AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0531220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0531220 MtrunA17_Chr4g0004221 95.748 682 21 3 1 675 1 681 0.0 1311
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0531220 AT1G80000.4 37.807 693 304 25 8 675 7 597 4.47e-94 304
Msa0531220 AT1G80000.1 37.807 693 304 26 8 675 7 597 4.95e-94 304
Msa0531220 AT1G80000.2 37.807 693 304 26 8 675 7 597 4.95e-94 304
Msa0531220 AT1G80000.3 37.807 693 304 26 8 675 7 597 4.95e-94 304
Msa0531220 AT1G15280.2 33.671 692 321 29 5 676 1 574 1.18e-48 181
Msa0531220 AT1G15280.1 34.104 692 317 29 5 676 1 573 1.49e-47 177

Find 271 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGGTGCTGCAGGAGCTTT+AGG 0.093760 4_1:-5427377 Msa0531220:CDS
TTCAAGAAACTTTGCATAAA+AGG 0.130703 4_1:-5430835 Msa0531220:five_prime_UTR
CTTCTTGAATTCAGTTAATT+TGG 0.138584 4_1:-5425855 Msa0531220:three_prime_UTR
TCCCCATTTCTTGTCATCTT+TGG 0.156157 4_1:+5429589 None:intergenic
AATAAATTTCAAGACTTTCT+AGG 0.173388 4_1:-5426665 Msa0531220:intron
TTTCCCAGGCCTGCTGGGCC+TGG 0.179598 4_1:-5428659 Msa0531220:CDS
AGAAGGTAATTATCTGATTT+TGG 0.196276 4_1:+5431054 None:intergenic
TCCTGCTGGTGCTGCCAATT+TGG 0.200071 4_1:+5428879 None:intergenic
AGATTCTGGTGAGGTTAATT+TGG 0.215442 4_1:-5430259 Msa0531220:CDS
TCAATTAATTCACTTGATTC+TGG 0.221617 4_1:-5428428 Msa0531220:CDS
CCTTTCAATTTCTTCAATTA+GGG 0.226988 4_1:-5430916 Msa0531220:five_prime_UTR
TCCTTTCAATTTCTTCAATT+AGG 0.230665 4_1:-5430917 Msa0531220:five_prime_UTR
AATGGGTGCTGCTGGAAATA+TGG 0.244592 4_1:-5428291 Msa0531220:CDS
CTGGTGCTGCAGGAGCTTTA+GGG 0.252912 4_1:-5427376 Msa0531220:CDS
AAACCCTAGATTGGAGATTT+AGG 0.253364 4_1:+5430966 None:intergenic
TTGGCACCGCCTGGATCTTC+TGG 0.261857 4_1:-5428704 Msa0531220:CDS
AATGAGATAGATTGTGAAAA+TGG 0.263454 4_1:+5430891 None:intergenic
TTCCCAGGCCTGCTGGGCCT+GGG 0.264948 4_1:-5428658 Msa0531220:CDS
ACATGCATGATGACCGCTTT+AGG 0.265341 4_1:-5430185 Msa0531220:CDS
CTTCCCCACCAATGCACCTT+TGG 0.265416 4_1:+5428373 None:intergenic
AGATATTCGGAGATGAATTT+TGG 0.283446 4_1:-5426876 Msa0531220:intron
GGTTAATTTGGAGGAGAAAA+AGG 0.297971 4_1:-5430247 Msa0531220:CDS
TCTCCCAGGCCCAGCAGGCC+TGG 0.299414 4_1:+5428655 None:intergenic
GGTAAGAAGGTGGGGAAGTT+TGG 0.301540 4_1:+5428251 None:intergenic
GTTATGCAGGCCTTACTCTT+AGG 0.302721 4_1:-5426730 Msa0531220:intron
CCAGTCTTGGCTGGTGCTGC+AGG 0.308531 4_1:-5427386 Msa0531220:CDS
AAATTTAGAGGAGACCTTCT+AGG 0.309627 4_1:-5429428 Msa0531220:intron
AGCGATCTTTGCGTCTCTTC+AGG 0.315255 4_1:+5430600 None:intergenic
GGAAAACCCTCATCCATAAC+TGG 0.318201 4_1:+5428848 None:intergenic
TGCTAATCCTCAGCTTGGTT+TGG 0.321347 4_1:-5427537 Msa0531220:CDS
CATGCATGATGACCGCTTTA+GGG 0.321585 4_1:-5430184 Msa0531220:CDS
TTGGATGCAGTCATGCAATT+TGG 0.329391 4_1:-5427620 Msa0531220:intron
GCCTATGAACAATGTTCATT+TGG 0.337723 4_1:-5428723 Msa0531220:CDS
AAAGGTGAAGGTGGGGTTGA+TGG 0.341140 4_1:-5430339 Msa0531220:CDS
AGGCCTGCTGGGCCTGGGAG+AGG 0.346448 4_1:-5428653 Msa0531220:CDS
TCAAGAAACTTTGCATAAAA+GGG 0.348530 4_1:-5430834 Msa0531220:five_prime_UTR
CACTCCTAAATCTCCAATCT+AGG 0.350586 4_1:-5430970 Msa0531220:five_prime_UTR
GCTAATCCTCAGCTTGGTTT+GGG 0.356032 4_1:-5427536 Msa0531220:CDS
GGAAGGGATTGAGCGGGGAT+TGG 0.356597 4_1:+5430937 None:intergenic
AATAGAGAGGATTACGTAGA+AGG 0.360941 4_1:+5431037 None:intergenic
AGTTGAAGAAGAAGTTTATG+AGG 0.363132 4_1:-5430364 Msa0531220:CDS
GCTCCCCAGGGTCCTGGAAG+GGG 0.366185 4_1:-5428341 Msa0531220:CDS
CTCCCAGGCCCAGCAGGCCT+GGG 0.366979 4_1:+5428656 None:intergenic
TGGTTCTGTGATTGTGGTTA+AGG 0.368642 4_1:-5430319 Msa0531220:CDS
GAAGAGCCCGAGGGGTAAAA+TGG 0.369185 4_1:+5428938 None:intergenic
CCTCAGCAATTGATAATTCA+AGG 0.369818 4_1:-5427292 Msa0531220:intron
AGAGTGAAGATCTTCGTGTT+AGG 0.371660 4_1:-5430494 Msa0531220:CDS
TGGTGGTGTGGTACCCTCTT+TGG 0.371982 4_1:-5430289 Msa0531220:CDS
GAAGGGAAATGGTGCTCCCC+AGG 0.372847 4_1:-5428354 Msa0531220:CDS
TTGATATTCCTACTAATAGT+TGG 0.373012 4_1:-5425937 Msa0531220:three_prime_UTR
TTATGGTGGGGCACAGGTAA+TGG 0.376092 4_1:-5428309 Msa0531220:CDS
ATTCAGTTAATTTGGATGAA+TGG 0.377479 4_1:-5425847 Msa0531220:three_prime_UTR
AGGAAATTTCAGTGCAAGAT+AGG 0.381935 4_1:-5429553 Msa0531220:CDS
ACAGATGTGGCCTCAGAATC+AGG 0.383483 4_1:-5428401 Msa0531220:CDS
TAAACAAAAGGTCCCCTTCC+AGG 0.390813 4_1:+5428329 None:intergenic
GGCCCAGCAGGCCTGGGAAA+AGG 0.391455 4_1:+5428662 None:intergenic
GAAGGGATTGAGCGGGGATT+GGG 0.392390 4_1:+5430938 None:intergenic
GAAGAAGAGGAAAGAGGGGC+AGG 0.394336 4_1:-5430540 Msa0531220:CDS
AGGCCAGCATCCTGGTGGTA+TGG 0.395524 4_1:-5427597 Msa0531220:CDS
CCATTTGCTGTGCCCACTGC+TGG 0.395842 4_1:-5430216 Msa0531220:CDS
TATGGTGGGGCACAGGTAAT+GGG 0.396131 4_1:-5428308 Msa0531220:CDS
AAAACAATACCCAACAATAA+AGG 0.396490 4_1:+5425982 None:intergenic
GCGGTCATCATGCATGTAAA+AGG 0.402067 4_1:+5430191 None:intergenic
TTTCTTGAATCGATTGAAGT+TGG 0.403091 4_1:+5430849 None:intergenic
GCCAAATGAACATTGTTCAT+AGG 0.404842 4_1:+5428722 None:intergenic
CTTCCTTTCACAACAACCTT+AGG 0.405006 4_1:+5429258 None:intergenic
AGTCCAAAGATGACAAGAAA+TGG 0.406183 4_1:-5429592 Msa0531220:CDS
TCTTTGGAAGAAGAAGATTC+TGG 0.408273 4_1:-5430273 Msa0531220:CDS
GGTTGGTAATTCATCTGTAA+TGG 0.408994 4_1:+5428620 None:intergenic
CGGTGCTTACAGTCGTCAAC+CGG 0.413767 4_1:-5427321 Msa0531220:CDS
GGCCAGCATCCTGGTGGTAT+GGG 0.414205 4_1:-5427596 Msa0531220:CDS
CAGGAATATTCACCCAGTTA+TGG 0.417573 4_1:-5428861 Msa0531220:CDS
ATATGAGGAAGAAGAGTATG+AGG 0.421479 4_1:-5430391 Msa0531220:CDS
GAGGACATGTTCGAGGAAAC+AGG 0.423250 4_1:-5429362 Msa0531220:CDS
ACAAAACAATACAATTCATC+GGG 0.424815 4_1:-5428819 Msa0531220:CDS
GCACAGGTAATGGGTGCTGC+TGG 0.425938 4_1:-5428299 Msa0531220:CDS
TGTCTTCAAAGACTGTTGTT+TGG 0.428990 4_1:-5425796 Msa0531220:three_prime_UTR
AACTTCCCCACCTTCTTACC+AGG 0.429647 4_1:-5428248 Msa0531220:intron
TGCTCCCCAGGGTCCTGGAA+GGG 0.431029 4_1:-5428342 Msa0531220:CDS
GTTGGTAATTCATCTGTAAT+GGG 0.432266 4_1:+5428621 None:intergenic
GAGTGAAGATCTTCGTGTTA+GGG 0.433121 4_1:-5430493 Msa0531220:CDS
TGAGGAAGAAGAAGAATATG+AGG 0.435642 4_1:-5430406 Msa0531220:CDS
AGAATTCGTGGCACTGGTCG+TGG 0.437304 4_1:-5429384 Msa0531220:CDS
GCTGTTGGCATGGCATTCCC+TGG 0.440100 4_1:-5427566 Msa0531220:CDS
AGCTGGACCATTCCTTCTGT+TGG 0.440260 4_1:+5429212 None:intergenic
AATGTTCATTTGGCACCGCC+TGG 0.441008 4_1:-5428713 Msa0531220:CDS
GCACCTCTCCCAGGCCCAGC+AGG 0.441811 4_1:+5428650 None:intergenic
AATGGTGCTCCCCAGGGTCC+TGG 0.443639 4_1:-5428347 Msa0531220:CDS
TTCATAGGCTTTCCAACAGA+TGG 0.444016 4_1:+5428737 None:intergenic
ATGAAGAAGAAGAGGAAAGA+GGG 0.445157 4_1:-5430545 Msa0531220:CDS
TCACCATACCTTGCTGTTGA+CGG 0.450569 4_1:-5427341 Msa0531220:CDS
TGAAGGTAGCAATCAAAATC+AGG 0.451354 4_1:-5429283 Msa0531220:CDS
TGAGGATTAGCAACATATCC+AGG 0.451553 4_1:+5427548 None:intergenic
CGAGGGCGTGGTAGAATTCG+TGG 0.452057 4_1:-5429396 Msa0531220:CDS
ACTTGAGTATGTGAGGGAAC+AGG 0.452754 4_1:+5428599 None:intergenic
ATGCTATCTATGCAGATATT+CGG 0.452916 4_1:-5426889 Msa0531220:CDS
CTGAAGTTATTGCAGTTTGA+CGG 0.455727 4_1:-5426473 Msa0531220:three_prime_UTR
CCAGCAGTGGGCACAGCAAA+TGG 0.458085 4_1:+5430216 None:intergenic
GTCCAAAGATGACAAGAAAT+GGG 0.459003 4_1:-5429591 Msa0531220:CDS
ATGGGTGCTGCTGGAAATAT+GGG 0.460860 4_1:-5428290 Msa0531220:CDS
CAAATCATTTCAATTAATGT+TGG 0.467650 4_1:-5426914 Msa0531220:CDS
CAAATCAACCAACTATTAGT+AGG 0.468277 4_1:+5425929 None:intergenic
TTCTGGTGAGGTTAATTTGG+AGG 0.468724 4_1:-5430256 Msa0531220:CDS
TCCAAATTGGCAGCACCAGC+AGG 0.470042 4_1:-5428880 Msa0531220:CDS
GAACAAAGGGCCTAAGAGTA+AGG 0.472384 4_1:+5426720 None:intergenic
CTTCAAAGACTGTTGTTTGG+CGG 0.472436 4_1:-5425793 Msa0531220:three_prime_UTR
GGACCATTCCTTCTGTTGGT+AGG 0.474490 4_1:+5429216 None:intergenic
GCATTGGTGGGGAAGGGAAA+TGG 0.474728 4_1:-5428365 Msa0531220:CDS
GCAAGCTACTGCCCCACAGA+TGG 0.475181 4_1:-5428504 Msa0531220:CDS
ATGAGGAGAAAGGTGAAGGT+GGG 0.475188 4_1:-5430347 Msa0531220:CDS
GGTTGATGGTTCTGTGATTG+TGG 0.476840 4_1:-5430325 Msa0531220:CDS
CCTGCAGCACCAGCCAAGAC+TGG 0.478058 4_1:+5427386 None:intergenic
AACAAAACAATACAATTCAT+CGG 0.478176 4_1:-5428820 Msa0531220:CDS
TGTATATAGGCTACCAGTCT+TGG 0.479427 4_1:-5427399 Msa0531220:intron
AATTTAGAGGAGACCTTCTA+GGG 0.480298 4_1:-5429427 Msa0531220:intron
CAAAGGTGCATTGGTGGGGA+AGG 0.480447 4_1:-5428372 Msa0531220:CDS
ATCAAAAGCTGGAGAACAAA+GGG 0.484288 4_1:+5426707 None:intergenic
GAGGAAGAAGAGTATGAGGA+GGG 0.484566 4_1:-5430387 Msa0531220:CDS
GAAGAAGTTTATGAGGAGAA+AGG 0.484604 4_1:-5430357 Msa0531220:CDS
TCAATTGCTGAGGTCTGTCC+CGG 0.485782 4_1:+5427302 None:intergenic
CCTCGAAAATTACCCCTAGA+AGG 0.488132 4_1:+5429414 None:intergenic
CGTCAAACTGCAATAACTTC+AGG 0.488829 4_1:+5426474 None:intergenic
AAGGAATGGTCCAGCTCCCC+AGG 0.490093 4_1:-5429205 Msa0531220:CDS
CTCCCATACCACCAGGATGC+TGG 0.490670 4_1:+5427594 None:intergenic
TGAAGTTATTGCAGTTTGAC+GGG 0.490817 4_1:-5426472 Msa0531220:three_prime_UTR
AAGGTCCCCTTCCAGGACCC+TGG 0.492771 4_1:+5428336 None:intergenic
TATGTTGCTAATCCTCAGCT+TGG 0.493673 4_1:-5427542 Msa0531220:CDS
TTGAAAGGAAGGGATTGAGC+GGG 0.494305 4_1:+5430931 None:intergenic
CCAGGTCGATGGCCCATCTG+TGG 0.494799 4_1:+5428491 None:intergenic
TGAGGAAGAAGAGTATGAGG+AGG 0.494933 4_1:-5430388 Msa0531220:CDS
CCACAGATGGGCCATCGACC+TGG 0.498881 4_1:-5428491 Msa0531220:CDS
TTTGGCTTTACCTGATTCTG+AGG 0.500332 4_1:+5428391 None:intergenic
TATAGGCTACCAGTCTTGGC+TGG 0.501110 4_1:-5427395 Msa0531220:intron
AGGTCCCCTTCCAGGACCCT+GGG 0.502918 4_1:+5428337 None:intergenic
TAGTTACAAACCTGGTAAGA+AGG 0.503484 4_1:+5428238 None:intergenic
GAGCTGGTAAATGATGAGTA+TGG 0.506145 4_1:-5427015 Msa0531220:CDS
CAGGTCGATGGCCCATCTGT+GGG 0.507031 4_1:+5428492 None:intergenic
CAATTTGGAGGCCAGCATCC+TGG 0.508315 4_1:-5427605 Msa0531220:CDS
TGGTGCTGCAGGAGCTTTAG+GGG 0.509692 4_1:-5427375 Msa0531220:CDS
TCTTAGATCTAGGAAATCTC+AGG 0.512423 4_1:-5429080 Msa0531220:intron
AAGGTTGTTGTGAAAGGAAG+AGG 0.513988 4_1:-5429255 Msa0531220:CDS
TATGAGGAGAAAGGTGAAGG+TGG 0.514010 4_1:-5430348 Msa0531220:CDS
TAGTGATGATGAAGAAGAAG+AGG 0.514285 4_1:-5430553 Msa0531220:CDS
CAATCAAAATCAGGTGCCTA+AGG 0.515973 4_1:-5429274 Msa0531220:CDS
TTGGTAGGTTCATACCTTCG+AGG 0.516217 4_1:+5429231 None:intergenic
ATACAGCTTGTCCATGCTGA+TGG 0.517495 4_1:+5428778 None:intergenic
TGGGATCTGAAACCCTAGAT+TGG 0.517744 4_1:+5430957 None:intergenic
ACTCCTAAATCTCCAATCTA+GGG 0.521046 4_1:-5430969 Msa0531220:five_prime_UTR
TGAATAGCCTGCAGTTGTGT+TGG 0.522283 4_1:+5428563 None:intergenic
ATGGGCCATCGACCTGGTAG+TGG 0.523149 4_1:-5428485 Msa0531220:CDS
AATTGAAGAAATTGAAAGGA+AGG 0.523409 4_1:+5430920 None:intergenic
TGTTTGAAGTTAAAATAGAG+AGG 0.525736 4_1:+5431024 None:intergenic
TAGTCACGAATTGTGAAAAG+AGG 0.525908 4_1:+5430995 None:intergenic
GATGCAGTCATGCAATTTGG+AGG 0.526481 4_1:-5427617 Msa0531220:intron
CGTGGTAGAATTCGTGGCAC+TGG 0.527371 4_1:-5429390 Msa0531220:CDS
ATGGGGACATGATAAATTTG+AGG 0.528738 4_1:-5429573 Msa0531220:CDS
TTCTGCATTGGATGATGGTA+TGG 0.528786 4_1:+5429024 None:intergenic
GTGCTCCCCAGGGTCCTGGA+AGG 0.532754 4_1:-5428343 Msa0531220:CDS
TCAGATTCTGCATTGGATGA+TGG 0.532807 4_1:+5429019 None:intergenic
GGGAATGCCATGCCAACAGC+AGG 0.536272 4_1:+5427569 None:intergenic
TGCATGGTGGAAGGAGATTG+TGG 0.536675 4_1:-5429616 Msa0531220:intron
AAGCTTGTGAGAAACTAGTC+AGG 0.537115 4_1:-5426158 Msa0531220:three_prime_UTR
GGGAGTTCCTGCTGTTGGCA+TGG 0.537333 4_1:-5427576 Msa0531220:CDS
GTGCCTAAGGTTGTTGTGAA+AGG 0.537936 4_1:-5429261 Msa0531220:CDS
CAGTCTGTCCGCCCATCTGT+TGG 0.538947 4_1:-5428749 Msa0531220:CDS
CAAGAAACTTTGCATAAAAG+GGG 0.540607 4_1:-5430833 Msa0531220:five_prime_UTR
TGTGCCCCACCATAAACAAA+AGG 0.541688 4_1:+5428317 None:intergenic
CGGCAAACTTCATATGTTCA+CGG 0.542060 4_1:-5425773 Msa0531220:three_prime_UTR
TATTCACCCAGTTATGGATG+AGG 0.543178 4_1:-5428855 Msa0531220:CDS
AATAATAGAGAATATAATGA+AGG 0.543853 4_1:-5429300 Msa0531220:CDS
GCATGGTGGAAGGAGATTGT+GGG 0.544643 4_1:-5429615 Msa0531220:intron
TAAAGCCAAAGGTGCATTGG+TGG 0.544717 4_1:-5428378 Msa0531220:CDS
TGAAGAAGAAGAGGAAAGAG+GGG 0.545182 4_1:-5430544 Msa0531220:CDS
TACAAACCTGGTAAGAAGGT+GGG 0.548842 4_1:+5428242 None:intergenic
GATGAAGAAGAAGAGGAAAG+AGG 0.549176 4_1:-5430546 Msa0531220:CDS
TTTATTTACTTGAGTATGTG+AGG 0.550517 4_1:+5428592 None:intergenic
TCATAGGCTTTCCAACAGAT+GGG 0.551593 4_1:+5428738 None:intergenic
AACTGGGTGAATATTCCTGC+TGG 0.552361 4_1:+5428865 None:intergenic
GGTATGGGAGTTCCTGCTGT+TGG 0.553743 4_1:-5427581 Msa0531220:CDS
GTTTATGAGGAGAAAGGTGA+AGG 0.554427 4_1:-5430351 Msa0531220:CDS
GGAAATATGGGCATCAGTCA+AGG 0.555036 4_1:-5428278 Msa0531220:CDS
GCACCGTCAACAGCAAGGTA+TGG 0.556969 4_1:+5427338 None:intergenic
AGTTTCTCCAACACAACTGC+AGG 0.558501 4_1:-5428570 Msa0531220:CDS
AGCCCGAGGGGTAAAATGGA+GGG 0.559346 4_1:+5428942 None:intergenic
AAAGGTGCATTGGTGGGGAA+GGG 0.559886 4_1:-5428371 Msa0531220:CDS
GAATGTGGAACAGCATGAGC+AGG 0.560261 4_1:+5426496 None:intergenic
AGGTAAAGCCAAAGGTGCAT+TGG 0.560730 4_1:-5428381 Msa0531220:CDS
ATTGAAGAAATTGAAAGGAA+GGG 0.560990 4_1:+5430921 None:intergenic
AAGGGAAATGGTGCTCCCCA+GGG 0.564353 4_1:-5428353 Msa0531220:CDS
TGAGGAGAAAGGTGAAGGTG+GGG 0.564685 4_1:-5430346 Msa0531220:CDS
AATAAACCTCGCAGGCAAGT+TGG 0.565063 4_1:-5426982 Msa0531220:CDS
CACAGGGTCAGATTCTGCAT+TGG 0.566976 4_1:+5429012 None:intergenic
CTGCAATAACTTCAGGAATG+TGG 0.567233 4_1:+5426481 None:intergenic
TGAAGATGATGAGGAAATTG+AGG 0.568096 4_1:-5430424 Msa0531220:CDS
AGAATCTTCTTCTTCCAAAG+AGG 0.568259 4_1:+5430275 None:intergenic
CAAGCTACTGCCCCACAGAT+GGG 0.568630 4_1:-5428503 Msa0531220:CDS
ATTCACCCAGTTATGGATGA+GGG 0.569904 4_1:-5428854 Msa0531220:CDS
TGATATGGCTAATTCTGTTG+CGG 0.572619 4_1:-5430649 Msa0531220:exon
ACATGGACACCAGAAGATCC+AGG 0.575140 4_1:+5428695 None:intergenic
TGCAAGCCAACTTGCCTGCG+AGG 0.575451 4_1:+5426976 None:intergenic
ATTCAGAGAAGTTCTGCACC+AGG 0.576778 4_1:-5428545 Msa0531220:CDS
TCTTACAATGCGGAGACGTG+AGG 0.577025 4_1:-5430577 Msa0531220:CDS
AAAGCCAAAGGTGCATTGGT+GGG 0.577877 4_1:-5428377 Msa0531220:CDS
GAATCTTCTTCTTCCAAAGA+GGG 0.578294 4_1:+5430276 None:intergenic
GAGCCCGAGGGGTAAAATGG+AGG 0.578382 4_1:+5428941 None:intergenic
AAGTGCTCCAGATCAAAAGC+TGG 0.579144 4_1:+5426696 None:intergenic
GGGATCGGTGCACCTCTCCC+AGG 0.579608 4_1:+5428641 None:intergenic
CCCTAATTGAAGAAATTGAA+AGG 0.580436 4_1:+5430916 None:intergenic
GAAGATTGAGATCCACTACC+AGG 0.582276 4_1:+5428473 None:intergenic
CCTTGAATTATCAATTGCTG+AGG 0.582948 4_1:+5427292 None:intergenic
GCAAGATAGGCGCTATGATG+AGG 0.586479 4_1:-5429540 Msa0531220:intron
GAACCTACCAACAGAAGGAA+TGG 0.588056 4_1:-5429219 Msa0531220:CDS
GATCAAAAGCTGGAGAACAA+AGG 0.591172 4_1:+5426706 None:intergenic
TGTTGTTGATTCCATCAGCA+TGG 0.593595 4_1:-5428789 Msa0531220:CDS
TGAAAGGAAGGGATTGAGCG+GGG 0.595019 4_1:+5430932 None:intergenic
TGAAAGGAAGAGGGCCTCGA+AGG 0.597013 4_1:-5429245 Msa0531220:CDS
GGTCGTGGAGGACATGTTCG+AGG 0.600116 4_1:-5429369 Msa0531220:CDS
TTATTTACTTGAGTATGTGA+GGG 0.601489 4_1:+5428593 None:intergenic
TAATTCATCTGTAATGGGAT+CGG 0.602971 4_1:+5428626 None:intergenic
ACAAACCTGGTAAGAAGGTG+GGG 0.604756 4_1:+5428243 None:intergenic
TAGTTGCTTGTTTAATTGTG+CGG 0.607173 4_1:-5426446 Msa0531220:intron
ACAGACGTTAAAGTCTGCCC+TGG 0.607646 4_1:+5428527 None:intergenic
GAGATCCACTACCAGGTCGA+TGG 0.608351 4_1:+5428480 None:intergenic
GCCCGAGGGGTAAAATGGAG+GGG 0.608422 4_1:+5428943 None:intergenic
AGTAGGAATATCAAGAAGCA+CGG 0.609070 4_1:+5425946 None:intergenic
CATGTAAAAGGCACCAGCAG+TGG 0.613039 4_1:+5430203 None:intergenic
TGAAGCAGCTGATTGCATCA+TGG 0.614596 4_1:-5426089 Msa0531220:three_prime_UTR
ATTGAAAGGAAGGGATTGAG+CGG 0.614782 4_1:+5430930 None:intergenic
ATGTAAAAGGCACCAGCAGT+GGG 0.616487 4_1:+5430204 None:intergenic
GTTCGTTCTGATGATTCAGA+AGG 0.616861 4_1:-5430471 Msa0531220:CDS
AAAATAACTACATGGAACAA+AGG 0.618150 4_1:+5426036 None:intergenic
TTCTTTGTTAGAAGAGCCCG+AGG 0.620299 4_1:+5428928 None:intergenic
ACAATTCTAATGCCCGCCAA+AGG 0.620322 4_1:-5430161 Msa0531220:intron
AACGACAGAATAAACCTCGC+AGG 0.625383 4_1:-5426990 Msa0531220:CDS
GGTATGAACCTACCAACAGA+AGG 0.632725 4_1:-5429224 Msa0531220:CDS
GGTGCTTACAGTCGTCAACC+GGG 0.633350 4_1:-5427320 Msa0531220:CDS
GGAAGAAGAAGATTCTGGTG+AGG 0.633912 4_1:-5430268 Msa0531220:CDS
AGGTCGATGGCCCATCTGTG+GGG 0.635661 4_1:+5428493 None:intergenic
TCAGAATCAGGTAAAGCCAA+AGG 0.638352 4_1:-5428389 Msa0531220:CDS
GAAAACCCTCATCCATAACT+GGG 0.641507 4_1:+5428849 None:intergenic
TCTGATGATTCAGAAGGTGA+AGG 0.642032 4_1:-5430465 Msa0531220:CDS
GAGGATTAGCAACATATCCA+GGG 0.645143 4_1:+5427549 None:intergenic
AAGCCAAAGGTGCATTGGTG+GGG 0.647056 4_1:-5428376 Msa0531220:CDS
GAAAAGGAGATTGAGAAACA+TGG 0.648323 4_1:+5428678 None:intergenic
TTACAAACCTGGTAAGAAGG+TGG 0.648396 4_1:+5428241 None:intergenic
TAGGCTTTCCAACAGATGGG+CGG 0.654630 4_1:+5428741 None:intergenic
AGGTTGTTGTGAAAGGAAGA+GGG 0.655613 4_1:-5429254 Msa0531220:CDS
CATTAGAATTGTCCCTAAAG+CGG 0.656229 4_1:+5430172 None:intergenic
TGGGAAAATCAGAAATGACA+TGG 0.656948 4_1:-5427517 Msa0531220:intron
TGTAAGCACCGTCAACAGCA+AGG 0.657890 4_1:+5427333 None:intergenic
TGATTCTGGAGAAACAGATG+TGG 0.659001 4_1:-5428414 Msa0531220:CDS
GCAGGAACTCCCATACCACC+AGG 0.661642 4_1:+5427587 None:intergenic
GTGGTTAAGGAATCTGATGG+TGG 0.666005 4_1:-5430306 Msa0531220:CDS
TAAGGAATCTGATGGTGGTG+TGG 0.667047 4_1:-5430301 Msa0531220:CDS
TGATTATGATGAAGATGATG+AGG 0.669501 4_1:-5430433 Msa0531220:CDS
GGTCCCCTTCCAGGACCCTG+GGG 0.675246 4_1:+5428338 None:intergenic
ATTCGTGGCACTGGTCGTGG+AGG 0.678406 4_1:-5429381 Msa0531220:CDS
TTCAGAGAAGTTCTGCACCA+GGG 0.679725 4_1:-5428544 Msa0531220:CDS
TCCAAAGATGACAAGAAATG+GGG 0.681978 4_1:-5429590 Msa0531220:CDS
CTTTGTTAGAAGAGCCCGAG+GGG 0.684062 4_1:+5428930 None:intergenic
TGAGAAATATGCAATCATGA+CGG 0.686101 4_1:+5426935 None:intergenic
AGTTATTGCAGTTTGACGGG+TGG 0.690946 4_1:-5426469 Msa0531220:three_prime_UTR
TTTGGAGGCCAGCATCCTGG+TGG 0.702152 4_1:-5427602 Msa0531220:CDS
GATGATTCAGAAGGTGAAGG+TGG 0.703579 4_1:-5430462 Msa0531220:CDS
TCTTTGTTAGAAGAGCCCGA+GGG 0.712689 4_1:+5428929 None:intergenic
GAGTATGTGAGGGAACAGGT+TGG 0.720166 4_1:+5428603 None:intergenic
ATTGTGGTTAAGGAATCTGA+TGG 0.721815 4_1:-5430309 Msa0531220:CDS
AAAGATCGCTTCTTACAATG+CGG 0.731740 4_1:-5430587 Msa0531220:CDS
CAAAACAATACAATTCATCG+GGG 0.743574 4_1:-5428818 Msa0531220:CDS
ATTTAGAGGAGACCTTCTAG+GGG 0.744328 4_1:-5429426 Msa0531220:intron
TGGACACCAGAAGATCCAGG+CGG 0.814508 4_1:+5428698 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATACAAGAAATATATT+TGG + chr4_1:5426722-5426741 None:intergenic 10.0%
!!! TGATTTTTCTATTTTTAATT+TGG - chr4_1:5429188-5429207 Msa0531220:intron 10.0%
!!! TTTGAATTTTTATCGTTTTA+CGG - chr4_1:5426064-5426083 Msa0531220:three_prime_UTR 15.0%
!! AATAATAGAGAATATAATGA+AGG - chr4_1:5427531-5427550 Msa0531220:CDS 15.0%
!! ATTGTATACCTATATTATTA+GGG - chr4_1:5428851-5428870 Msa0531220:CDS 15.0%
!! ATTATTAATAGCATTTATGT+TGG - chr4_1:5428906-5428925 Msa0531220:CDS 15.0%
!! ATTTATATTAATATCGTCTT+GGG - chr4_1:5429138-5429157 Msa0531220:intron 15.0%
!!! TTTTCTATTTTTAATTTGGT+TGG - chr4_1:5429192-5429211 Msa0531220:CDS 15.0%
!! AAGAATAATTATGAAAATAG+AGG - chr4_1:5430409-5430428 Msa0531220:CDS 15.0%
!! TGGAAAAAAAAAATGTTAAA+TGG + chr4_1:5430441-5430460 None:intergenic 15.0%
!! TTACATGAGAAAAATTTAAA+TGG - chr4_1:5430945-5430964 Msa0531220:five_prime_UTR 15.0%
!!! TGTTTTGTATGTATGTATTA+CGG - chr4_1:5426800-5426819 Msa0531220:intron 20.0%
!! AACAAAACAATACAATTCAT+CGG - chr4_1:5428011-5428030 Msa0531220:intron 20.0%
!! TAACTAAATTGCAAAAGTTA+AGG - chr4_1:5428610-5428629 Msa0531220:CDS 20.0%
!! GATTGTATACCTATATTATT+AGG - chr4_1:5428850-5428869 Msa0531220:CDS 20.0%
!! GTAAATAACCCTAATAATAT+AGG + chr4_1:5428862-5428881 None:intergenic 20.0%
!! GATTTATATTAATATCGTCT+TGG - chr4_1:5429137-5429156 Msa0531220:intron 20.0%
!!! TTTGAAGTGATGAAAATTTA+AGG + chr4_1:5429394-5429413 None:intergenic 20.0%
!! CATATTTAATACTATAAGAC+TGG + chr4_1:5429570-5429589 None:intergenic 20.0%
!!! TATATTTTACCAGTTTTTTG+CGG + chr4_1:5429723-5429742 None:intergenic 20.0%
!! CAAATCATTTCAATTAATGT+TGG - chr4_1:5429917-5429936 Msa0531220:intron 20.0%
!!! TATTTGAAATAAGCAGATAA+AGG - chr4_1:5430006-5430025 Msa0531220:intron 20.0%
!! AATAAATTTCAAGACTTTCT+AGG - chr4_1:5430166-5430185 Msa0531220:CDS 20.0%
!!! ATTGCAACATTTTTGTAAAA+AGG + chr4_1:5430238-5430257 None:intergenic 20.0%
!! TTTATTGAATTTCAACCAAT+AGG + chr4_1:5430473-5430492 None:intergenic 20.0%
!! TGAAATAACACAATTTATTG+TGG - chr4_1:5430611-5430630 Msa0531220:CDS 20.0%
!!! ACAAAATTTTCTCATGTAAA+TGG - chr4_1:5430769-5430788 Msa0531220:five_prime_UTR 20.0%
!! TTCAGATAAAAATAACTACA+TGG + chr4_1:5430806-5430825 None:intergenic 20.0%
!!! AAAATTTTCACCTTTATTGT+TGG - chr4_1:5430839-5430858 Msa0531220:five_prime_UTR 20.0%
!!! AAATTTTCACCTTTATTGTT+GGG - chr4_1:5430840-5430859 Msa0531220:five_prime_UTR 20.0%
!!! GTAATTATCTGATTTTGGAA+GGG + chr4_1:5425775-5425794 None:intergenic 25.0%
!! AGAAGGTAATTATCTGATTT+TGG + chr4_1:5425780-5425799 None:intergenic 25.0%
!! TGTTTGAAGTTAAAATAGAG+AGG + chr4_1:5425810-5425829 None:intergenic 25.0%
! ATTGAAGAAATTGAAAGGAA+GGG + chr4_1:5425913-5425932 None:intergenic 25.0%
! AATTGAAGAAATTGAAAGGA+AGG + chr4_1:5425914-5425933 None:intergenic 25.0%
! TCCTTTCAATTTCTTCAATT+AGG - chr4_1:5425914-5425933 Msa0531220:three_prime_UTR 25.0%
! CCTTTCAATTTCTTCAATTA+GGG - chr4_1:5425915-5425934 Msa0531220:three_prime_UTR 25.0%
! AATGAGATAGATTGTGAAAA+TGG + chr4_1:5425943-5425962 None:intergenic 25.0%
! TTCAAGAAACTTTGCATAAA+AGG - chr4_1:5425996-5426015 Msa0531220:three_prime_UTR 25.0%
! TCAAGAAACTTTGCATAAAA+GGG - chr4_1:5425997-5426016 Msa0531220:three_prime_UTR 25.0%
!!! ATTCGTGGATTAATTTTTTG+TGG - chr4_1:5426101-5426120 Msa0531220:three_prime_UTR 25.0%
!!! TTCGTGGATTAATTTTTTGT+GGG - chr4_1:5426102-5426121 Msa0531220:three_prime_UTR 25.0%
!!! TTTTTGGTTCTTGAATTTCT+AGG - chr4_1:5426143-5426162 Msa0531220:three_prime_UTR 25.0%
!!! TTGAATTTCTAGGTTTTTTC+TGG - chr4_1:5426153-5426172 Msa0531220:three_prime_UTR 25.0%
!!! TGAATTTCTAGGTTTTTTCT+GGG - chr4_1:5426154-5426173 Msa0531220:three_prime_UTR 25.0%
!! TATTTAGTGTTAGTTTGACT+TGG - chr4_1:5426737-5426756 Msa0531220:intron 25.0%
!!! TTGTAGCTTAGTTTTAGATT+TGG - chr4_1:5426764-5426783 Msa0531220:intron 25.0%
! ACACTAAACATACATATACA+AGG + chr4_1:5426955-5426974 None:intergenic 25.0%
! AAACTAAACTACAATATTCC+AGG + chr4_1:5426986-5427005 None:intergenic 25.0%
!!! TTTTTTGTTCTCTTAGATCT+AGG - chr4_1:5427741-5427760 Msa0531220:intron 25.0%
! AAATTAATCTGCCACAAAAA+CGG - chr4_1:5427924-5427943 Msa0531220:intron 25.0%
!!! ATTGTATTGTTTTGTTGAAC+CGG + chr4_1:5428007-5428026 None:intergenic 25.0%
! ACAAAACAATACAATTCATC+GGG - chr4_1:5428012-5428031 Msa0531220:intron 25.0%
! TTATTTACTTGAGTATGTGA+GGG + chr4_1:5428241-5428260 None:intergenic 25.0%
! TTTATTTACTTGAGTATGTG+AGG + chr4_1:5428242-5428261 None:intergenic 25.0%
!! TTAATTGATGCAGATCTTTT+TGG + chr4_1:5428391-5428410 None:intergenic 25.0%
! TCAATTAATTCACTTGATTC+TGG - chr4_1:5428403-5428422 Msa0531220:CDS 25.0%
!! TGCAAAAGTTAAGGAAATTT+TGG - chr4_1:5428619-5428638 Msa0531220:CDS 25.0%
!! TAATATTACATGATTTTCGC+AGG + chr4_1:5428734-5428753 None:intergenic 25.0%
! AAGTGAGAATGTTAGTATTA+GGG - chr4_1:5428804-5428823 Msa0531220:CDS 25.0%
! TATAATCTTCCATAATGCAT+TGG + chr4_1:5428946-5428965 None:intergenic 25.0%
!! CTTTGAAAGAAAGAAAATTC+AGG + chr4_1:5429039-5429058 None:intergenic 25.0%
!! TTTTCTTTCTTTCAAAGTAC+AGG - chr4_1:5429042-5429061 Msa0531220:CDS 25.0%
! TAATATAAATCAGAACCGTA+GGG + chr4_1:5429128-5429147 None:intergenic 25.0%
! TTAATATAAATCAGAACCGT+AGG + chr4_1:5429129-5429148 None:intergenic 25.0%
!! TTGTTGCATTTTCTGATATT+TGG - chr4_1:5430071-5430090 Msa0531220:intron 25.0%
!!! ATTTGGTAATTTTGTTATGC+AGG - chr4_1:5430088-5430107 Msa0531220:intron 25.0%
!! AATAAAGTCTTTATTTCGAG+TGG - chr4_1:5430487-5430506 Msa0531220:CDS 25.0%
!! ATAAAGTCTTTATTTCGAGT+GGG - chr4_1:5430488-5430507 Msa0531220:CDS 25.0%
! TTCAAAAGATCAATCCATTA+GGG + chr4_1:5430595-5430614 None:intergenic 25.0%
! TTTCAAAAGATCAATCCATT+AGG + chr4_1:5430596-5430615 None:intergenic 25.0%
!! AATTTATTGTGGTTCTTTTC+AGG - chr4_1:5430622-5430641 Msa0531220:CDS 25.0%
! AAAATAACTACATGGAACAA+AGG + chr4_1:5430798-5430817 None:intergenic 25.0%
! AAAACAATACCCAACAATAA+AGG + chr4_1:5430852-5430871 None:intergenic 25.0%
! TTGATATTCCTACTAATAGT+TGG - chr4_1:5430894-5430913 Msa0531220:five_prime_UTR 25.0%
! CTTCTTGAATTCAGTTAATT+TGG - chr4_1:5430976-5430995 Msa0531220:five_prime_UTR 25.0%
!! ATTCAGTTAATTTGGATGAA+TGG - chr4_1:5430984-5431003 Msa0531220:five_prime_UTR 25.0%
!! TGATTTTGGAAGGGTAATTT+CGG + chr4_1:5425766-5425785 None:intergenic 30.0%
! GGTAATTATCTGATTTTGGA+AGG + chr4_1:5425776-5425795 None:intergenic 30.0%
CCCTAATTGAAGAAATTGAA+AGG + chr4_1:5425918-5425937 None:intergenic 30.0%
TTTCTTGAATCGATTGAAGT+TGG + chr4_1:5425985-5426004 None:intergenic 30.0%
CAAGAAACTTTGCATAAAAG+GGG - chr4_1:5425998-5426017 Msa0531220:three_prime_UTR 30.0%
! TTTTTATCGTTTTACGGTTC+TGG - chr4_1:5426070-5426089 Msa0531220:three_prime_UTR 30.0%
! TTTTATCGTTTTACGGTTCT+GGG - chr4_1:5426071-5426090 Msa0531220:three_prime_UTR 30.0%
!!! TCGTGGATTAATTTTTTGTG+GGG - chr4_1:5426103-5426122 Msa0531220:three_prime_UTR 30.0%
!!! TCTTGTTTTTTGGGGTTTTT+TGG - chr4_1:5426127-5426146 Msa0531220:three_prime_UTR 30.0%
!!! GAATTTCTAGGTTTTTTCTG+GGG - chr4_1:5426155-5426174 Msa0531220:three_prime_UTR 30.0%
!!! TTTTTCTGGGGTTTTTGATA+TGG - chr4_1:5426167-5426186 Msa0531220:three_prime_UTR 30.0%
TGATTATGATGAAGATGATG+AGG - chr4_1:5426398-5426417 Msa0531220:intron 30.0%
AGTTGAAGAAGAAGTTTATG+AGG - chr4_1:5426467-5426486 Msa0531220:three_prime_UTR 30.0%
CATGATGAAAAAGATACCTT+TGG + chr4_1:5426689-5426708 None:intergenic 30.0%
CATTGACACTAATAATTGGA+TGG + chr4_1:5427111-5427130 None:intergenic 30.0%
!! TTTTAACTCCGACTTTTCAA+AGG - chr4_1:5427188-5427207 Msa0531220:intron 30.0%
GTTGTGTGTATGAAATTTAG+AGG - chr4_1:5427391-5427410 Msa0531220:CDS 30.0%
!!! TTACTGTTTATTTTGCACCT+GGG + chr4_1:5427646-5427665 None:intergenic 30.0%
AATTAATCTGCCACAAAAAC+GGG - chr4_1:5427925-5427944 Msa0531220:intron 30.0%
CAAAACAATACAATTCATCG+GGG - chr4_1:5428013-5428032 Msa0531220:intron 30.0%
! TAATTCATCTGTAATGGGAT+CGG + chr4_1:5428208-5428227 None:intergenic 30.0%
!! GTTGGTAATTCATCTGTAAT+GGG + chr4_1:5428213-5428232 None:intergenic 30.0%
TTGCAATTTAGTTACAAACC+TGG + chr4_1:5428604-5428623 None:intergenic 30.0%
GAAGTGAGAATGTTAGTATT+AGG - chr4_1:5428803-5428822 Msa0531220:CDS 30.0%
AGGTATACAATCTTAGAGTT+TGG + chr4_1:5428842-5428861 None:intergenic 30.0%
!!! ATTTTAACTTAACGAAGACG+TGG - chr4_1:5428965-5428984 Msa0531220:CDS 30.0%
! AAGACGTGGATAATAGTTTT+TGG - chr4_1:5428979-5428998 Msa0531220:CDS 30.0%
! AGACGTGGATAATAGTTTTT+GGG - chr4_1:5428980-5428999 Msa0531220:CDS 30.0%
!!! TGGATAATAGTTTTTGGGTT+TGG - chr4_1:5428985-5429004 Msa0531220:CDS 30.0%
TTGGGTTTGGATAATATACT+TGG - chr4_1:5428998-5429017 Msa0531220:CDS 30.0%
TGGGTTTGGATAATATACTT+GGG - chr4_1:5428999-5429018 Msa0531220:CDS 30.0%
AAAATCAATTGCAAGCGTAA+AGG + chr4_1:5429175-5429194 None:intergenic 30.0%
TAATTACCTCGTCTGTATAT+AGG - chr4_1:5429419-5429438 Msa0531220:CDS 30.0%
CAAAAGGTGAAACTATCAAA+GGG + chr4_1:5429753-5429772 None:intergenic 30.0%
TCAAAAGGTGAAACTATCAA+AGG + chr4_1:5429754-5429773 None:intergenic 30.0%
!!! ATAGTTTCACCTTTTGACTT+TGG - chr4_1:5429757-5429776 Msa0531220:intron 30.0%
TGAGAAATATGCAATCATGA+CGG + chr4_1:5429899-5429918 None:intergenic 30.0%
ATGCTATCTATGCAGATATT+CGG - chr4_1:5429942-5429961 Msa0531220:intron 30.0%
! AGATATTCGGAGATGAATTT+TGG - chr4_1:5429955-5429974 Msa0531220:intron 30.0%
CATAGAACTAGTTGTTAGTT+TGG + chr4_1:5430042-5430061 None:intergenic 30.0%
! AATGTTGCAATGATTTTGCT+TGG - chr4_1:5430247-5430266 Msa0531220:CDS 30.0%
TAGTTGCTTGTTTAATTGTG+CGG - chr4_1:5430385-5430404 Msa0531220:CDS 30.0%
TTGAATTTCAACCAATAGGA+GGG + chr4_1:5430469-5430488 None:intergenic 30.0%
ATTGAATTTCAACCAATAGG+AGG + chr4_1:5430470-5430489 None:intergenic 30.0%
! TTTACCGGTTGAAATTCATA+TGG + chr4_1:5430516-5430535 None:intergenic 30.0%
! ATATCTGTTACTTACCCTAA+TGG - chr4_1:5430578-5430597 Msa0531220:CDS 30.0%
CAAATCAACCAACTATTAGT+AGG + chr4_1:5430905-5430924 None:intergenic 30.0%
AATAGAGAGGATTACGTAGA+AGG + chr4_1:5425797-5425816 None:intergenic 35.0%
TAGTCACGAATTGTGAAAAG+AGG + chr4_1:5425839-5425858 None:intergenic 35.0%
ACTCCTAAATCTCCAATCTA+GGG - chr4_1:5425862-5425881 Msa0531220:three_prime_UTR 35.0%
AAACCCTAGATTGGAGATTT+AGG + chr4_1:5425868-5425887 None:intergenic 35.0%
!!! TTTGTGGGGTTCTTGTTTTT+TGG - chr4_1:5426117-5426136 Msa0531220:three_prime_UTR 35.0%
!!! TTGTGGGGTTCTTGTTTTTT+GGG - chr4_1:5426118-5426137 Msa0531220:three_prime_UTR 35.0%
TGATATGGCTAATTCTGTTG+CGG - chr4_1:5426182-5426201 Msa0531220:three_prime_UTR 35.0%
AAAGATCGCTTCTTACAATG+CGG - chr4_1:5426244-5426263 Msa0531220:intron 35.0%
! TAGTGATGATGAAGAAGAAG+AGG - chr4_1:5426278-5426297 Msa0531220:intron 35.0%
ATGAAGAAGAAGAGGAAAGA+GGG - chr4_1:5426286-5426305 Msa0531220:intron 35.0%
TGAAGATGATGAGGAAATTG+AGG - chr4_1:5426407-5426426 Msa0531220:intron 35.0%
TGAGGAAGAAGAAGAATATG+AGG - chr4_1:5426425-5426444 Msa0531220:intron 35.0%
! ATATGAGGAAGAAGAGTATG+AGG - chr4_1:5426440-5426459 Msa0531220:intron 35.0%
GAAGAAGTTTATGAGGAGAA+AGG - chr4_1:5426474-5426493 Msa0531220:three_prime_UTR 35.0%
ATTGTGGTTAAGGAATCTGA+TGG - chr4_1:5426522-5426541 Msa0531220:intron 35.0%
GAATCTTCTTCTTCCAAAGA+GGG + chr4_1:5426558-5426577 None:intergenic 35.0%
AGAATCTTCTTCTTCCAAAG+AGG + chr4_1:5426559-5426578 None:intergenic 35.0%
! TCTTTGGAAGAAGAAGATTC+TGG - chr4_1:5426558-5426577 Msa0531220:intron 35.0%
AGATTCTGGTGAGGTTAATT+TGG - chr4_1:5426572-5426591 Msa0531220:intron 35.0%
! GGTTAATTTGGAGGAGAAAA+AGG - chr4_1:5426584-5426603 Msa0531220:intron 35.0%
CATTAGAATTGTCCCTAAAG+CGG + chr4_1:5426662-5426681 None:intergenic 35.0%
ATGAAAAAGATACCTTTGGC+GGG + chr4_1:5426685-5426704 None:intergenic 35.0%
GATGAAAAAGATACCTTTGG+CGG + chr4_1:5426686-5426705 None:intergenic 35.0%
TTACGGATACTTTAGATCGA+AGG - chr4_1:5426817-5426836 Msa0531220:intron 35.0%
CATGTTGCTATGTACCAAAT+AGG - chr4_1:5426926-5426945 Msa0531220:CDS 35.0%
CATATACAAGGCAACCTATT+TGG + chr4_1:5426943-5426962 None:intergenic 35.0%
!! TGTTTAGTGTTACTTTGACC+TGG - chr4_1:5426965-5426984 Msa0531220:CDS 35.0%
!!! TGTCATAGAGTGTGTTGTTT+TGG - chr4_1:5427011-5427030 Msa0531220:CDS 35.0%
! CACGCATTGACACTAATAAT+TGG + chr4_1:5427115-5427134 None:intergenic 35.0%
AGTCCAAAGATGACAAGAAA+TGG - chr4_1:5427239-5427258 Msa0531220:intron 35.0%
GTCCAAAGATGACAAGAAAT+GGG - chr4_1:5427240-5427259 Msa0531220:intron 35.0%
TCCAAAGATGACAAGAAATG+GGG - chr4_1:5427241-5427260 Msa0531220:intron 35.0%
ATGGGGACATGATAAATTTG+AGG - chr4_1:5427258-5427277 Msa0531220:intron 35.0%
AGGAAATTTCAGTGCAAGAT+AGG - chr4_1:5427278-5427297 Msa0531220:intron 35.0%
AAATTTAGAGGAGACCTTCT+AGG - chr4_1:5427403-5427422 Msa0531220:intron 35.0%
AATTTAGAGGAGACCTTCTA+GGG - chr4_1:5427404-5427423 Msa0531220:intron 35.0%
TGAAGGTAGCAATCAAAATC+AGG - chr4_1:5427548-5427567 Msa0531220:CDS 35.0%
!!! TACTGTTTATTTTGCACCTG+GGG + chr4_1:5427645-5427664 None:intergenic 35.0%
!!! CTTACTGTTTATTTTGCACC+TGG + chr4_1:5427647-5427666 None:intergenic 35.0%
ACATGATCACTATCATGTTG+AGG - chr4_1:5427698-5427717 Msa0531220:intron 35.0%
TCTTAGATCTAGGAAATCTC+AGG - chr4_1:5427751-5427770 Msa0531220:intron 35.0%
! ACATGTGAAGTTTTCTTAGC+AGG + chr4_1:5427845-5427864 None:intergenic 35.0%
GCCTATGAACAATGTTCATT+TGG - chr4_1:5428108-5428127 Msa0531220:intron 35.0%
GCCAAATGAACATTGTTCAT+AGG + chr4_1:5428112-5428131 None:intergenic 35.0%
GAAAAGGAGATTGAGAAACA+TGG + chr4_1:5428156-5428175 None:intergenic 35.0%
!! GGTTGGTAATTCATCTGTAA+TGG + chr4_1:5428214-5428233 None:intergenic 35.0%
! ATTGATGCAGATCTTTTTGG+TGG + chr4_1:5428388-5428407 None:intergenic 35.0%
TAGTTACAAACCTGGTAAGA+AGG + chr4_1:5428596-5428615 None:intergenic 35.0%
! AATTTTGGATCCTGTCTACT+TGG - chr4_1:5428634-5428653 Msa0531220:CDS 35.0%
TCTGTCAAACCAATGCATTA+TGG - chr4_1:5428934-5428953 Msa0531220:CDS 35.0%
GGGTTTGGATAATATACTTG+GGG - chr4_1:5429000-5429019 Msa0531220:CDS 35.0%
TGGATAATATACTTGGGGTT+AGG - chr4_1:5429005-5429024 Msa0531220:CDS 35.0%
TCTTTCTTTCAAAGTACAGG+AGG - chr4_1:5429045-5429064 Msa0531220:CDS 35.0%
TATTGTCATCTTTAGCCCTA+CGG - chr4_1:5429110-5429129 Msa0531220:intron 35.0%
TGGGAAAATCAGAAATGACA+TGG - chr4_1:5429314-5429333 Msa0531220:CDS 35.0%
CCTTGAATTATCAATTGCTG+AGG + chr4_1:5429542-5429561 None:intergenic 35.0%
! CCTCAGCAATTGATAATTCA+AGG - chr4_1:5429539-5429558 Msa0531220:intron 35.0%
CTGCAATATCGCAAATGAAA+TGG + chr4_1:5429603-5429622 None:intergenic 35.0%
! ATTTTACCAGTTTTTTGCGG+TGG + chr4_1:5429720-5429739 None:intergenic 35.0%
CTGATGTAACCAAAGTCAAA+AGG + chr4_1:5429769-5429788 None:intergenic 35.0%
!! CTTTTATTTGTCTGTAGAGC+TGG - chr4_1:5429800-5429819 Msa0531220:intron 35.0%
!! TGGTCAGTGAGGTTTTATAT+AGG - chr4_1:5429975-5429994 Msa0531220:intron 35.0%
ATCAAAAGCTGGAGAACAAA+GGG + chr4_1:5430127-5430146 None:intergenic 35.0%
ATTATGGAAGGGAAAGAAAG+GGG + chr4_1:5430292-5430311 None:intergenic 35.0%
CATTATGGAAGGGAAAGAAA+GGG + chr4_1:5430293-5430312 None:intergenic 35.0%
ACATTATGGAAGGGAAAGAA+AGG + chr4_1:5430294-5430313 None:intergenic 35.0%
! CAGGTGTTATATAACTGCAA+GGG + chr4_1:5430319-5430338 None:intergenic 35.0%
CTGAAGTTATTGCAGTTTGA+CGG - chr4_1:5430358-5430377 Msa0531220:CDS 35.0%
TGAAGTTATTGCAGTTTGAC+GGG - chr4_1:5430359-5430378 Msa0531220:CDS 35.0%
GGATCCATATGAATTTCAAC+CGG - chr4_1:5430509-5430528 Msa0531220:CDS 35.0%
!!! CCATGTAACACTTGTTTTAC+CGG + chr4_1:5430531-5430550 None:intergenic 35.0%
! TCAGGTTTTTCTTGCTTGTT+TGG - chr4_1:5430640-5430659 Msa0531220:CDS 35.0%
AGTAGGAATATCAAGAAGCA+CGG + chr4_1:5430888-5430907 None:intergenic 35.0%
TGTCTTCAAAGACTGTTGTT+TGG - chr4_1:5431035-5431054 Msa0531220:five_prime_UTR 35.0%
CACTCCTAAATCTCCAATCT+AGG - chr4_1:5425861-5425880 Msa0531220:three_prime_UTR 40.0%
ATTGAAAGGAAGGGATTGAG+CGG + chr4_1:5425904-5425923 None:intergenic 40.0%
!!! TGTGGGGTTCTTGTTTTTTG+GGG - chr4_1:5426119-5426138 Msa0531220:three_prime_UTR 40.0%
GATGAAGAAGAAGAGGAAAG+AGG - chr4_1:5426285-5426304 Msa0531220:intron 40.0%
TGAAGAAGAAGAGGAAAGAG+GGG - chr4_1:5426287-5426306 Msa0531220:intron 40.0%
AGAGTGAAGATCTTCGTGTT+AGG - chr4_1:5426337-5426356 Msa0531220:intron 40.0%
GAGTGAAGATCTTCGTGTTA+GGG - chr4_1:5426338-5426357 Msa0531220:intron 40.0%
GTTCGTTCTGATGATTCAGA+AGG - chr4_1:5426360-5426379 Msa0531220:intron 40.0%
TCTGATGATTCAGAAGGTGA+AGG - chr4_1:5426366-5426385 Msa0531220:intron 40.0%
GTTTATGAGGAGAAAGGTGA+AGG - chr4_1:5426480-5426499 Msa0531220:three_prime_UTR 40.0%
! TGGTTCTGTGATTGTGGTTA+AGG - chr4_1:5426512-5426531 Msa0531220:intron 40.0%
! TTCTGGTGAGGTTAATTTGG+AGG - chr4_1:5426575-5426594 Msa0531220:intron 40.0%
! TAACTCCGACTTTTCAAAGG+CGG - chr4_1:5427191-5427210 Msa0531220:intron 40.0%
TCCCCATTTCTTGTCATCTT+TGG + chr4_1:5427245-5427264 None:intergenic 40.0%
ATTTAGAGGAGACCTTCTAG+GGG - chr4_1:5427405-5427424 Msa0531220:intron 40.0%
!! CTTCTAGGGGTAATTTTCGA+GGG - chr4_1:5427418-5427437 Msa0531220:intron 40.0%
CAATCAAAATCAGGTGCCTA+AGG - chr4_1:5427557-5427576 Msa0531220:CDS 40.0%
CTTCCTTTCACAACAACCTT+AGG + chr4_1:5427576-5427595 None:intergenic 40.0%
AAGGTTGTTGTGAAAGGAAG+AGG - chr4_1:5427576-5427595 Msa0531220:CDS 40.0%
AGGTTGTTGTGAAAGGAAGA+GGG - chr4_1:5427577-5427596 Msa0531220:CDS 40.0%
! TTCTGCATTGGATGATGGTA+TGG + chr4_1:5427810-5427829 None:intergenic 40.0%
TCAGATTCTGCATTGGATGA+TGG + chr4_1:5427815-5427834 None:intergenic 40.0%
! AAGTTTTCTTAGCAGGCACA+GGG + chr4_1:5427838-5427857 None:intergenic 40.0%
!! ATTTGGACATCCCGTTTTTG+TGG + chr4_1:5427938-5427957 None:intergenic 40.0%
CAAAAACGGGATGTCCAAAT+TGG - chr4_1:5427938-5427957 Msa0531220:intron 40.0%
CAGGAATATTCACCCAGTTA+TGG - chr4_1:5427970-5427989 Msa0531220:intron 40.0%
TATTCACCCAGTTATGGATG+AGG - chr4_1:5427976-5427995 Msa0531220:intron 40.0%
ATTCACCCAGTTATGGATGA+GGG - chr4_1:5427977-5427996 Msa0531220:intron 40.0%
GAAAACCCTCATCCATAACT+GGG + chr4_1:5427985-5428004 None:intergenic 40.0%
! AGTTATGGATGAGGGTTTTC+CGG - chr4_1:5427985-5428004 Msa0531220:intron 40.0%
!! TGTTGTTGATTCCATCAGCA+TGG - chr4_1:5428042-5428061 Msa0531220:intron 40.0%
TCATAGGCTTTCCAACAGAT+GGG + chr4_1:5428096-5428115 None:intergenic 40.0%
TTCATAGGCTTTCCAACAGA+TGG + chr4_1:5428097-5428116 None:intergenic 40.0%
! TTTCTCAATCTCCTTTTCCC+AGG - chr4_1:5428158-5428177 Msa0531220:intron 40.0%
! TGATTCTGGAGAAACAGATG+TGG - chr4_1:5428417-5428436 Msa0531220:CDS 40.0%
!! TTTGGCTTTACCTGATTCTG+AGG + chr4_1:5428443-5428462 None:intergenic 40.0%
TCAGAATCAGGTAAAGCCAA+AGG - chr4_1:5428442-5428461 Msa0531220:CDS 40.0%
TACAAACCTGGTAAGAAGGT+GGG + chr4_1:5428592-5428611 None:intergenic 40.0%
TTACAAACCTGGTAAGAAGG+TGG + chr4_1:5428593-5428612 None:intergenic 40.0%
ATATACTTGGGGTTAGGTCT+TGG - chr4_1:5429011-5429030 Msa0531220:CDS 40.0%
TATACTTGGGGTTAGGTCTT+GGG - chr4_1:5429012-5429031 Msa0531220:CDS 40.0%
! TACAGGAGGTATGTGAGATT+GGG - chr4_1:5429059-5429078 Msa0531220:CDS 40.0%
TTGGATGCAGTCATGCAATT+TGG - chr4_1:5429211-5429230 Msa0531220:CDS 40.0%
! GAGGATTAGCAACATATCCA+GGG + chr4_1:5429285-5429304 None:intergenic 40.0%
! TGAGGATTAGCAACATATCC+AGG + chr4_1:5429286-5429305 None:intergenic 40.0%
TATGTTGCTAATCCTCAGCT+TGG - chr4_1:5429289-5429308 Msa0531220:CDS 40.0%
TGTATATAGGCTACCAGTCT+TGG - chr4_1:5429432-5429451 Msa0531220:intron 40.0%
! TCACATTTTCCTTGCTGCAA+AGG + chr4_1:5429674-5429693 None:intergenic 40.0%
GAGCTGGTAAATGATGAGTA+TGG - chr4_1:5429816-5429835 Msa0531220:intron 40.0%
!! GAGATGAATTTTGGTCAGTG+AGG - chr4_1:5429964-5429983 Msa0531220:intron 40.0%
GATCAAAAGCTGGAGAACAA+AGG + chr4_1:5430128-5430147 None:intergenic 40.0%
! TTGTTCTCCAGCTTTTGATC+TGG - chr4_1:5430128-5430147 Msa0531220:intron 40.0%
!! CTTTTGATCTGGAGCACTTT+GGG - chr4_1:5430139-5430158 Msa0531220:intron 40.0%
TTATGGAAGGGAAAGAAAGG+GGG + chr4_1:5430291-5430310 None:intergenic 40.0%
TAACTGCAAGGGCAACATTA+TGG + chr4_1:5430308-5430327 None:intergenic 40.0%
! GCAGGTGTTATATAACTGCA+AGG + chr4_1:5430320-5430339 None:intergenic 40.0%
CTGCAATAACTTCAGGAATG+TGG + chr4_1:5430353-5430372 None:intergenic 40.0%
CGTCAAACTGCAATAACTTC+AGG + chr4_1:5430360-5430379 None:intergenic 40.0%
CCGGTAAAACAAGTGTTACA+TGG - chr4_1:5430528-5430547 Msa0531220:CDS 40.0%
AAGCTTGTGAGAAACTAGTC+AGG - chr4_1:5430673-5430692 Msa0531220:five_prime_UTR 40.0%
! CTTCAAAGACTGTTGTTTGG+CGG - chr4_1:5431038-5431057 Msa0531220:five_prime_UTR 40.0%
CGGCAAACTTCATATGTTCA+CGG - chr4_1:5431058-5431077 Msa0531220:five_prime_UTR 40.0%
! TGGGATCTGAAACCCTAGAT+TGG + chr4_1:5425877-5425896 None:intergenic 45.0%
TTGAAAGGAAGGGATTGAGC+GGG + chr4_1:5425903-5425922 None:intergenic 45.0%
!!! CGTTTTACGGTTCTGGGTTT+TGG - chr4_1:5426077-5426096 Msa0531220:three_prime_UTR 45.0%
!!! GTTCTGGGTTTTGGAATTCG+TGG - chr4_1:5426086-5426105 Msa0531220:three_prime_UTR 45.0%
GATGATTCAGAAGGTGAAGG+TGG - chr4_1:5426369-5426388 Msa0531220:intron 45.0%
! TGAGGAAGAAGAGTATGAGG+AGG - chr4_1:5426443-5426462 Msa0531220:intron 45.0%
! GAGGAAGAAGAGTATGAGGA+GGG - chr4_1:5426444-5426463 Msa0531220:intron 45.0%
TATGAGGAGAAAGGTGAAGG+TGG - chr4_1:5426483-5426502 Msa0531220:three_prime_UTR 45.0%
ATGAGGAGAAAGGTGAAGGT+GGG - chr4_1:5426484-5426503 Msa0531220:three_prime_UTR 45.0%
!! GGTTGATGGTTCTGTGATTG+TGG - chr4_1:5426506-5426525 Msa0531220:three_prime_UTR 45.0%
GTGGTTAAGGAATCTGATGG+TGG - chr4_1:5426525-5426544 Msa0531220:intron 45.0%
!! TAAGGAATCTGATGGTGGTG+TGG - chr4_1:5426530-5426549 Msa0531220:intron 45.0%
GGAAGAAGAAGATTCTGGTG+AGG - chr4_1:5426563-5426582 Msa0531220:intron 45.0%
!! ATGTAAAAGGCACCAGCAGT+GGG + chr4_1:5426630-5426649 None:intergenic 45.0%
GCGGTCATCATGCATGTAAA+AGG + chr4_1:5426643-5426662 None:intergenic 45.0%
ACATGCATGATGACCGCTTT+AGG - chr4_1:5426646-5426665 Msa0531220:intron 45.0%
CATGCATGATGACCGCTTTA+GGG - chr4_1:5426647-5426666 Msa0531220:intron 45.0%
ACAATTCTAATGCCCGCCAA+AGG - chr4_1:5426670-5426689 Msa0531220:three_prime_UTR 45.0%
TTAGTGTCAAAGCGTGAGTC+AGG - chr4_1:5426879-5426898 Msa0531220:CDS 45.0%
TAGTGTCAAAGCGTGAGTCA+GGG - chr4_1:5426880-5426899 Msa0531220:CDS 45.0%
GTGCGTACACTTTAGATCGA+AGG - chr4_1:5427039-5427058 Msa0531220:intron 45.0%
! TGCATCCGCCTTTGAAAAGT+CGG + chr4_1:5427199-5427218 None:intergenic 45.0%
! ACTTTTCAAAGGCGGATGCA+TGG - chr4_1:5427199-5427218 Msa0531220:intron 45.0%
CCTCGAAAATTACCCCTAGA+AGG + chr4_1:5427420-5427439 None:intergenic 45.0%
!! CCTTCTAGGGGTAATTTTCG+AGG - chr4_1:5427417-5427436 Msa0531220:intron 45.0%
GTGCCTAAGGTTGTTGTGAA+AGG - chr4_1:5427570-5427589 Msa0531220:CDS 45.0%
TTGGTAGGTTCATACCTTCG+AGG + chr4_1:5427603-5427622 None:intergenic 45.0%
GGTATGAACCTACCAACAGA+AGG - chr4_1:5427607-5427626 Msa0531220:CDS 45.0%
GAACCTACCAACAGAAGGAA+TGG - chr4_1:5427612-5427631 Msa0531220:CDS 45.0%
! GAAGTTTTCTTAGCAGGCAC+AGG + chr4_1:5427839-5427858 None:intergenic 45.0%
TCTTTGTTAGAAGAGCCCGA+GGG + chr4_1:5427905-5427924 None:intergenic 45.0%
TTCTTTGTTAGAAGAGCCCG+AGG + chr4_1:5427906-5427925 None:intergenic 45.0%
AACTGGGTGAATATTCCTGC+TGG + chr4_1:5427969-5427988 None:intergenic 45.0%
GGAAAACCCTCATCCATAAC+TGG + chr4_1:5427986-5428005 None:intergenic 45.0%
ATACAGCTTGTCCATGCTGA+TGG + chr4_1:5428056-5428075 None:intergenic 45.0%
ACTTGAGTATGTGAGGGAAC+AGG + chr4_1:5428235-5428254 None:intergenic 45.0%
AGTTTCTCCAACACAACTGC+AGG - chr4_1:5428261-5428280 Msa0531220:CDS 45.0%
TGAATAGCCTGCAGTTGTGT+TGG + chr4_1:5428271-5428290 None:intergenic 45.0%
ATTCAGAGAAGTTCTGCACC+AGG - chr4_1:5428286-5428305 Msa0531220:CDS 45.0%
TTCAGAGAAGTTCTGCACCA+GGG - chr4_1:5428287-5428306 Msa0531220:CDS 45.0%
GAAGATTGAGATCCACTACC+AGG + chr4_1:5428361-5428380 None:intergenic 45.0%
! AGGTAAAGCCAAAGGTGCAT+TGG - chr4_1:5428450-5428469 Msa0531220:CDS 45.0%
! TAAAGCCAAAGGTGCATTGG+TGG - chr4_1:5428453-5428472 Msa0531220:CDS 45.0%
! AAAGCCAAAGGTGCATTGGT+GGG - chr4_1:5428454-5428473 Msa0531220:CDS 45.0%
TAAACAAAAGGTCCCCTTCC+AGG + chr4_1:5428505-5428524 None:intergenic 45.0%
!! GGAAGGGGACCTTTTGTTTA+TGG - chr4_1:5428505-5428524 Msa0531220:CDS 45.0%
!! AGGGGACCTTTTGTTTATGG+TGG - chr4_1:5428508-5428527 Msa0531220:CDS 45.0%
!! GGGGACCTTTTGTTTATGGT+GGG - chr4_1:5428509-5428528 Msa0531220:CDS 45.0%
!! GGGACCTTTTGTTTATGGTG+GGG - chr4_1:5428510-5428529 Msa0531220:CDS 45.0%
TGTGCCCCACCATAAACAAA+AGG + chr4_1:5428517-5428536 None:intergenic 45.0%
!! TTTTGTTTATGGTGGGGCAC+AGG - chr4_1:5428516-5428535 Msa0531220:CDS 45.0%
!! AATGGGTGCTGCTGGAAATA+TGG - chr4_1:5428540-5428559 Msa0531220:CDS 45.0%
!! ATGGGTGCTGCTGGAAATAT+GGG - chr4_1:5428541-5428560 Msa0531220:CDS 45.0%
GGAAATATGGGCATCAGTCA+AGG - chr4_1:5428553-5428572 Msa0531220:CDS 45.0%
ACAAACCTGGTAAGAAGGTG+GGG + chr4_1:5428591-5428610 None:intergenic 45.0%
AGAACTTGCACCAAGTAGAC+AGG + chr4_1:5428647-5428666 None:intergenic 45.0%
! GTACAGGAGGTATGTGAGAT+TGG - chr4_1:5429058-5429077 Msa0531220:CDS 45.0%
! TATGTGAGATTGGGTACTGC+AGG - chr4_1:5429068-5429087 Msa0531220:CDS 45.0%
GATGCAGTCATGCAATTTGG+AGG - chr4_1:5429214-5429233 Msa0531220:CDS 45.0%
TGCTAATCCTCAGCTTGGTT+TGG - chr4_1:5429294-5429313 Msa0531220:CDS 45.0%
GCTAATCCTCAGCTTGGTTT+GGG - chr4_1:5429295-5429314 Msa0531220:CDS 45.0%
! GATTTTCCCAAACCAAGCTG+AGG + chr4_1:5429304-5429323 None:intergenic 45.0%
TGGTAGCCTATATACAGACG+AGG + chr4_1:5429428-5429447 None:intergenic 45.0%
!! TCACCATACCTTGCTGTTGA+CGG - chr4_1:5429490-5429509 Msa0531220:intron 45.0%
TTGAAGCCACCGCAAAAAAC+TGG - chr4_1:5429711-5429730 Msa0531220:intron 45.0%
AACGACAGAATAAACCTCGC+AGG - chr4_1:5429841-5429860 Msa0531220:intron 45.0%
AATAAACCTCGCAGGCAAGT+TGG - chr4_1:5429849-5429868 Msa0531220:intron 45.0%
GTTATGCAGGCCTTACTCTT+AGG - chr4_1:5430101-5430120 Msa0531220:intron 45.0%
GAACAAAGGGCCTAAGAGTA+AGG + chr4_1:5430114-5430133 None:intergenic 45.0%
AAGTGCTCCAGATCAAAAGC+TGG + chr4_1:5430138-5430157 None:intergenic 45.0%
!! GCTTTTGATCTGGAGCACTT+TGG - chr4_1:5430138-5430157 Msa0531220:intron 45.0%
TATGGAAGGGAAAGAAAGGG+GGG + chr4_1:5430290-5430309 None:intergenic 45.0%
GCAAGGGCAACATTATGGAA+GGG + chr4_1:5430303-5430322 None:intergenic 45.0%
TGCAAGGGCAACATTATGGA+AGG + chr4_1:5430304-5430323 None:intergenic 45.0%
AGTTATTGCAGTTTGACGGG+TGG - chr4_1:5430362-5430381 Msa0531220:CDS 45.0%
TTTCCAACACACCCTCCTAT+TGG - chr4_1:5430455-5430474 Msa0531220:CDS 45.0%
! GTCAGGCTTTTCGTGAACTA+TGG - chr4_1:5430690-5430709 Msa0531220:five_prime_UTR 45.0%
TGAAGCAGCTGATTGCATCA+TGG - chr4_1:5430742-5430761 Msa0531220:five_prime_UTR 45.0%
TGAAAGGAAGGGATTGAGCG+GGG + chr4_1:5425902-5425921 None:intergenic 50.0%
AGCGATCTTTGCGTCTCTTC+AGG + chr4_1:5426234-5426253 None:intergenic 50.0%
TCTTACAATGCGGAGACGTG+AGG - chr4_1:5426254-5426273 Msa0531220:intron 50.0%
TGAGGAGAAAGGTGAAGGTG+GGG - chr4_1:5426485-5426504 Msa0531220:three_prime_UTR 50.0%
AAAGGTGAAGGTGGGGTTGA+TGG - chr4_1:5426492-5426511 Msa0531220:three_prime_UTR 50.0%
!! CATGTAAAAGGCACCAGCAG+TGG + chr4_1:5426631-5426650 None:intergenic 50.0%
! TTAGATCGAAGGCACGTGCA+TGG - chr4_1:5426828-5426847 Msa0531220:intron 50.0%
TTTCAAAGGCGGATGCATGG+TGG - chr4_1:5427202-5427221 Msa0531220:intron 50.0%
! TGCATGGTGGAAGGAGATTG+TGG - chr4_1:5427215-5427234 Msa0531220:intron 50.0%
! GCATGGTGGAAGGAGATTGT+GGG - chr4_1:5427216-5427235 Msa0531220:intron 50.0%
GCAAGATAGGCGCTATGATG+AGG - chr4_1:5427291-5427310 Msa0531220:intron 50.0%
GAGGACATGTTCGAGGAAAC+AGG - chr4_1:5427469-5427488 Msa0531220:intron 50.0%
GGACCATTCCTTCTGTTGGT+AGG + chr4_1:5427618-5427637 None:intergenic 50.0%
AGCTGGACCATTCCTTCTGT+TGG + chr4_1:5427622-5427641 None:intergenic 50.0%
!! TTATTTTGCACCTGGGGAGC+TGG + chr4_1:5427639-5427658 None:intergenic 50.0%
CACAGGGTCAGATTCTGCAT+TGG + chr4_1:5427822-5427841 None:intergenic 50.0%
! ATCCCCTCCATTTTACCCCT+CGG - chr4_1:5427886-5427905 Msa0531220:intron 50.0%
CTTTGTTAGAAGAGCCCGAG+GGG + chr4_1:5427904-5427923 None:intergenic 50.0%
TAGGCTTTCCAACAGATGGG+CGG + chr4_1:5428093-5428112 None:intergenic 50.0%
AATGTTCATTTGGCACCGCC+TGG - chr4_1:5428118-5428137 Msa0531220:intron 50.0%
ACATGGACACCAGAAGATCC+AGG + chr4_1:5428139-5428158 None:intergenic 50.0%
GAGTATGTGAGGGAACAGGT+TGG + chr4_1:5428231-5428250 None:intergenic 50.0%
ACAGACGTTAAAGTCTGCCC+TGG + chr4_1:5428307-5428326 None:intergenic 50.0%
ACAGATGTGGCCTCAGAATC+AGG - chr4_1:5428430-5428449 Msa0531220:CDS 50.0%
! AAGCCAAAGGTGCATTGGTG+GGG - chr4_1:5428455-5428474 Msa0531220:CDS 50.0%
! AAAGGTGCATTGGTGGGGAA+GGG - chr4_1:5428460-5428479 Msa0531220:CDS 50.0%
! TTATGGTGGGGCACAGGTAA+TGG - chr4_1:5428522-5428541 Msa0531220:CDS 50.0%
! TATGGTGGGGCACAGGTAAT+GGG - chr4_1:5428523-5428542 Msa0531220:CDS 50.0%
GGTAAGAAGGTGGGGAAGTT+TGG + chr4_1:5428583-5428602 None:intergenic 50.0%
AACTTCCCCACCTTCTTACC+AGG - chr4_1:5428583-5428602 Msa0531220:CDS 50.0%
TATAGGCTACCAGTCTTGGC+TGG - chr4_1:5429436-5429455 Msa0531220:intron 50.0%
! TGTAAGCACCGTCAACAGCA+AGG + chr4_1:5429501-5429520 None:intergenic 50.0%
TCAATTGCTGAGGTCTGTCC+CGG + chr4_1:5429532-5429551 None:intergenic 50.0%
GAATGTGGAACAGCATGAGC+AGG + chr4_1:5430338-5430357 None:intergenic 50.0%
! CAACCAATAGGAGGGTGTGT+TGG + chr4_1:5430461-5430480 None:intergenic 50.0%
GAAGGGATTGAGCGGGGATT+GGG + chr4_1:5425896-5425915 None:intergenic 55.0%
GAAGAAGAGGAAAGAGGGGC+AGG - chr4_1:5426291-5426310 Msa0531220:intron 55.0%
! TGGTGGTGTGGTACCCTCTT+TGG - chr4_1:5426542-5426561 Msa0531220:intron 55.0%
GCGTGAGTCAGGGTCATGTA+TGG - chr4_1:5426890-5426909 Msa0531220:CDS 55.0%
! AAAGGCGGATGCATGGTGGA+AGG - chr4_1:5427206-5427225 Msa0531220:intron 55.0%
!! AGGGGTAATTTTCGAGGGCG+TGG - chr4_1:5427423-5427442 Msa0531220:intron 55.0%
CGTGGTAGAATTCGTGGCAC+TGG - chr4_1:5427441-5427460 Msa0531220:intron 55.0%
!! AGAATTCGTGGCACTGGTCG+TGG - chr4_1:5427447-5427466 Msa0531220:intron 55.0%
TGAAAGGAAGAGGGCCTCGA+AGG - chr4_1:5427586-5427605 Msa0531220:CDS 55.0%
! TCCCCTCCATTTTACCCCTC+GGG - chr4_1:5427887-5427906 Msa0531220:intron 55.0%
AGCCCGAGGGGTAAAATGGA+GGG + chr4_1:5427892-5427911 None:intergenic 55.0%
GAAGAGCCCGAGGGGTAAAA+TGG + chr4_1:5427896-5427915 None:intergenic 55.0%
TCCAAATTGGCAGCACCAGC+AGG - chr4_1:5427951-5427970 Msa0531220:intron 55.0%
!! TCCTGCTGGTGCTGCCAATT+TGG + chr4_1:5427955-5427974 None:intergenic 55.0%
TGGACACCAGAAGATCCAGG+CGG + chr4_1:5428136-5428155 None:intergenic 55.0%
CAAGCTACTGCCCCACAGAT+GGG - chr4_1:5428328-5428347 Msa0531220:CDS 55.0%
GAGATCCACTACCAGGTCGA+TGG + chr4_1:5428354-5428373 None:intergenic 55.0%
CTTCCCCACCAATGCACCTT+TGG + chr4_1:5428461-5428480 None:intergenic 55.0%
! CAAAGGTGCATTGGTGGGGA+AGG - chr4_1:5428459-5428478 Msa0531220:CDS 55.0%
! GCATTGGTGGGGAAGGGAAA+TGG - chr4_1:5428466-5428485 Msa0531220:CDS 55.0%
AAGGGAAATGGTGCTCCCCA+GGG - chr4_1:5428478-5428497 Msa0531220:CDS 55.0%
CAATTTGGAGGCCAGCATCC+TGG - chr4_1:5429226-5429245 Msa0531220:CDS 55.0%
!! CTGGTGCTGCAGGAGCTTTA+GGG - chr4_1:5429455-5429474 Msa0531220:intron 55.0%
!! TGGTGCTGCAGGAGCTTTAG+GGG - chr4_1:5429456-5429475 Msa0531220:intron 55.0%
GCACCGTCAACAGCAAGGTA+TGG + chr4_1:5429496-5429515 None:intergenic 55.0%
CGGTGCTTACAGTCGTCAAC+CGG - chr4_1:5429510-5429529 Msa0531220:intron 55.0%
GGTGCTTACAGTCGTCAACC+GGG - chr4_1:5429511-5429530 Msa0531220:intron 55.0%
TGCGACGAACCTTTGCAGCA+AGG - chr4_1:5429662-5429681 Msa0531220:intron 55.0%
GGAAGGGATTGAGCGGGGAT+TGG + chr4_1:5425897-5425916 None:intergenic 60.0%
CCAGCAGTGGGCACAGCAAA+TGG + chr4_1:5426618-5426637 None:intergenic 60.0%
!! CCATTTGCTGTGCCCACTGC+TGG - chr4_1:5426615-5426634 Msa0531220:intron 60.0%
! CGAGGGCGTGGTAGAATTCG+TGG - chr4_1:5427435-5427454 Msa0531220:intron 60.0%
!! ATTCGTGGCACTGGTCGTGG+AGG - chr4_1:5427450-5427469 Msa0531220:intron 60.0%
GGTCGTGGAGGACATGTTCG+AGG - chr4_1:5427462-5427481 Msa0531220:intron 60.0%
AAGGAATGGTCCAGCTCCCC+AGG - chr4_1:5427626-5427645 Msa0531220:intron 60.0%
GCCCGAGGGGTAAAATGGAG+GGG + chr4_1:5427891-5427910 None:intergenic 60.0%
GAGCCCGAGGGGTAAAATGG+AGG + chr4_1:5427893-5427912 None:intergenic 60.0%
CAGTCTGTCCGCCCATCTGT+TGG - chr4_1:5428082-5428101 Msa0531220:intron 60.0%
TTGGCACCGCCTGGATCTTC+TGG - chr4_1:5428127-5428146 Msa0531220:intron 60.0%
! TCTCCTTTTCCCAGGCCTGC+TGG - chr4_1:5428166-5428185 Msa0531220:intron 60.0%
! CTCCTTTTCCCAGGCCTGCT+GGG - chr4_1:5428167-5428186 Msa0531220:intron 60.0%
GCAAGCTACTGCCCCACAGA+TGG - chr4_1:5428327-5428346 Msa0531220:CDS 60.0%
AGGTCGATGGCCCATCTGTG+GGG + chr4_1:5428341-5428360 None:intergenic 60.0%
CAGGTCGATGGCCCATCTGT+GGG + chr4_1:5428342-5428361 None:intergenic 60.0%
ATGGGCCATCGACCTGGTAG+TGG - chr4_1:5428346-5428365 Msa0531220:CDS 60.0%
GAAGGGAAATGGTGCTCCCC+AGG - chr4_1:5428477-5428496 Msa0531220:CDS 60.0%
!! GCACAGGTAATGGGTGCTGC+TGG - chr4_1:5428532-5428551 Msa0531220:CDS 60.0%
TTTGGAGGCCAGCATCCTGG+TGG - chr4_1:5429229-5429248 Msa0531220:CDS 60.0%
AGGCCAGCATCCTGGTGGTA+TGG - chr4_1:5429234-5429253 Msa0531220:CDS 60.0%
GGCCAGCATCCTGGTGGTAT+GGG - chr4_1:5429235-5429254 Msa0531220:CDS 60.0%
CTCCCATACCACCAGGATGC+TGG + chr4_1:5429240-5429259 None:intergenic 60.0%
GCTGTTGGCATGGCATTCCC+TGG - chr4_1:5429265-5429284 Msa0531220:CDS 60.0%
!! GCTGGTGCTGCAGGAGCTTT+AGG - chr4_1:5429454-5429473 Msa0531220:intron 60.0%
TGCAAGCCAACTTGCCTGCG+AGG + chr4_1:5429858-5429877 None:intergenic 60.0%
CCAGGTCGATGGCCCATCTG+TGG + chr4_1:5428343-5428362 None:intergenic 65.0%
CCACAGATGGGCCATCGACC+TGG - chr4_1:5428340-5428359 Msa0531220:CDS 65.0%
AATGGTGCTCCCCAGGGTCC+TGG - chr4_1:5428484-5428503 Msa0531220:CDS 65.0%
TGCTCCCCAGGGTCCTGGAA+GGG - chr4_1:5428489-5428508 Msa0531220:CDS 65.0%
AGGTCCCCTTCCAGGACCCT+GGG + chr4_1:5428497-5428516 None:intergenic 65.0%
AAGGTCCCCTTCCAGGACCC+TGG + chr4_1:5428498-5428517 None:intergenic 65.0%
CCTGCAGCACCAGCCAAGAC+TGG + chr4_1:5429448-5429467 None:intergenic 65.0%
!! CCAGTCTTGGCTGGTGCTGC+AGG - chr4_1:5429445-5429464 Msa0531220:intron 65.0%
GGCCCAGCAGGCCTGGGAAA+AGG + chr4_1:5428172-5428191 None:intergenic 70.0%
TTTCCCAGGCCTGCTGGGCC+TGG - chr4_1:5428172-5428191 Msa0531220:intron 70.0%
TTCCCAGGCCTGCTGGGCCT+GGG - chr4_1:5428173-5428192 Msa0531220:intron 70.0%
GGGATCGGTGCACCTCTCCC+AGG + chr4_1:5428193-5428212 None:intergenic 70.0%
GTGCTCCCCAGGGTCCTGGA+AGG - chr4_1:5428488-5428507 Msa0531220:CDS 70.0%
GCTCCCCAGGGTCCTGGAAG+GGG - chr4_1:5428490-5428509 Msa0531220:CDS 70.0%
GGTCCCCTTCCAGGACCCTG+GGG + chr4_1:5428496-5428515 None:intergenic 70.0%
CTCCCAGGCCCAGCAGGCCT+GGG + chr4_1:5428178-5428197 None:intergenic 75.0%
TCTCCCAGGCCCAGCAGGCC+TGG + chr4_1:5428179-5428198 None:intergenic 75.0%
AGGCCTGCTGGGCCTGGGAG+AGG - chr4_1:5428178-5428197 Msa0531220:intron 75.0%
GCACCTCTCCCAGGCCCAGC+AGG + chr4_1:5428184-5428203 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 5425763 5431090 5425763 ID=Msa0531220;Name=Msa0531220
chr4_1 mRNA 5425763 5431090 5425763 ID=Msa0531220-mRNA-1;Parent=Msa0531220;Name=Msa0531220-mRNA-1;_AED=0.05;_eAED=0.05;_QI=423|0.8|0.81|1|0.8|0.72|11|594|716
chr4_1 exon 5425763 5426209 5425763 ID=Msa0531220-mRNA-1:exon:1725;Parent=Msa0531220-mRNA-1
chr4_1 exon 5426447 5426528 5426447 ID=Msa0531220-mRNA-1:exon:1724;Parent=Msa0531220-mRNA-1
chr4_1 exon 5426666 5426743 5426666 ID=Msa0531220-mRNA-1:exon:1723;Parent=Msa0531220-mRNA-1
chr4_1 exon 5426877 5427036 5426877 ID=Msa0531220-mRNA-1:exon:1722;Parent=Msa0531220-mRNA-1
chr4_1 exon 5427121 5427173 5427121 ID=Msa0531220-mRNA-1:exon:1721;Parent=Msa0531220-mRNA-1
chr4_1 exon 5427293 5427412 5427293 ID=Msa0531220-mRNA-1:exon:1720;Parent=Msa0531220-mRNA-1
chr4_1 exon 5427518 5427632 5427518 ID=Msa0531220-mRNA-1:exon:1719;Parent=Msa0531220-mRNA-1
chr4_1 exon 5428249 5429096 5428249 ID=Msa0531220-mRNA-1:exon:1718;Parent=Msa0531220-mRNA-1
chr4_1 exon 5429192 5429442 5429192 ID=Msa0531220-mRNA-1:exon:1717;Parent=Msa0531220-mRNA-1
chr4_1 exon 5429541 5429625 5429541 ID=Msa0531220-mRNA-1:exon:1716;Parent=Msa0531220-mRNA-1
chr4_1 exon 5430162 5431090 5430162 ID=Msa0531220-mRNA-1:exon:1715;Parent=Msa0531220-mRNA-1
chr4_1 five_prime_UTR 5430668 5431090 5430668 ID=Msa0531220-mRNA-1:five_prime_utr;Parent=Msa0531220-mRNA-1
chr4_1 CDS 5430162 5430667 5430162 ID=Msa0531220-mRNA-1:cds;Parent=Msa0531220-mRNA-1
chr4_1 CDS 5429541 5429625 5429541 ID=Msa0531220-mRNA-1:cds;Parent=Msa0531220-mRNA-1
chr4_1 CDS 5429192 5429442 5429192 ID=Msa0531220-mRNA-1:cds;Parent=Msa0531220-mRNA-1
chr4_1 CDS 5428249 5429096 5428249 ID=Msa0531220-mRNA-1:cds;Parent=Msa0531220-mRNA-1
chr4_1 CDS 5427518 5427632 5427518 ID=Msa0531220-mRNA-1:cds;Parent=Msa0531220-mRNA-1
chr4_1 CDS 5427293 5427412 5427293 ID=Msa0531220-mRNA-1:cds;Parent=Msa0531220-mRNA-1
chr4_1 CDS 5427121 5427173 5427121 ID=Msa0531220-mRNA-1:cds;Parent=Msa0531220-mRNA-1
chr4_1 CDS 5426877 5427036 5426877 ID=Msa0531220-mRNA-1:cds;Parent=Msa0531220-mRNA-1
chr4_1 CDS 5426731 5426743 5426731 ID=Msa0531220-mRNA-1:cds;Parent=Msa0531220-mRNA-1
chr4_1 three_prime_UTR 5426666 5426730 5426666 ID=Msa0531220-mRNA-1:three_prime_utr;Parent=Msa0531220-mRNA-1
chr4_1 three_prime_UTR 5426447 5426528 5426447 ID=Msa0531220-mRNA-1:three_prime_utr;Parent=Msa0531220-mRNA-1
chr4_1 three_prime_UTR 5425763 5426209 5425763 ID=Msa0531220-mRNA-1:three_prime_utr;Parent=Msa0531220-mRNA-1
Gene Sequence

>Msa0531220

ATGGCTAATTCTGTTGCGGAAGAAGATGTTGATTACGAGAGTGATCCTGAAGAGACGCAAAGATCGCTTCTTACAATGCGGAGACGTGAGGCTAGTGATGATGAAGAAGAAGAGGAAAGAGGGGCAGGAGAAAGAGATGATGATTCAGTAAAGAGTGAAGATCTTCGTGTTAGGGTTCGTTCTGATGATTCAGAAGGTGAAGGTGGTGTTGCTGATTATGATGAAGATGATGAGGAAATTGAGGAAGAAGAAGAATATGAGGAAGAAGAGTATGAGGAGGGAGTTGAAGAAGAAGTTTATGAGGAGAAAGGTGAAGGTGGGGTTGATGGTTCTGTGATTGTGGTTAAGGAATCTGATGGTGGTGTGGTACCCTCTTTGGAAGAAGAAGATTCTGGTGAGGTTAATTTGGAGGAGAAAAAGGAGAATGAACCATTTGCTGTGCCCACTGCTGGTGCCTTTTACATGCATGATGACCGCTTTAGGGACAATTCTAATGCCCGCCAAAGGAGATTGTGGGAGTCCAAAGATGACAAGAAATGGGGACATGATAAATTTGAGGAAATTTCAGTGCAAGATAGGCGCTATGATGAGAGGAGACCTTCTAGGGGTAATTTTCGAGGGCGTGGTAGAATTCGTGGCACTGGTCGTGGAGGACATGTTCGAGGAAACAGGAGAGAATACAATGACAGAGAATATAACAACAGAGAATATAATAATAGAGAATATAATGAAGGTAGCAATCAAAATCAGGTGCCTAAGGTTGTTGTGAAAGGAAGAGGGCCTCGAAGGTATGAACCTACCAACAGAAGGAATGGTCCAGCTCCCCAGGTGCAAAATAAACAATCTAGGAAATCTCAGGAGAAAACTTCACGTGCTAGTTCAGAGAGAAACTCCATACCATCATCCAATGCAGAATCTGACCCTGTGCCTGCTAAGAAAACTTCACATGTTTCTTCAAATTTGAACTATGCATCCCCTCCATTTTACCCCTCGGGCTCTTCTAACAAAGAAATTAATCTGCCACAAAAACGGGATGTCCAAATTGGCAGCACCAGCAGGAATATTCACCCAGTTATGGATGAGGGTTTTCCGGTTCAACAAAACAATACAATTCATCGGGGAAAGAATGTTGTTGATTCCATCAGCATGGACAAGCTGTATATTGAGCAGTCTGTCCGCCCATCTGTTGGAAAGCCTATGAACAATGTTCATTTGGCACCGCCTGGATCTTCTGGTGTCCATGTTTCTCAATCTCCTTTTCCCAGGCCTGCTGGGCCTGGGAGAGGTGCACCGATCCCATTACAGATGAATTACCAACCTGTTCCCTCACATACTCAAGTAAATAAAGTTTCTCCAACACAACTGCAGGCTATTCAGAGAAGTTCTGCACCAGGGCAGACTTTAACGTCTGTGCAAGCTACTGCCCCACAGATGGGCCATCGACCTGGTAGTGGATCTCAATCTTCATCTCCACCAAAAAGATCTGCATCAATTAATTCACTTGATTCTGGAGAAACAGATGTGGCCTCAGAATCAGGTAAAGCCAAAGGTGCATTGGTGGGGAAGGGAAATGGTGCTCCCCAGGGTCCTGGAAGGGGACCTTTTGTTTATGGTGGGGCACAGGTAATGGGTGCTGCTGGAAATATGGGCATCAGTCAAGGAGATCCAAACTTCCCCACCTTCTTACCAGTCATGCAATTTGGAGGCCAGCATCCTGGTGGTATGGGAGTTCCTGCTGTTGGCATGGCATTCCCTGGATATGTTGCTAATCCTCAGCTTGGTTTGGGAAAATCAGAAATGACATGGCTACCAGTCTTGGCTGGTGCTGCAGGAGCTTTAGGGGCTCAATACTGTTCACCATACCTTGCTGTTGACGGTGCTTACAGTCGTCAACCGGGACAGACCTCAGCAATTGATAATTCAAGCAAGGAAAATGTGAATAAAGCTAATAATGAATTGAAGCCACCGCAAAAAACTGAGCTGGTAAATGATGAGTATGGACAACGACAGAATAAACCTCGCAGGCAAGTTGGCTTGCAAAATCATCTTTGCTGCTACCGTCATGATTGCATATTTCTCAAATCATTTCAATTAATGTTGGTTATGCTATCTATGCAGATATTCGGAGATGAATTTTGGCCTTACTCTTAG
Protein sequence

>Msa0531220

MANSVAEEDVDYESDPEETQRSLLTMRRREASDDEEEEERGAGERDDDSVKSEDLRVRVRSDDSEGEGGVADYDEDDEEIEEEEEYEEEEYEEGVEEEVYEEKGEGGVDGSVIVVKESDGGVVPSLEEEDSGEVNLEEKKENEPFAVPTAGAFYMHDDRFRDNSNARQRRLWESKDDKKWGHDKFEEISVQDRRYDERRPSRGNFRGRGRIRGTGRGGHVRGNRREYNDREYNNREYNNREYNEGSNQNQVPKVVVKGRGPRRYEPTNRRNGPAPQVQNKQSRKSQEKTSRASSERNSIPSSNAESDPVPAKKTSHVSSNLNYASPPFYPSGSSNKEINLPQKRDVQIGSTSRNIHPVMDEGFPVQQNNTIHRGKNVVDSISMDKLYIEQSVRPSVGKPMNNVHLAPPGSSGVHVSQSPFPRPAGPGRGAPIPLQMNYQPVPSHTQVNKVSPTQLQAIQRSSAPGQTLTSVQATAPQMGHRPGSGSQSSSPPKRSASINSLDSGETDVASESGKAKGALVGKGNGAPQGPGRGPFVYGGAQVMGAAGNMGISQGDPNFPTFLPVMQFGGQHPGGMGVPAVGMAFPGYVANPQLGLGKSEMTWLPVLAGAAGALGAQYCSPYLAVDGAYSRQPGQTSAIDNSSKENVNKANNELKPPQKTELVNDEYGQRQNKPRRQVGLQNHLCCYRHDCIFLKSFQLMLVMLSMQIFGDEFWPYS*