AlfalfaGEDB | Msa0527700

M. sativa cultivar zhongmu-4 / Msa0527700

KEGG: K11293
GO: GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141
PFAM: PF00400.35

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0527700	XP_003596786.1	93.246	992	33	1	1	958	1	992	0.0	1894

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0527700	sp\|Q9LXN4\|HIRA_ARATH	67.554	977	253	11	1	934	1	956	0.0	1297

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0527700	G7ITP8	93.246	992	33	1	1	958	1	992	0.0	1894

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036870	Msa0527700	0.801178	1.017631e-48	-8.615850e-47
Msa0061380	Msa0527700	0.810076	1.379477e-50	-8.615850e-47
Msa0136650	Msa0527700	0.814224	1.718034e-51	-8.615850e-47
Msa0174450	Msa0527700	0.814549	1.456121e-51	-8.615850e-47
Msa0200960	Msa0527700	0.820621	6.225075e-53	-8.615850e-47
Msa0225460	Msa0527700	0.823454	1.372950e-53	-8.615850e-47
Msa0225680	Msa0527700	0.826466	2.671815e-54	-8.615850e-47
Msa0258680	Msa0527700	0.818675	1.732226e-52	-8.615850e-47
Msa0261340	Msa0527700	0.819955	8.851394e-53	-8.615850e-47
Msa0297930	Msa0527700	0.996006	2.534481e-222	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0527700	MtrunA17_Chr2g0321211	93.246	992	33	1	1	958	1	992	0.0	1894
Msa0527700	MtrunA17_Chr4g0026671	76.923	988	175	9	1	941	1	982	0.0	1514
Msa0527700	MtrunA17_Chr8g0384161	25.521	384	210	9	11	338	11	374	1.82e-27	119
Msa0527700	MtrunA17_Chr3g0136971	26.627	169	96	2	16	184	464	604	3.85e-15	80.1
Msa0527700	MtrunA17_Chr5g0414581	33.333	165	101	4	16	174	246	407	1.74e-12	70.9
Msa0527700	MtrunA17_Chr5g0401661	23.770	244	135	4	16	220	399	630	1.26e-11	68.6
Msa0527700	MtrunA17_Chr8g0352821	27.528	178	99	4	9	184	305	454	1.83e-11	68.2
Msa0527700	MtrunA17_Chr4g0053651	24.180	244	134	4	16	220	292	523	2.41e-11	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0527700	AT3G44530.2	67.554	977	253	11	1	934	1	956	0.0	1297
Msa0527700	AT3G44530.1	65.381	1011	252	13	1	934	1	990	0.0	1276
Msa0527700	AT3G44530.3	65.274	838	227	11	140	934	2	818	0.0	1048
Msa0527700	AT3G44530.4	65.674	705	212	10	239	934	1	684	0.0	876
Msa0527700	AT5G64630.1	33.708	178	103	3	7	184	9	171	1.90e-26	113
Msa0527700	AT5G64630.2	33.708	178	103	3	7	184	9	171	2.09e-26	114
Msa0527700	AT5G64630.3	36.134	119	60	2	66	184	10	112	7.73e-17	84.7
Msa0527700	AT5G64630.3	21.322	469	271	13	28	460	20	426	8.48e-14	75.1
Msa0527700	AT5G25150.1	26.627	169	96	2	16	184	463	603	5.57e-13	73.6
Msa0527700	AT5G25150.2	26.627	169	96	2	16	184	463	603	6.20e-13	73.2

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Find 286 sgRNAs with CRISPR-Local

Find 489 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGAAATTGTATGCACA+AGG	0.615864	4_1:-330214	Msa0527700:CDS
AAAGAATTCTTCTAATGCCC+AGG	0.539984	4_1:-331426	Msa0527700:CDS
AAAGAGTATAGACGCCCTGA+TGG	0.611152	4_1:-330701	Msa0527700:CDS
AAAGGCTTCTTGCAACCCTG+CGG	0.632568	4_1:-332546	Msa0527700:CDS
AAAGGGATCCCTTTATTTAT+GGG	0.322149	4_1:-329572	Msa0527700:CDS
AAAGTCTCGACACTTCTCAA+AGG	0.635338	4_1:-332564	Msa0527700:CDS
AAAGTGTTGTAGATTTATCC+TGG	0.505238	4_1:-331238	Msa0527700:intron
AAAGTTGTGATGACTCTGAG+AGG	0.694526	4_1:-332367	Msa0527700:CDS
AAATATTTGGCTCGGAAGCC+TGG	0.437218	4_1:-329088	Msa0527700:CDS
AAATGCTTAGCAACAAATAA+AGG	0.390314	4_1:+331269	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAGTTTACATGATGTATTC+TGG	-	chr4_1:327922-327941	Msa0527700:intron	30.0%
ATATGGCAATTGTGATTGAT+TGG	-	chr4_1:327999-328018	Msa0527700:CDS	30.0%
AAAACTATATTGGCGCTATA+TGG	+	chr4_1:328347-328366	None:intergenic	30.0%
ATTCCAAAGAAAGAAAAAGC+CGG	+	chr4_1:328880-328899	None:intergenic	30.0%
TAAAGTAGGTCGATCTTAAT+TGG	-	chr4_1:329017-329036	Msa0527700:intron	30.0%
CATTGGTCATATTCCATATA+TGG	+	chr4_1:329090-329109	None:intergenic	30.0%
CATATATGGAATATGACCAA+TGG	-	chr4_1:329088-329107	Msa0527700:CDS	30.0%
ATACAATGACGAGATGTAAT+TGG	+	chr4_1:329347-329366	None:intergenic	30.0%
TCTCACTACATAGATAATTG+AGG	+	chr4_1:329400-329419	None:intergenic	30.0%
CCTTACAATATTATTGCCAT+CGG	-	chr4_1:329783-329802	Msa0527700:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	327363	333780	327363	ID=Msa0527700;Name=Msa0527700
chr4_1	mRNA	327363	333780	327363	ID=Msa0527700-mRNA-1;Parent=Msa0527700;Name=Msa0527700-mRNA-1;_AED=0.05;_eAED=0.05;_QI=243\|0.88\|0.8\|1\|1\|1\|10\|220\|958
chr4_1	exon	327363	327825	327363	ID=Msa0527700-mRNA-1:exon:34;Parent=Msa0527700-mRNA-1
chr4_1	exon	327959	328076	327959	ID=Msa0527700-mRNA-1:exon:33;Parent=Msa0527700-mRNA-1
chr4_1	exon	328406	328528	328406	ID=Msa0527700-mRNA-1:exon:32;Parent=Msa0527700-mRNA-1
chr4_1	exon	329079	329319	329079	ID=Msa0527700-mRNA-1:exon:31;Parent=Msa0527700-mRNA-1
chr4_1	exon	329488	329698	329488	ID=Msa0527700-mRNA-1:exon:30;Parent=Msa0527700-mRNA-1
chr4_1	exon	330112	331120	330112	ID=Msa0527700-mRNA-1:exon:29;Parent=Msa0527700-mRNA-1
chr4_1	exon	331239	331616	331239	ID=Msa0527700-mRNA-1:exon:28;Parent=Msa0527700-mRNA-1
chr4_1	exon	331949	332118	331949	ID=Msa0527700-mRNA-1:exon:27;Parent=Msa0527700-mRNA-1
chr4_1	exon	332351	332626	332351	ID=Msa0527700-mRNA-1:exon:26;Parent=Msa0527700-mRNA-1
chr4_1	exon	333430	333780	333430	ID=Msa0527700-mRNA-1:exon:25;Parent=Msa0527700-mRNA-1
chr4_1	five_prime_UTR	333538	333780	333538	ID=Msa0527700-mRNA-1:five_prime_utr;Parent=Msa0527700-mRNA-1
chr4_1	CDS	333430	333537	333430	ID=Msa0527700-mRNA-1:cds;Parent=Msa0527700-mRNA-1
chr4_1	CDS	332351	332626	332351	ID=Msa0527700-mRNA-1:cds;Parent=Msa0527700-mRNA-1
chr4_1	CDS	331949	332118	331949	ID=Msa0527700-mRNA-1:cds;Parent=Msa0527700-mRNA-1
chr4_1	CDS	331239	331616	331239	ID=Msa0527700-mRNA-1:cds;Parent=Msa0527700-mRNA-1
chr4_1	CDS	330112	331120	330112	ID=Msa0527700-mRNA-1:cds;Parent=Msa0527700-mRNA-1
chr4_1	CDS	329488	329698	329488	ID=Msa0527700-mRNA-1:cds;Parent=Msa0527700-mRNA-1
chr4_1	CDS	329079	329319	329079	ID=Msa0527700-mRNA-1:cds;Parent=Msa0527700-mRNA-1
chr4_1	CDS	328406	328528	328406	ID=Msa0527700-mRNA-1:cds;Parent=Msa0527700-mRNA-1
chr4_1	CDS	327959	328076	327959	ID=Msa0527700-mRNA-1:cds;Parent=Msa0527700-mRNA-1
chr4_1	CDS	327583	327825	327583	ID=Msa0527700-mRNA-1:cds;Parent=Msa0527700-mRNA-1
chr4_1	three_prime_UTR	327363	327582	327363	ID=Msa0527700-mRNA-1:three_prime_utr;Parent=Msa0527700-mRNA-1

Gene Sequence

>Msa0527700

ATGATTGCTGAAAAACCTAGTTGGCTTAGACATGAGGGTATGCAAATTTTTTCCATTGATGTTCAACCTGGTGGACTCAGATTTGCTACTGGTGGTGGTGACCACAAGGTTCGCATATGGAATATGAAATCTCTTGGTGCGGACATGGAAAGTCTCGACACTTCTCAAAGGCTTCTTGCAACCCTGCGGGATCACTTTGGGTCTGTCAATTGTGTTAGGTGGGCCAAGCATGGAAAGTTTGTTGCATCAGGGTCTGATGATCAGGCGATATTAATACATGAGAGGAAGCCTGGTTCAGGAACCACGGAATTTGGCAGTGGAGAGCCTCCAGATATTGAAAACTGGAAAGTTGTGATGACTCTGAGAGGGCACTCTGCTGATGTGGTCGATCTTAATTGGTCTCCCGATGATTCTTCTTTGGCTAGTGGGAGTTTGGACAACACCATCCATATATGGAATATGACCAATGGAATTTGCACTGCTGTTTTAAGGGGCCACTCTAGCCTTGTTAAGGGGGTTGCGTGGGATCCTATTGGCTCTTTCATAGCAAGTCAGCGGCTTGGATGGTCTCCATGTGGTCATTTCATTACCACTACTCATGGTTTCAAGAAGCCTAGGCATTCTGCCCCAGTTCTTGAAAGAGGGGAATGGTCTGCAACATTTGATTTCTTAGGACACAATGCTCCGATAATTGTGGTGAGGTTCAACCATTTTCTGTTCAAAAAGAATTCTTCTAATGCCCAGGAAGGGAAATCTGAGACTGTCGGGTGGAGCAACGGTGCTTCCAAGACTGGATCCAAAGAGCCACAGCCTTACAATATTATTGCCATCGGAAGTCAGGACCGGACAATAACAGTGTGGACTACTGCAAGTCCCCGTCCTTTATTTGTTGCTAAGCATTTTTTTACTCAAAGTGTTGTAGATTTATCCTGGAGCCCCGATGGATATTCACTTTTTGCATGTTCCTTGGATGGATCTGTGGGTGCATTTCATTTTGAGGCAAAAGAACTTGGTCAGAGTTTAAATGATGCTGAGCTGGATGAGTTGAAGAGAAGTCGTTATGGCGATGTGAGTGGGCGTAAAATTAATTTAGCAGAAAGTCCGGCACAGTTACTTCTAGAAGCAGCTTCTACCAAACAAACATCGGCCAAAAAGGCGGTTTCTAATGTCCAACAAAAGAAGACAACGCCAAAGGCTTGTGTTAGTGCAGGGAACACTACAAAGAATTCCAAGCCTCAAGTTAACGACGTTAAGGAGACCGGAGGTTCTGTAGGCAATGAGCCAAACATGGTTACAACCACTGGTCCGATTTCTGGTCCAGTTAAGCAAAAAGAGTATAGACGCCCTGATGGCCGTAAAAGAATTATTCCAGAAGTAGTTGGAGTGCCTGTTCAACCGGAAAGCATTTCCAGTGCAGCTCAGCAACTTAATTTTCCTATTGTCTATTCTGAACACATAAAGAGTTCTGACAGAGCTATTTCTAATAATGATGACATAAGAGCTAGTCAATTGGGAGGATCACATATTAGACATTCAGATTTAAAAGAACGTTCTGGGGTTACTGCTAGGGCCACAATTTCTGACGGCCTGATAATTGAGAAAGTTCCAGATACATCCGGTGATGGAGGCATCAATGTTCAACAGATGGGAAATTCAATGACTTCTAATTCTTTAGCTGCTTGTAGTTCTACACTTTCTATTAGAGTATTTGATAAGAAAGGAGGGGACGGTACTTCACCTGTTCTTTTGGAAGCACGTCCAAGAGAACACACTGTAAATGACATTGCAGGGCTGGCAAATACGCCAATGATGAAAGAAACAGAAATTGTATGCACAAGGGGGGATCAAACACTTTGGTCTGATAGGATATCAGGAAAAGTCACTGTTTTAGCTGGCAATGCGAATTTCTGGGCTGTTGGGTGTGAAGATGGATGTCTGCAGATTTACACTAAGTGTGGGAGACGTGCAATGCCTACAATGATGATGGGATCATCTGCCACATTTATAGACTGTGATGAATGCTGGACATTGATGCTGGTGACAAGAAAGGGATCCCTTTATTTATGGGATTTATTGAACCGAACTTGTCTCCTTCAAGATTCATTGACTTCTTTAGTTGCTTCAAGTCCTAACCCATCCACTAAAAATGAAGGAACTATTAAAGTTATTTCTGCAAAGCTATCAAAGTCTGGTTCCCCGCTTGTTGTGTTGGCAACACGCCATGCTTTCCTATTTGACATGAATGTCAAGTGTTGGCTTAGGGTTGCAGATGATAGCTTCCCTGCATCAAATTTTGCCAGCTCTTGGAGTTTGGGTTCAATTCAAAGTGGTGAGCTGGCTGCTTTACAGGTTGATCTTAGAAAATATTTGGCTCGGAAGCCTGGTTGGACAAGAATGACTGATGATGGGGTGCAGACACGTGCCCATTTGGAAGCTCAATTGGCTTCATCCTTGGCTTTGGGATCTGCCAATGAATATCGCCAATGCCTATTGTCCTATGTACGCTTTCTTGCAAGGGAAGCAGATGAATCTCGATTAAGGGAAGTCTGTGAGGGTTTCCTTGGACCTCCAACAGGGATGGCTGAGGAACCATCTTCAGATTCAAATAACTTAGCATGGGATCCTTTTGTTCTTGGAATGAGGAAACACAAGCTTCTCAGGGAAGATATTCTTCCATCGATGGCGTCGAACAGAAAAGTCCAGAGATTGCTAAATGAATTCATGGACCTGTTATCTGAATATGAGATAGTTGATCCAAATCAAGACCAAATGGCTCTCATTTTACCAAAGTCATCTTCACCAGCAACCAAACCGATTGAGAACAGTTCAGTAGCAATCGACAAGGAGGACGGTGCTCAAGCAAAGACATTGGATTAA

Protein sequence

>Msa0527700

MIAEKPSWLRHEGMQIFSIDVQPGGLRFATGGGDHKVRIWNMKSLGADMESLDTSQRLLATLRDHFGSVNCVRWAKHGKFVASGSDDQAILIHERKPGSGTTEFGSGEPPDIENWKVVMTLRGHSADVVDLNWSPDDSSLASGSLDNTIHIWNMTNGICTAVLRGHSSLVKGVAWDPIGSFIASQRLGWSPCGHFITTTHGFKKPRHSAPVLERGEWSATFDFLGHNAPIIVVRFNHFLFKKNSSNAQEGKSETVGWSNGASKTGSKEPQPYNIIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGSVGAFHFEAKELGQSLNDAELDELKRSRYGDVSGRKINLAESPAQLLLEAASTKQTSAKKAVSNVQQKKTTPKACVSAGNTTKNSKPQVNDVKETGGSVGNEPNMVTTTGPISGPVKQKEYRRPDGRKRIIPEVVGVPVQPESISSAAQQLNFPIVYSEHIKSSDRAISNNDDIRASQLGGSHIRHSDLKERSGVTARATISDGLIIEKVPDTSGDGGINVQQMGNSMTSNSLAACSSTLSIRVFDKKGGDGTSPVLLEARPREHTVNDIAGLANTPMMKETEIVCTRGDQTLWSDRISGKVTVLAGNANFWAVGCEDGCLQIYTKCGRRAMPTMMMGSSATFIDCDECWTLMLVTRKGSLYLWDLLNRTCLLQDSLTSLVASSPNPSTKNEGTIKVISAKLSKSGSPLVVLATRHAFLFDMNVKCWLRVADDSFPASNFASSWSLGSIQSGELAALQVDLRKYLARKPGWTRMTDDGVQTRAHLEAQLASSLALGSANEYRQCLLSYVRFLAREADESRLREVCEGFLGPPTGMAEEPSSDSNNLAWDPFVLGMRKHKLLREDILPSMASNRKVQRLLNEFMDLLSEYEIVDPNQDQMALILPKSSSPATKPIENSSVAIDKEDGAQAKTLD*