chr2_1:12774193-12774212 Msa0195810:intron 25.0%
! TTATTCATAACATTAGGACT+GGG - chr2_1:12774199-12774218 Msa0195810:intron 25.0%
! GTTAAAGATATAGGAAGATT+TGG + chr2_1:12774286-12774305 None:intergenic 25.0%
! AATCTTCCTATATCTTTAAC+AGG - chr2_1:12774286-12774305 Msa0195810:intron 25.0%
! GAATAACCTGTTAAAGATAT+AGG + chr2_1:12774295-12774314 None:intergenic 25.0%
! TCATATGTAATCTCAAAGTT+AGG - chr2_1:12774313-12774332 Msa0195810:intron 25.0%
! TGTAAATCAAAGATAAAAGC+AGG + chr2_1:12774422-12774441 None:intergenic 25.0%
!!! TACAGTTATTTTAGGACTTT+TGG - chr2_1:12774438-12774457 Msa0195810:intron 25.0%
! AAATCTCAATGACAGTAAAA+GGG + chr2_1:12774636-12774655 None:intergenic 25.0%
! TAAATCTCAATGACAGTAAA+AGG + chr2_1:12774637-12774656 None:intergenic 25.0%
! CAATGTTTACTACTATAATC+TGG + chr2_1:12774743-12774762 None:intergenic 25.0%
! CATTGTAACTATAACTTTAG+AGG - chr2_1:12774758-12774777 Msa0195810:intron 25.0%
!! TATAACTTTAGAGGAATGAT+AGG - chr2_1:12774767-12774786 Msa0195810:intron 25.0%
!! ATAACTTTAGAGGAATGATA+GGG - chr2_1:12774768-12774787 Msa0195810:intron 25.0%
!!! ACTTCCAATTTGTTATCTTT+GGG + chr2_1:12775078-12775097 None:intergenic 25.0%
!!! AACTTCCAATTTGTTATCTT+TGG + chr2_1:12775079-12775098 None:intergenic 25.0%
! AAAGAACATATAATTAGTGG+GGG + chr2_1:12775243-12775262 None:intergenic 25.0%
! GAAAGAACATATAATTAGTG+GGG + chr2_1:12775244-12775263 None:intergenic 25.0%
! GTGAAAGAACATATAATTAG+TGG + chr2_1:12775246-12775265 None:intergenic 25.0%
! AAAAGTTATGAAGAATCCTA+TGG + chr2_1:12775713-12775732 None:intergenic 25.0%
! AATTTGTCAAACACTATCAA+AGG - chr2_1:12775743-12775762 Msa0195810:CDS 25.0%
! AAATTTAAGCCTAATTGCTT+CGG + chr2_1:12775825-12775844 None:intergenic 25.0%
! ATTGTGTAAGCATTCAAAAT+TGG - chr2_1:12776150-12776169 Msa0195810:intron 25.0%
! AATGAAACAGATCACTAATT+CGG + chr2_1:12776216-12776235 None:intergenic 25.0%
! GTTTCATTTATCCCAATATT+TGG - chr2_1:12776228-12776247 Msa0195810:intron 25.0%
! ATCCTAAATAAAATCACCAA+AGG - chr2_1:12776321-12776340 Msa0195810:intron 25.0%
!!! CTGCATTCTAAAACTTAATT+TGG + chr2_1:12776476-12776495 None:intergenic 25.0%
!!! CAAATTAAGTTTTAGAATGC+AGG - chr2_1:12776474-12776493 Msa0195810:CDS 25.0%
! GGAAAAATATCATTAGAATG+AGG + chr2_1:12776606-12776625 None:intergenic 25.0%
!!! AAATATTTTTGAAGATGCGA+CGG + chr2_1:12776663-12776682 None:intergenic 25.0%
! ACAATAACAAAACATAAAGG+GGG + chr2_1:12776738-12776757 None:intergenic 25.0%
! GCAACAATAACAAAACATAA+AGG + chr2_1:12776741-12776760 None:intergenic 25.0%
! TATTTATCATAAAATCCTGC+AGG - chr2_1:12777048-12777067 Msa0195810:intron 25.0%
! TACATAGAATCTTTCTTCAT+GGG - chr2_1:12777433-12777452 Msa0195810:intron 25.0%
! ATGTGTTAGTGTTGTAAATT+CGG - chr2_1:12777637-12777656 Msa0195810:CDS 25.0%
! AGTAAGGATAATATTAATGC+CGG - chr2_1:12777689-12777708 Msa0195810:CDS 25.0%
! ATCAACTTGAACAATAATTC+AGG + chr2_1:12777797-12777816 None:intergenic 25.0%
CAATCTGAAAACTTTATCAG+CGG + chr2_1:12772700-12772719 None:intergenic 30.0%
TATTGATCCACGAGTTAAAT+TGG - chr2_1:12772785-12772804 Msa0195810:three_prime_UTR 30.0%
! TGGTAAGCAAATTTGTTTCA+TGG - chr2_1:12772805-12772824 Msa0195810:three_prime_UTR 30.0%
! GGTAAGCAAATTTGTTTCAT+GGG - chr2_1:12772806-12772825 Msa0195810:three_prime_UTR 30.0%
! ATTCATGCTTGTGCATTTTT+AGG - chr2_1:12772873-12772892 Msa0195810:three_prime_UTR 30.0%
ATTATAGGACACAAGTTCAT+TGG + chr2_1:12772952-12772971 None:intergenic 30.0%
!! CTATGCTTTTTATTCTAGCT+TGG - chr2_1:12773041-12773060 Msa0195810:intron 30.0%
!!! TGTTTTAGTTTTGGGGTTTT+GGG - chr2_1:12773080-12773099 Msa0195810:exon 30.0%
CAATATGACTTATGTAGTAC+TGG - chr2_1:12773154-12773173 Msa0195810:CDS 30.0%
GGAAAATTCTATTATCCCTT+TGG + chr2_1:12773524-12773543 None:intergenic 30.0%
TTGTTGTGGATACATGTTAA+AGG - chr2_1:12773568-12773587 Msa0195810:intron 30.0%
! AATAGTTTGTCTTGGCTTAT+TGG - chr2_1:12773696-12773715 Msa0195810:intron 30.0%
! TTACATGTGTTTCTGTTCTT+TGG - chr2_1:12773720-12773739 Msa0195810:intron 30.0%
! TCTTTGGTAATCAATTAGTG+TGG - chr2_1:12773736-12773755 Msa0195810:intron 30.0%
!! ATCAATTAGTGTGGTTTTAC+AGG - chr2_1:12773745-12773764 Msa0195810:intron 30.0%
TCGCATATAATTATGCGATT+TGG - chr2_1:12773803-12773822 Msa0195810:intron 30.0%
ACTTGACTTTGCTTTCAATT+TGG - chr2_1:12773837-12773856 Msa0195810:intron 30.0%
CTTGACTTTGCTTTCAATTT+GGG - chr2_1:12773838-12773857 Msa0195810:intron 30.0%
GAATAAGAGGATATAAGCAA+TGG + chr2_1:12773903-12773922 None:intergenic 30.0%
GAAAAAACAACCAAACATGA+CGG + chr2_1:12773940-12773959 None:intergenic 30.0%
GTTATTCATAACATTAGGAC+TGG - chr2_1:12774198-12774217 Msa0195810:intron 30.0%
!!! TATCAGTCTAGTTTTTGATG+AGG - chr2_1:12774655-12774674 Msa0195810:intron 30.0%
TTTCACATTACTATGTTGAG+TGG - chr2_1:12774694-12774713 Msa0195810:intron 30.0%
TTCACATTACTATGTTGAGT+GGG - chr2_1:12774695-12774714 Msa0195810:intron 30.0%
TGTCATTATTAGATTGGAGT+GGG + chr2_1:12774819-12774838 None:intergenic 30.0%
! GTGATGTGTCATTATTAGAT+TGG + chr2_1:12774825-12774844 None:intergenic 30.0%
CAAAATAGATGTTTGACAGT+GGG + chr2_1:12775052-12775071 None:intergenic 30.0%
ACAAAATAGATGTTTGACAG+TGG + chr2_1:12775053-12775072 None:intergenic 30.0%
GTTTCCCAAAGATAACAAAT+TGG - chr2_1:12775071-12775090 Msa0195810:intron 30.0%
TGATGAATCACTATGTGAAT+CGG + chr2_1:12775206-12775225 None:intergenic 30.0%
ATTCACATAGTGATTCATCA+GGG - chr2_1:12775206-12775225 Msa0195810:intron 30.0%
TCATGAGAATGTTGATATGT+CGG - chr2_1:12775445-12775464 Msa0195810:intron 30.0%
!! TATCCTGATTATTTTGTTGC+AGG - chr2_1:12775873-12775892 Msa0195810:intron 30.0%
! ACTGTGCATTGATCTTATTT+AGG - chr2_1:12776097-12776116 Msa0195810:CDS 30.0%
! TTTTGAATGCTTACACAATG+TGG + chr2_1:12776149-12776168 None:intergenic 30.0%
! TTATCCCAATATTTGGAGTT+TGG - chr2_1:12776235-12776254 Msa0195810:intron 30.0%
!! GATTTTATTTAGGATCAGAC+TGG + chr2_1:12776316-12776335 None:intergenic 30.0%
!! TGCCTTTGGTGATTTTATTT+AGG + chr2_1:12776326-12776345 None:intergenic 30.0%
ACAAATAACTTTCATGCCTT+TGG + chr2_1:12776340-12776359 None:intergenic 30.0%
AAACTGTGGAGTCATATAAA+GGG + chr2_1:12776627-12776646 None:intergenic 30.0%
AAAACTGTGGAGTCATATAA+AGG + chr2_1:12776628-12776647 None:intergenic 30.0%
GAAGTAGTTAAAGAAAACTG+TGG + chr2_1:12776641-12776660 None:intergenic 30.0%
CAACACAAACAAATTTCTGA+TGG + chr2_1:12776835-12776854 None:intergenic 30.0%
! TTCTTGTCAGAATCATCTTT+TGG - chr2_1:12777121-12777140 Msa0195810:intron 30.0%
! TCTTGTCAGAATCATCTTTT+GGG - chr2_1:12777122-12777141 Msa0195810:intron 30.0%
TGTATCTTTCTCATTAGACA+AGG + chr2_1:12777216-12777235 None:intergenic 30.0%
! AAAAAAAATCTTTGGGGACA+AGG - chr2_1:12777315-12777334 Msa0195810:intron 30.0%
AACAATGTAGATAACTATGC+AGG - chr2_1:12777382-12777401 Msa0195810:intron 30.0%
CATGAAGAAAGATTCTATGT+AGG + chr2_1:12777434-12777453 None:intergenic 30.0%
CTACATAGAATCTTTCTTCA+TGG - chr2_1:12777432-12777451 Msa0195810:intron 30.0%
CAAAGTTGAAAACAGATGTT+TGG - chr2_1:12777475-12777494 Msa0195810:intron 30.0%
TGTGTAATACGACAATTATG+TGG + chr2_1:12777543-12777562 None:intergenic 30.0%
TTGTCGTATTACACAATTTG+TGG - chr2_1:12777548-12777567 Msa0195810:CDS 30.0%
TGTCGTATTACACAATTTGT+GGG - chr2_1:12777549-12777568 Msa0195810:CDS 30.0%
TGTGTTAGTGTTGTAAATTC+GGG - chr2_1:12777638-12777657 Msa0195810:CDS 30.0%
TGATAGAAGAAAAAGCAGTA+AGG - chr2_1:12777673-12777692 Msa0195810:CDS 30.0%
GATAATATTAATGCCGGTAA+AGG - chr2_1:12777695-12777714 Msa0195810:CDS 30.0%
!! TTCATGGGTGTTGAATTTGA+TGG + chr2_1:12772477-12772496 None:intergenic 35.0%
CAATGAAACCAAAAGGAAAG+TGG + chr2_1:12772511-12772530 None:intergenic 35.0%
! GCACTGGATAATCGAATTTT+GGG + chr2_1:12772557-12772576 None:intergenic 35.0%
! AAAAGAGTTTTCTTTGGCAC+TGG + chr2_1:12772573-12772592 None:intergenic 35.0%
GAAGAAACAAACTGTCCAAT+GGG + chr2_1:12772744-12772763 None:intergenic 35.0%
ATAGAGTGAAGAAACGTAGT+GGG + chr2_1:12772768-12772787 None:intergenic 35.0%
AATAGAGTGAAGAAACGTAG+TGG + chr2_1:12772769-12772788 None:intergenic 35.0%
TTGCTTACCAATTTAACTCG+TGG + chr2_1:12772795-12772814 None:intergenic 35.0%
!!! TATGGAGGAGTGTTTTAGTT+TGG - chr2_1:12772912-12772931 Msa0195810:intron 35.0%
!!! ATGGAGGAGTGTTTTAGTTT+GGG - chr2_1:12772913-12772932 Msa0195810:intron 35.0%
!!! GTGTTTTAGTTTGGGAGTTT+TGG - chr2_1:12772921-12772940 Msa0195810:intron 35.0%
!!! ATGGAGGACTGTTTTAGTTT+TGG - chr2_1:12773071-12773090 Msa0195810:three_prime_UTR 35.0%
!!! TGGAGGACTGTTTTAGTTTT+GGG - chr2_1:12773072-12773091 Msa0195810:three_prime_UTR 35.0%
!!! CTGTTTTAGTTTTGGGGTTT+TGG - chr2_1:12773079-12773098 Msa0195810:exon 35.0%
! TTGCTGGATCACATTTTACA+AGG + chr2_1:12773413-12773432 None:intergenic 35.0%
! TTCAAAGACTAGTTAGTTGC+TGG + chr2_1:12773429-12773448 None:intergenic 35.0%
TTTGGCGAACATGAAATATG+TGG + chr2_1:12773506-12773525 None:intergenic 35.0%
ACATATTTCATGTTCGCCAA+AGG - chr2_1:12773505-12773524 Msa0195810:intron 35.0%
CATATTTCATGTTCGCCAAA+GGG - chr2_1:12773506-12773525 Msa0195810:intron 35.0%
TGGATACATGTTAAAGGTGA+AGG - chr2_1:12773574-12773593 Msa0195810:intron 35.0%
GGATACATGTTAAAGGTGAA+GGG - chr2_1:12773575-12773594 Msa0195810:intron 35.0%
TAGTGAAACAATTGTGTAGC+TGG - chr2_1:12773665-12773684 Msa0195810:intron 35.0%
!! TTAGTGTGGTTTTACAGGTA+TGG - chr2_1:12773750-12773769 Msa0195810:intron 35.0%
!! TTTAGTTCTGGTTGTTCTAC+CGG - chr2_1:12773775-12773794 Msa0195810:intron 35.0%
ATAATTATATGCGACCTTGC+CGG + chr2_1:12773797-12773816 None:intergenic 35.0%
TCTACCAAGAAATACTTGGA+AGG - chr2_1:12773862-12773881 Msa0195810:intron 35.0%
TCTATCAAGTCAAAACTGCT+TGG - chr2_1:12774052-12774071 Msa0195810:intron 35.0%
ATTTGTAAGCAAATAGCCAG+TGG + chr2_1:12774078-12774097 None:intergenic 35.0%
AGATAATCCTTTCCTCGTAA+AGG + chr2_1:12774347-12774366 None:intergenic 35.0%
! GTGTCATTATTAGATTGGAG+TGG + chr2_1:12774820-12774839 None:intergenic 35.0%
!! TTTTGGAGAATTGGAGAAGA+GGG + chr2_1:12774981-12775000 None:intergenic 35.0%
!!! TTGATGCAGTTTTGGAGAAT+TGG + chr2_1:12774990-12775009 None:intergenic 35.0%
GATTCACATAGTGATTCATC+AGG - chr2_1:12775205-12775224 Msa0195810:intron 35.0%
AACATATAATTAGTGGGGGT+TGG + chr2_1:12775239-12775258 None:intergenic 35.0%
! AATGGGTCATGTGTCATTAT+TGG - chr2_1:12775638-12775657 Msa0195810:intron 35.0%
! GTCATGTGTCATTATTGGAT+TGG - chr2_1:12775643-12775662 Msa0195810:intron 35.0%
! TGTCATTATTGGATTGGACT+TGG - chr2_1:12775649-12775668 Msa0195810:CDS 35.0%
CTAATTGCTTCGGTTCAATT+GGG + chr2_1:12775815-12775834 None:intergenic 35.0%
!! TGATTATTTTGTTGCAGGTC+CGG - chr2_1:12775878-12775897 Msa0195810:intron 35.0%
GGAACACAGATAAGAAGTTT+AGG + chr2_1:12776039-12776058 None:intergenic 35.0%
CAGTCCAAACTCCAAATATT+GGG + chr2_1:12776242-12776261 None:intergenic 35.0%
CATGTGTCTTTAAGTAGTAC+AGG + chr2_1:12776430-12776449 None:intergenic 35.0%
ATGTTATGTGGTAGGTAGTT+TGG - chr2_1:12776506-12776525 Msa0195810:CDS 35.0%
TTCCCAACCCAGTTTAAATT+TGG - chr2_1:12776787-12776806 Msa0195810:intron 35.0%
CACCAAATTTAAACTGGGTT+GGG + chr2_1:12776792-12776811 None:intergenic 35.0%
TCACCAAATTTAAACTGGGT+TGG + chr2_1:12776793-12776812 None:intergenic 35.0%
!! TTTCTAGAACACAGCATTGT+TGG + chr2_1:12776889-12776908 None:intergenic 35.0%
AAATGTCAGTTTGTGTTCAG+AGG + chr2_1:12776966-12776985 None:intergenic 35.0%
! CTGAACACAAACTGACATTT+TGG - chr2_1:12776966-12776985 Msa0195810:intron 35.0%
!!! TTTTGGAGCTAATATGCTGT+TGG - chr2_1:12776983-12777002 Msa0195810:intron 35.0%
!! ATGATAGCCAGAGGTTTTAA+AGG - chr2_1:12777073-12777092 Msa0195810:intron 35.0%
!!! TGATAGCCAGAGGTTTTAAA+GGG - chr2_1:12777074-12777093 Msa0195810:intron 35.0%
TTGAACTTGACAGTTGTCAT+AGG - chr2_1:12777166-12777185 Msa0195810:intron 35.0%
! CAAATAGCCTTTAGAGAAGA+AGG + chr2_1:12777345-12777364 None:intergenic 35.0%
TCTAAAGGCTATTTGTCGTT+TGG - chr2_1:12777350-12777369 Msa0195810:intron 35.0%
TGCTAGATCAAAAAAGGATG+TGG + chr2_1:12777600-12777619 None:intergenic 35.0%
CACTTGTGCTAGATCAAAAA+AGG + chr2_1:12777606-12777625 None:intergenic 35.0%
!!! CTTTTTTGATCTAGCACAAG+TGG - chr2_1:12777604-12777623 Msa0195810:CDS 35.0%
CTGATAGTAACAACCTTTAC+CGG + chr2_1:12777711-12777730 None:intergenic 35.0%
GAGAAATAAACCACACACTC+TGG - chr2_1:12772445-12772464 Msa0195810:three_prime_UTR 40.0%
!! TGGGTGTTGAATTTGATGGT+GGG + chr2_1:12772473-12772492 None:intergenic 40.0%
!! ATGGGTGTTGAATTTGATGG+TGG + chr2_1:12772474-12772493 None:intergenic 40.0%
!!! TAACCATGCCACTTTCCTTT+TGG - chr2_1:12772500-12772519 Msa0195810:three_prime_UTR 40.0%
AAACCAAAAGGAAAGTGGCA+TGG + chr2_1:12772506-12772525 None:intergenic 40.0%
!! AATTTTGGGAAAAGCAGTGG+TGG + chr2_1:12772543-12772562 None:intergenic 40.0%
!! TCGAATTTTGGGAAAAGCAG+TGG + chr2_1:12772546-12772565 None:intergenic 40.0%
!! GGCACTGGATAATCGAATTT+TGG + chr2_1:12772558-12772577 None:intergenic 40.0%
!! ATAATGGGCCATCACCAAAT+TGG - chr2_1:12772646-12772665 Msa0195810:three_prime_UTR 40.0%
! CACTTAGACCAATTTGGTGA+TGG + chr2_1:12772657-12772676 None:intergenic 40.0%
! CATCACCAAATTGGTCTAAG+TGG - chr2_1:12772655-12772674 Msa0195810:three_prime_UTR 40.0%
GGAATCCACTTAGACCAATT+TGG + chr2_1:12772663-12772682 None:intergenic 40.0%
GGAAGAAACAAACTGTCCAA+TGG + chr2_1:12772745-12772764 None:intergenic 40.0%
TAGAGTGAAGAAACGTAGTG+GGG + chr2_1:12772767-12772786 None:intergenic 40.0%
!! ATTCTAGCTTGGGCATTGTA+TGG - chr2_1:12773052-12773071 Msa0195810:intron 40.0%
!!! GGAGGACTGTTTTAGTTTTG+GGG - chr2_1:12773073-12773092 Msa0195810:three_prime_UTR 40.0%
TATCTGGTGTTTGACACATG+TGG - chr2_1:12773202-12773221 Msa0195810:CDS 40.0%
AGCTATCACTCAAACAGTCA+TGG + chr2_1:12773545-12773564 None:intergenic 40.0%
GAGTGATAGCTAAGTTGTTG+TGG - chr2_1:12773554-12773573 Msa0195810:intron 40.0%
TGTTAAAGGTGAAGGGCTTA+AGG - chr2_1:12773582-12773601 Msa0195810:intron 40.0%
!!! ACAGGTATGGCTTTTAGTTC+TGG - chr2_1:12773763-12773782 Msa0195810:intron 40.0%
GGGTTCTACCAAGAAATACT+TGG - chr2_1:12773858-12773877 Msa0195810:intron 40.0%
CTCACCTTCCAAGTATTTCT+TGG + chr2_1:12773869-12773888 None:intergenic 40.0%
!! GGGTCGTGTTTATTTTCTGT+CGG - chr2_1:12774171-12774190 Msa0195810:intron 40.0%
TATAGGAAGATTTGGAAGCC+CGG + chr2_1:12774278-12774297 None:intergenic 40.0%
TAGGTCCATTAACCTTTACG+AGG - chr2_1:12774332-12774351 Msa0195810:intron 40.0%
CCTTTCCTCGTAAAGGTTAA+TGG + chr2_1:12774340-12774359 None:intergenic 40.0%
CCATTAACCTTTACGAGGAA+AGG - chr2_1:12774337-12774356 Msa0195810:intron 40.0%
ACGAGGAAAGGATTATCTGT+AGG - chr2_1:12774349-12774368 Msa0195810:intron 40.0%
ATGCAGATGCTAGTTGTTCA+GGG + chr2_1:12774553-12774572 None:intergenic 40.0%
AATGCAGATGCTAGTTGTTC+AGG + chr2_1:12774554-12774573 None:intergenic 40.0%
! ATCCGATTCGCAGGTAAAAT+GGG + chr2_1:12774847-12774866 None:intergenic 40.0%
!!! GTTTTGGAGAATTGGAGAAG+AGG + chr2_1:12774982-12775001 None:intergenic 40.0%
! CAGAGACATTGATGCAGTTT+TGG + chr2_1:12774998-12775017 None:intergenic 40.0%
GATTTGAAGACAGGTTCACA+CGG + chr2_1:12775127-12775146 None:intergenic 40.0%
! AGGATGTTCGATTTGAAGAC+AGG + chr2_1:12775136-12775155 None:intergenic 40.0%
GTCTTCAAATCGAACATCCT+TGG - chr2_1:12775136-12775155 Msa0195810:intron 40.0%
ATCACTATGTGAATCGGAAG+TGG + chr2_1:12775200-12775219 None:intergenic 40.0%
! AAGAGCATGTGAATCGGAAT+TGG + chr2_1:12775268-12775287 None:intergenic 40.0%
! TAGTCGAAGAGCATGTGAAT+CGG + chr2_1:12775274-12775293 None:intergenic 40.0%
TCACATGCTCTTCGACTAAT+CGG - chr2_1:12775276-12775295 Msa0195810:intron 40.0%
ATCAACATTCTCATGAGCTG+CGG + chr2_1:12775441-12775460 None:intergenic 40.0%
! CTCTTTGTAACTTGCACATC+CGG - chr2_1:12775604-12775623 Msa0195810:intron 40.0%
! ATCCGGTTTGCAGGTAAAAT+GGG - chr2_1:12775621-12775640 Msa0195810:intron 40.0%
!! TGTGTCTAAAGGAGTGTTAG+AGG - chr2_1:12775674-12775693 Msa0195810:CDS 40.0%
!! GTGTCTAAAGGAGTGTTAGA+GGG - chr2_1:12775675-12775694 Msa0195810:CDS 40.0%
ATGAAGAATCCTATGGTCAG+AGG + chr2_1:12775706-12775725 None:intergenic 40.0%
CCTAATTGCTTCGGTTCAAT+TGG + chr2_1:12775816-12775835 None:intergenic 40.0%
CCAATTGAACCGAAGCAATT+AGG - chr2_1:12775813-12775832 Msa0195810:intron 40.0%
GGACCTGCAACAAAATAATC+AGG + chr2_1:12775879-12775898 None:intergenic 40.0%
CAATTCCCAATGCAATGTTC+CGG + chr2_1:12775900-12775919 None:intergenic 40.0%
ATTGGGAATTGTGTCTCGTA+GGG - chr2_1:12775909-12775928 Msa0195810:intron 40.0%
TTGTGTCTCGTAGGGTAAAT+TGG - chr2_1:12775917-12775936 Msa0195810:intron 40.0%
TTGGAAACAACTGACTGCTA+TGG - chr2_1:12775936-12775955 Msa0195810:CDS 40.0%
! TAGCTTTTCCACTTGTATCC+AGG - chr2_1:12775986-12776005 Msa0195810:CDS 40.0%
TTATGATGCCTGGATACAAG+TGG + chr2_1:12775997-12776016 None:intergenic 40.0%
TATCTGTGTTCCAACGAACT+AGG - chr2_1:12776047-12776066 Msa0195810:CDS 40.0%
CAACGAACTAGGTAAGTGAT+GGG - chr2_1:12776058-12776077 Msa0195810:CDS 40.0%
CCAGTCCAAACTCCAAATAT+TGG + chr2_1:12776243-12776262 None:intergenic 40.0%
! CCAATATTTGGAGTTTGGAC+TGG - chr2_1:12776240-12776259 Msa0195810:intron 40.0%
AGGTTTGTCGTGATGTTATG+TGG - chr2_1:12776494-12776513 Msa0195810:CDS 40.0%
TTGTCGTGATGTTATGTGGT+AGG - chr2_1:12776498-12776517 Msa0195810:CDS 40.0%
CAAATTTCCCAGGTTTGTCT+TGG - chr2_1:12776697-12776716 Msa0195810:intron 40.0%
CATACATCCAAGACAAACCT+GGG + chr2_1:12776707-12776726 None:intergenic 40.0%
TCATACATCCAAGACAAACC+TGG + chr2_1:12776708-12776727 None:intergenic 40.0%
TGTCACAGAAAGTGAGTGTA+TGG + chr2_1:12776939-12776958 None:intergenic 40.0%
ACACTCACTTTCTGTGACAT+AGG - chr2_1:12776940-12776959 Msa0195810:intron 40.0%
!!! GATAGCCAGAGGTTTTAAAG+GGG - chr2_1:12777075-12777094 Msa0195810:intron 40.0%
!! GTCAGAATCATCTTTTGGGA+TGG - chr2_1:12777126-12777145 Msa0195810:intron 40.0%
!! AGATACACCACTTTTAGCAC+TGG - chr2_1:12777229-12777248 Msa0195810:intron 40.0%
AGGTGTTCCTTCTTCTCTAA+AGG - chr2_1:12777335-12777354 Msa0195810:intron 40.0%
AACTATGCAGGTTCTTGACA+TGG - chr2_1:12777394-12777413 Msa0195810:intron 40.0%
GTGGCATGGTTACAGTTCAT+GGG + chr2_1:12772492-12772511 None:intergenic 45.0%
AGTGGCATGGTTACAGTTCA+TGG + chr2_1:12772493-12772512 None:intergenic 45.0%
GTGGTGGCAATGAAACCAAA+AGG + chr2_1:12772518-12772537 None:intergenic 45.0%
AGAGTGAAGAAACGTAGTGG+GGG + chr2_1:12772766-12772785 None:intergenic 45.0%
CCAGATAGACTCTCAAGTCT+CGG + chr2_1:12773189-12773208 None:intergenic 45.0%
ACACGTGTTAGTGTCGTGTT+TGG - chr2_1:12773271-12773290 Msa0195810:intron 45.0%
!! TTAGTGTCGTGTTTGGTGTC+TGG - chr2_1:12773278-12773297 Msa0195810:intron 45.0%
!! TAGTGTCGTGTTTGGTGTCT+GGG - chr2_1:12773279-12773298 Msa0195810:intron 45.0%
!! CTGCTGCTGACTGTAGTTTT+TGG - chr2_1:12773383-12773402 Msa0195810:intron 45.0%
!! CTGCTGACTGTAGTTTTTGG+TGG - chr2_1:12773386-12773405 Msa0195810:intron 45.0%
TAGGATAGGATCATGTGTGC+TGG - chr2_1:12773452-12773471 Msa0195810:intron 45.0%
ACATTAGGACTGGGTTCAGA+TGG - chr2_1:12774208-12774227 Msa0195810:intron 45.0%
GTTCTTGACTGAACAAGTGC+AGG + chr2_1:12774238-12774257 None:intergenic 45.0%
TGCAGATGCTAGTTGTTCAG+GGG + chr2_1:12774552-12774571 None:intergenic 45.0%
AACTAGCATCTGCATTGCGA+TGG - chr2_1:12774558-12774577 Msa0195810:intron 45.0%
!! GTGCTTCCTCTGAGATACAT+AGG - chr2_1:12774584-12774603 Msa0195810:intron 45.0%
GATACGCCTATGTATCTCAG+AGG + chr2_1:12774593-12774612 None:intergenic 45.0%
! CACCCATTTTACCTGCGAAT+CGG - chr2_1:12774842-12774861 Msa0195810:intron 45.0%
! CATCCGATTCGCAGGTAAAA+TGG + chr2_1:12774848-12774867 None:intergenic 45.0%
TGTGAATCGGAAGTGGTCTT+TGG + chr2_1:12775193-12775212 None:intergenic 45.0%
AAGAGAGGTTGCGATTGAGA+CGG - chr2_1:12775497-12775516 Msa0195810:intron 45.0%
! CATCCGGTTTGCAGGTAAAA+TGG - chr2_1:12775620-12775639 Msa0195810:intron 45.0%
! GACCCATTTTACCTGCAAAC+CGG + chr2_1:12775626-12775645 None:intergenic 45.0%
TGGACTTGGAGTGTGTCTAA+AGG - chr2_1:12775663-12775682 Msa0195810:CDS 45.0%
CATTGGGAATTGTGTCTCGT+AGG - chr2_1:12775908-12775927 Msa0195810:intron 45.0%
CCATCACTTACCTAGTTCGT+TGG + chr2_1:12776060-12776079 None:intergenic 45.0%
CCAACGAACTAGGTAAGTGA+TGG - chr2_1:12776057-12776076 Msa0195810:CDS 45.0%
GCTCTTACCAGTGCTAAAAG+TGG + chr2_1:12777239-12777258 None:intergenic 45.0%
! GCAGGTTCTTGACATGGTTT+TGG - chr2_1:12777400-12777419 Msa0195810:intron 45.0%
TTTGGGAAAAGCAGTGGTGG+TGG + chr2_1:12772540-12772559 None:intergenic 50.0%
! TGGTCTAAGTGGATTCCCAC+TGG - chr2_1:12772666-12772685 Msa0195810:three_prime_UTR 50.0%
TCAGCGGCAAAAGAACCAGT+GGG + chr2_1:12772684-12772703 None:intergenic 50.0%
ATCAGCGGCAAAAGAACCAG+TGG + chr2_1:12772685-12772704 None:intergenic 50.0%
! AGTGCTACTGCTAGTCCCAT+TGG - chr2_1:12772726-12772745 Msa0195810:three_prime_UTR 50.0%
! CTAGCTTGGGCATTGTATGG+AGG - chr2_1:12773055-12773074 Msa0195810:intron 50.0%
CCGAGACTTGAGAGTCTATC+TGG - chr2_1:12773186-12773205 Msa0195810:CDS 50.0%
! TTCTGGTTGTTCTACCGGCA+AGG - chr2_1:12773780-12773799 Msa0195810:intron 50.0%
AGTCAAAACTGCTTGGCCAC+TGG - chr2_1:12774059-12774078 Msa0195810:intron 50.0%
TGCTAGTTGTTCAGGGGTTG+TGG + chr2_1:12774546-12774565 None:intergenic 50.0%
! TACTTGCACATCCGATTCGC+AGG + chr2_1:12774856-12774875 None:intergenic 50.0%
AGGTTCACACGGCAGATTTG+GGG + chr2_1:12775116-12775135 None:intergenic 50.0%
CAGGTTCACACGGCAGATTT+GGG + chr2_1:12775117-12775136 None:intergenic 50.0%
ACAGGTTCACACGGCAGATT+TGG + chr2_1:12775118-12775137 None:intergenic 50.0%
AGAGCACATGCTAGAGACAG+CGG - chr2_1:12775472-12775491 Msa0195810:intron 50.0%
GTCTCAATCGCAACCTCTCT+TGG + chr2_1:12775498-12775517 None:intergenic 50.0%
TCATCTCAACCTCCCCTTGA+TGG + chr2_1:12775532-12775551 None:intergenic 50.0%
! AACTTGCACATCCGGTTTGC+AGG - chr2_1:12775612-12775631 Msa0195810:intron 50.0%
CAGGTCCGGAACATTGCATT+GGG - chr2_1:12775892-12775911 Msa0195810:intron 50.0%
!! GACGTCCCCTTTAAAACCTC+TGG + chr2_1:12777083-12777102 None:intergenic 50.0%
! ATGGTGGGAACCAGAGTGTG+TGG + chr2_1:12772458-12772477 None:intergenic 55.0%
!! AAAAGCAGTGGTGGTGGTGG+TGG + chr2_1:12772534-12772553 None:intergenic 55.0%
!! GTCGTGTTTGGTGTCTGGGT+CGG - chr2_1:12773283-12773302 Msa0195810:intron 55.0%
GTTCAGGGGTTGTGGTTGTG+AGG + chr2_1:12774538-12774557 None:intergenic 55.0%
GGTTCACACGGCAGATTTGG+GGG + chr2_1:12775115-12775134 None:intergenic 55.0%
TGTCTCCATCGCTCCATCGA+CGG + chr2_1:12775347-12775366 None:intergenic 55.0%
GATGGAGCGATGGAGACAAC+AGG - chr2_1:12775349-12775368 Msa0195810:intron 55.0%
GAGGTTGCGATTGAGACGGT+CGG - chr2_1:12775501-12775520 Msa0195810:intron 55.0%
AGGGTGTGACCTCTGACCAT+AGG - chr2_1:12775694-12775713 Msa0195810:CDS 55.0%
GCAGGTCCGGAACATTGCAT+TGG - chr2_1:12775891-12775910 Msa0195810:intron 55.0%
! CCTGGGAAATTTGCTCTGCG+TGG + chr2_1:12776690-12776709 None:intergenic 55.0%
CCACGCAGAGCAAATTTCCC+AGG - chr2_1:12776687-12776706 Msa0195810:intron 55.0%
CTCTGGCTATCATAGCCTGC+AGG + chr2_1:12777066-12777085 None:intergenic 55.0%
CTGCAGGCTATGATAGCCAG+AGG - chr2_1:12777064-12777083 Msa0195810:intron 55.0%
!! GGGAAAAGCAGTGGTGGTGG+TGG + chr2_1:12772537-12772556 None:intergenic 60.0%
ACTCCACCACCTGCAGTGAC+CGG - chr2_1:12774256-12774275 Msa0195810:intron 60.0%
TTTGGAAGCCCGGTCACTGC+AGG + chr2_1:12774268-12774287 None:intergenic 60.0%
ACAAGCCGTCGATGGAGCGA+TGG - chr2_1:12775339-12775358 Msa0195810:intron 60.0%
CTAGAGACAGCGGCCAAGAG+AGG - chr2_1:12775482-12775501 Msa0195810:intron 60.0%
GTTGCGATTGAGACGGTCGG+CGG - chr2_1:12775504-12775523 Msa0195810:intron 60.0%
CTCCACCACCTGCAGTGACC+GGG - chr2_1:12774257-12774276 Msa0195810:intron 65.0%
TCAGCGCGACAAGCCGTCGA+TGG - chr2_1:12775331-12775350 Msa0195810:intron 65.0%
ACGGTCGGCGGCACCATCAA+GGG - chr2_1:12775516-12775535 Msa0195810:intron 65.0%
AGCCCGGTCACTGCAGGTGG+TGG + chr2_1:12774262-12774281 None:intergenic 70.0%
GGAAGCCCGGTCACTGCAGG+TGG + chr2_1:12774265-12774284 None:intergenic 70.0%
GACGGTCGGCGGCACCATCA+AGG - chr2_1:12775515-12775534 Msa0195810:intron 70.0%
CGGTCGGCGGCACCATCAAG+GGG - chr2_1:12775517-12775536 Msa0195810:intron 70.0%
TCGGCGGCACCATCAAGGGG+AGG - chr2_1:12775520-12775539 Msa0195810:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 12772438 12777882 12772438 ID=Msa0195810;Name=Msa0195810
chr2_1 mRNA 12772438 12777882 12772438 ID=Msa0195810-mRNA-1;Parent=Msa0195810;Name=Msa0195810-mRNA-1;_AED=0.03;_eAED=0.03;_QI=54|1|1|1|0.85|0.75|8|507|375
chr2_1 exon 12772438 12772916 12772438 ID=Msa0195810-mRNA-1:exon:5545;Parent=Msa0195810-mRNA-1
chr2_1 exon 12773070 12773250 12773070 ID=Msa0195810-mRNA-1:exon:5544;Parent=Msa0195810-mRNA-1
chr2_1 exon 12773612 12773676 12773612 ID=Msa0195810-mRNA-1:exon:5543;Parent=Msa0195810-mRNA-1
chr2_1 exon 12774350 12774425 12774350 ID=Msa0195810-mRNA-1:exon:5542;Parent=Msa0195810-mRNA-1
chr2_1 exon 12775644 12775808 12775644 ID=Msa0195810-mRNA-1:exon:5541;Parent=Msa0195810-mRNA-1
chr2_1 exon 12775921 12776157 12775921 ID=Msa0195810-mRNA-1:exon:5540;Parent=Msa0195810-mRNA-1
chr2_1 exon 12776437 12776553 12776437 ID=Msa0195810-mRNA-1:exon:5539;Parent=Msa0195810-mRNA-1
chr2_1 exon 12777514 12777882 12777514 ID=Msa0195810-mRNA-1:exon:5538;Parent=Msa0195810-mRNA-1
chr2_1 five_prime_UTR 12777829 12777882 12777829 ID=Msa0195810-mRNA-1:five_prime_utr;Parent=Msa0195810-mRNA-1
chr2_1 CDS 12777514 12777828 12777514 ID=Msa0195810-mRNA-1:cds;Parent=Msa0195810-mRNA-1
chr2_1 CDS 12776437 12776553 12776437 ID=Msa0195810-mRNA-1:cds;Parent=Msa0195810-mRNA-1
chr2_1 CDS 12775921 12776157 12775921 ID=Msa0195810-mRNA-1:cds;Parent=Msa0195810-mRNA-1
chr2_1 CDS 12775644 12775808 12775644 ID=Msa0195810-mRNA-1:cds;Parent=Msa0195810-mRNA-1
chr2_1 CDS 12774350 12774425 12774350 ID=Msa0195810-mRNA-1:cds;Parent=Msa0195810-mRNA-1
chr2_1 CDS 12773612 12773676 12773612 ID=Msa0195810-mRNA-1:cds;Parent=Msa0195810-mRNA-1
chr2_1 CDS 12773098 12773250 12773098 ID=Msa0195810-mRNA-1:cds;Parent=Msa0195810-mRNA-1
chr2_1 three_prime_UTR 12773070 12773097 12773070 ID=Msa0195810-mRNA-1:three_prime_utr;Parent=Msa0195810-mRNA-1
chr2_1 three_prime_UTR 12772438 12772916 12772438 ID=Msa0195810-mRNA-1:three_prime_utr;Parent=Msa0195810-mRNA-1
Gene Sequence

>Msa0195810

ATGAACTGTAACCATGCCACTTTCCTTTTGGTTTCATTGCCACCACCACCACCACTGCTTTTCCCAAAATTCGATTATCCAGTGCCAAAGAAAACTCTTTTAACACTAAACCTGAAGAGAAATCCAATTATAAGAATCAAAGCTTCAAAAGATGATAATGGGCCATCACCAAATTGGTCTAAGTGGATTCCCACTGGTTCTTTTGCCGCTGATAAAGTTTTCAGATTGATTTCAAGTGCTACTGCTAGTCCCATTGGACAGTTTGTTTCTTCCCCCACTACGTTTCTTCACTCTATTGATCCACGAGTTAAATTGGTATGGCTTTTAGTTCTGGTTGTTCTACCGGCAAGGTCGCATATAATTATGCGATTTGGATTAGTAGCATACTTGACTTTGCTTTCAATTTGGGTTCTACCAAGAAATACTTGGAAGGATCAATTGGGTCGTGTTTATTTTCTGTCGGCATTGTTATTCATAACATTAGGACTGGGTTCAGATGGCGTGCCTGCACTTGTTCAGTCAAGAACTCCACCACCTGCAGTGACCGGGCTTCCAAATCTTCCTATATCTTTAACAGGTTATTCATATGTAATCTCAAAGTTAGGTCCATTAACCTTTACGAGGAAAGGATTATCTGTAGGAAGCACTGTTGCATGTTTGACTTTTACAGTATTTCAAAGTGCAAGTCTCTGCCTCACAACCACAACCCCTGAACAACTAGCATCTGCATTGCGATGGTTCGTGCTTCCTCTGAGATACATAGGCGTATCTGTATCAGAAATCGTGCTTACCCTTTTACTGTCATTGAGATTTATCAGTCTAGTTTTTGATGAGGTCCGGAACATTGCATTGGGAATTGTGTCTCGTAGGGTAAATTGGAAACAACTGACTGCTATGGAGACAATTGATATTTTCTTTAACTACTTCCGTCGCATCTTCAAAAATATTTTCAGCCACGCAGAGCAAATTTCCCAGGCTATGATAGCCAGAGGTTTTAAAGGGGACGTCGAGAATCACAAAATTTATTTCTTGTCAGAATCATCTTTTGGGATGGCAGATATTGTATGTTTGTTGAACTTGACAGTTGTCATAGGAGCTTCTCTTCTGTCTGAGTACTACCTTGTCTAA

Protein sequence

>Msa0195810

MNCNHATFLLVSLPPPPPLLFPKFDYPVPKKTLLTLNLKRNPIIRIKASKDDNGPSPNWSKWIPTGSFAADKVFRLISSATASPIGQFVSSPTTFLHSIDPRVKLVWLLVLVVLPARSHIIMRFGLVAYLTLLSIWVLPRNTWKDQLGRVYFLSALLFITLGLGSDGVPALVQSRTPPPAVTGLPNLPISLTGYSYVISKLGPLTFTRKGLSVGSTVACLTFTVFQSASLCLTTTTPEQLASALRWFVLPLRYIGVSVSEIVLTLLLSLRFISLVFDEVRNIALGIVSRRVNWKQLTAMETIDIFFNYFRRIFKNIFSHAEQISQAMIARGFKGDVENHKIYFLSESSFGMADIVCLLNLTVVIGASLLSEYYLV*